Multiple sequence alignment - TraesCS6B01G434800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434800 chr6B 100.000 5575 0 0 1 5575 703170448 703164874 0.000000e+00 10296.0
1 TraesCS6B01G434800 chr6B 87.429 175 20 2 2682 2854 703167125 703166951 3.410000e-47 200.0
2 TraesCS6B01G434800 chr6B 87.429 175 20 2 3324 3498 703167767 703167595 3.410000e-47 200.0
3 TraesCS6B01G434800 chr6A 90.619 4328 232 77 617 4867 608094481 608090251 0.000000e+00 5583.0
4 TraesCS6B01G434800 chr6A 87.364 736 53 21 4852 5568 608090233 608089519 0.000000e+00 808.0
5 TraesCS6B01G434800 chr6A 78.558 541 37 34 102 610 608095027 608094534 3.290000e-72 283.0
6 TraesCS6B01G434800 chr6A 88.571 175 18 2 2682 2854 608091777 608091603 1.570000e-50 211.0
7 TraesCS6B01G434800 chr6A 83.710 221 29 5 3048 3268 608091328 608091115 9.470000e-48 202.0
8 TraesCS6B01G434800 chr6A 87.429 175 20 2 3324 3498 608092435 608092263 3.410000e-47 200.0
9 TraesCS6B01G434800 chr6D 90.894 3657 215 68 1546 5125 461418523 461414908 0.000000e+00 4800.0
10 TraesCS6B01G434800 chr6D 85.513 780 58 35 675 1433 461419368 461418623 0.000000e+00 763.0
11 TraesCS6B01G434800 chr6D 89.399 283 10 11 5283 5565 461414656 461414394 6.920000e-89 339.0
12 TraesCS6B01G434800 chr6D 85.253 217 23 4 2641 2854 461416742 461416532 1.220000e-51 215.0
13 TraesCS6B01G434800 chr6D 88.636 176 17 3 3324 3498 461417397 461417224 1.570000e-50 211.0
14 TraesCS6B01G434800 chr2A 88.991 218 16 4 1126 1337 745655782 745655997 4.280000e-66 263.0
15 TraesCS6B01G434800 chr2D 88.073 218 18 4 1126 1337 615591745 615591960 9.270000e-63 252.0
16 TraesCS6B01G434800 chr2D 76.522 345 81 0 4057 4401 615592766 615593110 7.370000e-44 189.0
17 TraesCS6B01G434800 chr2B 88.073 218 18 4 1126 1337 750002129 750002344 9.270000e-63 252.0
18 TraesCS6B01G434800 chr5B 100.000 30 0 0 393 422 507376334 507376305 7.800000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434800 chr6B 703164874 703170448 5574 True 3565.333333 10296 91.619333 1 5575 3 chr6B.!!$R1 5574
1 TraesCS6B01G434800 chr6A 608089519 608095027 5508 True 1214.500000 5583 86.041833 102 5568 6 chr6A.!!$R1 5466
2 TraesCS6B01G434800 chr6D 461414394 461419368 4974 True 1265.600000 4800 87.939000 675 5565 5 chr6D.!!$R1 4890
3 TraesCS6B01G434800 chr2D 615591745 615593110 1365 False 220.500000 252 82.297500 1126 4401 2 chr2D.!!$F1 3275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.033991 CTCCTCCTCCTCGTTCCTCA 60.034 60.000 0.0 0.0 0.00 3.86 F
91 92 0.104725 AGGACATCCATCCCTCCCTC 60.105 60.000 0.0 0.0 39.91 4.30 F
927 1056 0.314935 ATGTTCCAAGCAAAGCACCG 59.685 50.000 0.0 0.0 0.00 4.94 F
981 1124 0.460722 CCGCATTCCATTCCATTGCA 59.539 50.000 0.0 0.0 32.94 4.08 F
1650 1843 1.004745 CATTCAGTAGGCCCTGGTTGT 59.995 52.381 0.0 0.0 33.14 3.32 F
3355 3649 0.912486 GGATACCCAGTTGCTCCACT 59.088 55.000 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1031 1174 0.666577 GTCGTCGTCCCTTGACTTGG 60.667 60.000 0.00 0.0 39.47 3.61 R
1650 1843 1.021202 CTATGCCGCATTTCCCGAAA 58.979 50.000 11.97 0.0 34.46 3.46 R
2048 2242 1.143838 CATTCCCCGCTCATCGTCA 59.856 57.895 0.00 0.0 36.19 4.35 R
2186 2383 1.202568 TCATGCAGATACTTGAGCCCG 60.203 52.381 0.00 0.0 0.00 6.13 R
3384 3678 3.574284 TGCACATTTAAGCATCCACAC 57.426 42.857 0.00 0.0 35.51 3.82 R
4999 5352 0.036671 GTACCTGTACCACCCAGCAC 60.037 60.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.697102 CACCTCCTCCTCCTCCTC 57.303 66.667 0.00 0.00 0.00 3.71
18 19 1.454847 CACCTCCTCCTCCTCCTCG 60.455 68.421 0.00 0.00 0.00 4.63
19 20 1.931705 ACCTCCTCCTCCTCCTCGT 60.932 63.158 0.00 0.00 0.00 4.18
20 21 1.308326 CCTCCTCCTCCTCCTCGTT 59.692 63.158 0.00 0.00 0.00 3.85
21 22 0.753848 CCTCCTCCTCCTCCTCGTTC 60.754 65.000 0.00 0.00 0.00 3.95
22 23 0.753848 CTCCTCCTCCTCCTCGTTCC 60.754 65.000 0.00 0.00 0.00 3.62
23 24 1.215679 TCCTCCTCCTCCTCGTTCCT 61.216 60.000 0.00 0.00 0.00 3.36
24 25 0.753848 CCTCCTCCTCCTCGTTCCTC 60.754 65.000 0.00 0.00 0.00 3.71
25 26 0.033991 CTCCTCCTCCTCGTTCCTCA 60.034 60.000 0.00 0.00 0.00 3.86
26 27 0.323542 TCCTCCTCCTCGTTCCTCAC 60.324 60.000 0.00 0.00 0.00 3.51
27 28 1.324005 CCTCCTCCTCGTTCCTCACC 61.324 65.000 0.00 0.00 0.00 4.02
28 29 0.323908 CTCCTCCTCGTTCCTCACCT 60.324 60.000 0.00 0.00 0.00 4.00
29 30 0.323542 TCCTCCTCGTTCCTCACCTC 60.324 60.000 0.00 0.00 0.00 3.85
30 31 0.612174 CCTCCTCGTTCCTCACCTCA 60.612 60.000 0.00 0.00 0.00 3.86
31 32 0.528470 CTCCTCGTTCCTCACCTCAC 59.472 60.000 0.00 0.00 0.00 3.51
32 33 0.112606 TCCTCGTTCCTCACCTCACT 59.887 55.000 0.00 0.00 0.00 3.41
33 34 1.353358 TCCTCGTTCCTCACCTCACTA 59.647 52.381 0.00 0.00 0.00 2.74
34 35 1.746220 CCTCGTTCCTCACCTCACTAG 59.254 57.143 0.00 0.00 0.00 2.57
47 48 2.971901 TCACTAGGTGGTGAGAGTGA 57.028 50.000 0.00 0.00 44.55 3.41
48 49 2.796557 TCACTAGGTGGTGAGAGTGAG 58.203 52.381 0.00 0.00 42.51 3.51
49 50 2.375509 TCACTAGGTGGTGAGAGTGAGA 59.624 50.000 0.00 0.00 42.51 3.27
50 51 2.752354 CACTAGGTGGTGAGAGTGAGAG 59.248 54.545 0.00 0.00 41.51 3.20
51 52 2.645297 ACTAGGTGGTGAGAGTGAGAGA 59.355 50.000 0.00 0.00 0.00 3.10
52 53 1.917872 AGGTGGTGAGAGTGAGAGAC 58.082 55.000 0.00 0.00 0.00 3.36
53 54 0.523966 GGTGGTGAGAGTGAGAGACG 59.476 60.000 0.00 0.00 0.00 4.18
54 55 1.524848 GTGGTGAGAGTGAGAGACGA 58.475 55.000 0.00 0.00 0.00 4.20
55 56 1.198178 GTGGTGAGAGTGAGAGACGAC 59.802 57.143 0.00 0.00 0.00 4.34
56 57 1.202770 TGGTGAGAGTGAGAGACGACA 60.203 52.381 0.00 0.00 0.00 4.35
57 58 1.198178 GGTGAGAGTGAGAGACGACAC 59.802 57.143 0.00 0.00 37.30 3.67
58 59 1.198178 GTGAGAGTGAGAGACGACACC 59.802 57.143 0.00 0.00 37.69 4.16
59 60 1.202770 TGAGAGTGAGAGACGACACCA 60.203 52.381 0.00 0.00 37.69 4.17
60 61 1.466950 GAGAGTGAGAGACGACACCAG 59.533 57.143 0.00 0.00 37.69 4.00
61 62 0.109504 GAGTGAGAGACGACACCAGC 60.110 60.000 0.00 0.00 37.69 4.85
62 63 1.080434 GTGAGAGACGACACCAGCC 60.080 63.158 0.00 0.00 0.00 4.85
63 64 2.179517 GAGAGACGACACCAGCCG 59.820 66.667 0.00 0.00 0.00 5.52
64 65 2.597805 AGAGACGACACCAGCCGT 60.598 61.111 0.00 0.00 42.17 5.68
67 68 4.736896 GACGACACCAGCCGTCCC 62.737 72.222 0.00 0.00 46.54 4.46
70 71 4.736896 GACACCAGCCGTCCCGTC 62.737 72.222 0.00 0.00 0.00 4.79
81 82 2.447920 TCCCGTCCAGGACATCCA 59.552 61.111 20.13 0.00 45.00 3.41
82 83 1.002921 TCCCGTCCAGGACATCCAT 59.997 57.895 20.13 0.00 45.00 3.41
83 84 1.048724 TCCCGTCCAGGACATCCATC 61.049 60.000 20.13 0.00 45.00 3.51
84 85 1.447643 CCGTCCAGGACATCCATCC 59.552 63.158 20.13 0.00 45.00 3.51
85 86 1.447643 CGTCCAGGACATCCATCCC 59.552 63.158 20.13 0.00 39.91 3.85
86 87 1.050988 CGTCCAGGACATCCATCCCT 61.051 60.000 20.13 0.00 39.91 4.20
87 88 0.761802 GTCCAGGACATCCATCCCTC 59.238 60.000 15.43 0.00 39.91 4.30
88 89 0.400525 TCCAGGACATCCATCCCTCC 60.401 60.000 0.00 0.00 39.91 4.30
89 90 1.422161 CCAGGACATCCATCCCTCCC 61.422 65.000 0.00 0.00 39.91 4.30
90 91 0.401105 CAGGACATCCATCCCTCCCT 60.401 60.000 0.00 0.00 39.91 4.20
91 92 0.104725 AGGACATCCATCCCTCCCTC 60.105 60.000 0.00 0.00 39.91 4.30
92 93 1.130678 GGACATCCATCCCTCCCTCC 61.131 65.000 0.00 0.00 35.64 4.30
93 94 1.073397 ACATCCATCCCTCCCTCCC 60.073 63.158 0.00 0.00 0.00 4.30
94 95 1.241327 CATCCATCCCTCCCTCCCT 59.759 63.158 0.00 0.00 0.00 4.20
95 96 0.839853 CATCCATCCCTCCCTCCCTC 60.840 65.000 0.00 0.00 0.00 4.30
96 97 2.054834 ATCCATCCCTCCCTCCCTCC 62.055 65.000 0.00 0.00 0.00 4.30
97 98 2.122189 CATCCCTCCCTCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
98 99 2.628465 ATCCCTCCCTCCCTCCCA 60.628 66.667 0.00 0.00 0.00 4.37
99 100 2.731461 ATCCCTCCCTCCCTCCCAG 61.731 68.421 0.00 0.00 0.00 4.45
100 101 4.505970 CCCTCCCTCCCTCCCAGG 62.506 77.778 0.00 0.00 34.30 4.45
130 131 3.551496 CTTTGACCGGGCTGCTCCA 62.551 63.158 9.82 0.00 36.21 3.86
143 154 1.006400 CTGCTCCATTCCCTTTCCCTT 59.994 52.381 0.00 0.00 0.00 3.95
156 167 3.691342 CCCTTCGCCGTCAGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
157 168 2.432628 CCTTCGCCGTCAGTCCAC 60.433 66.667 0.00 0.00 0.00 4.02
160 171 2.142357 CTTCGCCGTCAGTCCACTCA 62.142 60.000 0.00 0.00 0.00 3.41
161 172 2.126307 CGCCGTCAGTCCACTCAG 60.126 66.667 0.00 0.00 0.00 3.35
164 175 2.574018 CCGTCAGTCCACTCAGCCA 61.574 63.158 0.00 0.00 0.00 4.75
173 185 1.692042 CACTCAGCCATCCCCTCCT 60.692 63.158 0.00 0.00 0.00 3.69
176 188 3.554342 CAGCCATCCCCTCCTCGG 61.554 72.222 0.00 0.00 0.00 4.63
230 250 4.029809 CCCCTTTCCCCGTCGCTT 62.030 66.667 0.00 0.00 0.00 4.68
231 251 2.436115 CCCTTTCCCCGTCGCTTC 60.436 66.667 0.00 0.00 0.00 3.86
237 257 3.391382 CCCCGTCGCTTCCTTCCT 61.391 66.667 0.00 0.00 0.00 3.36
248 268 2.751837 CCTTCCTTTCCTGCCCGC 60.752 66.667 0.00 0.00 0.00 6.13
310 330 4.060038 GGTTTCCCCTCGTCGCGA 62.060 66.667 3.71 3.71 0.00 5.87
311 331 2.808321 GTTTCCCCTCGTCGCGAC 60.808 66.667 28.96 28.96 0.00 5.19
312 332 2.987547 TTTCCCCTCGTCGCGACT 60.988 61.111 33.94 0.00 0.00 4.18
313 333 3.277211 TTTCCCCTCGTCGCGACTG 62.277 63.158 33.94 26.43 0.00 3.51
342 362 3.443045 CCAGCAACCGCACCCATC 61.443 66.667 0.00 0.00 42.27 3.51
343 363 3.803082 CAGCAACCGCACCCATCG 61.803 66.667 0.00 0.00 42.27 3.84
378 398 1.035385 TCGCCGCAACTCATCCTCTA 61.035 55.000 0.00 0.00 0.00 2.43
486 506 2.485657 GGGGGTGATTAACTAGCAGAGC 60.486 54.545 0.00 0.00 0.00 4.09
487 507 2.170607 GGGGTGATTAACTAGCAGAGCA 59.829 50.000 0.00 0.00 0.00 4.26
488 508 3.462021 GGGTGATTAACTAGCAGAGCAG 58.538 50.000 0.00 0.00 0.00 4.24
492 512 4.026744 TGATTAACTAGCAGAGCAGAGGT 58.973 43.478 0.00 0.00 0.00 3.85
516 536 2.254546 TCAATTGGATTATCGCGCCT 57.745 45.000 0.00 0.00 0.00 5.52
551 584 3.177920 CTCTGCTCTCACGCGTGC 61.178 66.667 33.63 22.51 0.00 5.34
589 622 4.401202 AGTTCGGTGTGAAATCAAGGTTTT 59.599 37.500 0.00 0.00 38.60 2.43
607 640 4.870991 GGTTTTACCTTCTAGTAGCAGCAG 59.129 45.833 0.00 0.00 34.73 4.24
610 643 6.845758 TTTACCTTCTAGTAGCAGCAGTAA 57.154 37.500 0.00 0.00 0.00 2.24
611 644 4.993029 ACCTTCTAGTAGCAGCAGTAAG 57.007 45.455 0.00 0.00 0.00 2.34
613 646 4.399934 ACCTTCTAGTAGCAGCAGTAAGAC 59.600 45.833 0.00 0.00 0.00 3.01
615 648 2.943690 TCTAGTAGCAGCAGTAAGACGG 59.056 50.000 0.00 0.00 0.00 4.79
635 714 4.520492 ACGGCAAGAATTCAGATTTGTTCT 59.480 37.500 8.44 0.00 33.90 3.01
641 720 8.940952 GCAAGAATTCAGATTTGTTCTACTACT 58.059 33.333 8.44 0.00 31.77 2.57
666 745 2.816087 AGTTGTCATTCATCTGTGCCAC 59.184 45.455 0.00 0.00 0.00 5.01
694 787 3.920412 GGATGGTTTCGTTTGCTGAATTC 59.080 43.478 0.00 0.00 0.00 2.17
709 806 0.593128 AATTCACACAAGCCACGCTC 59.407 50.000 0.00 0.00 38.25 5.03
711 808 0.534877 TTCACACAAGCCACGCTCAT 60.535 50.000 0.00 0.00 38.25 2.90
717 814 2.017049 ACAAGCCACGCTCATAATTCC 58.983 47.619 0.00 0.00 38.25 3.01
761 858 4.036498 CGTCCGTGTATCCTTACTGAATCT 59.964 45.833 0.00 0.00 0.00 2.40
767 873 7.040340 CCGTGTATCCTTACTGAATCTATCTGT 60.040 40.741 0.00 0.00 42.24 3.41
790 896 4.907879 AGAAACACTGCCTGAAGAAAAG 57.092 40.909 0.00 0.00 0.00 2.27
791 897 4.526970 AGAAACACTGCCTGAAGAAAAGA 58.473 39.130 0.00 0.00 0.00 2.52
792 898 4.949856 AGAAACACTGCCTGAAGAAAAGAA 59.050 37.500 0.00 0.00 0.00 2.52
793 899 5.418840 AGAAACACTGCCTGAAGAAAAGAAA 59.581 36.000 0.00 0.00 0.00 2.52
794 900 5.659440 AACACTGCCTGAAGAAAAGAAAA 57.341 34.783 0.00 0.00 0.00 2.29
799 905 5.595952 ACTGCCTGAAGAAAAGAAAACAGAT 59.404 36.000 0.00 0.00 0.00 2.90
802 908 6.096705 TGCCTGAAGAAAAGAAAACAGATCAA 59.903 34.615 0.00 0.00 0.00 2.57
817 923 8.862550 AAACAGATCAATTTTCAGTTCAGAAC 57.137 30.769 5.00 5.00 0.00 3.01
834 940 4.904241 CAGAACTCTGAATCCCTTCTTGT 58.096 43.478 0.03 0.00 46.59 3.16
841 951 4.347876 TCTGAATCCCTTCTTGTCTGACAA 59.652 41.667 20.95 20.95 36.54 3.18
848 958 3.065371 CCTTCTTGTCTGACAACACAACC 59.935 47.826 18.69 0.00 33.96 3.77
854 964 2.016318 TCTGACAACACAACCTGCTTG 58.984 47.619 0.00 0.00 35.77 4.01
857 967 0.969917 ACAACACAACCTGCTTGCCA 60.970 50.000 0.00 0.00 32.41 4.92
862 972 1.868498 CACAACCTGCTTGCCAAAATG 59.132 47.619 0.00 0.00 32.41 2.32
863 973 0.869730 CAACCTGCTTGCCAAAATGC 59.130 50.000 0.00 0.00 0.00 3.56
867 977 1.404583 CCTGCTTGCCAAAATGCTACC 60.405 52.381 0.00 0.00 0.00 3.18
875 988 2.101415 GCCAAAATGCTACCCATCCTTC 59.899 50.000 0.00 0.00 31.43 3.46
913 1042 5.342806 TCAGATTTGTGTTCGTGATGTTC 57.657 39.130 0.00 0.00 0.00 3.18
925 1054 2.397549 GTGATGTTCCAAGCAAAGCAC 58.602 47.619 0.00 0.00 0.00 4.40
927 1056 0.314935 ATGTTCCAAGCAAAGCACCG 59.685 50.000 0.00 0.00 0.00 4.94
930 1059 1.452145 TTCCAAGCAAAGCACCGACC 61.452 55.000 0.00 0.00 0.00 4.79
974 1117 0.468029 ATCCCCACCGCATTCCATTC 60.468 55.000 0.00 0.00 0.00 2.67
975 1118 2.127232 CCCCACCGCATTCCATTCC 61.127 63.158 0.00 0.00 0.00 3.01
976 1119 1.379710 CCCACCGCATTCCATTCCA 60.380 57.895 0.00 0.00 0.00 3.53
977 1120 0.756442 CCCACCGCATTCCATTCCAT 60.756 55.000 0.00 0.00 0.00 3.41
978 1121 1.113788 CCACCGCATTCCATTCCATT 58.886 50.000 0.00 0.00 0.00 3.16
979 1122 1.202440 CCACCGCATTCCATTCCATTG 60.202 52.381 0.00 0.00 0.00 2.82
980 1123 0.461135 ACCGCATTCCATTCCATTGC 59.539 50.000 0.00 0.00 0.00 3.56
981 1124 0.460722 CCGCATTCCATTCCATTGCA 59.539 50.000 0.00 0.00 32.94 4.08
1349 1504 3.744719 CAAGGGCTCCGACGACGA 61.745 66.667 9.28 0.00 42.66 4.20
1389 1553 2.393768 CGCCGTCAAGCAGCTGAAT 61.394 57.895 20.43 1.05 0.00 2.57
1433 1597 2.520069 CCTCTCACTGTCCTGTACTGT 58.480 52.381 0.00 0.00 40.57 3.55
1434 1598 3.561528 CCCTCTCACTGTCCTGTACTGTA 60.562 52.174 0.00 0.00 38.11 2.74
1451 1642 9.920133 CTGTACTGTATTATTGTCAGATAGCAT 57.080 33.333 0.00 0.00 33.93 3.79
1508 1699 6.210385 ACAGTCCAATTGTATGCATTACCAAA 59.790 34.615 3.54 0.00 0.00 3.28
1516 1707 6.909550 TGTATGCATTACCAAAAGGAGTTT 57.090 33.333 3.54 0.00 0.00 2.66
1517 1708 8.410673 TTGTATGCATTACCAAAAGGAGTTTA 57.589 30.769 3.54 0.00 0.00 2.01
1518 1709 8.588290 TGTATGCATTACCAAAAGGAGTTTAT 57.412 30.769 3.54 0.00 0.00 1.40
1544 1735 8.948853 ATTACTCATTCGTAACAACAAATGTG 57.051 30.769 0.00 0.00 42.99 3.21
1567 1760 2.479566 TGGTCTGGTTCTGCATCTTC 57.520 50.000 0.00 0.00 0.00 2.87
1573 1766 4.067896 TCTGGTTCTGCATCTTCAAACTC 58.932 43.478 0.00 0.00 0.00 3.01
1574 1767 4.070716 CTGGTTCTGCATCTTCAAACTCT 58.929 43.478 0.00 0.00 0.00 3.24
1575 1768 3.817084 TGGTTCTGCATCTTCAAACTCTG 59.183 43.478 0.00 0.00 0.00 3.35
1576 1769 3.365767 GGTTCTGCATCTTCAAACTCTGC 60.366 47.826 0.00 0.00 0.00 4.26
1587 1780 4.836125 TCAAACTCTGCATCTTGAAACC 57.164 40.909 0.00 0.00 0.00 3.27
1599 1792 5.337813 GCATCTTGAAACCAATCCAGGATTT 60.338 40.000 12.49 0.00 28.87 2.17
1602 1795 6.789268 TCTTGAAACCAATCCAGGATTTCTA 58.211 36.000 12.49 4.82 28.87 2.10
1650 1843 1.004745 CATTCAGTAGGCCCTGGTTGT 59.995 52.381 0.00 0.00 33.14 3.32
1738 1932 5.765182 ACTTGCATGTTGTTCTAGTTTAGCT 59.235 36.000 0.00 0.00 0.00 3.32
1782 1976 1.885887 GCCAGCATACAGGAACAACAA 59.114 47.619 0.00 0.00 0.00 2.83
1784 1978 2.884012 CCAGCATACAGGAACAACAACA 59.116 45.455 0.00 0.00 0.00 3.33
1786 1980 4.290155 CAGCATACAGGAACAACAACAAC 58.710 43.478 0.00 0.00 0.00 3.32
1787 1981 3.951037 AGCATACAGGAACAACAACAACA 59.049 39.130 0.00 0.00 0.00 3.33
1788 1982 4.036734 AGCATACAGGAACAACAACAACAG 59.963 41.667 0.00 0.00 0.00 3.16
1789 1983 2.939460 ACAGGAACAACAACAACAGC 57.061 45.000 0.00 0.00 0.00 4.40
1790 1984 2.446435 ACAGGAACAACAACAACAGCT 58.554 42.857 0.00 0.00 0.00 4.24
1791 1985 3.616219 ACAGGAACAACAACAACAGCTA 58.384 40.909 0.00 0.00 0.00 3.32
1792 1986 4.013728 ACAGGAACAACAACAACAGCTAA 58.986 39.130 0.00 0.00 0.00 3.09
1793 1987 4.644685 ACAGGAACAACAACAACAGCTAAT 59.355 37.500 0.00 0.00 0.00 1.73
1794 1988 5.215160 CAGGAACAACAACAACAGCTAATC 58.785 41.667 0.00 0.00 0.00 1.75
1795 1989 5.009010 CAGGAACAACAACAACAGCTAATCT 59.991 40.000 0.00 0.00 0.00 2.40
1796 1990 6.204688 CAGGAACAACAACAACAGCTAATCTA 59.795 38.462 0.00 0.00 0.00 1.98
1832 2026 2.159558 TCGTAGCAGTACTCGAGCAAAG 60.160 50.000 13.61 1.49 0.00 2.77
1836 2030 1.071605 CAGTACTCGAGCAAAGCACC 58.928 55.000 13.61 0.00 0.00 5.01
1864 2058 7.286087 AGCATATTATTCCAGCATTTCAGTTCA 59.714 33.333 0.00 0.00 0.00 3.18
1886 2080 2.027377 ACTTGCTTGATGAGTCCCTCTG 60.027 50.000 0.00 0.00 0.00 3.35
1927 2121 2.191128 AGCTTGAGCCACTAGTTTGG 57.809 50.000 0.00 0.00 43.38 3.28
1942 2136 8.101419 CCACTAGTTTGGGGTTCCTAATATATC 58.899 40.741 0.00 0.00 32.35 1.63
2006 2200 2.552599 TGAACGTGCTTGGGATTGTA 57.447 45.000 0.00 0.00 0.00 2.41
2048 2242 2.626743 ACTAATAGGTTACTGCGCGGAT 59.373 45.455 25.98 9.97 0.00 4.18
2138 2335 3.136626 ACTTGGCAAGTAGGTCAACTTCT 59.863 43.478 30.31 1.55 40.69 2.85
2144 2341 5.418209 GGCAAGTAGGTCAACTTCTACTCTA 59.582 44.000 0.00 0.00 43.59 2.43
2153 2350 4.038042 TCAACTTCTACTCTATCATGGCCG 59.962 45.833 0.00 0.00 0.00 6.13
2186 2383 2.930385 TAGCTCTTGATGCTGCCCGC 62.930 60.000 0.00 0.00 41.32 6.13
2309 2549 5.611796 TCAACATCACTGCTTGATTACAC 57.388 39.130 0.00 0.00 42.87 2.90
2521 2761 2.056094 GTACGCACATATACGGACCC 57.944 55.000 0.00 0.00 37.14 4.46
2566 2806 2.086869 CTGACAGCATTCCGTTCCATT 58.913 47.619 0.00 0.00 0.00 3.16
2745 2985 8.440833 GGTATAATTGTTTCGGTGTATGCTATC 58.559 37.037 0.00 0.00 0.00 2.08
2906 3176 5.059833 ACAAAGCCAGCTATATCTACAAGC 58.940 41.667 0.00 0.00 36.48 4.01
3034 3319 2.299297 AGAGTACAGAACCCTGGTTTCG 59.701 50.000 2.55 0.46 44.60 3.46
3172 3458 3.122937 CTAAAGTGCTTGCTTTAGCCG 57.877 47.619 16.75 0.00 45.87 5.52
3189 3475 2.007608 GCCGCCTTTAGAAGTTGTAGG 58.992 52.381 0.00 0.00 0.00 3.18
3355 3649 0.912486 GGATACCCAGTTGCTCCACT 59.088 55.000 0.00 0.00 0.00 4.00
3384 3678 6.928979 TGGTATAATTGTTTCGGTGTATGG 57.071 37.500 0.00 0.00 0.00 2.74
3386 3680 6.316640 TGGTATAATTGTTTCGGTGTATGGTG 59.683 38.462 0.00 0.00 0.00 4.17
3388 3682 4.497473 AATTGTTTCGGTGTATGGTGTG 57.503 40.909 0.00 0.00 0.00 3.82
3518 3812 7.506328 TGAAGCGTTAGTCAGAGCTATATAA 57.494 36.000 0.00 0.00 39.25 0.98
3668 3962 7.120923 TCCATCCTAACTACCATAACAACTC 57.879 40.000 0.00 0.00 0.00 3.01
3854 4162 4.408921 AGGCTAAGCAATAGTCACATGGTA 59.591 41.667 0.00 0.00 38.78 3.25
3969 4277 9.322773 AGTTTGTTTAGTTCCTAGTACAACTTC 57.677 33.333 2.07 0.00 34.60 3.01
3980 4288 8.418597 TCCTAGTACAACTTCAACTTGATACT 57.581 34.615 0.00 7.04 0.00 2.12
3983 4291 7.964604 AGTACAACTTCAACTTGATACTTCC 57.035 36.000 0.00 0.00 0.00 3.46
3990 4298 7.453393 ACTTCAACTTGATACTTCCTTGATCA 58.547 34.615 0.00 0.00 0.00 2.92
3998 4306 7.384524 TGATACTTCCTTGATCATCCATCTT 57.615 36.000 0.00 0.00 31.92 2.40
3999 4307 8.496534 TGATACTTCCTTGATCATCCATCTTA 57.503 34.615 0.00 0.00 31.92 2.10
4000 4308 8.937835 TGATACTTCCTTGATCATCCATCTTAA 58.062 33.333 0.00 0.00 31.92 1.85
4001 4309 9.213799 GATACTTCCTTGATCATCCATCTTAAC 57.786 37.037 0.00 0.00 31.92 2.01
4002 4310 7.205515 ACTTCCTTGATCATCCATCTTAACT 57.794 36.000 0.00 0.00 31.92 2.24
4003 4311 8.324191 ACTTCCTTGATCATCCATCTTAACTA 57.676 34.615 0.00 0.00 31.92 2.24
4004 4312 8.772250 ACTTCCTTGATCATCCATCTTAACTAA 58.228 33.333 0.00 0.00 31.92 2.24
4005 4313 8.964476 TTCCTTGATCATCCATCTTAACTAAC 57.036 34.615 0.00 0.00 31.92 2.34
4006 4314 8.324191 TCCTTGATCATCCATCTTAACTAACT 57.676 34.615 0.00 0.00 31.92 2.24
4007 4315 8.772250 TCCTTGATCATCCATCTTAACTAACTT 58.228 33.333 0.00 0.00 31.92 2.66
4008 4316 9.050601 CCTTGATCATCCATCTTAACTAACTTC 57.949 37.037 0.00 0.00 31.92 3.01
4009 4317 9.829507 CTTGATCATCCATCTTAACTAACTTCT 57.170 33.333 0.00 0.00 31.92 2.85
4082 4390 4.719369 CTAGGATACGCCGCGCCC 62.719 72.222 13.88 11.80 43.43 6.13
4271 4579 3.515286 ATCATCGTCGACCCGCGT 61.515 61.111 10.58 0.00 41.80 6.01
4274 4582 3.437795 ATCGTCGACCCGCGTCTT 61.438 61.111 10.58 0.00 41.80 3.01
4287 4595 1.153823 CGTCTTGAGGGCCACTACG 60.154 63.158 6.18 7.95 0.00 3.51
4304 4612 1.338107 ACGACCTCAAGTCCATGACA 58.662 50.000 0.00 0.00 43.08 3.58
4560 4868 0.462759 GGGCTGGAAACCTGAGATCG 60.463 60.000 0.00 0.00 0.00 3.69
4589 4899 0.685458 GCTGAAATGGATGCCACCCT 60.685 55.000 0.00 0.00 35.80 4.34
4590 4900 1.396653 CTGAAATGGATGCCACCCTC 58.603 55.000 0.00 0.00 35.80 4.30
4718 5030 1.400142 TGAGCCGTCTTGTTTTGTGTG 59.600 47.619 0.00 0.00 0.00 3.82
4751 5064 2.417586 TGAGCTGCAAGATTGTGAATCG 59.582 45.455 1.02 0.00 42.75 3.34
4764 5077 1.392510 GTGAATCGGTAGGTCGTTTGC 59.607 52.381 0.00 0.00 0.00 3.68
4806 5119 5.247110 AGCTCTTCCATCTTGTGAACTCTTA 59.753 40.000 0.00 0.00 0.00 2.10
4809 5122 7.413877 GCTCTTCCATCTTGTGAACTCTTATTG 60.414 40.741 0.00 0.00 0.00 1.90
4818 5131 5.793817 TGTGAACTCTTATTGCTAGCAGAA 58.206 37.500 18.45 14.74 0.00 3.02
4819 5132 6.409704 TGTGAACTCTTATTGCTAGCAGAAT 58.590 36.000 18.45 12.21 0.00 2.40
4820 5133 7.555965 TGTGAACTCTTATTGCTAGCAGAATA 58.444 34.615 18.45 11.13 0.00 1.75
4821 5134 7.708322 TGTGAACTCTTATTGCTAGCAGAATAG 59.292 37.037 18.45 18.10 0.00 1.73
4822 5135 7.923344 GTGAACTCTTATTGCTAGCAGAATAGA 59.077 37.037 22.75 19.26 0.00 1.98
4823 5136 8.140628 TGAACTCTTATTGCTAGCAGAATAGAG 58.859 37.037 28.17 28.17 0.00 2.43
4824 5137 7.831691 ACTCTTATTGCTAGCAGAATAGAGA 57.168 36.000 32.31 23.14 0.00 3.10
4833 5146 9.794719 TTGCTAGCAGAATAGAGAGTACTAATA 57.205 33.333 18.45 0.00 0.00 0.98
4849 5162 9.124807 GAGTACTAATATTGTTTGTGCAAAACC 57.875 33.333 16.58 0.24 31.33 3.27
4929 5281 3.055530 AGCAAGATGTGACCTGAACCTAG 60.056 47.826 0.00 0.00 0.00 3.02
4989 5342 2.157421 GCTCGATGCGGAATGATCC 58.843 57.895 0.00 0.00 42.80 3.36
5062 5415 1.683917 CTCAGATAAGACCCAGACCCG 59.316 57.143 0.00 0.00 0.00 5.28
5088 5441 1.909302 TCACATCAGAAAGAGACCCCC 59.091 52.381 0.00 0.00 0.00 5.40
5093 5446 1.699634 TCAGAAAGAGACCCCCTTGTG 59.300 52.381 0.00 0.00 0.00 3.33
5154 5617 2.682893 GCTACAAGTCAGCCCGATG 58.317 57.895 0.00 0.00 32.68 3.84
5171 5634 2.194271 GATGTTTCGATCGGACTGTCC 58.806 52.381 16.99 16.99 0.00 4.02
5177 5640 0.528466 CGATCGGACTGTCCACATGG 60.528 60.000 25.42 13.91 35.91 3.66
5193 5656 5.772169 TCCACATGGTTGATCATTTGTTACA 59.228 36.000 0.00 0.00 36.34 2.41
5200 5663 8.408043 TGGTTGATCATTTGTTACAAGAGAAT 57.592 30.769 0.00 0.00 0.00 2.40
5226 5689 0.400213 TGACCAAAATCTCCACCGCT 59.600 50.000 0.00 0.00 0.00 5.52
5235 5698 3.594603 ATCTCCACCGCTAATAATCCG 57.405 47.619 0.00 0.00 0.00 4.18
5242 5705 1.535462 CCGCTAATAATCCGGCAAAGG 59.465 52.381 0.00 0.00 35.14 3.11
5253 5716 2.568090 GCAAAGGTCATGCCGGTG 59.432 61.111 1.90 0.00 43.70 4.94
5299 5779 2.038557 GAGTTTCTGCTGTTCCCCTGTA 59.961 50.000 0.00 0.00 0.00 2.74
5302 5782 1.078143 CTGCTGTTCCCCTGTAGCC 60.078 63.158 0.00 0.00 35.36 3.93
5381 5861 4.895297 ACAGTGAACACTTTCCATTCCATT 59.105 37.500 4.63 0.00 40.20 3.16
5382 5862 5.010012 ACAGTGAACACTTTCCATTCCATTC 59.990 40.000 4.63 0.00 40.20 2.67
5383 5863 5.242393 CAGTGAACACTTTCCATTCCATTCT 59.758 40.000 4.63 0.00 40.20 2.40
5384 5864 6.430925 CAGTGAACACTTTCCATTCCATTCTA 59.569 38.462 4.63 0.00 40.20 2.10
5385 5865 7.121759 CAGTGAACACTTTCCATTCCATTCTAT 59.878 37.037 4.63 0.00 40.20 1.98
5386 5866 7.671398 AGTGAACACTTTCCATTCCATTCTATT 59.329 33.333 1.32 0.00 38.83 1.73
5387 5867 7.970614 GTGAACACTTTCCATTCCATTCTATTC 59.029 37.037 0.00 0.00 0.00 1.75
5388 5868 7.122650 TGAACACTTTCCATTCCATTCTATTCC 59.877 37.037 0.00 0.00 0.00 3.01
5389 5869 6.493166 ACACTTTCCATTCCATTCTATTCCA 58.507 36.000 0.00 0.00 0.00 3.53
5390 5870 7.128077 ACACTTTCCATTCCATTCTATTCCAT 58.872 34.615 0.00 0.00 0.00 3.41
5394 5874 7.770366 TTCCATTCCATTCTATTCCATCATG 57.230 36.000 0.00 0.00 0.00 3.07
5396 5876 6.944290 TCCATTCCATTCTATTCCATCATGAC 59.056 38.462 0.00 0.00 0.00 3.06
5421 5901 3.285290 TCTCCTTCCTCCCCAACTTAA 57.715 47.619 0.00 0.00 0.00 1.85
5422 5902 2.910977 TCTCCTTCCTCCCCAACTTAAC 59.089 50.000 0.00 0.00 0.00 2.01
5423 5903 2.913617 CTCCTTCCTCCCCAACTTAACT 59.086 50.000 0.00 0.00 0.00 2.24
5465 5945 0.032813 ATGGGTGGAGCAGAATTGGG 60.033 55.000 0.00 0.00 0.00 4.12
5475 5955 1.978454 CAGAATTGGGGGCAGATCTC 58.022 55.000 0.00 0.00 0.00 2.75
5516 5996 2.820037 GGCTCCTTTCGGCTTCGG 60.820 66.667 0.00 0.00 34.13 4.30
5531 6011 4.807039 CGGCGAATCGGACCGGTT 62.807 66.667 13.38 13.38 43.23 4.44
5532 6012 3.192922 GGCGAATCGGACCGGTTG 61.193 66.667 19.11 10.79 27.16 3.77
5533 6013 2.125832 GCGAATCGGACCGGTTGA 60.126 61.111 19.11 11.17 27.16 3.18
5534 6014 2.450345 GCGAATCGGACCGGTTGAC 61.450 63.158 19.11 4.95 27.16 3.18
5565 6045 1.081641 TCGCCTGTCGACGAAGAAC 60.082 57.895 11.62 0.00 43.16 3.01
5568 6048 1.443872 CCTGTCGACGAAGAACCGG 60.444 63.158 11.62 0.00 0.00 5.28
5569 6049 2.049802 TGTCGACGAAGAACCGGC 60.050 61.111 11.62 0.00 0.00 6.13
5573 6053 4.060038 GACGAAGAACCGGCGGGA 62.060 66.667 31.78 0.00 36.97 5.14
5574 6054 3.984200 GACGAAGAACCGGCGGGAG 62.984 68.421 31.78 15.88 36.97 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.511316 AACGAGGAGGAGGAGGAGGT 61.511 60.000 0.00 0.00 0.00 3.85
4 5 1.215679 AGGAACGAGGAGGAGGAGGA 61.216 60.000 0.00 0.00 0.00 3.71
5 6 0.753848 GAGGAACGAGGAGGAGGAGG 60.754 65.000 0.00 0.00 0.00 4.30
6 7 0.033991 TGAGGAACGAGGAGGAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
7 8 0.323542 GTGAGGAACGAGGAGGAGGA 60.324 60.000 0.00 0.00 0.00 3.71
8 9 1.324005 GGTGAGGAACGAGGAGGAGG 61.324 65.000 0.00 0.00 0.00 4.30
9 10 0.323908 AGGTGAGGAACGAGGAGGAG 60.324 60.000 0.00 0.00 0.00 3.69
10 11 0.323542 GAGGTGAGGAACGAGGAGGA 60.324 60.000 0.00 0.00 0.00 3.71
11 12 0.612174 TGAGGTGAGGAACGAGGAGG 60.612 60.000 0.00 0.00 0.00 4.30
12 13 0.528470 GTGAGGTGAGGAACGAGGAG 59.472 60.000 0.00 0.00 0.00 3.69
13 14 0.112606 AGTGAGGTGAGGAACGAGGA 59.887 55.000 0.00 0.00 0.00 3.71
14 15 1.746220 CTAGTGAGGTGAGGAACGAGG 59.254 57.143 0.00 0.00 0.00 4.63
15 16 1.746220 CCTAGTGAGGTGAGGAACGAG 59.254 57.143 0.00 0.00 38.16 4.18
16 17 1.835494 CCTAGTGAGGTGAGGAACGA 58.165 55.000 0.00 0.00 38.16 3.85
28 29 2.375509 TCTCACTCTCACCACCTAGTGA 59.624 50.000 0.00 0.00 44.47 3.41
29 30 2.752354 CTCTCACTCTCACCACCTAGTG 59.248 54.545 0.00 0.00 40.54 2.74
30 31 2.645297 TCTCTCACTCTCACCACCTAGT 59.355 50.000 0.00 0.00 0.00 2.57
31 32 3.013921 GTCTCTCACTCTCACCACCTAG 58.986 54.545 0.00 0.00 0.00 3.02
32 33 2.615747 CGTCTCTCACTCTCACCACCTA 60.616 54.545 0.00 0.00 0.00 3.08
33 34 1.884497 CGTCTCTCACTCTCACCACCT 60.884 57.143 0.00 0.00 0.00 4.00
34 35 0.523966 CGTCTCTCACTCTCACCACC 59.476 60.000 0.00 0.00 0.00 4.61
35 36 1.198178 GTCGTCTCTCACTCTCACCAC 59.802 57.143 0.00 0.00 0.00 4.16
36 37 1.202770 TGTCGTCTCTCACTCTCACCA 60.203 52.381 0.00 0.00 0.00 4.17
37 38 1.198178 GTGTCGTCTCTCACTCTCACC 59.802 57.143 0.00 0.00 0.00 4.02
38 39 1.198178 GGTGTCGTCTCTCACTCTCAC 59.802 57.143 0.00 0.00 35.26 3.51
39 40 1.202770 TGGTGTCGTCTCTCACTCTCA 60.203 52.381 0.00 0.00 35.26 3.27
40 41 1.466950 CTGGTGTCGTCTCTCACTCTC 59.533 57.143 0.00 0.00 35.26 3.20
41 42 1.529226 CTGGTGTCGTCTCTCACTCT 58.471 55.000 0.00 0.00 35.26 3.24
42 43 0.109504 GCTGGTGTCGTCTCTCACTC 60.110 60.000 0.00 0.00 35.26 3.51
43 44 1.528292 GGCTGGTGTCGTCTCTCACT 61.528 60.000 0.00 0.00 35.26 3.41
44 45 1.080434 GGCTGGTGTCGTCTCTCAC 60.080 63.158 0.00 0.00 0.00 3.51
45 46 2.626780 CGGCTGGTGTCGTCTCTCA 61.627 63.158 0.00 0.00 36.42 3.27
46 47 2.179517 CGGCTGGTGTCGTCTCTC 59.820 66.667 0.00 0.00 36.42 3.20
64 65 1.002921 ATGGATGTCCTGGACGGGA 59.997 57.895 21.15 5.08 34.95 5.14
65 66 1.447643 GATGGATGTCCTGGACGGG 59.552 63.158 21.15 0.00 34.95 5.28
66 67 1.447643 GGATGGATGTCCTGGACGG 59.552 63.158 21.15 0.00 34.95 4.79
67 68 1.050988 AGGGATGGATGTCCTGGACG 61.051 60.000 21.15 0.00 38.38 4.79
68 69 0.761802 GAGGGATGGATGTCCTGGAC 59.238 60.000 19.96 19.96 38.38 4.02
69 70 0.400525 GGAGGGATGGATGTCCTGGA 60.401 60.000 0.00 0.00 38.38 3.86
70 71 1.422161 GGGAGGGATGGATGTCCTGG 61.422 65.000 0.09 0.00 38.38 4.45
71 72 0.401105 AGGGAGGGATGGATGTCCTG 60.401 60.000 0.09 0.00 38.38 3.86
72 73 0.104725 GAGGGAGGGATGGATGTCCT 60.105 60.000 0.09 0.00 38.38 3.85
73 74 1.130678 GGAGGGAGGGATGGATGTCC 61.131 65.000 0.00 0.00 37.56 4.02
74 75 1.130678 GGGAGGGAGGGATGGATGTC 61.131 65.000 0.00 0.00 0.00 3.06
75 76 1.073397 GGGAGGGAGGGATGGATGT 60.073 63.158 0.00 0.00 0.00 3.06
76 77 0.839853 GAGGGAGGGAGGGATGGATG 60.840 65.000 0.00 0.00 0.00 3.51
77 78 1.556561 GAGGGAGGGAGGGATGGAT 59.443 63.158 0.00 0.00 0.00 3.41
78 79 2.727071 GGAGGGAGGGAGGGATGGA 61.727 68.421 0.00 0.00 0.00 3.41
79 80 2.122189 GGAGGGAGGGAGGGATGG 60.122 72.222 0.00 0.00 0.00 3.51
80 81 2.122189 GGGAGGGAGGGAGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
81 82 2.628465 TGGGAGGGAGGGAGGGAT 60.628 66.667 0.00 0.00 0.00 3.85
82 83 3.368501 CTGGGAGGGAGGGAGGGA 61.369 72.222 0.00 0.00 0.00 4.20
83 84 4.505970 CCTGGGAGGGAGGGAGGG 62.506 77.778 0.00 0.00 0.00 4.30
84 85 3.700350 ACCTGGGAGGGAGGGAGG 61.700 72.222 0.00 0.00 40.58 4.30
85 86 2.041405 GACCTGGGAGGGAGGGAG 60.041 72.222 0.00 0.00 40.58 4.30
86 87 3.695825 GGACCTGGGAGGGAGGGA 61.696 72.222 0.00 0.00 40.58 4.20
87 88 4.825679 GGGACCTGGGAGGGAGGG 62.826 77.778 0.00 0.00 40.58 4.30
88 89 3.579451 TTGGGACCTGGGAGGGAGG 62.579 68.421 0.00 0.00 40.58 4.30
89 90 2.124996 TTGGGACCTGGGAGGGAG 59.875 66.667 0.00 0.00 40.58 4.30
90 91 2.204090 GTTGGGACCTGGGAGGGA 60.204 66.667 0.00 0.00 40.58 4.20
91 92 3.339093 GGTTGGGACCTGGGAGGG 61.339 72.222 0.00 0.00 42.99 4.30
92 93 3.339093 GGGTTGGGACCTGGGAGG 61.339 72.222 0.00 0.00 45.75 4.30
93 94 2.531685 TGGGTTGGGACCTGGGAG 60.532 66.667 0.00 0.00 45.75 4.30
94 95 2.531685 CTGGGTTGGGACCTGGGA 60.532 66.667 0.00 0.00 45.75 4.37
95 96 4.366684 GCTGGGTTGGGACCTGGG 62.367 72.222 0.00 0.00 45.75 4.45
96 97 2.371897 AAAGCTGGGTTGGGACCTGG 62.372 60.000 0.00 0.00 45.75 4.45
97 98 1.153756 AAAGCTGGGTTGGGACCTG 59.846 57.895 0.00 0.00 45.75 4.00
98 99 1.153756 CAAAGCTGGGTTGGGACCT 59.846 57.895 0.00 0.00 45.75 3.85
99 100 1.152830 TCAAAGCTGGGTTGGGACC 59.847 57.895 0.00 0.00 45.75 4.46
100 101 1.179174 GGTCAAAGCTGGGTTGGGAC 61.179 60.000 0.00 8.22 0.00 4.46
130 131 1.077716 CGGCGAAGGGAAAGGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
143 154 2.596338 TGAGTGGACTGACGGCGA 60.596 61.111 16.62 0.00 0.00 5.54
156 167 1.383803 GAGGAGGGGATGGCTGAGT 60.384 63.158 0.00 0.00 0.00 3.41
157 168 2.506061 CGAGGAGGGGATGGCTGAG 61.506 68.421 0.00 0.00 0.00 3.35
164 175 2.446802 GGAAGCCGAGGAGGGGAT 60.447 66.667 0.00 0.00 41.48 3.85
196 216 2.801631 GGGCGAGGAGGGTGATGAG 61.802 68.421 0.00 0.00 0.00 2.90
228 248 0.678048 CGGGCAGGAAAGGAAGGAAG 60.678 60.000 0.00 0.00 0.00 3.46
229 249 1.378762 CGGGCAGGAAAGGAAGGAA 59.621 57.895 0.00 0.00 0.00 3.36
230 250 3.077907 CGGGCAGGAAAGGAAGGA 58.922 61.111 0.00 0.00 0.00 3.36
231 251 2.751837 GCGGGCAGGAAAGGAAGG 60.752 66.667 0.00 0.00 0.00 3.46
325 345 3.443045 GATGGGTGCGGTTGCTGG 61.443 66.667 0.00 0.00 43.34 4.85
326 346 3.803082 CGATGGGTGCGGTTGCTG 61.803 66.667 0.00 0.00 43.34 4.41
378 398 0.469518 GAGGCGGGGGTAGTGAGTAT 60.470 60.000 0.00 0.00 0.00 2.12
411 431 3.760035 GAAGGACGGCAGAGCGGA 61.760 66.667 3.52 0.00 33.14 5.54
412 432 4.821589 GGAAGGACGGCAGAGCGG 62.822 72.222 0.00 0.00 35.02 5.52
413 433 3.376935 ATGGAAGGACGGCAGAGCG 62.377 63.158 0.00 0.00 0.00 5.03
414 434 1.817099 CATGGAAGGACGGCAGAGC 60.817 63.158 0.00 0.00 0.00 4.09
415 435 1.153289 CCATGGAAGGACGGCAGAG 60.153 63.158 5.56 0.00 0.00 3.35
416 436 2.989639 CCATGGAAGGACGGCAGA 59.010 61.111 5.56 0.00 0.00 4.26
417 437 2.825836 GCCATGGAAGGACGGCAG 60.826 66.667 18.40 0.00 44.25 4.85
418 438 4.424711 GGCCATGGAAGGACGGCA 62.425 66.667 18.40 0.00 46.75 5.69
419 439 4.115199 AGGCCATGGAAGGACGGC 62.115 66.667 18.40 0.00 43.43 5.68
420 440 2.124570 CAGGCCATGGAAGGACGG 60.125 66.667 18.40 0.00 43.43 4.79
421 441 1.153289 CTCAGGCCATGGAAGGACG 60.153 63.158 18.40 0.00 43.43 4.79
422 442 0.842635 ATCTCAGGCCATGGAAGGAC 59.157 55.000 18.40 0.00 36.73 3.85
465 485 2.485657 GCTCTGCTAGTTAATCACCCCC 60.486 54.545 0.00 0.00 0.00 5.40
467 487 3.133003 TCTGCTCTGCTAGTTAATCACCC 59.867 47.826 0.00 0.00 0.00 4.61
468 488 4.367450 CTCTGCTCTGCTAGTTAATCACC 58.633 47.826 0.00 0.00 0.00 4.02
469 489 4.142049 ACCTCTGCTCTGCTAGTTAATCAC 60.142 45.833 0.00 0.00 0.00 3.06
476 496 1.190643 GGAACCTCTGCTCTGCTAGT 58.809 55.000 0.00 0.00 0.00 2.57
534 554 3.177920 GCACGCGTGAGAGCAGAG 61.178 66.667 41.19 13.39 36.85 3.35
551 584 2.599082 CCGAACTGAGCTAAGCTAAACG 59.401 50.000 0.00 0.00 39.88 3.60
562 595 2.143122 TGATTTCACACCGAACTGAGC 58.857 47.619 0.00 0.00 31.73 4.26
563 596 3.187227 CCTTGATTTCACACCGAACTGAG 59.813 47.826 0.00 0.00 31.73 3.35
567 600 3.982576 AACCTTGATTTCACACCGAAC 57.017 42.857 0.00 0.00 31.73 3.95
589 622 5.589452 GTCTTACTGCTGCTACTAGAAGGTA 59.411 44.000 0.00 0.00 0.00 3.08
601 634 0.670546 TCTTGCCGTCTTACTGCTGC 60.671 55.000 0.00 0.00 0.00 5.25
602 635 1.795768 TTCTTGCCGTCTTACTGCTG 58.204 50.000 0.00 0.00 0.00 4.41
607 640 5.803020 AATCTGAATTCTTGCCGTCTTAC 57.197 39.130 7.05 0.00 0.00 2.34
610 643 4.074970 ACAAATCTGAATTCTTGCCGTCT 58.925 39.130 7.05 0.00 0.00 4.18
611 644 4.425577 ACAAATCTGAATTCTTGCCGTC 57.574 40.909 7.05 0.00 0.00 4.79
613 646 5.051891 AGAACAAATCTGAATTCTTGCCG 57.948 39.130 7.05 0.00 36.88 5.69
615 648 8.940952 AGTAGTAGAACAAATCTGAATTCTTGC 58.059 33.333 7.05 0.00 39.30 4.01
635 714 9.682465 ACAGATGAATGACAACTAGTAGTAGTA 57.318 33.333 10.68 0.00 38.66 1.82
641 720 5.046663 TGGCACAGATGAATGACAACTAGTA 60.047 40.000 0.00 0.00 28.30 1.82
646 725 2.816087 AGTGGCACAGATGAATGACAAC 59.184 45.455 21.41 0.00 41.80 3.32
666 745 3.004734 AGCAAACGAAACCATCCAAGAAG 59.995 43.478 0.00 0.00 0.00 2.85
673 752 4.382754 GTGAATTCAGCAAACGAAACCATC 59.617 41.667 8.80 0.00 0.00 3.51
694 787 1.155889 TTATGAGCGTGGCTTGTGTG 58.844 50.000 0.00 0.00 39.88 3.82
709 806 8.607441 TTAGCAATACAGTAGCAGGAATTATG 57.393 34.615 0.00 0.00 0.00 1.90
711 808 9.273016 GAATTAGCAATACAGTAGCAGGAATTA 57.727 33.333 0.00 0.00 0.00 1.40
717 814 5.050490 ACGGAATTAGCAATACAGTAGCAG 58.950 41.667 0.00 0.00 0.00 4.24
761 858 5.738619 TCAGGCAGTGTTTCTTACAGATA 57.261 39.130 0.00 0.00 37.45 1.98
767 873 6.119536 TCTTTTCTTCAGGCAGTGTTTCTTA 58.880 36.000 0.00 0.00 0.00 2.10
790 896 9.520204 TTCTGAACTGAAAATTGATCTGTTTTC 57.480 29.630 20.05 20.05 42.05 2.29
791 897 9.305925 GTTCTGAACTGAAAATTGATCTGTTTT 57.694 29.630 13.13 7.91 38.54 2.43
792 898 8.689972 AGTTCTGAACTGAAAATTGATCTGTTT 58.310 29.630 21.47 0.00 41.01 2.83
793 899 8.230472 AGTTCTGAACTGAAAATTGATCTGTT 57.770 30.769 21.47 13.24 41.01 3.16
794 900 7.718753 AGAGTTCTGAACTGAAAATTGATCTGT 59.281 33.333 26.47 0.00 43.03 3.41
817 923 4.020751 TGTCAGACAAGAAGGGATTCAGAG 60.021 45.833 0.00 0.00 0.00 3.35
822 928 4.137543 GTGTTGTCAGACAAGAAGGGATT 58.862 43.478 16.68 0.00 39.00 3.01
834 940 2.016318 CAAGCAGGTTGTGTTGTCAGA 58.984 47.619 4.02 0.00 0.00 3.27
841 951 0.901124 TTTTGGCAAGCAGGTTGTGT 59.099 45.000 13.80 0.00 38.55 3.72
848 958 1.404583 GGGTAGCATTTTGGCAAGCAG 60.405 52.381 11.81 2.25 35.83 4.24
854 964 1.780503 AGGATGGGTAGCATTTTGGC 58.219 50.000 0.00 0.00 0.00 4.52
857 967 2.359249 GGGGAAGGATGGGTAGCATTTT 60.359 50.000 0.00 0.00 0.00 1.82
862 972 0.629058 TTTGGGGAAGGATGGGTAGC 59.371 55.000 0.00 0.00 0.00 3.58
863 973 1.063942 GGTTTGGGGAAGGATGGGTAG 60.064 57.143 0.00 0.00 0.00 3.18
867 977 0.704076 TCAGGTTTGGGGAAGGATGG 59.296 55.000 0.00 0.00 0.00 3.51
907 1036 1.666888 CGGTGCTTTGCTTGGAACATC 60.667 52.381 0.00 0.00 39.30 3.06
913 1042 1.526575 ATGGTCGGTGCTTTGCTTGG 61.527 55.000 0.00 0.00 0.00 3.61
925 1054 1.078426 GTCAGGGGAACATGGTCGG 60.078 63.158 4.29 0.00 43.76 4.79
927 1056 0.984230 TCAGTCAGGGGAACATGGTC 59.016 55.000 0.73 0.73 43.76 4.02
930 1059 1.625315 TCAGTCAGTCAGGGGAACATG 59.375 52.381 0.00 0.00 45.31 3.21
1031 1174 0.666577 GTCGTCGTCCCTTGACTTGG 60.667 60.000 0.00 0.00 39.47 3.61
1389 1553 3.706373 GCCTGGACTCCCTTGCGA 61.706 66.667 0.00 0.00 0.00 5.10
1473 1664 9.712305 GCATACAATTGGACTGTAAGATATACT 57.288 33.333 10.83 0.00 37.43 2.12
1474 1665 9.489084 TGCATACAATTGGACTGTAAGATATAC 57.511 33.333 10.83 0.00 37.43 1.47
1491 1682 7.480760 AACTCCTTTTGGTAATGCATACAAT 57.519 32.000 0.00 0.00 41.38 2.71
1530 1721 6.420604 CCAGACCAAATCACATTTGTTGTTAC 59.579 38.462 7.92 0.00 46.22 2.50
1532 1723 5.104982 ACCAGACCAAATCACATTTGTTGTT 60.105 36.000 7.92 0.00 46.22 2.83
1533 1724 4.405358 ACCAGACCAAATCACATTTGTTGT 59.595 37.500 7.92 0.80 46.22 3.32
1542 1733 2.229792 TGCAGAACCAGACCAAATCAC 58.770 47.619 0.00 0.00 0.00 3.06
1544 1735 3.350833 AGATGCAGAACCAGACCAAATC 58.649 45.455 0.00 0.00 0.00 2.17
1550 1741 3.817647 AGTTTGAAGATGCAGAACCAGAC 59.182 43.478 0.00 0.00 0.00 3.51
1551 1742 4.067896 GAGTTTGAAGATGCAGAACCAGA 58.932 43.478 0.00 0.00 0.00 3.86
1567 1760 4.572985 TGGTTTCAAGATGCAGAGTTTG 57.427 40.909 0.00 0.00 0.00 2.93
1573 1766 3.119245 CCTGGATTGGTTTCAAGATGCAG 60.119 47.826 0.00 0.00 36.19 4.41
1574 1767 2.827322 CCTGGATTGGTTTCAAGATGCA 59.173 45.455 0.00 0.00 36.19 3.96
1575 1768 3.091545 TCCTGGATTGGTTTCAAGATGC 58.908 45.455 0.00 0.00 36.19 3.91
1576 1769 5.927281 AATCCTGGATTGGTTTCAAGATG 57.073 39.130 20.76 0.00 36.19 2.90
1612 1805 8.463930 ACTGAATGGATTGTTCTCTAAACAAA 57.536 30.769 7.36 0.00 42.57 2.83
1615 1808 7.201652 GCCTACTGAATGGATTGTTCTCTAAAC 60.202 40.741 0.00 0.00 0.00 2.01
1618 1811 5.163301 GGCCTACTGAATGGATTGTTCTCTA 60.163 44.000 0.00 0.00 0.00 2.43
1619 1812 4.384647 GGCCTACTGAATGGATTGTTCTCT 60.385 45.833 0.00 0.00 0.00 3.10
1621 1814 3.372025 GGGCCTACTGAATGGATTGTTCT 60.372 47.826 0.84 0.00 0.00 3.01
1625 1818 2.579873 CAGGGCCTACTGAATGGATTG 58.420 52.381 5.28 0.00 40.97 2.67
1650 1843 1.021202 CTATGCCGCATTTCCCGAAA 58.979 50.000 11.97 0.00 34.46 3.46
1738 1932 5.421056 CACTGGTTGACTCACTATACCCTAA 59.579 44.000 0.00 0.00 0.00 2.69
1782 1976 9.116067 TGTTTACAACTTTAGATTAGCTGTTGT 57.884 29.630 16.20 16.20 46.11 3.32
1788 1982 9.821662 ACGATTTGTTTACAACTTTAGATTAGC 57.178 29.630 0.00 0.00 35.28 3.09
1791 1985 9.821662 GCTACGATTTGTTTACAACTTTAGATT 57.178 29.630 0.00 0.00 35.28 2.40
1792 1986 8.995220 TGCTACGATTTGTTTACAACTTTAGAT 58.005 29.630 0.00 0.00 35.28 1.98
1793 1987 8.367943 TGCTACGATTTGTTTACAACTTTAGA 57.632 30.769 0.00 0.00 35.28 2.10
1794 1988 8.280497 ACTGCTACGATTTGTTTACAACTTTAG 58.720 33.333 0.00 0.00 35.28 1.85
1795 1989 8.145316 ACTGCTACGATTTGTTTACAACTTTA 57.855 30.769 0.00 0.00 35.28 1.85
1796 1990 7.023197 ACTGCTACGATTTGTTTACAACTTT 57.977 32.000 0.00 0.00 35.28 2.66
1832 2026 2.160417 GCTGGAATAATATGCTCGGTGC 59.840 50.000 0.00 0.00 43.25 5.01
1836 2030 6.072838 ACTGAAATGCTGGAATAATATGCTCG 60.073 38.462 0.00 0.00 0.00 5.03
1848 2042 3.243501 GCAAGTTGAACTGAAATGCTGGA 60.244 43.478 7.16 0.00 0.00 3.86
1886 2080 5.062809 GCTAGATTACAGTGCAAGTGACTTC 59.937 44.000 0.00 0.00 40.62 3.01
1942 2136 5.595542 TGCCCCTGAAGAAAGATGAATAATG 59.404 40.000 0.00 0.00 0.00 1.90
2048 2242 1.143838 CATTCCCCGCTCATCGTCA 59.856 57.895 0.00 0.00 36.19 4.35
2138 2335 4.034285 TCTCATCGGCCATGATAGAGTA 57.966 45.455 15.42 4.48 40.95 2.59
2144 2341 3.497103 TTCAATCTCATCGGCCATGAT 57.503 42.857 15.42 3.14 40.95 2.45
2153 2350 7.518689 GCATCAAGAGCTACTTTCAATCTCATC 60.519 40.741 0.00 0.00 36.61 2.92
2186 2383 1.202568 TCATGCAGATACTTGAGCCCG 60.203 52.381 0.00 0.00 0.00 6.13
2240 2437 8.389779 TCAGTTAGTTTTTGTATTGATCAGCA 57.610 30.769 0.00 0.00 0.00 4.41
2309 2549 4.860907 GCATGTGTTCCTTATTTTGCTGAG 59.139 41.667 0.00 0.00 0.00 3.35
2593 2833 8.668510 ATCCACATCTTTAGAACATCATACAC 57.331 34.615 0.00 0.00 0.00 2.90
2884 3154 4.151335 CGCTTGTAGATATAGCTGGCTTTG 59.849 45.833 0.00 0.00 32.80 2.77
2906 3176 5.388890 GCTCACAAAATCACTACTCTTGTCG 60.389 44.000 0.00 0.00 0.00 4.35
3125 3411 4.873810 AGGTGGCAGCGCACACAA 62.874 61.111 24.39 0.18 39.31 3.33
3172 3458 6.645306 AGAATCTCCTACAACTTCTAAAGGC 58.355 40.000 0.00 0.00 0.00 4.35
3225 3511 4.754322 ACTAAACAAAGTGGCAAACAAGG 58.246 39.130 0.00 0.00 0.00 3.61
3287 3573 8.040716 ACCATGTTTTAGGAAAAGTTATCTCG 57.959 34.615 0.00 0.00 0.00 4.04
3355 3649 7.887381 ACACCGAAACAATTATACCATTTGAA 58.113 30.769 0.00 0.00 0.00 2.69
3384 3678 3.574284 TGCACATTTAAGCATCCACAC 57.426 42.857 0.00 0.00 35.51 3.82
3518 3812 4.202305 ACTGTGAAGCTGCTAGAAGAAACT 60.202 41.667 0.90 0.00 0.00 2.66
3611 3905 5.527033 ACCGAACTCTTGTTACTTGTAGAC 58.473 41.667 0.00 0.00 36.39 2.59
3668 3962 1.632422 GAAAGCATGCAAATCACCCG 58.368 50.000 21.98 0.00 0.00 5.28
3724 4018 6.796705 AACCAAACTAATGTCTTCCTAACG 57.203 37.500 0.00 0.00 0.00 3.18
3969 4277 6.825213 TGGATGATCAAGGAAGTATCAAGTTG 59.175 38.462 0.00 0.00 33.60 3.16
3980 4288 8.772250 AGTTAGTTAAGATGGATGATCAAGGAA 58.228 33.333 0.00 0.00 32.86 3.36
3983 4291 9.829507 AGAAGTTAGTTAAGATGGATGATCAAG 57.170 33.333 0.00 0.00 32.86 3.02
4032 4340 9.661563 AACGATCTGTTGAACCATAAGTATTTA 57.338 29.630 0.00 0.00 40.00 1.40
4048 4356 4.087182 TCCTAGAGTTCCAACGATCTGTT 58.913 43.478 0.00 0.00 43.09 3.16
4053 4361 3.004524 GCGTATCCTAGAGTTCCAACGAT 59.995 47.826 0.00 0.00 0.00 3.73
4055 4363 2.543238 GGCGTATCCTAGAGTTCCAACG 60.543 54.545 0.00 0.00 0.00 4.10
4082 4390 0.248458 GCCCGGTTTGCATGTATTCG 60.248 55.000 0.00 0.00 0.00 3.34
4085 4393 2.770589 GCGCCCGGTTTGCATGTAT 61.771 57.895 0.00 0.00 0.00 2.29
4178 4486 4.338710 CCCTTTGGGCGGTTCCGA 62.339 66.667 15.69 0.00 35.35 4.55
4235 4543 2.741211 GGGAACCGCTTGACGTCC 60.741 66.667 14.12 0.00 40.86 4.79
4271 4579 1.255667 GGTCGTAGTGGCCCTCAAGA 61.256 60.000 0.00 0.00 0.00 3.02
4274 4582 1.681327 GAGGTCGTAGTGGCCCTCA 60.681 63.158 0.00 0.00 42.51 3.86
4280 4588 1.254026 TGGACTTGAGGTCGTAGTGG 58.746 55.000 0.00 0.00 45.35 4.00
4287 4595 2.485814 GCTTTGTCATGGACTTGAGGTC 59.514 50.000 0.00 0.00 43.79 3.85
4346 4654 2.202756 ATCTTCGGGCGCGTCTTC 60.203 61.111 23.19 0.00 0.00 2.87
4560 4868 4.439289 GCATCCATTTCAGCAGGTCTTTAC 60.439 45.833 0.00 0.00 0.00 2.01
4589 4899 0.114364 TACAGTCACAGGCAGGAGGA 59.886 55.000 0.00 0.00 0.00 3.71
4590 4900 0.976641 TTACAGTCACAGGCAGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
4718 5030 1.273606 TGCAGCTCAGACCAGAGTAAC 59.726 52.381 0.00 0.00 37.94 2.50
4751 5064 2.377880 CAAAAACGCAAACGACCTACC 58.622 47.619 0.00 0.00 43.93 3.18
4764 5077 2.099098 AGCTGAAACTGGACCAAAAACG 59.901 45.455 0.00 0.00 0.00 3.60
4806 5119 8.698973 TTAGTACTCTCTATTCTGCTAGCAAT 57.301 34.615 19.86 12.86 0.00 3.56
4820 5133 9.502091 TTTGCACAAACAATATTAGTACTCTCT 57.498 29.630 0.00 0.00 0.00 3.10
4822 5135 9.893305 GTTTTGCACAAACAATATTAGTACTCT 57.107 29.630 0.00 0.00 0.00 3.24
4823 5136 9.124807 GGTTTTGCACAAACAATATTAGTACTC 57.875 33.333 19.25 2.22 32.04 2.59
4824 5137 8.085909 GGGTTTTGCACAAACAATATTAGTACT 58.914 33.333 19.25 0.00 32.04 2.73
4845 5158 5.810095 TGAAAAATGACAGGTTTTGGGTTT 58.190 33.333 4.76 0.00 0.00 3.27
4849 5162 5.236911 CCACATGAAAAATGACAGGTTTTGG 59.763 40.000 0.00 0.00 0.00 3.28
4989 5342 1.586422 CACCCAGCACCAGATATTCG 58.414 55.000 0.00 0.00 0.00 3.34
4999 5352 0.036671 GTACCTGTACCACCCAGCAC 60.037 60.000 0.00 0.00 0.00 4.40
5088 5441 3.571401 AGAAATTCTCCCAGTTGCACAAG 59.429 43.478 0.00 0.00 0.00 3.16
5093 5446 2.893489 ACCAAGAAATTCTCCCAGTTGC 59.107 45.455 0.00 0.00 0.00 4.17
5125 5478 4.211125 CTGACTTGTAGCCTCCTCTATGA 58.789 47.826 0.00 0.00 0.00 2.15
5153 5616 0.963225 TGGACAGTCCGATCGAAACA 59.037 50.000 18.66 2.71 40.17 2.83
5154 5617 1.336517 TGTGGACAGTCCGATCGAAAC 60.337 52.381 18.66 14.24 40.17 2.78
5171 5634 7.369607 TCTTGTAACAAATGATCAACCATGTG 58.630 34.615 0.00 0.00 37.69 3.21
5193 5656 9.558396 GAGATTTTGGTCATCATCTATTCTCTT 57.442 33.333 0.00 0.00 0.00 2.85
5200 5663 5.684704 GGTGGAGATTTTGGTCATCATCTA 58.315 41.667 0.00 0.00 0.00 1.98
5210 5673 5.048713 GGATTATTAGCGGTGGAGATTTTGG 60.049 44.000 0.00 0.00 0.00 3.28
5226 5689 3.568007 GCATGACCTTTGCCGGATTATTA 59.432 43.478 5.05 0.00 33.95 0.98
5299 5779 1.137086 CACAATCTACAGGCTACGGCT 59.863 52.381 0.00 0.00 39.66 5.52
5302 5782 2.196749 CAGCACAATCTACAGGCTACG 58.803 52.381 0.00 0.00 32.71 3.51
5381 5861 6.328410 AGGAGATGTTGTCATGATGGAATAGA 59.672 38.462 0.00 0.00 34.06 1.98
5382 5862 6.531923 AGGAGATGTTGTCATGATGGAATAG 58.468 40.000 0.00 0.00 34.06 1.73
5383 5863 6.505048 AGGAGATGTTGTCATGATGGAATA 57.495 37.500 0.00 0.00 34.06 1.75
5384 5864 5.384145 AGGAGATGTTGTCATGATGGAAT 57.616 39.130 0.00 0.00 34.06 3.01
5385 5865 4.849813 AGGAGATGTTGTCATGATGGAA 57.150 40.909 0.00 0.00 34.06 3.53
5386 5866 4.384537 GGAAGGAGATGTTGTCATGATGGA 60.385 45.833 0.00 0.00 34.06 3.41
5387 5867 3.881688 GGAAGGAGATGTTGTCATGATGG 59.118 47.826 0.00 0.00 34.06 3.51
5388 5868 4.778579 AGGAAGGAGATGTTGTCATGATG 58.221 43.478 0.00 0.00 34.06 3.07
5389 5869 4.141528 GGAGGAAGGAGATGTTGTCATGAT 60.142 45.833 0.00 0.00 34.06 2.45
5390 5870 3.198635 GGAGGAAGGAGATGTTGTCATGA 59.801 47.826 0.00 0.00 34.06 3.07
5394 5874 1.210722 GGGGAGGAAGGAGATGTTGTC 59.789 57.143 0.00 0.00 0.00 3.18
5396 5876 1.289160 TGGGGAGGAAGGAGATGTTG 58.711 55.000 0.00 0.00 0.00 3.33
5421 5901 1.420138 ACCATGTCACCGGAGAAAAGT 59.580 47.619 9.46 0.00 0.00 2.66
5422 5902 1.806542 CACCATGTCACCGGAGAAAAG 59.193 52.381 9.46 0.00 0.00 2.27
5423 5903 1.890876 CACCATGTCACCGGAGAAAA 58.109 50.000 9.46 0.00 0.00 2.29
5465 5945 1.997874 ACCACAGGGAGATCTGCCC 60.998 63.158 28.05 22.32 46.40 5.36
5516 5996 2.125832 TCAACCGGTCCGATTCGC 60.126 61.111 14.39 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.