Multiple sequence alignment - TraesCS6B01G434300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434300 chr6B 100.000 6490 0 0 384 6873 702824544 702831033 0.000000e+00 11985.0
1 TraesCS6B01G434300 chr6B 96.899 129 4 0 1923 2051 702826041 702826169 4.170000e-52 217.0
2 TraesCS6B01G434300 chr6B 96.899 129 4 0 1881 2009 702826083 702826211 4.170000e-52 217.0
3 TraesCS6B01G434300 chr6B 95.276 127 5 1 6657 6782 536817883 536817757 4.200000e-47 200.0
4 TraesCS6B01G434300 chr6B 95.402 87 4 0 1965 2051 702826041 702826127 9.300000e-29 139.0
5 TraesCS6B01G434300 chr6B 95.402 87 4 0 1881 1967 702826125 702826211 9.300000e-29 139.0
6 TraesCS6B01G434300 chr6B 100.000 58 0 0 1 58 702824161 702824218 2.620000e-19 108.0
7 TraesCS6B01G434300 chr6B 100.000 31 0 0 4575 4605 601199574 601199604 2.680000e-04 58.4
8 TraesCS6B01G434300 chr6A 94.165 4182 171 36 387 4525 607951207 607955358 0.000000e+00 6303.0
9 TraesCS6B01G434300 chr6A 94.110 1545 58 15 4866 6398 607955562 607957085 0.000000e+00 2318.0
10 TraesCS6B01G434300 chr6A 89.610 308 19 7 6336 6632 607957077 607957382 5.030000e-101 379.0
11 TraesCS6B01G434300 chr6A 96.124 129 5 0 1881 2009 607952741 607952869 1.940000e-50 211.0
12 TraesCS6B01G434300 chr6A 95.122 123 6 0 1923 2045 607952699 607952821 1.960000e-45 195.0
13 TraesCS6B01G434300 chr6A 90.345 145 13 1 6639 6782 222571223 222571367 9.100000e-44 189.0
14 TraesCS6B01G434300 chr6A 96.552 87 3 0 1965 2051 607952699 607952785 2.000000e-30 145.0
15 TraesCS6B01G434300 chr6A 93.103 87 6 0 1881 1967 607952783 607952869 2.010000e-25 128.0
16 TraesCS6B01G434300 chr6A 89.333 75 7 1 6799 6872 607957408 607957482 7.340000e-15 93.5
17 TraesCS6B01G434300 chr6A 100.000 46 0 0 2007 2052 607952699 607952744 1.230000e-12 86.1
18 TraesCS6B01G434300 chr6A 97.143 35 1 0 1 35 607951123 607951157 7.440000e-05 60.2
19 TraesCS6B01G434300 chr6D 96.140 1710 54 6 2826 4525 461356412 461358119 0.000000e+00 2782.0
20 TraesCS6B01G434300 chr6D 95.860 1546 46 11 4866 6398 461358325 461359865 0.000000e+00 2484.0
21 TraesCS6B01G434300 chr6D 91.879 1650 74 25 389 2009 461353978 461355596 0.000000e+00 2250.0
22 TraesCS6B01G434300 chr6D 96.798 937 27 1 1923 2859 461355468 461356401 0.000000e+00 1561.0
23 TraesCS6B01G434300 chr6D 93.407 273 14 2 6394 6662 461360464 461360736 1.070000e-107 401.0
24 TraesCS6B01G434300 chr6D 91.875 160 10 2 4595 4752 461358121 461358279 3.230000e-53 220.0
25 TraesCS6B01G434300 chr6D 92.683 82 6 0 3406 3487 471973108 471973189 1.210000e-22 119.0
26 TraesCS6B01G434300 chr6D 92.683 82 6 0 3406 3487 472033447 472033528 1.210000e-22 119.0
27 TraesCS6B01G434300 chr6D 93.243 74 5 0 6799 6872 461360731 461360804 7.290000e-20 110.0
28 TraesCS6B01G434300 chr6D 100.000 45 0 0 2007 2051 461355468 461355512 4.420000e-12 84.2
29 TraesCS6B01G434300 chr6D 85.714 70 10 0 4751 4820 452542132 452542063 2.660000e-09 75.0
30 TraesCS6B01G434300 chr6D 100.000 33 0 0 1 33 461353916 461353948 2.070000e-05 62.1
31 TraesCS6B01G434300 chr6D 100.000 29 0 0 4575 4603 90112378 90112406 3.000000e-03 54.7
32 TraesCS6B01G434300 chr1B 83.748 1286 120 41 2980 4225 655101572 655100336 0.000000e+00 1134.0
33 TraesCS6B01G434300 chr1B 83.851 322 40 10 5119 5435 655101894 655101580 5.210000e-76 296.0
34 TraesCS6B01G434300 chr1B 94.488 127 6 1 6657 6782 336774580 336774454 1.960000e-45 195.0
35 TraesCS6B01G434300 chr1B 90.845 142 11 2 6645 6784 628050671 628050812 9.100000e-44 189.0
36 TraesCS6B01G434300 chr1D 85.000 700 71 11 2973 3672 471300325 471299660 0.000000e+00 680.0
37 TraesCS6B01G434300 chr1D 80.720 778 88 40 4855 5609 471295177 471294439 3.620000e-152 549.0
38 TraesCS6B01G434300 chr1D 84.239 552 78 7 3768 4315 471433335 471433881 4.720000e-146 529.0
39 TraesCS6B01G434300 chr1D 81.625 517 77 10 5076 5579 471299652 471299141 4.960000e-111 412.0
40 TraesCS6B01G434300 chr1D 82.283 508 58 21 5119 5608 471297174 471296681 1.780000e-110 411.0
41 TraesCS6B01G434300 chr1D 84.791 263 33 7 5177 5434 471300593 471300333 2.460000e-64 257.0
42 TraesCS6B01G434300 chr3D 84.556 259 32 5 5117 5370 461201987 461202242 4.120000e-62 250.0
43 TraesCS6B01G434300 chr3D 100.000 32 0 0 4575 4606 540255565 540255534 7.440000e-05 60.2
44 TraesCS6B01G434300 chr7D 83.398 259 34 6 5117 5370 29534949 29534695 1.490000e-56 231.0
45 TraesCS6B01G434300 chr7D 77.397 146 29 4 4069 4212 224055477 224055620 4.420000e-12 84.2
46 TraesCS6B01G434300 chr7D 100.000 29 0 0 4575 4603 579085067 579085039 3.000000e-03 54.7
47 TraesCS6B01G434300 chr3B 89.809 157 11 4 6124 6280 611679535 611679686 5.440000e-46 196.0
48 TraesCS6B01G434300 chr3B 93.182 132 8 1 6652 6782 749713698 749713567 7.030000e-45 193.0
49 TraesCS6B01G434300 chr3B 100.000 29 0 0 4575 4603 623148197 623148169 3.000000e-03 54.7
50 TraesCS6B01G434300 chrUn 92.424 132 10 0 6653 6784 18079130 18078999 9.100000e-44 189.0
51 TraesCS6B01G434300 chr5B 92.424 132 9 1 6652 6782 531298070 531298201 3.270000e-43 187.0
52 TraesCS6B01G434300 chr7A 89.262 149 15 1 6635 6782 724232573 724232721 1.180000e-42 185.0
53 TraesCS6B01G434300 chr7A 77.397 146 29 4 4069 4212 237519436 237519293 4.420000e-12 84.2
54 TraesCS6B01G434300 chr2B 89.796 147 12 2 6660 6805 404424350 404424494 1.180000e-42 185.0
55 TraesCS6B01G434300 chr2B 90.741 54 1 4 4058 4109 31624435 31624486 1.240000e-07 69.4
56 TraesCS6B01G434300 chr2B 100.000 30 0 0 4575 4604 799591261 799591290 1.000000e-03 56.5
57 TraesCS6B01G434300 chr7B 76.712 146 30 4 4069 4212 173864858 173865001 2.060000e-10 78.7
58 TraesCS6B01G434300 chr7B 95.652 46 2 0 4780 4825 98978763 98978718 2.660000e-09 75.0
59 TraesCS6B01G434300 chr7B 93.182 44 3 0 4779 4822 86332042 86332085 1.600000e-06 65.8
60 TraesCS6B01G434300 chr5D 89.091 55 6 0 4073 4127 40994882 40994828 1.240000e-07 69.4
61 TraesCS6B01G434300 chr5D 96.875 32 0 1 4573 4604 1799178 1799208 1.200000e-02 52.8
62 TraesCS6B01G434300 chr2A 89.091 55 6 0 4073 4127 20822252 20822198 1.240000e-07 69.4
63 TraesCS6B01G434300 chr4D 97.059 34 0 1 4575 4607 77127811 77127778 1.000000e-03 56.5
64 TraesCS6B01G434300 chr1A 96.875 32 1 0 4572 4603 292086189 292086220 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434300 chr6B 702824161 702831033 6872 False 6046.500000 11985 100.000000 1 6873 2 chr6B.!!$F2 6872
1 TraesCS6B01G434300 chr6A 607951123 607957482 6359 False 991.880000 6303 94.526200 1 6872 10 chr6A.!!$F2 6871
2 TraesCS6B01G434300 chr6D 461353916 461360804 6888 False 1106.033333 2782 95.466889 1 6872 9 chr6D.!!$F4 6871
3 TraesCS6B01G434300 chr1B 655100336 655101894 1558 True 715.000000 1134 83.799500 2980 5435 2 chr1B.!!$R2 2455
4 TraesCS6B01G434300 chr1D 471433335 471433881 546 False 529.000000 529 84.239000 3768 4315 1 chr1D.!!$F1 547
5 TraesCS6B01G434300 chr1D 471294439 471300593 6154 True 461.800000 680 82.883800 2973 5609 5 chr1D.!!$R1 2636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 948 0.595825 GTGCTTGCTGTGTTTCAGGC 60.596 55.000 0.00 0.00 43.78 4.85 F
1576 1610 0.468771 AGCTGATGGGCTTATTGGGC 60.469 55.000 0.00 0.00 39.86 5.36 F
2410 2447 0.536724 GGGGAACAACATGGCCAATC 59.463 55.000 10.96 1.28 0.00 2.67 F
3333 3432 1.003233 GAGCACCACTGGAGGAACC 60.003 63.158 0.71 0.00 39.54 3.62 F
3892 4010 1.181786 AATGTATGGTTGCCGGGTTG 58.818 50.000 2.18 0.00 0.00 3.77 F
4564 4701 0.102120 TTTCGGTTGCAAGTTGGCAG 59.898 50.000 0.00 0.00 45.88 4.85 F
4704 4841 0.473886 ACTTCCTGCCCAGTACCACT 60.474 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2855 2892 1.014352 GGGAACACACACACACAGAC 58.986 55.000 0.00 0.00 0.00 3.51 R
3225 3316 1.476891 TGGCTAGATGTCGGACTTGAC 59.523 52.381 9.88 0.00 39.37 3.18 R
4334 4464 0.683412 TGATCTCCTCCATCATGGCG 59.317 55.000 0.00 0.00 37.47 5.69 R
4545 4682 0.102120 CTGCCAACTTGCAACCGAAA 59.898 50.000 0.00 0.00 41.51 3.46 R
4994 5162 0.181587 TGCGTTCTTCTGGTTTCCCA 59.818 50.000 0.00 0.00 38.87 4.37 R
5744 6628 0.248458 AAGAAGCAAACAACCACGCG 60.248 50.000 3.53 3.53 0.00 6.01 R
6562 8343 3.369756 GCATGCAAATGTTCTTGTGATGG 59.630 43.478 14.21 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
461 462 1.228276 GGGCTCCGATTGATTCCCC 60.228 63.158 0.00 0.00 32.32 4.81
462 463 1.228276 GGCTCCGATTGATTCCCCC 60.228 63.158 0.00 0.00 0.00 5.40
513 518 3.012518 CCTAACTCAACCTGCTTGGATG 58.987 50.000 3.40 2.29 39.66 3.51
528 533 3.788227 TGGATGATTATTCTTCCCGGG 57.212 47.619 16.85 16.85 42.75 5.73
567 572 2.286121 TTCCTCCCCAATCCGCCT 60.286 61.111 0.00 0.00 0.00 5.52
568 573 2.330924 CTTCCTCCCCAATCCGCCTC 62.331 65.000 0.00 0.00 0.00 4.70
569 574 3.089874 CCTCCCCAATCCGCCTCA 61.090 66.667 0.00 0.00 0.00 3.86
581 586 2.785258 GCCTCACGTTGCCGATTC 59.215 61.111 0.00 0.00 37.88 2.52
582 587 2.750888 GCCTCACGTTGCCGATTCC 61.751 63.158 0.00 0.00 37.88 3.01
737 746 3.071023 TGCTATCCGGGTAGAGAAATTGG 59.929 47.826 26.35 0.00 0.00 3.16
738 747 3.071167 GCTATCCGGGTAGAGAAATTGGT 59.929 47.826 26.35 0.00 0.00 3.67
743 752 3.439129 CCGGGTAGAGAAATTGGTGAAAC 59.561 47.826 0.00 0.00 0.00 2.78
759 768 2.297033 TGAAACCAGCTTGGAATTCAGC 59.703 45.455 7.93 8.68 40.96 4.26
770 779 1.598882 GAATTCAGCCCGATTCCCTC 58.401 55.000 0.00 0.00 0.00 4.30
791 800 3.064820 TCTCGCTTGTGTTTGGTTTCTTC 59.935 43.478 0.00 0.00 0.00 2.87
792 801 3.013921 TCGCTTGTGTTTGGTTTCTTCT 58.986 40.909 0.00 0.00 0.00 2.85
793 802 4.193090 TCGCTTGTGTTTGGTTTCTTCTA 58.807 39.130 0.00 0.00 0.00 2.10
841 852 4.909894 TGATCGTTCTCTGTAGTTCATCG 58.090 43.478 0.00 0.00 0.00 3.84
892 920 5.220416 GGTGTGAAATTCGGAGTTCTAATCG 60.220 44.000 5.37 0.00 31.42 3.34
911 939 4.988598 CGTCCCGGTGCTTGCTGT 62.989 66.667 0.00 0.00 0.00 4.40
920 948 0.595825 GTGCTTGCTGTGTTTCAGGC 60.596 55.000 0.00 0.00 43.78 4.85
940 968 4.308458 CGTGTGGGAACGAGGCCA 62.308 66.667 5.01 0.00 46.49 5.36
941 969 2.112297 GTGTGGGAACGAGGCCAA 59.888 61.111 5.01 0.00 0.00 4.52
942 970 1.966451 GTGTGGGAACGAGGCCAAG 60.966 63.158 5.01 0.00 0.00 3.61
944 972 1.376037 GTGGGAACGAGGCCAAGAG 60.376 63.158 5.01 0.00 0.00 2.85
945 973 2.436824 GGGAACGAGGCCAAGAGC 60.437 66.667 5.01 0.00 42.60 4.09
946 974 2.347490 GGAACGAGGCCAAGAGCA 59.653 61.111 5.01 0.00 46.50 4.26
947 975 1.743252 GGAACGAGGCCAAGAGCAG 60.743 63.158 5.01 0.00 46.50 4.24
948 976 1.743252 GAACGAGGCCAAGAGCAGG 60.743 63.158 5.01 0.00 46.50 4.85
983 1011 2.436115 GGCCGGCTAAGTGACCAC 60.436 66.667 28.56 0.41 0.00 4.16
993 1021 2.983725 AAGTGACCACCAAGGCTGCC 62.984 60.000 11.65 11.65 43.14 4.85
1038 1066 1.918800 CCCCACCTTCGAGGACCTT 60.919 63.158 0.00 0.00 37.67 3.50
1080 1108 1.283029 CTCATGGACCAGAACCACCAT 59.717 52.381 0.00 0.00 42.83 3.55
1084 1118 1.074775 GACCAGAACCACCATGGCA 59.925 57.895 13.04 0.00 42.67 4.92
1089 1123 3.918253 GAACCACCATGGCAGCGGA 62.918 63.158 13.04 0.00 42.67 5.54
1320 1354 4.785453 CTCAACCCGAGGCTGCCC 62.785 72.222 16.57 6.06 38.18 5.36
1452 1486 3.965539 CTTCTCGGTGCAGCCAGGG 62.966 68.421 10.90 0.00 36.97 4.45
1485 1519 2.351706 ACGGAGTGGACTATCTCCTC 57.648 55.000 9.11 0.00 45.57 3.71
1548 1582 2.179517 CAGTCGTCGGAGTGGCTC 59.820 66.667 0.00 0.00 39.49 4.70
1576 1610 0.468771 AGCTGATGGGCTTATTGGGC 60.469 55.000 0.00 0.00 39.86 5.36
1638 1672 2.048603 GGATGCCCTGCAGGTTGAC 61.049 63.158 30.63 18.15 43.65 3.18
1649 1683 5.393461 CCCTGCAGGTTGACAATATTTTCTC 60.393 44.000 30.63 0.00 0.00 2.87
1667 1701 5.900865 TTCTCATTGCATTTGCTGTGATA 57.099 34.783 3.94 0.00 42.66 2.15
1668 1702 5.494632 TCTCATTGCATTTGCTGTGATAG 57.505 39.130 3.94 0.00 42.66 2.08
1669 1703 4.945543 TCTCATTGCATTTGCTGTGATAGT 59.054 37.500 3.94 0.00 42.66 2.12
1670 1704 4.989044 TCATTGCATTTGCTGTGATAGTG 58.011 39.130 3.94 0.00 42.66 2.74
1671 1705 4.460034 TCATTGCATTTGCTGTGATAGTGT 59.540 37.500 3.94 0.00 42.66 3.55
1672 1706 3.835378 TGCATTTGCTGTGATAGTGTG 57.165 42.857 3.94 0.00 42.66 3.82
1673 1707 3.410508 TGCATTTGCTGTGATAGTGTGA 58.589 40.909 3.94 0.00 42.66 3.58
1674 1708 4.011698 TGCATTTGCTGTGATAGTGTGAT 58.988 39.130 3.94 0.00 42.66 3.06
1675 1709 4.095334 TGCATTTGCTGTGATAGTGTGATC 59.905 41.667 3.94 0.00 42.66 2.92
1694 1728 9.606631 GTGTGATCATAGATTCTTTAACCTTCT 57.393 33.333 0.00 0.00 0.00 2.85
1772 1806 4.078639 AGGCTACTTCTACAATGCATCC 57.921 45.455 0.00 0.00 0.00 3.51
1925 1962 2.880443 TGCTTTTGAGAGCCCAAATCT 58.120 42.857 0.00 0.00 42.01 2.40
1957 1994 1.750193 TAGCCGGAATGCTTTTGAGG 58.250 50.000 5.05 0.00 42.75 3.86
1962 1999 1.512694 GAATGCTTTTGAGGGCCCG 59.487 57.895 18.44 0.97 0.00 6.13
2051 2088 1.895131 TGCTTTTGAGAGCCCAAATCC 59.105 47.619 0.00 0.00 42.01 3.01
2073 2110 3.066064 CAGTAAGGTCCTCTGAGTCATCG 59.934 52.174 3.66 0.00 0.00 3.84
2085 2122 1.728971 GAGTCATCGAAGGCACAACTG 59.271 52.381 0.00 0.00 0.00 3.16
2125 2162 1.281867 TGAATGGCTTTCGGTCTGGAT 59.718 47.619 8.39 0.00 37.13 3.41
2410 2447 0.536724 GGGGAACAACATGGCCAATC 59.463 55.000 10.96 1.28 0.00 2.67
2556 2593 2.092429 TGAAGAGCCGATAAATGCCCTT 60.092 45.455 0.00 0.00 0.00 3.95
2600 2637 4.772624 TGGTAGCAGTCACTTGAGTAATCT 59.227 41.667 0.00 0.00 0.00 2.40
2730 2767 3.686016 TCTCTACCAAAACCTGAATGGC 58.314 45.455 0.00 0.00 40.22 4.40
2785 2822 3.188460 TGCAAAGGCTAATTCACGAAGTC 59.812 43.478 0.00 0.00 39.43 3.01
2833 2870 5.654650 CACCTGAATACTGGTACTCTCTCTT 59.345 44.000 0.00 0.00 44.51 2.85
2845 2882 4.675063 ACTCTCTCTTTCCCTCTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
2855 2892 4.235079 TCCCTCTCTCTTTCTCTCTCTG 57.765 50.000 0.00 0.00 0.00 3.35
2898 2983 5.975693 TTGTTTCCTGACTTGTGTTTTCT 57.024 34.783 0.00 0.00 0.00 2.52
2901 2986 4.370364 TTCCTGACTTGTGTTTTCTTGC 57.630 40.909 0.00 0.00 0.00 4.01
2933 3018 6.095377 GTGAATATGCCAACCTTCTTTCAAG 58.905 40.000 0.00 0.00 0.00 3.02
3234 3325 3.378112 ACATGGCATATTTGTCAAGTCCG 59.622 43.478 0.00 0.00 41.66 4.79
3291 3382 3.702147 CAGGCAAGGAGATAGGCTG 57.298 57.895 0.00 0.00 46.99 4.85
3333 3432 1.003233 GAGCACCACTGGAGGAACC 60.003 63.158 0.71 0.00 39.54 3.62
3499 3598 7.942341 TCCTGGATTTAAACTGAGTATTGTTGT 59.058 33.333 0.00 0.00 0.00 3.32
3550 3655 1.592131 CTCTGCAGCTCGGATCAGC 60.592 63.158 9.47 0.00 39.99 4.26
3651 3764 2.414559 CCAAGCACGAATGTTGATGACC 60.415 50.000 0.00 0.00 0.00 4.02
3685 3799 7.913789 TGGAAACTATGTTATACAGAAGGTGT 58.086 34.615 0.00 0.00 43.86 4.16
3724 3838 7.697710 TGCATCAGTATCGAACAAATTTGATTC 59.302 33.333 24.64 19.84 39.34 2.52
3892 4010 1.181786 AATGTATGGTTGCCGGGTTG 58.818 50.000 2.18 0.00 0.00 3.77
3934 4052 5.121298 GCTACAAACTAAACTTTCCCCTACG 59.879 44.000 0.00 0.00 0.00 3.51
3958 4076 6.019479 CGAAATCAGTTATGGACTAGCTGTTC 60.019 42.308 0.00 0.00 39.13 3.18
4246 4376 9.920946 ACCTATATCTGGTTTTAATGAATGTGT 57.079 29.630 0.00 0.00 33.34 3.72
4334 4464 3.120121 GTGATGATGAAAGCACGCAAAAC 59.880 43.478 0.00 0.00 30.93 2.43
4467 4604 4.261801 TGAGCAATTTCACTTAGGCCTAC 58.738 43.478 13.46 0.00 0.00 3.18
4488 4625 7.180408 GCCTACTATATTAAATCAGTGGGAGGA 59.820 40.741 15.73 0.00 40.93 3.71
4503 4640 2.666317 GGAGGAATGGGTTATGTTGGG 58.334 52.381 0.00 0.00 0.00 4.12
4520 4657 6.003859 TGTTGGGTTTCTTCTACCAAGTTA 57.996 37.500 0.00 0.00 43.08 2.24
4525 4662 4.695928 GGTTTCTTCTACCAAGTTAGCAGG 59.304 45.833 0.00 0.00 35.67 4.85
4526 4663 4.553330 TTCTTCTACCAAGTTAGCAGGG 57.447 45.455 0.00 0.00 0.00 4.45
4527 4664 3.517612 TCTTCTACCAAGTTAGCAGGGT 58.482 45.455 0.00 0.00 37.43 4.34
4528 4665 3.908103 TCTTCTACCAAGTTAGCAGGGTT 59.092 43.478 0.00 0.00 34.88 4.11
4529 4666 4.349930 TCTTCTACCAAGTTAGCAGGGTTT 59.650 41.667 0.00 0.00 34.88 3.27
4530 4667 4.717279 TCTACCAAGTTAGCAGGGTTTT 57.283 40.909 0.00 0.00 34.88 2.43
4531 4668 5.056553 TCTACCAAGTTAGCAGGGTTTTT 57.943 39.130 0.00 0.00 34.88 1.94
4562 4699 1.646189 TTTTTCGGTTGCAAGTTGGC 58.354 45.000 0.00 0.00 0.00 4.52
4563 4700 0.532573 TTTTCGGTTGCAAGTTGGCA 59.467 45.000 0.00 0.38 43.19 4.92
4564 4701 0.102120 TTTCGGTTGCAAGTTGGCAG 59.898 50.000 0.00 0.00 45.88 4.85
4565 4702 1.034838 TTCGGTTGCAAGTTGGCAGT 61.035 50.000 0.00 0.00 45.88 4.40
4566 4703 1.034838 TCGGTTGCAAGTTGGCAGTT 61.035 50.000 0.00 0.00 45.88 3.16
4567 4704 0.665835 CGGTTGCAAGTTGGCAGTTA 59.334 50.000 0.00 0.00 45.88 2.24
4568 4705 1.599419 CGGTTGCAAGTTGGCAGTTAC 60.599 52.381 0.00 0.00 45.88 2.50
4569 4706 1.681264 GGTTGCAAGTTGGCAGTTACT 59.319 47.619 0.00 0.00 45.88 2.24
4570 4707 2.287608 GGTTGCAAGTTGGCAGTTACTC 60.288 50.000 0.00 0.00 45.88 2.59
4571 4708 1.604604 TGCAAGTTGGCAGTTACTCC 58.395 50.000 4.75 0.00 39.25 3.85
4572 4709 1.133945 TGCAAGTTGGCAGTTACTCCA 60.134 47.619 4.75 0.58 39.25 3.86
4573 4710 1.266989 GCAAGTTGGCAGTTACTCCAC 59.733 52.381 4.75 1.38 30.97 4.02
4574 4711 2.571212 CAAGTTGGCAGTTACTCCACA 58.429 47.619 0.00 0.00 30.97 4.17
4575 4712 3.149196 CAAGTTGGCAGTTACTCCACAT 58.851 45.455 0.00 0.00 30.97 3.21
4576 4713 4.323417 CAAGTTGGCAGTTACTCCACATA 58.677 43.478 0.00 0.00 30.97 2.29
4577 4714 4.844349 AGTTGGCAGTTACTCCACATAT 57.156 40.909 3.65 0.00 30.97 1.78
4578 4715 5.179452 AGTTGGCAGTTACTCCACATATT 57.821 39.130 3.65 0.00 30.97 1.28
4579 4716 5.570320 AGTTGGCAGTTACTCCACATATTT 58.430 37.500 3.65 0.00 30.97 1.40
4580 4717 6.717289 AGTTGGCAGTTACTCCACATATTTA 58.283 36.000 3.65 0.00 30.97 1.40
4581 4718 6.823689 AGTTGGCAGTTACTCCACATATTTAG 59.176 38.462 3.65 0.00 30.97 1.85
4582 4719 5.680619 TGGCAGTTACTCCACATATTTAGG 58.319 41.667 0.58 0.00 0.00 2.69
4583 4720 5.427157 TGGCAGTTACTCCACATATTTAGGA 59.573 40.000 0.58 0.00 0.00 2.94
4584 4721 6.069905 TGGCAGTTACTCCACATATTTAGGAA 60.070 38.462 0.58 0.00 0.00 3.36
4585 4722 6.260271 GGCAGTTACTCCACATATTTAGGAAC 59.740 42.308 0.00 0.00 33.72 3.62
4586 4723 6.018994 GCAGTTACTCCACATATTTAGGAACG 60.019 42.308 0.00 0.00 37.76 3.95
4587 4724 6.479001 CAGTTACTCCACATATTTAGGAACGG 59.521 42.308 0.00 0.00 37.76 4.44
4588 4725 6.381994 AGTTACTCCACATATTTAGGAACGGA 59.618 38.462 0.00 0.00 37.76 4.69
4589 4726 5.277857 ACTCCACATATTTAGGAACGGAG 57.722 43.478 0.00 0.00 43.59 4.63
4590 4727 4.101119 ACTCCACATATTTAGGAACGGAGG 59.899 45.833 0.00 0.00 42.52 4.30
4591 4728 3.389983 TCCACATATTTAGGAACGGAGGG 59.610 47.826 0.00 0.00 0.00 4.30
4592 4729 3.389983 CCACATATTTAGGAACGGAGGGA 59.610 47.826 0.00 0.00 0.00 4.20
4593 4730 4.503296 CCACATATTTAGGAACGGAGGGAG 60.503 50.000 0.00 0.00 0.00 4.30
4627 4764 8.909671 CATGTAAATGCTCTTTCTCTTGTTTTC 58.090 33.333 0.00 0.00 0.00 2.29
4634 4771 8.627208 TGCTCTTTCTCTTGTTTTCATATCTT 57.373 30.769 0.00 0.00 0.00 2.40
4669 4806 1.665679 CTAACTACCGCATGTGCTTGG 59.334 52.381 0.00 0.61 39.32 3.61
4689 4826 6.856426 GCTTGGTACTGTTTTGTTCATACTTC 59.144 38.462 0.00 0.00 0.00 3.01
4704 4841 0.473886 ACTTCCTGCCCAGTACCACT 60.474 55.000 0.00 0.00 0.00 4.00
4724 4861 6.094325 ACCACTAAGTGTTTTGATTTGTTCGA 59.906 34.615 0.00 0.00 0.00 3.71
4752 4891 9.566530 GTGATCTATCATGCCGATATATGATAC 57.433 37.037 0.00 0.00 42.37 2.24
4753 4892 9.525826 TGATCTATCATGCCGATATATGATACT 57.474 33.333 0.00 0.00 42.37 2.12
4755 4894 8.341892 TCTATCATGCCGATATATGATACTCC 57.658 38.462 0.00 0.00 42.37 3.85
4756 4895 5.791336 TCATGCCGATATATGATACTCCC 57.209 43.478 0.00 0.00 0.00 4.30
4757 4896 5.458595 TCATGCCGATATATGATACTCCCT 58.541 41.667 0.00 0.00 0.00 4.20
4758 4897 5.536538 TCATGCCGATATATGATACTCCCTC 59.463 44.000 0.00 0.00 0.00 4.30
4759 4898 5.130705 TGCCGATATATGATACTCCCTCT 57.869 43.478 0.00 0.00 0.00 3.69
4760 4899 4.889995 TGCCGATATATGATACTCCCTCTG 59.110 45.833 0.00 0.00 0.00 3.35
4761 4900 4.890581 GCCGATATATGATACTCCCTCTGT 59.109 45.833 0.00 0.00 0.00 3.41
4762 4901 5.009210 GCCGATATATGATACTCCCTCTGTC 59.991 48.000 0.00 0.00 0.00 3.51
4763 4902 5.533154 CCGATATATGATACTCCCTCTGTCC 59.467 48.000 0.00 0.00 0.00 4.02
4764 4903 5.533154 CGATATATGATACTCCCTCTGTCCC 59.467 48.000 0.00 0.00 0.00 4.46
4765 4904 4.767000 ATATGATACTCCCTCTGTCCCA 57.233 45.455 0.00 0.00 0.00 4.37
4766 4905 3.645053 ATGATACTCCCTCTGTCCCAT 57.355 47.619 0.00 0.00 0.00 4.00
4767 4906 4.767000 ATGATACTCCCTCTGTCCCATA 57.233 45.455 0.00 0.00 0.00 2.74
4768 4907 4.767000 TGATACTCCCTCTGTCCCATAT 57.233 45.455 0.00 0.00 0.00 1.78
4769 4908 5.093236 TGATACTCCCTCTGTCCCATATT 57.907 43.478 0.00 0.00 0.00 1.28
4770 4909 4.840680 TGATACTCCCTCTGTCCCATATTG 59.159 45.833 0.00 0.00 0.00 1.90
4771 4910 2.412591 ACTCCCTCTGTCCCATATTGG 58.587 52.381 0.00 0.00 37.25 3.16
4772 4911 2.293856 ACTCCCTCTGTCCCATATTGGT 60.294 50.000 0.00 0.00 35.17 3.67
4773 4912 2.780010 CTCCCTCTGTCCCATATTGGTT 59.220 50.000 0.00 0.00 35.17 3.67
4774 4913 2.509548 TCCCTCTGTCCCATATTGGTTG 59.490 50.000 0.00 0.00 35.17 3.77
4775 4914 2.242196 CCCTCTGTCCCATATTGGTTGT 59.758 50.000 0.00 0.00 35.17 3.32
4776 4915 3.545703 CCTCTGTCCCATATTGGTTGTC 58.454 50.000 0.00 0.00 35.17 3.18
4777 4916 3.200825 CCTCTGTCCCATATTGGTTGTCT 59.799 47.826 0.00 0.00 35.17 3.41
4778 4917 4.446371 CTCTGTCCCATATTGGTTGTCTC 58.554 47.826 0.00 0.00 35.17 3.36
4779 4918 4.104086 TCTGTCCCATATTGGTTGTCTCT 58.896 43.478 0.00 0.00 35.17 3.10
4780 4919 4.162320 TCTGTCCCATATTGGTTGTCTCTC 59.838 45.833 0.00 0.00 35.17 3.20
4781 4920 3.843619 TGTCCCATATTGGTTGTCTCTCA 59.156 43.478 0.00 0.00 35.17 3.27
4782 4921 4.288366 TGTCCCATATTGGTTGTCTCTCAA 59.712 41.667 0.00 0.00 35.17 3.02
4783 4922 5.222027 TGTCCCATATTGGTTGTCTCTCAAA 60.222 40.000 0.00 0.00 37.81 2.69
4784 4923 5.123979 GTCCCATATTGGTTGTCTCTCAAAC 59.876 44.000 0.00 0.00 43.43 2.93
4785 4924 4.094887 CCCATATTGGTTGTCTCTCAAACG 59.905 45.833 0.00 0.00 45.84 3.60
4786 4925 4.094887 CCATATTGGTTGTCTCTCAAACGG 59.905 45.833 0.00 0.00 45.84 4.44
4787 4926 2.992124 TTGGTTGTCTCTCAAACGGA 57.008 45.000 0.00 0.00 45.84 4.69
4788 4927 3.485463 TTGGTTGTCTCTCAAACGGAT 57.515 42.857 0.00 0.00 45.84 4.18
4789 4928 2.766313 TGGTTGTCTCTCAAACGGATG 58.234 47.619 0.00 0.00 45.84 3.51
4790 4929 2.104111 TGGTTGTCTCTCAAACGGATGT 59.896 45.455 0.00 0.00 45.84 3.06
4791 4930 3.322541 TGGTTGTCTCTCAAACGGATGTA 59.677 43.478 0.00 0.00 45.84 2.29
4792 4931 4.020573 TGGTTGTCTCTCAAACGGATGTAT 60.021 41.667 0.00 0.00 45.84 2.29
4793 4932 4.567159 GGTTGTCTCTCAAACGGATGTATC 59.433 45.833 0.00 0.00 37.81 2.24
4794 4933 5.411781 GTTGTCTCTCAAACGGATGTATCT 58.588 41.667 0.00 0.00 37.81 1.98
4795 4934 6.405508 GGTTGTCTCTCAAACGGATGTATCTA 60.406 42.308 0.00 0.00 37.81 1.98
4796 4935 6.378710 TGTCTCTCAAACGGATGTATCTAG 57.621 41.667 0.00 0.00 0.00 2.43
4797 4936 5.216648 GTCTCTCAAACGGATGTATCTAGC 58.783 45.833 0.00 0.00 0.00 3.42
4798 4937 4.887655 TCTCTCAAACGGATGTATCTAGCA 59.112 41.667 0.00 0.00 0.00 3.49
4799 4938 4.933330 TCTCAAACGGATGTATCTAGCAC 58.067 43.478 0.00 0.00 0.00 4.40
4800 4939 4.645136 TCTCAAACGGATGTATCTAGCACT 59.355 41.667 0.00 0.00 0.00 4.40
4801 4940 5.127194 TCTCAAACGGATGTATCTAGCACTT 59.873 40.000 0.00 0.00 0.00 3.16
4802 4941 6.320418 TCTCAAACGGATGTATCTAGCACTTA 59.680 38.462 0.00 0.00 0.00 2.24
4803 4942 6.869695 TCAAACGGATGTATCTAGCACTTAA 58.130 36.000 0.00 0.00 0.00 1.85
4804 4943 7.324935 TCAAACGGATGTATCTAGCACTTAAA 58.675 34.615 0.00 0.00 0.00 1.52
4805 4944 7.985184 TCAAACGGATGTATCTAGCACTTAAAT 59.015 33.333 0.00 0.00 0.00 1.40
4806 4945 9.256477 CAAACGGATGTATCTAGCACTTAAATA 57.744 33.333 0.00 0.00 0.00 1.40
4807 4946 9.477484 AAACGGATGTATCTAGCACTTAAATAG 57.523 33.333 0.00 0.00 0.00 1.73
4808 4947 7.603651 ACGGATGTATCTAGCACTTAAATAGG 58.396 38.462 0.00 0.00 0.00 2.57
4809 4948 7.232941 ACGGATGTATCTAGCACTTAAATAGGT 59.767 37.037 0.00 0.00 0.00 3.08
4810 4949 7.542477 CGGATGTATCTAGCACTTAAATAGGTG 59.458 40.741 0.00 0.00 36.49 4.00
4811 4950 8.368668 GGATGTATCTAGCACTTAAATAGGTGT 58.631 37.037 4.86 0.00 35.90 4.16
4814 4953 9.636789 TGTATCTAGCACTTAAATAGGTGTAGA 57.363 33.333 12.59 12.59 35.90 2.59
4818 4957 9.636789 TCTAGCACTTAAATAGGTGTAGATACA 57.363 33.333 4.86 0.00 35.90 2.29
4821 4960 8.368668 AGCACTTAAATAGGTGTAGATACATCC 58.631 37.037 0.00 2.44 38.05 3.51
4822 4961 8.148351 GCACTTAAATAGGTGTAGATACATCCA 58.852 37.037 0.00 0.00 38.05 3.41
4828 4967 8.974292 AATAGGTGTAGATACATCCATTACCT 57.026 34.615 0.00 0.00 38.05 3.08
4830 4969 9.702253 ATAGGTGTAGATACATCCATTACCTAG 57.298 37.037 0.00 0.00 38.05 3.02
4831 4970 7.536625 AGGTGTAGATACATCCATTACCTAGT 58.463 38.462 0.00 0.00 38.05 2.57
4832 4971 8.676020 AGGTGTAGATACATCCATTACCTAGTA 58.324 37.037 0.00 0.00 38.05 1.82
4833 4972 9.476928 GGTGTAGATACATCCATTACCTAGTAT 57.523 37.037 0.00 0.00 38.63 2.12
4835 4974 9.475620 TGTAGATACATCCATTACCTAGTATGG 57.524 37.037 8.69 8.69 35.58 2.74
4836 4975 7.979786 AGATACATCCATTACCTAGTATGGG 57.020 40.000 13.02 4.30 45.72 4.00
4837 4976 7.719424 AGATACATCCATTACCTAGTATGGGA 58.281 38.462 13.02 3.72 40.53 4.37
4838 4977 7.841729 AGATACATCCATTACCTAGTATGGGAG 59.158 40.741 13.02 9.59 40.53 4.30
4839 4978 5.094387 ACATCCATTACCTAGTATGGGAGG 58.906 45.833 13.02 6.80 40.53 4.30
4840 4979 4.141990 TCCATTACCTAGTATGGGAGGG 57.858 50.000 13.02 0.00 40.53 4.30
4841 4980 3.735984 TCCATTACCTAGTATGGGAGGGA 59.264 47.826 13.02 0.00 40.53 4.20
4842 4981 4.363217 TCCATTACCTAGTATGGGAGGGAT 59.637 45.833 13.02 0.00 40.53 3.85
4843 4982 4.471386 CCATTACCTAGTATGGGAGGGATG 59.529 50.000 7.54 0.00 40.53 3.51
4844 4983 2.723530 ACCTAGTATGGGAGGGATGG 57.276 55.000 0.00 0.00 40.53 3.51
4845 4984 2.161624 ACCTAGTATGGGAGGGATGGA 58.838 52.381 0.00 0.00 40.53 3.41
4846 4985 2.112691 ACCTAGTATGGGAGGGATGGAG 59.887 54.545 0.00 0.00 40.53 3.86
4847 4986 2.112691 CCTAGTATGGGAGGGATGGAGT 59.887 54.545 0.00 0.00 40.53 3.85
4848 4987 3.336997 CCTAGTATGGGAGGGATGGAGTA 59.663 52.174 0.00 0.00 40.53 2.59
4860 4999 7.235812 GGGAGGGATGGAGTATTATATATGGAC 59.764 44.444 0.00 0.00 0.00 4.02
4903 5070 3.508762 ACGGCTTTCTCGTATTACTGTG 58.491 45.455 0.00 0.00 39.22 3.66
4913 5080 5.757320 TCTCGTATTACTGTGTAGACTAGCC 59.243 44.000 0.00 0.00 0.00 3.93
4931 5098 6.407202 ACTAGCCATTACCTAGTTGAAAGTG 58.593 40.000 0.00 0.00 41.97 3.16
4947 5114 6.367374 TGAAAGTGTCATGTATCCCACTTA 57.633 37.500 13.52 2.85 44.88 2.24
4948 5115 6.957631 TGAAAGTGTCATGTATCCCACTTAT 58.042 36.000 13.52 7.75 44.88 1.73
4955 5123 7.985184 GTGTCATGTATCCCACTTATACAAAGA 59.015 37.037 0.00 0.00 41.72 2.52
4964 5132 5.402398 CCACTTATACAAAGAGCTTTTGGC 58.598 41.667 18.96 0.00 42.19 4.52
5069 5237 5.397326 GTGAAGATGAGCCAACAGAAATTC 58.603 41.667 0.00 0.00 0.00 2.17
5126 5294 0.825425 CTCCTGAGGAGCGCCAGATA 60.825 60.000 16.73 0.83 43.29 1.98
5195 5363 2.685897 GGTGTGTTTTCAACCAGCTGTA 59.314 45.455 13.81 0.00 33.97 2.74
5301 5476 3.065233 CGTGCTATGGCTGCTGAATTTTA 59.935 43.478 1.68 0.00 39.59 1.52
5304 5479 4.096833 TGCTATGGCTGCTGAATTTTAGTG 59.903 41.667 1.68 0.00 39.59 2.74
5307 5482 5.824904 ATGGCTGCTGAATTTTAGTGTAG 57.175 39.130 0.00 0.00 0.00 2.74
5313 5488 8.889717 GGCTGCTGAATTTTAGTGTAGTTATTA 58.110 33.333 0.00 0.00 0.00 0.98
5375 5551 3.191162 TGAAGTTGTTCAGCATGCCATAC 59.809 43.478 15.66 10.28 37.79 2.39
5531 5712 5.534207 TGATGAAAGACCAGTTTGCAAAT 57.466 34.783 16.21 0.00 0.00 2.32
5618 5799 1.227853 GGTCCACCTGAACGCACTT 60.228 57.895 0.00 0.00 0.00 3.16
5718 6602 4.290942 CCCCTCTTAGTCATCCTTACTGT 58.709 47.826 0.00 0.00 0.00 3.55
5719 6603 4.100189 CCCCTCTTAGTCATCCTTACTGTG 59.900 50.000 0.00 0.00 0.00 3.66
5744 6628 9.014297 TGATTCATCCTTCTTCCTTTTTAAGAC 57.986 33.333 0.00 0.00 32.81 3.01
5752 6636 2.563702 TCCTTTTTAAGACGCGTGGTT 58.436 42.857 20.70 13.02 0.00 3.67
5761 6653 0.928451 GACGCGTGGTTGTTTGCTTC 60.928 55.000 20.70 0.00 0.00 3.86
6105 7216 7.925043 TCCCTCTTCGAGTAAGATACATATC 57.075 40.000 0.00 0.00 43.32 1.63
6283 7395 7.064609 TCCTATTTTACTGATGTTTCGCAGAAG 59.935 37.037 0.00 0.00 45.90 2.85
6358 7579 4.851010 TGTCTATGAAATGAATGCATGCG 58.149 39.130 14.09 0.00 34.26 4.73
6410 8180 5.008514 TGTTTTGTCATGTGTGGTAGATGTG 59.991 40.000 0.00 0.00 32.20 3.21
6479 8255 2.999507 TTCAAGCTGTCTCTCGACTC 57.000 50.000 0.00 0.00 40.86 3.36
6570 8351 8.593679 TGACTTCTATTCTTAGTTCCATCACAA 58.406 33.333 0.00 0.00 0.00 3.33
6589 8373 4.091365 CACAAGAACATTTGCATGCTCATG 59.909 41.667 20.33 20.98 41.60 3.07
6659 8444 2.100749 GGCTTGGCAACTGTTAACAACT 59.899 45.455 10.03 0.00 37.61 3.16
6662 8447 4.036380 GCTTGGCAACTGTTAACAACTACT 59.964 41.667 10.03 0.00 37.61 2.57
6663 8448 5.744666 TTGGCAACTGTTAACAACTACTC 57.255 39.130 10.03 0.00 37.61 2.59
6664 8449 5.031066 TGGCAACTGTTAACAACTACTCT 57.969 39.130 10.03 0.00 37.61 3.24
6665 8450 5.054477 TGGCAACTGTTAACAACTACTCTC 58.946 41.667 10.03 0.00 37.61 3.20
6666 8451 5.163343 TGGCAACTGTTAACAACTACTCTCT 60.163 40.000 10.03 0.00 37.61 3.10
6668 8453 5.405873 GCAACTGTTAACAACTACTCTCTCC 59.594 44.000 10.03 0.00 0.00 3.71
6670 8455 4.826183 ACTGTTAACAACTACTCTCTCCGT 59.174 41.667 10.03 0.00 0.00 4.69
6671 8456 5.301298 ACTGTTAACAACTACTCTCTCCGTT 59.699 40.000 10.03 0.00 0.00 4.44
6672 8457 5.766222 TGTTAACAACTACTCTCTCCGTTC 58.234 41.667 5.64 0.00 0.00 3.95
6674 8459 3.157750 ACAACTACTCTCTCCGTTCCT 57.842 47.619 0.00 0.00 0.00 3.36
6675 8460 4.298103 ACAACTACTCTCTCCGTTCCTA 57.702 45.455 0.00 0.00 0.00 2.94
6678 8463 5.715753 ACAACTACTCTCTCCGTTCCTAAAT 59.284 40.000 0.00 0.00 0.00 1.40
6679 8464 6.888632 ACAACTACTCTCTCCGTTCCTAAATA 59.111 38.462 0.00 0.00 0.00 1.40
6680 8465 7.560626 ACAACTACTCTCTCCGTTCCTAAATAT 59.439 37.037 0.00 0.00 0.00 1.28
6681 8466 8.414778 CAACTACTCTCTCCGTTCCTAAATATT 58.585 37.037 0.00 0.00 0.00 1.28
6682 8467 8.536340 ACTACTCTCTCCGTTCCTAAATATTT 57.464 34.615 5.89 5.89 0.00 1.40
6683 8468 8.414778 ACTACTCTCTCCGTTCCTAAATATTTG 58.585 37.037 11.05 1.40 0.00 2.32
6684 8469 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
6686 8471 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
6687 8472 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
6688 8473 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
6689 8474 8.857694 TCTCCGTTCCTAAATATTTGTCTTTT 57.142 30.769 11.05 0.00 0.00 2.27
6690 8475 9.292195 TCTCCGTTCCTAAATATTTGTCTTTTT 57.708 29.630 11.05 0.00 0.00 1.94
6747 8532 9.929180 GTATATAGACATATTTTGGAGTGCAGA 57.071 33.333 0.00 0.00 0.00 4.26
6750 8535 6.690194 AGACATATTTTGGAGTGCAGATTC 57.310 37.500 0.00 0.00 0.00 2.52
6751 8536 6.182627 AGACATATTTTGGAGTGCAGATTCA 58.817 36.000 0.00 0.00 0.00 2.57
6761 8546 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
6763 8548 4.280174 AGTGCAGATTCACTCATTTTGCTT 59.720 37.500 0.00 0.00 43.28 3.91
6764 8549 4.986659 GTGCAGATTCACTCATTTTGCTTT 59.013 37.500 0.00 0.00 34.29 3.51
6765 8550 4.986034 TGCAGATTCACTCATTTTGCTTTG 59.014 37.500 0.00 0.00 0.00 2.77
6766 8551 4.986659 GCAGATTCACTCATTTTGCTTTGT 59.013 37.500 0.00 0.00 0.00 2.83
6767 8552 6.151691 GCAGATTCACTCATTTTGCTTTGTA 58.848 36.000 0.00 0.00 0.00 2.41
6768 8553 6.810182 GCAGATTCACTCATTTTGCTTTGTAT 59.190 34.615 0.00 0.00 0.00 2.29
6769 8554 7.201410 GCAGATTCACTCATTTTGCTTTGTATG 60.201 37.037 0.00 0.00 0.00 2.39
6770 8555 7.811236 CAGATTCACTCATTTTGCTTTGTATGT 59.189 33.333 0.00 0.00 0.00 2.29
6771 8556 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
6772 8557 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
6773 8558 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
6774 8559 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
6775 8560 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
6777 8562 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
6778 8563 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
6780 8565 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
6781 8566 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
6782 8567 6.935741 TGCTTTGTATGTAGTCACTTGTTT 57.064 33.333 0.00 0.00 0.00 2.83
6784 8569 8.615878 TGCTTTGTATGTAGTCACTTGTTTAT 57.384 30.769 0.00 0.00 0.00 1.40
6785 8570 9.062524 TGCTTTGTATGTAGTCACTTGTTTATT 57.937 29.630 0.00 0.00 0.00 1.40
6786 8571 9.893305 GCTTTGTATGTAGTCACTTGTTTATTT 57.107 29.630 0.00 0.00 0.00 1.40
6793 8578 8.829514 TGTAGTCACTTGTTTATTTTGAAACG 57.170 30.769 0.00 0.00 41.36 3.60
6794 8579 7.911205 TGTAGTCACTTGTTTATTTTGAAACGG 59.089 33.333 0.00 0.00 41.36 4.44
6795 8580 7.090953 AGTCACTTGTTTATTTTGAAACGGA 57.909 32.000 0.00 0.00 41.36 4.69
6796 8581 7.193595 AGTCACTTGTTTATTTTGAAACGGAG 58.806 34.615 0.00 0.00 41.36 4.63
6797 8582 6.416750 GTCACTTGTTTATTTTGAAACGGAGG 59.583 38.462 0.00 0.00 41.36 4.30
6800 8585 7.167468 CACTTGTTTATTTTGAAACGGAGGAAG 59.833 37.037 0.00 0.00 41.36 3.46
6807 8592 5.750352 TTTGAAACGGAGGAAGTATACCT 57.250 39.130 0.00 0.00 40.80 3.08
6809 8594 6.855763 TTGAAACGGAGGAAGTATACCTAA 57.144 37.500 0.00 0.00 37.93 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
500 505 5.595952 GGAAGAATAATCATCCAAGCAGGTT 59.404 40.000 0.00 0.00 41.96 3.50
513 518 2.438392 ACAGACCCCGGGAAGAATAATC 59.562 50.000 26.32 5.98 0.00 1.75
528 533 3.817647 AGCAAGAGAAACATCAACAGACC 59.182 43.478 0.00 0.00 0.00 3.85
581 586 3.403277 CCATCGAAGCAGCGAAGG 58.597 61.111 7.85 7.85 44.22 3.46
582 587 0.459237 ACTCCATCGAAGCAGCGAAG 60.459 55.000 5.04 1.17 44.22 3.79
696 703 0.762842 AGCAAAAAGGGACCCCAACC 60.763 55.000 7.00 0.00 38.92 3.77
705 712 0.740737 CCGGATAGCAGCAAAAAGGG 59.259 55.000 0.00 0.00 0.00 3.95
709 716 1.834896 TCTACCCGGATAGCAGCAAAA 59.165 47.619 0.73 0.00 0.00 2.44
737 746 3.858503 GCTGAATTCCAAGCTGGTTTCAC 60.859 47.826 9.86 9.99 39.03 3.18
738 747 2.297033 GCTGAATTCCAAGCTGGTTTCA 59.703 45.455 9.86 15.22 39.03 2.69
743 752 1.660560 CGGGCTGAATTCCAAGCTGG 61.661 60.000 15.19 6.14 39.43 4.85
759 768 1.227380 CAAGCGAGAGGGAATCGGG 60.227 63.158 0.00 0.00 40.50 5.14
770 779 3.065371 AGAAGAAACCAAACACAAGCGAG 59.935 43.478 0.00 0.00 0.00 5.03
791 800 2.322638 GAAGCAGAGCCAGGGCCTAG 62.323 65.000 5.28 0.00 43.17 3.02
792 801 2.285668 AAGCAGAGCCAGGGCCTA 60.286 61.111 5.28 0.00 43.17 3.93
793 802 3.726144 GAAGCAGAGCCAGGGCCT 61.726 66.667 0.00 0.00 43.17 5.19
841 852 3.587403 AAAGACAAACGCGAAGAACTC 57.413 42.857 15.93 0.00 0.00 3.01
850 861 3.252458 ACACCCAGATTAAAGACAAACGC 59.748 43.478 0.00 0.00 0.00 4.84
851 862 4.513692 TCACACCCAGATTAAAGACAAACG 59.486 41.667 0.00 0.00 0.00 3.60
852 863 6.385649 TTCACACCCAGATTAAAGACAAAC 57.614 37.500 0.00 0.00 0.00 2.93
853 864 7.595819 ATTTCACACCCAGATTAAAGACAAA 57.404 32.000 0.00 0.00 0.00 2.83
854 865 7.521423 CGAATTTCACACCCAGATTAAAGACAA 60.521 37.037 0.00 0.00 0.00 3.18
855 866 6.072728 CGAATTTCACACCCAGATTAAAGACA 60.073 38.462 0.00 0.00 0.00 3.41
856 867 6.314784 CGAATTTCACACCCAGATTAAAGAC 58.685 40.000 0.00 0.00 0.00 3.01
911 939 0.817634 CCCACACGAAGCCTGAAACA 60.818 55.000 0.00 0.00 0.00 2.83
936 964 1.077858 CTTCCTCCTGCTCTTGGCC 60.078 63.158 0.00 0.00 40.92 5.36
938 966 0.987294 TTCCTTCCTCCTGCTCTTGG 59.013 55.000 0.00 0.00 0.00 3.61
940 968 2.039613 CTGTTTCCTTCCTCCTGCTCTT 59.960 50.000 0.00 0.00 0.00 2.85
941 969 1.627834 CTGTTTCCTTCCTCCTGCTCT 59.372 52.381 0.00 0.00 0.00 4.09
942 970 1.625818 TCTGTTTCCTTCCTCCTGCTC 59.374 52.381 0.00 0.00 0.00 4.26
944 972 1.948144 GCTCTGTTTCCTTCCTCCTGC 60.948 57.143 0.00 0.00 0.00 4.85
945 973 1.339535 GGCTCTGTTTCCTTCCTCCTG 60.340 57.143 0.00 0.00 0.00 3.86
946 974 0.988063 GGCTCTGTTTCCTTCCTCCT 59.012 55.000 0.00 0.00 0.00 3.69
947 975 0.391793 CGGCTCTGTTTCCTTCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
948 976 0.391793 CCGGCTCTGTTTCCTTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
1101 1135 1.144716 CATGCTAAGCTCCTCGGCA 59.855 57.895 0.00 0.00 37.32 5.69
1113 1147 2.106131 CCGCTGCGGTACATGCTA 59.894 61.111 31.72 0.00 42.73 3.49
1230 1264 4.193334 TCGGAGAGCATGTCGGCG 62.193 66.667 0.00 0.00 39.27 6.46
1360 1394 4.785453 GGAGGCAGCCTGGAACCG 62.785 72.222 22.26 0.00 31.76 4.44
1417 1451 4.219999 GAGAGAGCTCCCGCCAGC 62.220 72.222 10.93 0.00 39.99 4.85
1434 1468 2.435586 CCTGGCTGCACCGAGAAG 60.436 66.667 0.50 0.00 43.94 2.85
1485 1519 2.374504 ACCTCTGCCCATCCTATCATTG 59.625 50.000 0.00 0.00 0.00 2.82
1548 1582 3.515286 CCATCAGCTGCTTGGCCG 61.515 66.667 18.82 0.00 0.00 6.13
1551 1585 0.394762 TAAGCCCATCAGCTGCTTGG 60.395 55.000 22.11 22.11 44.11 3.61
1576 1610 2.286872 GAGGCCATTGACATCAGACAG 58.713 52.381 5.01 0.00 0.00 3.51
1638 1672 7.902917 CACAGCAAATGCAATGAGAAAATATTG 59.097 33.333 8.28 0.00 45.16 1.90
1649 1683 4.561213 CACACTATCACAGCAAATGCAATG 59.439 41.667 8.28 5.46 45.16 2.82
1667 1701 9.606631 GAAGGTTAAAGAATCTATGATCACACT 57.393 33.333 0.00 0.00 0.00 3.55
1668 1702 9.606631 AGAAGGTTAAAGAATCTATGATCACAC 57.393 33.333 0.00 0.00 0.00 3.82
1669 1703 9.605275 CAGAAGGTTAAAGAATCTATGATCACA 57.395 33.333 0.00 0.00 0.00 3.58
1670 1704 9.606631 ACAGAAGGTTAAAGAATCTATGATCAC 57.393 33.333 0.00 0.00 0.00 3.06
1877 1914 5.820926 GCTATTAGAGCGTGAAAGATGAG 57.179 43.478 0.00 0.00 42.62 2.90
1957 1994 1.706287 GAGCGTGAAAGATTCGGGCC 61.706 60.000 0.00 0.00 32.81 5.80
2028 2065 3.665745 TTTGGGCTCTCAAAAGCATTC 57.334 42.857 0.00 0.00 44.35 2.67
2051 2088 3.066064 CGATGACTCAGAGGACCTTACTG 59.934 52.174 1.53 0.00 0.00 2.74
2085 2122 6.398234 TTCATAGATTCTGACCTACTCTGC 57.602 41.667 0.00 0.00 0.00 4.26
2125 2162 1.371183 CAAGACTGGGTGAAGCCGA 59.629 57.895 0.00 0.00 38.44 5.54
2151 2188 5.625311 CGACATTGAAGAACCTAAACTTTGC 59.375 40.000 0.00 0.00 0.00 3.68
2475 2512 6.736794 GCCTATGCTCCTTTGGAACATTATTG 60.737 42.308 7.65 0.00 39.05 1.90
2499 2536 8.296713 TGAACTAAATTATGTGGAGAAAACTGC 58.703 33.333 0.00 0.00 0.00 4.40
2556 2593 5.716228 ACCATTTGGAAAGACTGCATATTCA 59.284 36.000 3.01 0.00 38.94 2.57
2600 2637 6.649155 TCAGCTGCCAGTTTACTCATATTTA 58.351 36.000 9.47 0.00 0.00 1.40
2730 2767 4.504461 GGTACATCAGTGTTTGAGCTATCG 59.496 45.833 0.00 0.00 39.68 2.92
2744 2781 2.814269 CATGTCGTCCAGGTACATCAG 58.186 52.381 0.00 0.00 31.60 2.90
2833 2870 4.044065 ACAGAGAGAGAAAGAGAGAGGGAA 59.956 45.833 0.00 0.00 0.00 3.97
2845 2882 3.067320 CACACACACAGACAGAGAGAGAA 59.933 47.826 0.00 0.00 0.00 2.87
2855 2892 1.014352 GGGAACACACACACACAGAC 58.986 55.000 0.00 0.00 0.00 3.51
2898 2983 2.309613 GCATATTCACCATCTGGGCAA 58.690 47.619 0.54 0.00 42.05 4.52
2901 2986 2.624838 GTTGGCATATTCACCATCTGGG 59.375 50.000 0.54 0.00 44.81 4.45
2933 3018 2.307686 TGATAACCAGTCCCCCTTTGAC 59.692 50.000 0.00 0.00 0.00 3.18
3225 3316 1.476891 TGGCTAGATGTCGGACTTGAC 59.523 52.381 9.88 0.00 39.37 3.18
3234 3325 6.479884 AGATGGGATAAAATGGCTAGATGTC 58.520 40.000 0.00 0.00 0.00 3.06
3340 3439 3.843027 AGACCATTCTCTGAACTCCATGT 59.157 43.478 0.00 0.00 0.00 3.21
3494 3593 6.065374 AGTATCCCACATAAACACAACAACA 58.935 36.000 0.00 0.00 0.00 3.33
3550 3655 2.460918 CTGTATAAAGCGACTCCCGTG 58.539 52.381 0.00 0.00 41.15 4.94
3892 4010 7.843490 TTGTAGCAATACATACCTTCTGAAC 57.157 36.000 0.00 0.00 0.00 3.18
3934 4052 6.818644 TGAACAGCTAGTCCATAACTGATTTC 59.181 38.462 0.00 0.00 39.11 2.17
3958 4076 8.511604 AAAAATATGATGTCCCTAAGACTGTG 57.488 34.615 0.00 0.00 46.46 3.66
4334 4464 0.683412 TGATCTCCTCCATCATGGCG 59.317 55.000 0.00 0.00 37.47 5.69
4443 4579 4.347607 AGGCCTAAGTGAAATTGCTCAAT 58.652 39.130 1.29 0.00 0.00 2.57
4467 4604 7.831193 CCCATTCCTCCCACTGATTTAATATAG 59.169 40.741 0.00 0.00 0.00 1.31
4478 4615 2.242196 ACATAACCCATTCCTCCCACTG 59.758 50.000 0.00 0.00 0.00 3.66
4488 4625 5.402630 AGAAGAAACCCAACATAACCCATT 58.597 37.500 0.00 0.00 0.00 3.16
4503 4640 4.695928 CCCTGCTAACTTGGTAGAAGAAAC 59.304 45.833 2.33 0.00 29.01 2.78
4543 4680 1.066858 TGCCAACTTGCAACCGAAAAA 60.067 42.857 0.00 0.00 38.56 1.94
4544 4681 0.532573 TGCCAACTTGCAACCGAAAA 59.467 45.000 0.00 0.00 38.56 2.29
4545 4682 0.102120 CTGCCAACTTGCAACCGAAA 59.898 50.000 0.00 0.00 41.51 3.46
4546 4683 1.034838 ACTGCCAACTTGCAACCGAA 61.035 50.000 0.00 0.00 41.51 4.30
4547 4684 1.034838 AACTGCCAACTTGCAACCGA 61.035 50.000 0.00 0.00 41.51 4.69
4548 4685 0.665835 TAACTGCCAACTTGCAACCG 59.334 50.000 0.00 0.00 41.51 4.44
4549 4686 1.681264 AGTAACTGCCAACTTGCAACC 59.319 47.619 0.00 0.00 41.51 3.77
4550 4687 2.287608 GGAGTAACTGCCAACTTGCAAC 60.288 50.000 0.00 0.00 41.51 4.17
4551 4688 1.953686 GGAGTAACTGCCAACTTGCAA 59.046 47.619 0.00 0.00 41.51 4.08
4552 4689 1.133945 TGGAGTAACTGCCAACTTGCA 60.134 47.619 0.00 0.00 39.37 4.08
4553 4690 1.266989 GTGGAGTAACTGCCAACTTGC 59.733 52.381 0.00 0.00 35.63 4.01
4554 4691 2.571212 TGTGGAGTAACTGCCAACTTG 58.429 47.619 0.00 0.00 35.63 3.16
4555 4692 3.508845 ATGTGGAGTAACTGCCAACTT 57.491 42.857 0.00 0.00 35.63 2.66
4556 4693 4.844349 ATATGTGGAGTAACTGCCAACT 57.156 40.909 0.00 0.00 35.63 3.16
4557 4694 5.897377 AAATATGTGGAGTAACTGCCAAC 57.103 39.130 0.00 0.00 35.63 3.77
4558 4695 6.069905 TCCTAAATATGTGGAGTAACTGCCAA 60.070 38.462 0.00 0.00 35.63 4.52
4559 4696 5.427157 TCCTAAATATGTGGAGTAACTGCCA 59.573 40.000 0.00 0.00 0.00 4.92
4560 4697 5.925509 TCCTAAATATGTGGAGTAACTGCC 58.074 41.667 0.00 0.00 0.00 4.85
4561 4698 6.018994 CGTTCCTAAATATGTGGAGTAACTGC 60.019 42.308 0.00 0.00 0.00 4.40
4562 4699 6.479001 CCGTTCCTAAATATGTGGAGTAACTG 59.521 42.308 0.00 0.00 0.00 3.16
4563 4700 6.381994 TCCGTTCCTAAATATGTGGAGTAACT 59.618 38.462 0.00 0.00 0.00 2.24
4564 4701 6.576185 TCCGTTCCTAAATATGTGGAGTAAC 58.424 40.000 0.00 0.00 0.00 2.50
4565 4702 6.183360 CCTCCGTTCCTAAATATGTGGAGTAA 60.183 42.308 4.44 0.00 40.06 2.24
4566 4703 5.303589 CCTCCGTTCCTAAATATGTGGAGTA 59.696 44.000 4.44 0.00 40.06 2.59
4567 4704 4.101119 CCTCCGTTCCTAAATATGTGGAGT 59.899 45.833 4.44 0.00 40.06 3.85
4568 4705 4.503296 CCCTCCGTTCCTAAATATGTGGAG 60.503 50.000 0.00 0.00 41.08 3.86
4569 4706 3.389983 CCCTCCGTTCCTAAATATGTGGA 59.610 47.826 0.00 0.00 0.00 4.02
4570 4707 3.389983 TCCCTCCGTTCCTAAATATGTGG 59.610 47.826 0.00 0.00 0.00 4.17
4571 4708 4.101119 ACTCCCTCCGTTCCTAAATATGTG 59.899 45.833 0.00 0.00 0.00 3.21
4572 4709 4.296056 ACTCCCTCCGTTCCTAAATATGT 58.704 43.478 0.00 0.00 0.00 2.29
4573 4710 4.957684 ACTCCCTCCGTTCCTAAATATG 57.042 45.455 0.00 0.00 0.00 1.78
4574 4711 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4575 4712 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4576 4713 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4577 4714 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4578 4715 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4579 4716 4.105217 TGATATGTACTCCCTCCGTTCCTA 59.895 45.833 0.00 0.00 0.00 2.94
4580 4717 3.117246 TGATATGTACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
4581 4718 3.228453 TGATATGTACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
4582 4719 4.281182 ACATGATATGTACTCCCTCCGTTC 59.719 45.833 0.00 0.00 42.78 3.95
4583 4720 4.223953 ACATGATATGTACTCCCTCCGTT 58.776 43.478 0.00 0.00 42.78 4.44
4584 4721 3.845860 ACATGATATGTACTCCCTCCGT 58.154 45.455 0.00 0.00 42.78 4.69
4585 4722 5.977489 TTACATGATATGTACTCCCTCCG 57.023 43.478 0.00 0.00 44.79 4.63
4586 4723 6.595716 GCATTTACATGATATGTACTCCCTCC 59.404 42.308 0.00 0.00 44.79 4.30
4587 4724 7.390027 AGCATTTACATGATATGTACTCCCTC 58.610 38.462 0.00 0.00 44.79 4.30
4588 4725 7.236432 AGAGCATTTACATGATATGTACTCCCT 59.764 37.037 0.00 0.00 44.79 4.20
4589 4726 7.390027 AGAGCATTTACATGATATGTACTCCC 58.610 38.462 0.00 0.00 44.79 4.30
4590 4727 8.839310 AAGAGCATTTACATGATATGTACTCC 57.161 34.615 0.00 0.00 44.79 3.85
4659 4796 4.305989 ACAAAACAGTACCAAGCACATG 57.694 40.909 0.00 0.00 0.00 3.21
4669 4806 6.371389 GCAGGAAGTATGAACAAAACAGTAC 58.629 40.000 0.00 0.00 0.00 2.73
4689 4826 1.066143 CACTTAGTGGTACTGGGCAGG 60.066 57.143 4.14 0.00 0.00 4.85
4704 4841 7.698628 TCACATCGAACAAATCAAAACACTTA 58.301 30.769 0.00 0.00 0.00 2.24
4724 4861 8.186709 TCATATATCGGCATGATAGATCACAT 57.813 34.615 0.00 0.00 42.69 3.21
4756 4895 9.419593 TTGAGAGACAACCAATATGGGACAGAG 62.420 44.444 2.07 0.00 43.37 3.35
4757 4896 7.714754 TTGAGAGACAACCAATATGGGACAGA 61.715 42.308 2.07 0.00 43.37 3.41
4758 4897 5.571454 TTGAGAGACAACCAATATGGGACAG 60.571 44.000 2.07 0.00 43.37 3.51
4759 4898 3.843619 TGAGAGACAACCAATATGGGACA 59.156 43.478 2.07 0.00 43.37 4.02
4760 4899 4.487714 TGAGAGACAACCAATATGGGAC 57.512 45.455 2.07 0.00 43.37 4.46
4761 4900 5.253330 GTTTGAGAGACAACCAATATGGGA 58.747 41.667 2.07 0.00 43.37 4.37
4762 4901 4.094887 CGTTTGAGAGACAACCAATATGGG 59.905 45.833 0.00 0.00 43.37 4.00
4763 4902 4.094887 CCGTTTGAGAGACAACCAATATGG 59.905 45.833 0.00 0.00 45.02 2.74
4764 4903 4.935205 TCCGTTTGAGAGACAACCAATATG 59.065 41.667 0.00 0.00 38.29 1.78
4765 4904 5.160607 TCCGTTTGAGAGACAACCAATAT 57.839 39.130 0.00 0.00 38.29 1.28
4766 4905 4.610605 TCCGTTTGAGAGACAACCAATA 57.389 40.909 0.00 0.00 38.29 1.90
4767 4906 3.485463 TCCGTTTGAGAGACAACCAAT 57.515 42.857 0.00 0.00 38.29 3.16
4768 4907 2.992124 TCCGTTTGAGAGACAACCAA 57.008 45.000 0.00 0.00 38.29 3.67
4769 4908 2.104111 ACATCCGTTTGAGAGACAACCA 59.896 45.455 0.00 0.00 38.29 3.67
4770 4909 2.767505 ACATCCGTTTGAGAGACAACC 58.232 47.619 0.00 0.00 38.29 3.77
4771 4910 5.411781 AGATACATCCGTTTGAGAGACAAC 58.588 41.667 0.00 0.00 38.29 3.32
4772 4911 5.661056 AGATACATCCGTTTGAGAGACAA 57.339 39.130 0.00 0.00 36.65 3.18
4773 4912 5.221067 GCTAGATACATCCGTTTGAGAGACA 60.221 44.000 0.00 0.00 0.00 3.41
4774 4913 5.216648 GCTAGATACATCCGTTTGAGAGAC 58.783 45.833 0.00 0.00 0.00 3.36
4775 4914 4.887655 TGCTAGATACATCCGTTTGAGAGA 59.112 41.667 0.00 0.00 0.00 3.10
4776 4915 4.979197 GTGCTAGATACATCCGTTTGAGAG 59.021 45.833 0.00 0.00 0.00 3.20
4777 4916 4.645136 AGTGCTAGATACATCCGTTTGAGA 59.355 41.667 0.00 0.00 0.00 3.27
4778 4917 4.938080 AGTGCTAGATACATCCGTTTGAG 58.062 43.478 0.00 0.00 0.00 3.02
4779 4918 5.339008 AAGTGCTAGATACATCCGTTTGA 57.661 39.130 0.00 0.00 0.00 2.69
4780 4919 7.534085 TTTAAGTGCTAGATACATCCGTTTG 57.466 36.000 0.00 0.00 0.00 2.93
4781 4920 9.477484 CTATTTAAGTGCTAGATACATCCGTTT 57.523 33.333 0.00 0.00 0.00 3.60
4782 4921 8.088981 CCTATTTAAGTGCTAGATACATCCGTT 58.911 37.037 0.00 0.00 0.00 4.44
4783 4922 7.232941 ACCTATTTAAGTGCTAGATACATCCGT 59.767 37.037 0.00 0.00 0.00 4.69
4784 4923 7.542477 CACCTATTTAAGTGCTAGATACATCCG 59.458 40.741 0.00 0.00 0.00 4.18
4785 4924 8.368668 ACACCTATTTAAGTGCTAGATACATCC 58.631 37.037 0.00 0.00 37.51 3.51
4788 4927 9.636789 TCTACACCTATTTAAGTGCTAGATACA 57.363 33.333 0.00 0.00 37.51 2.29
4792 4931 9.636789 TGTATCTACACCTATTTAAGTGCTAGA 57.363 33.333 0.00 0.00 37.51 2.43
4795 4934 8.368668 GGATGTATCTACACCTATTTAAGTGCT 58.631 37.037 0.00 0.00 39.30 4.40
4796 4935 8.148351 TGGATGTATCTACACCTATTTAAGTGC 58.852 37.037 0.00 0.00 39.30 4.40
4802 4941 9.393786 AGGTAATGGATGTATCTACACCTATTT 57.606 33.333 10.00 1.08 39.30 1.40
4803 4942 8.974292 AGGTAATGGATGTATCTACACCTATT 57.026 34.615 10.00 0.00 39.30 1.73
4804 4943 9.702253 CTAGGTAATGGATGTATCTACACCTAT 57.298 37.037 15.11 0.00 37.52 2.57
4805 4944 8.676020 ACTAGGTAATGGATGTATCTACACCTA 58.324 37.037 14.48 14.48 39.30 3.08
4806 4945 7.536625 ACTAGGTAATGGATGTATCTACACCT 58.463 38.462 13.98 13.98 39.30 4.00
4807 4946 7.778185 ACTAGGTAATGGATGTATCTACACC 57.222 40.000 0.00 3.87 39.30 4.16
4809 4948 9.475620 CCATACTAGGTAATGGATGTATCTACA 57.524 37.037 13.16 0.00 40.98 2.74
4810 4949 8.915036 CCCATACTAGGTAATGGATGTATCTAC 58.085 40.741 17.91 0.00 36.31 2.59
4811 4950 8.852894 TCCCATACTAGGTAATGGATGTATCTA 58.147 37.037 17.91 0.00 36.31 1.98
4812 4951 7.719424 TCCCATACTAGGTAATGGATGTATCT 58.281 38.462 17.91 0.00 36.31 1.98
4813 4952 7.070074 CCTCCCATACTAGGTAATGGATGTATC 59.930 44.444 17.91 0.00 36.31 2.24
4814 4953 6.903534 CCTCCCATACTAGGTAATGGATGTAT 59.096 42.308 17.91 0.00 36.31 2.29
4815 4954 6.261435 CCTCCCATACTAGGTAATGGATGTA 58.739 44.000 17.91 4.82 36.31 2.29
4816 4955 5.094387 CCTCCCATACTAGGTAATGGATGT 58.906 45.833 17.91 0.00 36.31 3.06
4817 4956 4.471386 CCCTCCCATACTAGGTAATGGATG 59.529 50.000 17.91 11.55 36.31 3.51
4818 4957 4.363217 TCCCTCCCATACTAGGTAATGGAT 59.637 45.833 17.91 0.00 36.31 3.41
4819 4958 3.735984 TCCCTCCCATACTAGGTAATGGA 59.264 47.826 17.91 6.41 36.31 3.41
4820 4959 4.141990 TCCCTCCCATACTAGGTAATGG 57.858 50.000 11.99 11.99 0.00 3.16
4821 4960 4.471386 CCATCCCTCCCATACTAGGTAATG 59.529 50.000 0.00 0.00 0.00 1.90
4822 4961 4.363217 TCCATCCCTCCCATACTAGGTAAT 59.637 45.833 0.00 0.00 0.00 1.89
4823 4962 3.735984 TCCATCCCTCCCATACTAGGTAA 59.264 47.826 0.00 0.00 0.00 2.85
4824 4963 3.336997 CTCCATCCCTCCCATACTAGGTA 59.663 52.174 0.00 0.00 0.00 3.08
4825 4964 2.112691 CTCCATCCCTCCCATACTAGGT 59.887 54.545 0.00 0.00 0.00 3.08
4826 4965 2.112691 ACTCCATCCCTCCCATACTAGG 59.887 54.545 0.00 0.00 0.00 3.02
4827 4966 3.551635 ACTCCATCCCTCCCATACTAG 57.448 52.381 0.00 0.00 0.00 2.57
4828 4967 5.633473 AATACTCCATCCCTCCCATACTA 57.367 43.478 0.00 0.00 0.00 1.82
4829 4968 4.510303 AATACTCCATCCCTCCCATACT 57.490 45.455 0.00 0.00 0.00 2.12
4830 4969 9.845214 ATATATAATACTCCATCCCTCCCATAC 57.155 37.037 0.00 0.00 0.00 2.39
4831 4970 9.843704 CATATATAATACTCCATCCCTCCCATA 57.156 37.037 0.00 0.00 0.00 2.74
4832 4971 7.741288 CCATATATAATACTCCATCCCTCCCAT 59.259 40.741 0.00 0.00 0.00 4.00
4833 4972 7.082316 CCATATATAATACTCCATCCCTCCCA 58.918 42.308 0.00 0.00 0.00 4.37
4834 4973 7.235812 GTCCATATATAATACTCCATCCCTCCC 59.764 44.444 0.00 0.00 0.00 4.30
4835 4974 7.789831 TGTCCATATATAATACTCCATCCCTCC 59.210 40.741 0.00 0.00 0.00 4.30
4836 4975 8.783660 TGTCCATATATAATACTCCATCCCTC 57.216 38.462 0.00 0.00 0.00 4.30
4837 4976 8.355256 ACTGTCCATATATAATACTCCATCCCT 58.645 37.037 0.00 0.00 0.00 4.20
4838 4977 8.554490 ACTGTCCATATATAATACTCCATCCC 57.446 38.462 0.00 0.00 0.00 3.85
4870 5009 2.370849 AGAAAGCCGTAAACAGAAGGGA 59.629 45.455 0.00 0.00 0.00 4.20
4871 5010 2.742589 GAGAAAGCCGTAAACAGAAGGG 59.257 50.000 0.00 0.00 0.00 3.95
4884 5051 5.742926 GTCTACACAGTAATACGAGAAAGCC 59.257 44.000 0.00 0.00 0.00 4.35
4885 5052 6.553524 AGTCTACACAGTAATACGAGAAAGC 58.446 40.000 0.00 0.00 0.00 3.51
4903 5070 6.956202 TCAACTAGGTAATGGCTAGTCTAC 57.044 41.667 0.00 0.00 33.33 2.59
4913 5080 7.672983 ACATGACACTTTCAACTAGGTAATG 57.327 36.000 0.00 0.00 37.92 1.90
4931 5098 7.171678 GCTCTTTGTATAAGTGGGATACATGAC 59.828 40.741 0.00 0.00 39.05 3.06
4964 5132 7.385668 CAAGACATGCTACAAAACAAAGAAG 57.614 36.000 0.00 0.00 0.00 2.85
4994 5162 0.181587 TGCGTTCTTCTGGTTTCCCA 59.818 50.000 0.00 0.00 38.87 4.37
5069 5237 0.934496 TCTCAACAACGTTGGAAGCG 59.066 50.000 30.34 15.11 0.00 4.68
5126 5294 7.174107 AGTGCCAAGCATTTCATTAATTAGT 57.826 32.000 0.00 0.00 41.91 2.24
5195 5363 5.476599 TGCAACAAAGAACCAGTATGCTTAT 59.523 36.000 0.00 0.00 33.87 1.73
5279 5454 1.019673 AATTCAGCAGCCATAGCACG 58.980 50.000 0.00 0.00 43.56 5.34
5531 5712 5.626142 TCCAAAACCTTCTGCACTACATAA 58.374 37.500 0.00 0.00 0.00 1.90
5718 6602 9.014297 GTCTTAAAAAGGAAGAAGGATGAATCA 57.986 33.333 0.00 0.00 34.78 2.57
5719 6603 8.178313 CGTCTTAAAAAGGAAGAAGGATGAATC 58.822 37.037 0.00 0.00 34.78 2.52
5744 6628 0.248458 AAGAAGCAAACAACCACGCG 60.248 50.000 3.53 3.53 0.00 6.01
5761 6653 7.361127 CAAAGATATGCAGATTAGGAAGCAAG 58.639 38.462 0.00 0.00 40.76 4.01
6283 7395 9.567848 TTCTTTACAAAGACTGAAACATTTGAC 57.432 29.630 3.91 0.00 44.18 3.18
6381 7602 8.402798 TCTACCACACATGACAAAACATAATT 57.597 30.769 0.00 0.00 0.00 1.40
6479 8255 6.202954 AGGAAATAAGAGGAAAATATGTCGCG 59.797 38.462 0.00 0.00 0.00 5.87
6562 8343 3.369756 GCATGCAAATGTTCTTGTGATGG 59.630 43.478 14.21 0.00 0.00 3.51
6570 8351 5.507482 GCTATCATGAGCATGCAAATGTTCT 60.507 40.000 21.98 13.21 42.36 3.01
6589 8373 3.802948 TCCTCTCTTTCAACGGCTATC 57.197 47.619 0.00 0.00 0.00 2.08
6659 8444 8.302515 ACAAATATTTAGGAACGGAGAGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
6662 8447 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
6663 8448 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
6664 8449 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
6720 8505 9.710900 CTGCACTCCAAAATATGTCTATATACA 57.289 33.333 0.00 0.00 0.00 2.29
6721 8506 9.929180 TCTGCACTCCAAAATATGTCTATATAC 57.071 33.333 0.00 0.00 0.00 1.47
6725 8510 7.994911 TGAATCTGCACTCCAAAATATGTCTAT 59.005 33.333 0.00 0.00 0.00 1.98
6726 8511 7.280876 GTGAATCTGCACTCCAAAATATGTCTA 59.719 37.037 0.00 0.00 35.91 2.59
6727 8512 6.094603 GTGAATCTGCACTCCAAAATATGTCT 59.905 38.462 0.00 0.00 35.91 3.41
6728 8513 6.094603 AGTGAATCTGCACTCCAAAATATGTC 59.905 38.462 0.00 0.00 45.54 3.06
6729 8514 5.948162 AGTGAATCTGCACTCCAAAATATGT 59.052 36.000 0.00 0.00 45.54 2.29
6730 8515 6.446781 AGTGAATCTGCACTCCAAAATATG 57.553 37.500 0.00 0.00 45.54 1.78
6741 8526 4.170292 AGCAAAATGAGTGAATCTGCAC 57.830 40.909 0.00 0.00 39.05 4.57
6743 8528 4.986659 ACAAAGCAAAATGAGTGAATCTGC 59.013 37.500 0.00 0.00 0.00 4.26
6745 8530 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
6747 8532 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
6750 8535 7.535258 GTGACTACATACAAAGCAAAATGAGTG 59.465 37.037 0.00 0.00 0.00 3.51
6751 8536 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
6754 8539 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
6755 8540 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
6757 8542 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
6758 8543 6.935741 AACAAGTGACTACATACAAAGCAA 57.064 33.333 0.00 0.00 0.00 3.91
6760 8545 9.893305 AAATAAACAAGTGACTACATACAAAGC 57.107 29.630 0.00 0.00 0.00 3.51
6767 8552 9.445786 CGTTTCAAAATAAACAAGTGACTACAT 57.554 29.630 0.00 0.00 38.93 2.29
6768 8553 7.911205 CCGTTTCAAAATAAACAAGTGACTACA 59.089 33.333 0.00 0.00 38.93 2.74
6769 8554 8.124199 TCCGTTTCAAAATAAACAAGTGACTAC 58.876 33.333 0.00 0.00 38.93 2.73
6770 8555 8.211116 TCCGTTTCAAAATAAACAAGTGACTA 57.789 30.769 0.00 0.00 38.93 2.59
6771 8556 7.090953 TCCGTTTCAAAATAAACAAGTGACT 57.909 32.000 0.00 0.00 38.93 3.41
6772 8557 6.416750 CCTCCGTTTCAAAATAAACAAGTGAC 59.583 38.462 0.00 0.00 38.93 3.67
6773 8558 6.319152 TCCTCCGTTTCAAAATAAACAAGTGA 59.681 34.615 0.00 0.00 38.93 3.41
6774 8559 6.500041 TCCTCCGTTTCAAAATAAACAAGTG 58.500 36.000 0.00 0.00 38.93 3.16
6775 8560 6.702716 TCCTCCGTTTCAAAATAAACAAGT 57.297 33.333 0.00 0.00 38.93 3.16
6777 8562 7.102847 ACTTCCTCCGTTTCAAAATAAACAA 57.897 32.000 0.00 0.00 38.93 2.83
6778 8563 6.702716 ACTTCCTCCGTTTCAAAATAAACA 57.297 33.333 0.00 0.00 38.93 2.83
6780 8565 8.949177 GGTATACTTCCTCCGTTTCAAAATAAA 58.051 33.333 2.25 0.00 0.00 1.40
6781 8566 8.323567 AGGTATACTTCCTCCGTTTCAAAATAA 58.676 33.333 2.25 0.00 0.00 1.40
6782 8567 7.854337 AGGTATACTTCCTCCGTTTCAAAATA 58.146 34.615 2.25 0.00 0.00 1.40
6784 8569 6.117975 AGGTATACTTCCTCCGTTTCAAAA 57.882 37.500 2.25 0.00 0.00 2.44
6785 8570 5.750352 AGGTATACTTCCTCCGTTTCAAA 57.250 39.130 2.25 0.00 0.00 2.69
6786 8571 6.855763 TTAGGTATACTTCCTCCGTTTCAA 57.144 37.500 2.25 0.00 36.60 2.69
6787 8572 7.270047 CAATTAGGTATACTTCCTCCGTTTCA 58.730 38.462 2.25 0.00 36.60 2.69
6788 8573 6.202379 GCAATTAGGTATACTTCCTCCGTTTC 59.798 42.308 2.25 0.00 36.60 2.78
6790 8575 5.454329 GGCAATTAGGTATACTTCCTCCGTT 60.454 44.000 2.25 0.00 36.60 4.44
6791 8576 4.040095 GGCAATTAGGTATACTTCCTCCGT 59.960 45.833 2.25 0.00 36.60 4.69
6792 8577 4.283722 AGGCAATTAGGTATACTTCCTCCG 59.716 45.833 2.25 0.00 36.60 4.63
6793 8578 5.567025 CGAGGCAATTAGGTATACTTCCTCC 60.567 48.000 11.72 3.02 35.41 4.30
6794 8579 5.471257 CGAGGCAATTAGGTATACTTCCTC 58.529 45.833 2.25 6.27 36.60 3.71
6795 8580 4.283722 CCGAGGCAATTAGGTATACTTCCT 59.716 45.833 2.25 0.00 38.91 3.36
6796 8581 4.040095 ACCGAGGCAATTAGGTATACTTCC 59.960 45.833 2.25 0.00 34.83 3.46
6797 8582 5.211174 ACCGAGGCAATTAGGTATACTTC 57.789 43.478 2.25 0.00 34.83 3.01
6800 8585 6.336842 TCTAACCGAGGCAATTAGGTATAC 57.663 41.667 0.00 0.00 35.68 1.47
6809 8594 9.131791 ACAAATTATATTTCTAACCGAGGCAAT 57.868 29.630 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.