Multiple sequence alignment - TraesCS6B01G434200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434200 chr6B 100.000 3984 0 0 1 3984 702814267 702818250 0.000000e+00 7358
1 TraesCS6B01G434200 chr6B 97.619 168 4 0 3308 3475 559700332 559700499 5.040000e-74 289
2 TraesCS6B01G434200 chr6D 94.925 3330 117 17 1 3309 461332133 461335431 0.000000e+00 5166
3 TraesCS6B01G434200 chr6D 93.271 431 20 7 3561 3984 44091386 44091814 9.400000e-176 627
4 TraesCS6B01G434200 chr6D 93.617 94 2 2 3468 3560 461335426 461335516 1.930000e-28 137
5 TraesCS6B01G434200 chr6A 93.644 3351 145 24 1 3309 607930236 607933560 0.000000e+00 4946
6 TraesCS6B01G434200 chr6A 92.757 428 22 7 3559 3980 22909482 22909058 9.470000e-171 610
7 TraesCS6B01G434200 chr6A 92.575 431 20 10 3561 3984 356284297 356283872 3.400000e-170 608
8 TraesCS6B01G434200 chr6A 95.402 87 1 1 3474 3560 607933562 607933645 6.940000e-28 135
9 TraesCS6B01G434200 chr7B 94.808 443 14 5 3550 3984 485459340 485459781 0.000000e+00 682
10 TraesCS6B01G434200 chr7B 97.059 170 4 1 3311 3479 534818576 534818745 6.520000e-73 285
11 TraesCS6B01G434200 chr2B 93.503 431 19 7 3561 3984 154910285 154909857 2.020000e-177 632
12 TraesCS6B01G434200 chr2B 92.661 436 19 11 3556 3984 737171696 737171267 2.030000e-172 616
13 TraesCS6B01G434200 chr2B 95.480 177 8 0 3309 3485 793445435 793445259 2.340000e-72 283
14 TraesCS6B01G434200 chr2A 92.807 431 19 10 3561 3984 180210416 180209991 7.320000e-172 614
15 TraesCS6B01G434200 chr3B 92.063 441 18 11 3557 3984 532192558 532192994 4.400000e-169 604
16 TraesCS6B01G434200 chr3B 97.633 169 4 0 3310 3478 246304015 246303847 1.400000e-74 291
17 TraesCS6B01G434200 chr3B 92.737 179 12 1 3309 3487 807432234 807432411 1.420000e-64 257
18 TraesCS6B01G434200 chr3B 91.620 179 10 4 3311 3489 235888196 235888369 3.980000e-60 243
19 TraesCS6B01G434200 chr4B 92.326 430 22 9 3561 3984 450466806 450466382 5.700000e-168 601
20 TraesCS6B01G434200 chr5B 79.425 661 81 34 1770 2398 55519436 55520073 2.210000e-112 416
21 TraesCS6B01G434200 chr5B 97.093 172 5 0 3308 3479 622039371 622039200 1.400000e-74 291
22 TraesCS6B01G434200 chr5B 94.828 174 7 1 3311 3484 508562844 508563015 1.820000e-68 270
23 TraesCS6B01G434200 chr5B 89.806 206 19 2 2385 2589 55520094 55520298 3.050000e-66 263
24 TraesCS6B01G434200 chr5B 91.061 179 14 2 3299 3475 157026189 157026367 1.430000e-59 241
25 TraesCS6B01G434200 chr1D 96.571 175 6 0 3311 3485 403375156 403374982 1.400000e-74 291
26 TraesCS6B01G434200 chr1B 98.182 165 3 0 3311 3475 390401180 390401344 5.040000e-74 289
27 TraesCS6B01G434200 chr1B 97.605 167 4 0 3311 3477 526563369 526563535 1.810000e-73 287
28 TraesCS6B01G434200 chr1B 95.000 180 9 0 3306 3485 259414334 259414513 2.340000e-72 283
29 TraesCS6B01G434200 chr1B 91.209 182 14 2 3307 3488 354233245 354233424 3.070000e-61 246
30 TraesCS6B01G434200 chrUn 93.889 180 10 1 3309 3487 82595753 82595932 1.820000e-68 270
31 TraesCS6B01G434200 chr4A 92.614 176 12 1 3309 3484 36341963 36342137 6.610000e-63 252
32 TraesCS6B01G434200 chr5A 88.557 201 22 1 3308 3508 110665247 110665446 3.980000e-60 243
33 TraesCS6B01G434200 chr7D 91.061 179 14 2 3310 3486 206437621 206437443 1.430000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434200 chr6B 702814267 702818250 3983 False 7358.0 7358 100.0000 1 3984 1 chr6B.!!$F2 3983
1 TraesCS6B01G434200 chr6D 461332133 461335516 3383 False 2651.5 5166 94.2710 1 3560 2 chr6D.!!$F2 3559
2 TraesCS6B01G434200 chr6A 607930236 607933645 3409 False 2540.5 4946 94.5230 1 3560 2 chr6A.!!$F1 3559
3 TraesCS6B01G434200 chr5B 55519436 55520298 862 False 339.5 416 84.6155 1770 2589 2 chr5B.!!$F3 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 962 0.182775 GCCTGGGTCGATATGGGTTT 59.817 55.0 0.00 0.0 0.00 3.27 F
1639 1673 0.178068 TCTAAACTCTGCCGGATGCC 59.822 55.0 5.05 0.0 40.16 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2935 3036 0.676184 CGTCCTCGATCACCATCCAT 59.324 55.0 0.0 0.0 39.71 3.41 R
3624 3731 0.111253 AGGGGTGACTCTTGGCTTTG 59.889 55.0 0.0 0.0 38.96 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.936203 AACCAGCCCGCACTTCGA 61.936 61.111 0.00 0.00 41.67 3.71
297 298 2.810458 GCCTGCGCGTAACCGTTA 60.810 61.111 8.43 0.00 36.15 3.18
342 343 3.473647 CTCTGCGGCATCCCCTCA 61.474 66.667 1.75 0.00 0.00 3.86
356 357 1.228367 CCTCAAACACCAGCCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
365 366 2.677289 CCAGCCTGCTGTCCTCCAT 61.677 63.158 17.23 0.00 42.15 3.41
826 827 1.889573 GCCATGCTACCTCGCTTCC 60.890 63.158 0.00 0.00 0.00 3.46
827 828 1.227674 CCATGCTACCTCGCTTCCC 60.228 63.158 0.00 0.00 0.00 3.97
952 962 0.182775 GCCTGGGTCGATATGGGTTT 59.817 55.000 0.00 0.00 0.00 3.27
1117 1128 3.077556 GCCTCGCCTTCCTCTCCA 61.078 66.667 0.00 0.00 0.00 3.86
1283 1294 3.385384 CGAGGAGCAGCTGGACCA 61.385 66.667 17.12 0.00 0.00 4.02
1383 1410 3.778075 TCCCGATTAGGACAGGATGAAAA 59.222 43.478 0.00 0.00 45.00 2.29
1413 1440 2.923121 TGAATCATGCTCCAGCTAACC 58.077 47.619 0.00 0.00 42.66 2.85
1468 1495 3.653352 GCCTTATGGGGGTAGAAATCTCT 59.347 47.826 0.00 0.00 33.83 3.10
1600 1634 0.179137 CGTGTGCGATCCTTCTAGCA 60.179 55.000 0.00 0.00 41.33 3.49
1633 1667 3.782042 GGCGTCTAAACTCTGCCG 58.218 61.111 0.00 0.00 35.77 5.69
1634 1668 1.810030 GGCGTCTAAACTCTGCCGG 60.810 63.158 0.00 0.00 35.77 6.13
1635 1669 1.214589 GCGTCTAAACTCTGCCGGA 59.785 57.895 5.05 0.00 0.00 5.14
1636 1670 0.179108 GCGTCTAAACTCTGCCGGAT 60.179 55.000 5.05 0.00 0.00 4.18
1637 1671 1.560923 CGTCTAAACTCTGCCGGATG 58.439 55.000 5.05 0.00 0.00 3.51
1638 1672 1.291132 GTCTAAACTCTGCCGGATGC 58.709 55.000 5.05 0.00 41.77 3.91
1639 1673 0.178068 TCTAAACTCTGCCGGATGCC 59.822 55.000 5.05 0.00 40.16 4.40
1640 1674 0.815615 CTAAACTCTGCCGGATGCCC 60.816 60.000 5.05 0.00 40.16 5.36
1641 1675 1.558167 TAAACTCTGCCGGATGCCCA 61.558 55.000 5.05 0.00 40.16 5.36
1642 1676 2.215451 AAACTCTGCCGGATGCCCAT 62.215 55.000 5.05 0.00 40.16 4.00
1643 1677 2.593725 CTCTGCCGGATGCCCATG 60.594 66.667 5.05 0.00 40.16 3.66
1644 1678 4.193893 TCTGCCGGATGCCCATGG 62.194 66.667 5.05 4.14 40.16 3.66
1645 1679 4.193893 CTGCCGGATGCCCATGGA 62.194 66.667 15.22 0.00 40.16 3.41
1646 1680 4.504596 TGCCGGATGCCCATGGAC 62.505 66.667 15.22 0.55 40.16 4.02
1647 1681 4.195334 GCCGGATGCCCATGGACT 62.195 66.667 15.22 0.00 0.00 3.85
1648 1682 2.111878 CCGGATGCCCATGGACTC 59.888 66.667 15.22 6.47 0.00 3.36
1658 1692 1.753073 CCCATGGACTCAAATCTTGGC 59.247 52.381 15.22 0.00 0.00 4.52
1666 1700 0.313672 TCAAATCTTGGCGGTTGTGC 59.686 50.000 0.00 0.00 0.00 4.57
1709 1743 3.546002 TTTCCCGAAACGCAACAATAG 57.454 42.857 0.00 0.00 0.00 1.73
1739 1773 2.613691 CCTGCACATTCCATTTTGCTC 58.386 47.619 0.00 0.00 35.91 4.26
1954 2001 3.507233 TCGACAGTAGGTTCCGTAAATGT 59.493 43.478 0.00 0.00 0.00 2.71
2103 2167 4.940046 AGGAAATGCATATATCTGAAGCCG 59.060 41.667 0.00 0.00 0.00 5.52
2134 2198 5.824904 AAAGTTGGCAGCAGAATACTATG 57.175 39.130 3.63 0.00 0.00 2.23
2158 2222 1.541588 GGTTAGAGCTTTGGTTGCCAG 59.458 52.381 0.00 0.00 33.81 4.85
2159 2223 2.504367 GTTAGAGCTTTGGTTGCCAGA 58.496 47.619 0.00 0.00 33.81 3.86
2339 2406 2.844451 TTGGTTCTGCGGTGCTTGC 61.844 57.895 0.00 0.00 0.00 4.01
2372 2439 6.910536 ACGAACAATGATATCAGAACCTTC 57.089 37.500 11.78 6.47 0.00 3.46
2556 2657 0.881796 GCTTCCTGCAACTTGTACCC 59.118 55.000 0.00 0.00 42.31 3.69
2686 2787 7.367285 TCTTGTCCTGCAACAATTAAATACAC 58.633 34.615 4.49 0.00 38.41 2.90
3066 3167 3.010420 AGAAAACAAGATAAGAGGCGGC 58.990 45.455 0.00 0.00 0.00 6.53
3152 3253 0.831307 GACGCCTAGGGTTCTTGGAT 59.169 55.000 11.72 0.00 37.99 3.41
3260 3363 2.305009 GGGATCAGAAGGCTTTCCATG 58.695 52.381 15.62 7.07 33.64 3.66
3261 3364 2.092212 GGGATCAGAAGGCTTTCCATGA 60.092 50.000 15.62 11.43 33.64 3.07
3291 3398 9.836076 CATCATGTAGCAATAAAATATCCAGTG 57.164 33.333 0.00 0.00 0.00 3.66
3309 3416 3.188048 CAGTGAATGACCTTGCAGAGAAC 59.812 47.826 0.00 0.00 0.00 3.01
3310 3417 3.072184 AGTGAATGACCTTGCAGAGAACT 59.928 43.478 0.00 0.00 0.00 3.01
3311 3418 4.284490 AGTGAATGACCTTGCAGAGAACTA 59.716 41.667 0.00 0.00 0.00 2.24
3312 3419 4.390297 GTGAATGACCTTGCAGAGAACTAC 59.610 45.833 0.00 0.00 0.00 2.73
3313 3420 4.284490 TGAATGACCTTGCAGAGAACTACT 59.716 41.667 0.00 0.00 0.00 2.57
3314 3421 3.944055 TGACCTTGCAGAGAACTACTC 57.056 47.619 0.00 0.00 45.22 2.59
3315 3422 2.563179 TGACCTTGCAGAGAACTACTCC 59.437 50.000 0.00 0.00 45.96 3.85
3316 3423 1.903183 ACCTTGCAGAGAACTACTCCC 59.097 52.381 0.00 0.00 45.96 4.30
3317 3424 2.183679 CCTTGCAGAGAACTACTCCCT 58.816 52.381 0.00 0.00 45.96 4.20
3318 3425 2.167487 CCTTGCAGAGAACTACTCCCTC 59.833 54.545 0.00 0.00 45.96 4.30
3319 3426 1.853963 TGCAGAGAACTACTCCCTCC 58.146 55.000 0.00 0.00 45.96 4.30
3320 3427 0.741915 GCAGAGAACTACTCCCTCCG 59.258 60.000 0.00 0.00 45.96 4.63
3321 3428 1.956159 GCAGAGAACTACTCCCTCCGT 60.956 57.143 0.00 0.00 45.96 4.69
3322 3429 2.448453 CAGAGAACTACTCCCTCCGTT 58.552 52.381 0.00 0.00 45.96 4.44
3323 3430 2.424246 CAGAGAACTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 45.96 3.95
3324 3431 1.750206 GAGAACTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 39.53 3.62
3325 3432 1.358445 AGAACTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 37.15 3.36
3326 3433 2.579860 AGAACTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 37.15 2.94
3327 3434 3.011032 AGAACTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 37.15 2.69
3328 3435 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3329 3436 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3330 3437 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3331 3438 5.522641 ACTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
3332 3439 6.141790 ACTACTCCCTCCGTTCCTAAATAAT 58.858 40.000 0.00 0.00 0.00 1.28
3333 3440 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
3334 3441 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
3335 3442 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
3336 3443 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
3337 3444 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
3338 3445 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
3339 3446 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
3340 3447 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
3341 3448 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
3342 3449 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
3343 3450 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
3344 3451 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
3359 3466 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
3368 3475 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
3369 3476 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
3370 3477 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3371 3478 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3372 3479 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3373 3480 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3374 3481 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3375 3482 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3376 3483 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3377 3484 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3378 3485 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3379 3486 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3380 3487 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3381 3488 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3382 3489 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3383 3490 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3384 3491 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3385 3492 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3386 3493 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3387 3494 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3388 3495 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3389 3496 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3390 3497 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3391 3498 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
3392 3499 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
3393 3500 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
3394 3501 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
3395 3502 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
3396 3503 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
3403 3510 9.725019 TGAGTGAATCTACATTCTAAAACATGT 57.275 29.630 0.00 0.00 39.49 3.21
3405 3512 9.950496 AGTGAATCTACATTCTAAAACATGTCT 57.050 29.630 0.00 0.00 39.49 3.41
3434 3541 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
3435 3542 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
3436 3543 7.550551 ACATCTGTATGTTGTAGTCCATTTGAG 59.449 37.037 0.00 0.00 44.07 3.02
3437 3544 7.239763 TCTGTATGTTGTAGTCCATTTGAGA 57.760 36.000 0.00 0.00 0.00 3.27
3438 3545 7.851228 TCTGTATGTTGTAGTCCATTTGAGAT 58.149 34.615 0.00 0.00 0.00 2.75
3439 3546 7.765819 TCTGTATGTTGTAGTCCATTTGAGATG 59.234 37.037 0.00 0.00 0.00 2.90
3440 3547 6.823182 TGTATGTTGTAGTCCATTTGAGATGG 59.177 38.462 0.00 0.00 40.48 3.51
3441 3548 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
3442 3549 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
3443 3550 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
3444 3551 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
3445 3552 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
3446 3553 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
3447 3554 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
3448 3555 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
3449 3556 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
3450 3557 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
3452 3559 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
3453 3560 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
3454 3561 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
3455 3562 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
3456 3563 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
3457 3564 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
3458 3565 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
3459 3566 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
3460 3567 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
3461 3568 6.773976 TGGCTAGAAAGACAATTATTTGGG 57.226 37.500 0.00 0.00 38.01 4.12
3462 3569 6.489603 TGGCTAGAAAGACAATTATTTGGGA 58.510 36.000 0.00 0.00 38.01 4.37
3463 3570 6.951198 TGGCTAGAAAGACAATTATTTGGGAA 59.049 34.615 0.00 0.00 38.01 3.97
3464 3571 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
3465 3572 6.967199 GCTAGAAAGACAATTATTTGGGAACG 59.033 38.462 0.00 0.00 37.15 3.95
3466 3573 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
3467 3574 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
3468 3575 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
3469 3576 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
3470 3577 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
3471 3578 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
3472 3579 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3498 3605 0.112218 ACATGCTGGGTGCTTTGGTA 59.888 50.000 0.00 0.00 43.37 3.25
3560 3667 9.797642 TTGCACAGATGGATAAACAGAATATAT 57.202 29.630 0.00 0.00 0.00 0.86
3561 3668 9.797642 TGCACAGATGGATAAACAGAATATATT 57.202 29.630 0.00 0.00 0.00 1.28
3601 3708 3.978164 GGAGAGGATCCCCACCTG 58.022 66.667 8.55 0.00 43.01 4.00
3602 3709 1.314867 GGAGAGGATCCCCACCTGA 59.685 63.158 8.55 0.00 43.01 3.86
3603 3710 0.326618 GGAGAGGATCCCCACCTGAA 60.327 60.000 8.55 0.00 43.01 3.02
3604 3711 1.697291 GGAGAGGATCCCCACCTGAAT 60.697 57.143 8.55 0.00 43.01 2.57
3605 3712 2.427889 GGAGAGGATCCCCACCTGAATA 60.428 54.545 8.55 0.00 43.01 1.75
3606 3713 3.525862 GAGAGGATCCCCACCTGAATAT 58.474 50.000 8.55 0.00 37.93 1.28
3607 3714 4.512942 GGAGAGGATCCCCACCTGAATATA 60.513 50.000 8.55 0.00 43.01 0.86
3608 3715 5.284582 GAGAGGATCCCCACCTGAATATAT 58.715 45.833 8.55 0.00 37.93 0.86
3609 3716 5.680327 AGAGGATCCCCACCTGAATATATT 58.320 41.667 8.55 0.00 37.93 1.28
3610 3717 5.490357 AGAGGATCCCCACCTGAATATATTG 59.510 44.000 8.55 0.00 37.93 1.90
3611 3718 4.018050 AGGATCCCCACCTGAATATATTGC 60.018 45.833 8.55 0.00 36.30 3.56
3612 3719 4.018050 GGATCCCCACCTGAATATATTGCT 60.018 45.833 1.78 0.00 0.00 3.91
3613 3720 4.640771 TCCCCACCTGAATATATTGCTC 57.359 45.455 1.78 0.00 0.00 4.26
3614 3721 3.980022 TCCCCACCTGAATATATTGCTCA 59.020 43.478 1.78 0.00 0.00 4.26
3615 3722 4.415179 TCCCCACCTGAATATATTGCTCAA 59.585 41.667 1.78 0.00 0.00 3.02
3616 3723 5.103728 TCCCCACCTGAATATATTGCTCAAA 60.104 40.000 1.78 0.00 0.00 2.69
3617 3724 5.598005 CCCCACCTGAATATATTGCTCAAAA 59.402 40.000 1.78 0.00 0.00 2.44
3618 3725 6.098124 CCCCACCTGAATATATTGCTCAAAAA 59.902 38.462 1.78 0.00 0.00 1.94
3619 3726 7.205297 CCCACCTGAATATATTGCTCAAAAAG 58.795 38.462 1.78 0.00 0.00 2.27
3638 3745 3.025924 CTGCCAAAGCCAAGAGTCA 57.974 52.632 0.00 0.00 38.69 3.41
3639 3746 0.595095 CTGCCAAAGCCAAGAGTCAC 59.405 55.000 0.00 0.00 38.69 3.67
3640 3747 0.823356 TGCCAAAGCCAAGAGTCACC 60.823 55.000 0.00 0.00 38.69 4.02
3641 3748 1.527433 GCCAAAGCCAAGAGTCACCC 61.527 60.000 0.00 0.00 0.00 4.61
3642 3749 0.895559 CCAAAGCCAAGAGTCACCCC 60.896 60.000 0.00 0.00 0.00 4.95
3643 3750 0.111253 CAAAGCCAAGAGTCACCCCT 59.889 55.000 0.00 0.00 0.00 4.79
3644 3751 0.853530 AAAGCCAAGAGTCACCCCTT 59.146 50.000 0.00 0.00 0.00 3.95
3645 3752 1.742308 AAGCCAAGAGTCACCCCTTA 58.258 50.000 0.00 0.00 0.00 2.69
3646 3753 1.742308 AGCCAAGAGTCACCCCTTAA 58.258 50.000 0.00 0.00 0.00 1.85
3647 3754 1.351350 AGCCAAGAGTCACCCCTTAAC 59.649 52.381 0.00 0.00 0.00 2.01
3648 3755 1.351350 GCCAAGAGTCACCCCTTAACT 59.649 52.381 0.00 0.00 0.00 2.24
3649 3756 2.224793 GCCAAGAGTCACCCCTTAACTT 60.225 50.000 0.00 0.00 0.00 2.66
3650 3757 3.750922 GCCAAGAGTCACCCCTTAACTTT 60.751 47.826 0.00 0.00 0.00 2.66
3651 3758 3.821033 CCAAGAGTCACCCCTTAACTTTG 59.179 47.826 0.00 0.00 0.00 2.77
3652 3759 3.790089 AGAGTCACCCCTTAACTTTGG 57.210 47.619 0.00 0.00 0.00 3.28
3653 3760 2.160205 GAGTCACCCCTTAACTTTGGC 58.840 52.381 0.00 0.00 0.00 4.52
3654 3761 1.780919 AGTCACCCCTTAACTTTGGCT 59.219 47.619 0.00 0.00 0.00 4.75
3655 3762 1.886542 GTCACCCCTTAACTTTGGCTG 59.113 52.381 0.00 0.00 0.00 4.85
3656 3763 1.777878 TCACCCCTTAACTTTGGCTGA 59.222 47.619 0.00 0.00 0.00 4.26
3657 3764 2.378547 TCACCCCTTAACTTTGGCTGAT 59.621 45.455 0.00 0.00 0.00 2.90
3658 3765 2.755103 CACCCCTTAACTTTGGCTGATC 59.245 50.000 0.00 0.00 0.00 2.92
3659 3766 2.291605 ACCCCTTAACTTTGGCTGATCC 60.292 50.000 0.00 0.00 0.00 3.36
3660 3767 2.291540 CCCCTTAACTTTGGCTGATCCA 60.292 50.000 0.00 0.00 44.85 3.41
3672 3779 5.708736 TGGCTGATCCAGTTTATAAGGAA 57.291 39.130 0.00 0.00 40.72 3.36
3673 3780 6.073447 TGGCTGATCCAGTTTATAAGGAAA 57.927 37.500 0.00 0.00 40.72 3.13
3674 3781 6.489603 TGGCTGATCCAGTTTATAAGGAAAA 58.510 36.000 0.00 0.00 40.72 2.29
3675 3782 6.377146 TGGCTGATCCAGTTTATAAGGAAAAC 59.623 38.462 0.00 0.00 40.72 2.43
3676 3783 6.183360 GGCTGATCCAGTTTATAAGGAAAACC 60.183 42.308 0.00 0.00 37.51 3.27
3677 3784 6.458342 GCTGATCCAGTTTATAAGGAAAACCG 60.458 42.308 0.00 0.00 37.51 4.44
3678 3785 5.883673 TGATCCAGTTTATAAGGAAAACCGG 59.116 40.000 0.00 0.00 37.51 5.28
3679 3786 5.502089 TCCAGTTTATAAGGAAAACCGGA 57.498 39.130 9.46 0.63 39.79 5.14
3680 3787 6.069705 TCCAGTTTATAAGGAAAACCGGAT 57.930 37.500 9.46 0.00 38.09 4.18
3681 3788 6.117488 TCCAGTTTATAAGGAAAACCGGATC 58.883 40.000 9.46 2.88 38.09 3.36
3682 3789 5.007332 CCAGTTTATAAGGAAAACCGGATCG 59.993 44.000 9.46 0.00 36.79 3.69
3683 3790 5.813672 CAGTTTATAAGGAAAACCGGATCGA 59.186 40.000 9.46 0.00 37.51 3.59
3684 3791 6.314400 CAGTTTATAAGGAAAACCGGATCGAA 59.686 38.462 9.46 0.00 37.51 3.71
3685 3792 6.880529 AGTTTATAAGGAAAACCGGATCGAAA 59.119 34.615 9.46 0.00 37.51 3.46
3686 3793 7.391275 AGTTTATAAGGAAAACCGGATCGAAAA 59.609 33.333 9.46 0.00 37.51 2.29
3687 3794 7.868906 TTATAAGGAAAACCGGATCGAAAAT 57.131 32.000 9.46 0.00 0.00 1.82
3688 3795 6.769134 ATAAGGAAAACCGGATCGAAAATT 57.231 33.333 9.46 0.00 0.00 1.82
3689 3796 7.868906 ATAAGGAAAACCGGATCGAAAATTA 57.131 32.000 9.46 0.00 0.00 1.40
3690 3797 6.578163 AAGGAAAACCGGATCGAAAATTAA 57.422 33.333 9.46 0.00 0.00 1.40
3691 3798 6.578163 AGGAAAACCGGATCGAAAATTAAA 57.422 33.333 9.46 0.00 0.00 1.52
3692 3799 6.384224 AGGAAAACCGGATCGAAAATTAAAC 58.616 36.000 9.46 0.00 0.00 2.01
3693 3800 6.016108 AGGAAAACCGGATCGAAAATTAAACA 60.016 34.615 9.46 0.00 0.00 2.83
3694 3801 6.641723 GGAAAACCGGATCGAAAATTAAACAA 59.358 34.615 9.46 0.00 0.00 2.83
3695 3802 7.148869 GGAAAACCGGATCGAAAATTAAACAAG 60.149 37.037 9.46 0.00 0.00 3.16
3696 3803 5.952526 ACCGGATCGAAAATTAAACAAGT 57.047 34.783 9.46 0.00 0.00 3.16
3697 3804 6.321848 ACCGGATCGAAAATTAAACAAGTT 57.678 33.333 9.46 0.00 0.00 2.66
3698 3805 6.146898 ACCGGATCGAAAATTAAACAAGTTG 58.853 36.000 9.46 0.00 0.00 3.16
3699 3806 6.016943 ACCGGATCGAAAATTAAACAAGTTGA 60.017 34.615 9.46 0.00 0.00 3.18
3700 3807 6.304683 CCGGATCGAAAATTAAACAAGTTGAC 59.695 38.462 10.54 0.00 0.00 3.18
3701 3808 6.304683 CGGATCGAAAATTAAACAAGTTGACC 59.695 38.462 10.54 0.00 0.00 4.02
3702 3809 6.584942 GGATCGAAAATTAAACAAGTTGACCC 59.415 38.462 10.54 0.00 0.00 4.46
3703 3810 5.834169 TCGAAAATTAAACAAGTTGACCCC 58.166 37.500 10.54 0.00 0.00 4.95
3704 3811 4.677832 CGAAAATTAAACAAGTTGACCCCG 59.322 41.667 10.54 0.00 0.00 5.73
3705 3812 5.593968 GAAAATTAAACAAGTTGACCCCGT 58.406 37.500 10.54 0.00 0.00 5.28
3706 3813 5.601583 AAATTAAACAAGTTGACCCCGTT 57.398 34.783 10.54 0.00 0.00 4.44
3707 3814 5.601583 AATTAAACAAGTTGACCCCGTTT 57.398 34.783 10.54 1.06 34.40 3.60
3708 3815 6.712179 AATTAAACAAGTTGACCCCGTTTA 57.288 33.333 10.54 0.07 32.42 2.01
3709 3816 6.904463 ATTAAACAAGTTGACCCCGTTTAT 57.096 33.333 10.54 0.00 33.43 1.40
3710 3817 4.577834 AAACAAGTTGACCCCGTTTATG 57.422 40.909 10.54 0.00 0.00 1.90
3711 3818 3.495434 ACAAGTTGACCCCGTTTATGA 57.505 42.857 10.54 0.00 0.00 2.15
3712 3819 3.408634 ACAAGTTGACCCCGTTTATGAG 58.591 45.455 10.54 0.00 0.00 2.90
3713 3820 2.747446 CAAGTTGACCCCGTTTATGAGG 59.253 50.000 0.00 0.00 0.00 3.86
3729 3836 2.598099 GGGAAACCGGGCCGAAAA 60.598 61.111 30.79 0.00 43.64 2.29
3730 3837 2.201708 GGGAAACCGGGCCGAAAAA 61.202 57.895 30.79 0.00 43.64 1.94
3731 3838 1.007038 GGAAACCGGGCCGAAAAAC 60.007 57.895 30.79 14.02 0.00 2.43
3732 3839 1.007038 GAAACCGGGCCGAAAAACC 60.007 57.895 30.79 7.39 0.00 3.27
3733 3840 2.736343 GAAACCGGGCCGAAAAACCG 62.736 60.000 30.79 11.41 46.79 4.44
3736 3843 4.693525 CGGGCCGAAAAACCGCAC 62.694 66.667 24.41 0.00 41.23 5.34
3737 3844 3.597728 GGGCCGAAAAACCGCACA 61.598 61.111 0.00 0.00 0.00 4.57
3738 3845 2.050442 GGCCGAAAAACCGCACAG 60.050 61.111 0.00 0.00 0.00 3.66
3739 3846 2.548295 GGCCGAAAAACCGCACAGA 61.548 57.895 0.00 0.00 0.00 3.41
3740 3847 1.579429 GCCGAAAAACCGCACAGAT 59.421 52.632 0.00 0.00 0.00 2.90
3741 3848 0.800012 GCCGAAAAACCGCACAGATA 59.200 50.000 0.00 0.00 0.00 1.98
3742 3849 1.198178 GCCGAAAAACCGCACAGATAA 59.802 47.619 0.00 0.00 0.00 1.75
3743 3850 2.846693 CCGAAAAACCGCACAGATAAC 58.153 47.619 0.00 0.00 0.00 1.89
3744 3851 2.224549 CCGAAAAACCGCACAGATAACA 59.775 45.455 0.00 0.00 0.00 2.41
3745 3852 3.304123 CCGAAAAACCGCACAGATAACAA 60.304 43.478 0.00 0.00 0.00 2.83
3746 3853 3.906008 CGAAAAACCGCACAGATAACAAG 59.094 43.478 0.00 0.00 0.00 3.16
3747 3854 3.915437 AAAACCGCACAGATAACAAGG 57.085 42.857 0.00 0.00 0.00 3.61
3748 3855 2.561478 AACCGCACAGATAACAAGGT 57.439 45.000 0.00 0.00 0.00 3.50
3749 3856 2.561478 ACCGCACAGATAACAAGGTT 57.439 45.000 0.00 0.00 0.00 3.50
3750 3857 3.688694 ACCGCACAGATAACAAGGTTA 57.311 42.857 0.00 0.00 0.00 2.85
3751 3858 3.332034 ACCGCACAGATAACAAGGTTAC 58.668 45.455 0.00 0.00 0.00 2.50
3752 3859 3.244284 ACCGCACAGATAACAAGGTTACA 60.244 43.478 0.00 0.00 0.00 2.41
3753 3860 3.749088 CCGCACAGATAACAAGGTTACAA 59.251 43.478 0.00 0.00 0.00 2.41
3754 3861 4.214545 CCGCACAGATAACAAGGTTACAAA 59.785 41.667 0.00 0.00 0.00 2.83
3755 3862 5.278071 CCGCACAGATAACAAGGTTACAAAA 60.278 40.000 0.00 0.00 0.00 2.44
3756 3863 5.851177 CGCACAGATAACAAGGTTACAAAAG 59.149 40.000 0.00 0.00 0.00 2.27
3757 3864 6.293190 CGCACAGATAACAAGGTTACAAAAGA 60.293 38.462 0.00 0.00 0.00 2.52
3758 3865 7.573096 CGCACAGATAACAAGGTTACAAAAGAT 60.573 37.037 0.00 0.00 0.00 2.40
3759 3866 7.538678 GCACAGATAACAAGGTTACAAAAGATG 59.461 37.037 0.00 0.00 0.00 2.90
3760 3867 8.783093 CACAGATAACAAGGTTACAAAAGATGA 58.217 33.333 0.00 0.00 0.00 2.92
3761 3868 9.003658 ACAGATAACAAGGTTACAAAAGATGAG 57.996 33.333 0.00 0.00 0.00 2.90
3762 3869 9.219603 CAGATAACAAGGTTACAAAAGATGAGA 57.780 33.333 0.00 0.00 0.00 3.27
3763 3870 9.793259 AGATAACAAGGTTACAAAAGATGAGAA 57.207 29.630 0.00 0.00 0.00 2.87
3782 3889 2.397044 AAAAATGCCACCCAGGAGAA 57.603 45.000 0.00 0.00 41.22 2.87
3783 3890 1.928868 AAAATGCCACCCAGGAGAAG 58.071 50.000 0.00 0.00 41.22 2.85
3784 3891 0.040204 AAATGCCACCCAGGAGAAGG 59.960 55.000 0.00 0.00 41.22 3.46
3785 3892 2.505364 AATGCCACCCAGGAGAAGGC 62.505 60.000 0.00 0.00 45.41 4.35
3786 3893 3.650950 GCCACCCAGGAGAAGGCA 61.651 66.667 0.00 0.00 44.59 4.75
3787 3894 2.988839 GCCACCCAGGAGAAGGCAT 61.989 63.158 0.00 0.00 44.59 4.40
3788 3895 1.077212 CCACCCAGGAGAAGGCATG 60.077 63.158 0.00 0.00 41.22 4.06
3789 3896 1.565390 CCACCCAGGAGAAGGCATGA 61.565 60.000 0.00 0.00 41.22 3.07
3790 3897 0.393537 CACCCAGGAGAAGGCATGAC 60.394 60.000 0.00 0.00 0.00 3.06
3791 3898 1.225704 CCCAGGAGAAGGCATGACC 59.774 63.158 0.00 0.00 39.61 4.02
3803 3910 2.565841 GGCATGACCTAGCTAAACAGG 58.434 52.381 0.00 0.00 37.97 4.00
3804 3911 1.943340 GCATGACCTAGCTAAACAGGC 59.057 52.381 12.62 12.62 35.14 4.85
3805 3912 2.680805 GCATGACCTAGCTAAACAGGCA 60.681 50.000 18.91 11.01 38.00 4.75
3806 3913 3.201290 CATGACCTAGCTAAACAGGCAG 58.799 50.000 0.00 0.00 35.14 4.85
3807 3914 2.536066 TGACCTAGCTAAACAGGCAGA 58.464 47.619 0.00 0.00 35.14 4.26
3808 3915 2.903784 TGACCTAGCTAAACAGGCAGAA 59.096 45.455 0.00 0.00 35.14 3.02
3809 3916 3.326588 TGACCTAGCTAAACAGGCAGAAA 59.673 43.478 0.00 0.00 35.14 2.52
3810 3917 3.935828 GACCTAGCTAAACAGGCAGAAAG 59.064 47.826 0.00 0.00 35.14 2.62
3811 3918 3.583086 ACCTAGCTAAACAGGCAGAAAGA 59.417 43.478 0.00 0.00 35.14 2.52
3812 3919 3.935828 CCTAGCTAAACAGGCAGAAAGAC 59.064 47.826 0.00 0.00 0.00 3.01
3813 3920 2.784347 AGCTAAACAGGCAGAAAGACC 58.216 47.619 0.00 0.00 0.00 3.85
3814 3921 2.106511 AGCTAAACAGGCAGAAAGACCA 59.893 45.455 0.00 0.00 0.00 4.02
3815 3922 2.226674 GCTAAACAGGCAGAAAGACCAC 59.773 50.000 0.00 0.00 0.00 4.16
3816 3923 1.692411 AAACAGGCAGAAAGACCACC 58.308 50.000 0.00 0.00 0.00 4.61
3817 3924 0.550914 AACAGGCAGAAAGACCACCA 59.449 50.000 0.00 0.00 0.00 4.17
3818 3925 0.179018 ACAGGCAGAAAGACCACCAC 60.179 55.000 0.00 0.00 0.00 4.16
3819 3926 1.071471 AGGCAGAAAGACCACCACG 59.929 57.895 0.00 0.00 0.00 4.94
3820 3927 1.070786 GGCAGAAAGACCACCACGA 59.929 57.895 0.00 0.00 0.00 4.35
3821 3928 0.951040 GGCAGAAAGACCACCACGAG 60.951 60.000 0.00 0.00 0.00 4.18
3822 3929 0.033504 GCAGAAAGACCACCACGAGA 59.966 55.000 0.00 0.00 0.00 4.04
3823 3930 1.937108 GCAGAAAGACCACCACGAGAG 60.937 57.143 0.00 0.00 0.00 3.20
3824 3931 1.613925 CAGAAAGACCACCACGAGAGA 59.386 52.381 0.00 0.00 0.00 3.10
3825 3932 1.614413 AGAAAGACCACCACGAGAGAC 59.386 52.381 0.00 0.00 0.00 3.36
3826 3933 1.340248 GAAAGACCACCACGAGAGACA 59.660 52.381 0.00 0.00 0.00 3.41
3827 3934 0.674534 AAGACCACCACGAGAGACAC 59.325 55.000 0.00 0.00 0.00 3.67
3828 3935 0.467474 AGACCACCACGAGAGACACA 60.467 55.000 0.00 0.00 0.00 3.72
3829 3936 0.387929 GACCACCACGAGAGACACAA 59.612 55.000 0.00 0.00 0.00 3.33
3830 3937 0.389391 ACCACCACGAGAGACACAAG 59.611 55.000 0.00 0.00 0.00 3.16
3831 3938 0.389391 CCACCACGAGAGACACAAGT 59.611 55.000 0.00 0.00 0.00 3.16
3832 3939 1.611977 CCACCACGAGAGACACAAGTA 59.388 52.381 0.00 0.00 0.00 2.24
3833 3940 2.351835 CCACCACGAGAGACACAAGTAG 60.352 54.545 0.00 0.00 0.00 2.57
3834 3941 2.552743 CACCACGAGAGACACAAGTAGA 59.447 50.000 0.00 0.00 0.00 2.59
3835 3942 3.191581 CACCACGAGAGACACAAGTAGAT 59.808 47.826 0.00 0.00 0.00 1.98
3836 3943 3.191581 ACCACGAGAGACACAAGTAGATG 59.808 47.826 0.00 0.00 0.00 2.90
3837 3944 3.191581 CCACGAGAGACACAAGTAGATGT 59.808 47.826 0.00 0.00 0.00 3.06
3844 3951 1.453155 CACAAGTAGATGTGGGGTGC 58.547 55.000 0.00 0.00 45.47 5.01
3845 3952 1.003580 CACAAGTAGATGTGGGGTGCT 59.996 52.381 0.00 0.00 45.47 4.40
3846 3953 1.003580 ACAAGTAGATGTGGGGTGCTG 59.996 52.381 0.00 0.00 30.82 4.41
3847 3954 0.035056 AAGTAGATGTGGGGTGCTGC 60.035 55.000 0.00 0.00 0.00 5.25
3848 3955 1.452108 GTAGATGTGGGGTGCTGCC 60.452 63.158 0.00 0.00 0.00 4.85
3849 3956 3.030168 TAGATGTGGGGTGCTGCCG 62.030 63.158 0.00 0.00 38.44 5.69
3850 3957 4.408821 GATGTGGGGTGCTGCCGA 62.409 66.667 0.00 0.00 38.44 5.54
3851 3958 4.415150 ATGTGGGGTGCTGCCGAG 62.415 66.667 0.00 0.00 38.44 4.63
3856 3963 4.554036 GGGTGCTGCCGAGGGATC 62.554 72.222 0.00 0.00 38.44 3.36
3857 3964 3.785859 GGTGCTGCCGAGGGATCA 61.786 66.667 0.00 0.00 0.00 2.92
3858 3965 2.512515 GTGCTGCCGAGGGATCAC 60.513 66.667 2.09 2.09 0.00 3.06
3859 3966 3.002583 TGCTGCCGAGGGATCACA 61.003 61.111 0.00 0.00 0.00 3.58
3860 3967 2.268920 GCTGCCGAGGGATCACAA 59.731 61.111 0.00 0.00 0.00 3.33
3861 3968 1.153086 GCTGCCGAGGGATCACAAT 60.153 57.895 0.00 0.00 0.00 2.71
3862 3969 0.106708 GCTGCCGAGGGATCACAATA 59.893 55.000 0.00 0.00 0.00 1.90
3863 3970 1.871080 CTGCCGAGGGATCACAATAC 58.129 55.000 0.00 0.00 0.00 1.89
3864 3971 0.468226 TGCCGAGGGATCACAATACC 59.532 55.000 0.00 0.00 35.89 2.73
3865 3972 0.468226 GCCGAGGGATCACAATACCA 59.532 55.000 0.00 0.00 38.53 3.25
3866 3973 1.134220 GCCGAGGGATCACAATACCAA 60.134 52.381 0.00 0.00 38.53 3.67
3867 3974 2.838736 CCGAGGGATCACAATACCAAG 58.161 52.381 0.00 0.00 38.53 3.61
3868 3975 2.434336 CCGAGGGATCACAATACCAAGA 59.566 50.000 0.00 0.00 38.53 3.02
3869 3976 3.458189 CGAGGGATCACAATACCAAGAC 58.542 50.000 0.00 0.00 38.53 3.01
3870 3977 3.133003 CGAGGGATCACAATACCAAGACT 59.867 47.826 0.00 0.00 38.53 3.24
3871 3978 4.698575 GAGGGATCACAATACCAAGACTC 58.301 47.826 0.00 0.00 38.53 3.36
3872 3979 4.366267 AGGGATCACAATACCAAGACTCT 58.634 43.478 0.00 0.00 38.53 3.24
3873 3980 4.163078 AGGGATCACAATACCAAGACTCTG 59.837 45.833 0.00 0.00 38.53 3.35
3874 3981 3.873952 GGATCACAATACCAAGACTCTGC 59.126 47.826 0.00 0.00 0.00 4.26
3875 3982 4.507710 GATCACAATACCAAGACTCTGCA 58.492 43.478 0.00 0.00 0.00 4.41
3876 3983 4.350368 TCACAATACCAAGACTCTGCAA 57.650 40.909 0.00 0.00 0.00 4.08
3877 3984 4.713553 TCACAATACCAAGACTCTGCAAA 58.286 39.130 0.00 0.00 0.00 3.68
3878 3985 4.515191 TCACAATACCAAGACTCTGCAAAC 59.485 41.667 0.00 0.00 0.00 2.93
3879 3986 4.275689 CACAATACCAAGACTCTGCAAACA 59.724 41.667 0.00 0.00 0.00 2.83
3880 3987 4.887071 ACAATACCAAGACTCTGCAAACAA 59.113 37.500 0.00 0.00 0.00 2.83
3881 3988 5.215160 CAATACCAAGACTCTGCAAACAAC 58.785 41.667 0.00 0.00 0.00 3.32
3882 3989 2.024414 ACCAAGACTCTGCAAACAACC 58.976 47.619 0.00 0.00 0.00 3.77
3883 3990 2.301346 CCAAGACTCTGCAAACAACCT 58.699 47.619 0.00 0.00 0.00 3.50
3884 3991 3.118038 ACCAAGACTCTGCAAACAACCTA 60.118 43.478 0.00 0.00 0.00 3.08
3885 3992 3.882888 CCAAGACTCTGCAAACAACCTAA 59.117 43.478 0.00 0.00 0.00 2.69
3886 3993 4.261197 CCAAGACTCTGCAAACAACCTAAC 60.261 45.833 0.00 0.00 0.00 2.34
3887 3994 3.131396 AGACTCTGCAAACAACCTAACG 58.869 45.455 0.00 0.00 0.00 3.18
3888 3995 1.602377 ACTCTGCAAACAACCTAACGC 59.398 47.619 0.00 0.00 0.00 4.84
3889 3996 1.601903 CTCTGCAAACAACCTAACGCA 59.398 47.619 0.00 0.00 0.00 5.24
3890 3997 1.332375 TCTGCAAACAACCTAACGCAC 59.668 47.619 0.00 0.00 0.00 5.34
3891 3998 0.382515 TGCAAACAACCTAACGCACC 59.617 50.000 0.00 0.00 0.00 5.01
3892 3999 0.659123 GCAAACAACCTAACGCACCG 60.659 55.000 0.00 0.00 0.00 4.94
3893 4000 0.659123 CAAACAACCTAACGCACCGC 60.659 55.000 0.00 0.00 0.00 5.68
3894 4001 1.096386 AAACAACCTAACGCACCGCA 61.096 50.000 0.00 0.00 0.00 5.69
3895 4002 1.778027 AACAACCTAACGCACCGCAC 61.778 55.000 0.00 0.00 0.00 5.34
3896 4003 2.667199 AACCTAACGCACCGCACC 60.667 61.111 0.00 0.00 0.00 5.01
3919 4026 4.814294 GCGTACCGAGCCCCACAG 62.814 72.222 0.00 0.00 0.00 3.66
3920 4027 4.814294 CGTACCGAGCCCCACAGC 62.814 72.222 0.00 0.00 0.00 4.40
3921 4028 3.702048 GTACCGAGCCCCACAGCA 61.702 66.667 0.00 0.00 34.23 4.41
3922 4029 3.702048 TACCGAGCCCCACAGCAC 61.702 66.667 0.00 0.00 34.23 4.40
3924 4031 4.641645 CCGAGCCCCACAGCACAA 62.642 66.667 0.00 0.00 34.23 3.33
3925 4032 3.357079 CGAGCCCCACAGCACAAC 61.357 66.667 0.00 0.00 34.23 3.32
3926 4033 2.203337 GAGCCCCACAGCACAACA 60.203 61.111 0.00 0.00 34.23 3.33
3927 4034 2.203394 AGCCCCACAGCACAACAG 60.203 61.111 0.00 0.00 34.23 3.16
3928 4035 2.203337 GCCCCACAGCACAACAGA 60.203 61.111 0.00 0.00 0.00 3.41
3929 4036 2.263741 GCCCCACAGCACAACAGAG 61.264 63.158 0.00 0.00 0.00 3.35
3930 4037 1.601759 CCCCACAGCACAACAGAGG 60.602 63.158 0.00 0.00 0.00 3.69
3931 4038 1.451504 CCCACAGCACAACAGAGGA 59.548 57.895 0.00 0.00 0.00 3.71
3932 4039 0.037303 CCCACAGCACAACAGAGGAT 59.963 55.000 0.00 0.00 0.00 3.24
3933 4040 1.446907 CCACAGCACAACAGAGGATC 58.553 55.000 0.00 0.00 0.00 3.36
3934 4041 1.271001 CCACAGCACAACAGAGGATCA 60.271 52.381 0.00 0.00 37.82 2.92
3935 4042 2.497138 CACAGCACAACAGAGGATCAA 58.503 47.619 0.00 0.00 37.82 2.57
3936 4043 2.225019 CACAGCACAACAGAGGATCAAC 59.775 50.000 0.00 0.00 37.82 3.18
3937 4044 1.808945 CAGCACAACAGAGGATCAACC 59.191 52.381 0.00 0.00 37.82 3.77
3938 4045 1.421268 AGCACAACAGAGGATCAACCA 59.579 47.619 0.00 0.00 42.04 3.67
3939 4046 1.537202 GCACAACAGAGGATCAACCAC 59.463 52.381 0.00 0.00 42.04 4.16
3940 4047 2.849942 CACAACAGAGGATCAACCACA 58.150 47.619 0.00 0.00 42.04 4.17
3941 4048 3.213506 CACAACAGAGGATCAACCACAA 58.786 45.455 0.00 0.00 42.04 3.33
3942 4049 3.822735 CACAACAGAGGATCAACCACAAT 59.177 43.478 0.00 0.00 42.04 2.71
3943 4050 4.074970 ACAACAGAGGATCAACCACAATC 58.925 43.478 0.00 0.00 42.04 2.67
3944 4051 4.074259 CAACAGAGGATCAACCACAATCA 58.926 43.478 0.00 0.00 42.04 2.57
3945 4052 4.371624 ACAGAGGATCAACCACAATCAA 57.628 40.909 0.00 0.00 42.04 2.57
3946 4053 4.927049 ACAGAGGATCAACCACAATCAAT 58.073 39.130 0.00 0.00 42.04 2.57
3947 4054 4.703575 ACAGAGGATCAACCACAATCAATG 59.296 41.667 0.00 0.00 42.04 2.82
3948 4055 4.945543 CAGAGGATCAACCACAATCAATGA 59.054 41.667 0.00 0.00 42.04 2.57
3949 4056 5.066117 CAGAGGATCAACCACAATCAATGAG 59.934 44.000 0.00 0.00 42.04 2.90
3950 4057 4.927049 AGGATCAACCACAATCAATGAGT 58.073 39.130 0.00 0.00 42.04 3.41
3951 4058 4.703575 AGGATCAACCACAATCAATGAGTG 59.296 41.667 9.29 9.29 42.04 3.51
3952 4059 3.921119 TCAACCACAATCAATGAGTGC 57.079 42.857 10.83 0.00 30.24 4.40
3953 4060 2.557924 TCAACCACAATCAATGAGTGCC 59.442 45.455 10.83 0.00 30.24 5.01
3954 4061 2.559668 CAACCACAATCAATGAGTGCCT 59.440 45.455 10.83 0.00 30.24 4.75
3955 4062 3.719268 ACCACAATCAATGAGTGCCTA 57.281 42.857 10.83 0.00 30.24 3.93
3956 4063 4.032960 ACCACAATCAATGAGTGCCTAA 57.967 40.909 10.83 0.00 30.24 2.69
3957 4064 3.758554 ACCACAATCAATGAGTGCCTAAC 59.241 43.478 10.83 0.00 30.24 2.34
3958 4065 4.012374 CCACAATCAATGAGTGCCTAACT 58.988 43.478 10.83 0.00 43.85 2.24
3959 4066 4.460382 CCACAATCAATGAGTGCCTAACTT 59.540 41.667 10.83 0.00 40.07 2.66
3960 4067 5.647658 CCACAATCAATGAGTGCCTAACTTA 59.352 40.000 10.83 0.00 40.07 2.24
3961 4068 6.150976 CCACAATCAATGAGTGCCTAACTTAA 59.849 38.462 10.83 0.00 40.07 1.85
3962 4069 7.023575 CACAATCAATGAGTGCCTAACTTAAC 58.976 38.462 10.83 0.00 40.07 2.01
3963 4070 6.714810 ACAATCAATGAGTGCCTAACTTAACA 59.285 34.615 10.83 0.00 40.07 2.41
3964 4071 6.743575 ATCAATGAGTGCCTAACTTAACAC 57.256 37.500 0.00 0.00 40.07 3.32
3965 4072 4.688879 TCAATGAGTGCCTAACTTAACACG 59.311 41.667 0.00 0.00 40.07 4.49
3966 4073 4.530710 ATGAGTGCCTAACTTAACACGA 57.469 40.909 0.00 0.00 40.07 4.35
3967 4074 4.325028 TGAGTGCCTAACTTAACACGAA 57.675 40.909 0.00 0.00 40.07 3.85
3968 4075 4.053295 TGAGTGCCTAACTTAACACGAAC 58.947 43.478 0.00 0.00 40.07 3.95
3969 4076 3.396560 AGTGCCTAACTTAACACGAACC 58.603 45.455 0.00 0.00 34.57 3.62
3970 4077 3.070590 AGTGCCTAACTTAACACGAACCT 59.929 43.478 0.00 0.00 34.57 3.50
3971 4078 3.811497 GTGCCTAACTTAACACGAACCTT 59.189 43.478 0.00 0.00 0.00 3.50
3972 4079 3.810941 TGCCTAACTTAACACGAACCTTG 59.189 43.478 0.00 0.00 0.00 3.61
3973 4080 4.060205 GCCTAACTTAACACGAACCTTGA 58.940 43.478 0.00 0.00 0.00 3.02
3974 4081 4.084171 GCCTAACTTAACACGAACCTTGAC 60.084 45.833 0.00 0.00 0.00 3.18
3975 4082 5.295152 CCTAACTTAACACGAACCTTGACT 58.705 41.667 0.00 0.00 0.00 3.41
3976 4083 6.449698 CCTAACTTAACACGAACCTTGACTA 58.550 40.000 0.00 0.00 0.00 2.59
3977 4084 6.585322 CCTAACTTAACACGAACCTTGACTAG 59.415 42.308 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 4.641989 GCAATTCCCTGATGAACATGTACT 59.358 41.667 0.00 0.00 0.00 2.73
295 296 2.508743 CGTGGACGTCGTTGCTTAA 58.491 52.632 9.92 0.00 34.11 1.85
606 607 2.658593 CGGGATGCCATCGTCGAC 60.659 66.667 5.18 5.18 0.00 4.20
665 666 2.433664 GGGCGTTCGACGGAATGT 60.434 61.111 8.96 0.00 42.82 2.71
666 667 3.192922 GGGGCGTTCGACGGAATG 61.193 66.667 8.96 0.00 42.82 2.67
864 873 1.536418 CACTCCCACTCCCACTCCA 60.536 63.158 0.00 0.00 0.00 3.86
914 923 3.479269 CCGCGAGCCGAAGTCAAC 61.479 66.667 8.23 0.00 40.02 3.18
1383 1410 4.105217 TGGAGCATGATTCATGATAACCCT 59.895 41.667 26.94 14.51 40.71 4.34
1413 1440 3.949754 TGAAGCATTGAAGCCTAATCCAG 59.050 43.478 0.00 0.00 34.23 3.86
1468 1495 2.312741 AGCCCCTTTTCATCCAAGATGA 59.687 45.455 3.17 3.17 0.00 2.92
1600 1634 1.301953 GCCGGTACCGAAACAAGGT 60.302 57.895 35.41 0.00 45.28 3.50
1601 1635 2.385091 CGCCGGTACCGAAACAAGG 61.385 63.158 35.41 17.36 42.83 3.61
1633 1667 1.959282 GATTTGAGTCCATGGGCATCC 59.041 52.381 20.74 7.79 0.00 3.51
1634 1668 2.941480 AGATTTGAGTCCATGGGCATC 58.059 47.619 20.74 12.59 0.00 3.91
1635 1669 3.028850 CAAGATTTGAGTCCATGGGCAT 58.971 45.455 20.74 2.23 0.00 4.40
1636 1670 2.449464 CAAGATTTGAGTCCATGGGCA 58.551 47.619 20.74 8.93 0.00 5.36
1637 1671 1.753073 CCAAGATTTGAGTCCATGGGC 59.247 52.381 8.79 8.79 0.00 5.36
1638 1672 1.753073 GCCAAGATTTGAGTCCATGGG 59.247 52.381 13.02 0.00 0.00 4.00
1639 1673 1.402968 CGCCAAGATTTGAGTCCATGG 59.597 52.381 4.97 4.97 0.00 3.66
1640 1674 1.402968 CCGCCAAGATTTGAGTCCATG 59.597 52.381 0.00 0.00 0.00 3.66
1641 1675 1.004745 ACCGCCAAGATTTGAGTCCAT 59.995 47.619 0.00 0.00 0.00 3.41
1642 1676 0.400213 ACCGCCAAGATTTGAGTCCA 59.600 50.000 0.00 0.00 0.00 4.02
1643 1677 1.200020 CAACCGCCAAGATTTGAGTCC 59.800 52.381 0.00 0.00 0.00 3.85
1644 1678 1.880027 ACAACCGCCAAGATTTGAGTC 59.120 47.619 0.00 0.00 0.00 3.36
1645 1679 1.608590 CACAACCGCCAAGATTTGAGT 59.391 47.619 0.00 0.00 0.00 3.41
1646 1680 1.666888 GCACAACCGCCAAGATTTGAG 60.667 52.381 0.00 0.00 0.00 3.02
1647 1681 0.313672 GCACAACCGCCAAGATTTGA 59.686 50.000 0.00 0.00 0.00 2.69
1648 1682 1.003262 CGCACAACCGCCAAGATTTG 61.003 55.000 0.00 0.00 0.00 2.32
1658 1692 3.558006 TCCAAATATACATCGCACAACCG 59.442 43.478 0.00 0.00 0.00 4.44
1666 1700 7.464830 AAACGAGTCTTCCAAATATACATCG 57.535 36.000 0.00 0.00 0.00 3.84
1709 1743 3.933048 ATGTGCAGGGTGAGCTGCC 62.933 63.158 0.00 0.00 45.17 4.85
1739 1773 5.148651 ACCTAACTACTGGCTACAACAAG 57.851 43.478 0.00 0.00 0.00 3.16
1954 2001 7.663905 ACAACTACTTGAAATACACTGGCAATA 59.336 33.333 0.00 0.00 0.00 1.90
2103 2167 1.603931 GCTGCCAACTTTTCCAGCTTC 60.604 52.381 4.38 0.00 45.32 3.86
2134 2198 1.464997 CAACCAAAGCTCTAACCTCGC 59.535 52.381 0.00 0.00 0.00 5.03
2158 2222 3.467803 AGGTGCAGTACTTTGTCAACTC 58.532 45.455 0.00 0.00 0.00 3.01
2159 2223 3.134804 AGAGGTGCAGTACTTTGTCAACT 59.865 43.478 0.00 0.00 0.00 3.16
2339 2406 4.600012 ATCATTGTTCGTTAAAGAGCGG 57.400 40.909 1.30 0.00 0.00 5.52
2345 2412 8.786826 AGGTTCTGATATCATTGTTCGTTAAA 57.213 30.769 5.72 0.00 0.00 1.52
2556 2657 3.139077 AGAAAGAAACGCTTGGGTAGTG 58.861 45.455 0.00 0.00 36.80 2.74
2686 2787 3.007940 TGAGATCCCAATATAGGCCAACG 59.992 47.826 5.01 0.00 0.00 4.10
2935 3036 0.676184 CGTCCTCGATCACCATCCAT 59.324 55.000 0.00 0.00 39.71 3.41
3035 3136 9.760660 CTCTTATCTTGTTTTCTCCATTTTACG 57.239 33.333 0.00 0.00 0.00 3.18
3066 3167 6.314648 TCAATCTCGATCTTGTTTTCTCCATG 59.685 38.462 6.91 0.00 0.00 3.66
3152 3253 1.004745 CAGCAAGAGAAGCCCCCTTTA 59.995 52.381 0.00 0.00 0.00 1.85
3291 3398 4.826556 AGTAGTTCTCTGCAAGGTCATTC 58.173 43.478 0.00 0.00 0.00 2.67
3309 3416 6.667558 ATTATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
3310 3417 6.384886 ACAATTATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3311 3418 5.191124 ACAATTATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3312 3419 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3313 3420 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3314 3421 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3315 3422 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3316 3423 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3317 3424 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3318 3425 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3333 3440 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
3342 3449 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
3343 3450 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
3344 3451 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
3345 3452 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
3346 3453 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3347 3454 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3348 3455 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3349 3456 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3350 3457 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3351 3458 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3352 3459 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3353 3460 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3354 3461 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3355 3462 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3356 3463 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3357 3464 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3358 3465 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3359 3466 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3360 3467 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3361 3468 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3362 3469 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3363 3470 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3364 3471 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3365 3472 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3366 3473 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3367 3474 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3368 3475 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
3369 3476 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
3370 3477 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
3377 3484 9.725019 ACATGTTTTAGAATGTAGATTCACTCA 57.275 29.630 14.46 6.83 40.59 3.41
3379 3486 9.950496 AGACATGTTTTAGAATGTAGATTCACT 57.050 29.630 14.46 0.00 40.59 3.41
3408 3515 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
3409 3516 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
3411 3518 7.765819 TCTCAAATGGACTACAACATACAGATG 59.234 37.037 0.00 0.00 39.16 2.90
3412 3519 7.851228 TCTCAAATGGACTACAACATACAGAT 58.149 34.615 0.00 0.00 0.00 2.90
3413 3520 7.239763 TCTCAAATGGACTACAACATACAGA 57.760 36.000 0.00 0.00 0.00 3.41
3414 3521 7.011763 CCATCTCAAATGGACTACAACATACAG 59.988 40.741 0.00 0.00 41.64 2.74
3415 3522 6.823182 CCATCTCAAATGGACTACAACATACA 59.177 38.462 0.00 0.00 41.64 2.29
3416 3523 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
3417 3524 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
3418 3525 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
3419 3526 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
3420 3527 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
3421 3528 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
3422 3529 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
3423 3530 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
3424 3531 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
3425 3532 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
3426 3533 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
3427 3534 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
3428 3535 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
3429 3536 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
3430 3537 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
3431 3538 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
3432 3539 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
3433 3540 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
3434 3541 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
3435 3542 7.286316 CCCAAATAATTGTCTTTCTAGCCATCT 59.714 37.037 0.00 0.00 34.60 2.90
3436 3543 7.285401 TCCCAAATAATTGTCTTTCTAGCCATC 59.715 37.037 0.00 0.00 34.60 3.51
3437 3544 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
3438 3545 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
3439 3546 7.258441 GTTCCCAAATAATTGTCTTTCTAGCC 58.742 38.462 0.00 0.00 34.60 3.93
3440 3547 6.967199 CGTTCCCAAATAATTGTCTTTCTAGC 59.033 38.462 0.00 0.00 34.60 3.42
3441 3548 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
3442 3549 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
3443 3550 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
3444 3551 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
3445 3552 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
3446 3553 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
3447 3554 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
3448 3555 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
3449 3556 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
3450 3557 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
3451 3558 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
3452 3559 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
3453 3560 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3454 3561 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3455 3562 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
3456 3563 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
3457 3564 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
3458 3565 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
3459 3566 1.790818 ATTCTACTCCCTCCGTTCCC 58.209 55.000 0.00 0.00 0.00 3.97
3460 3567 3.294214 TGTATTCTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3461 3568 4.796618 GCATGTATTCTACTCCCTCCGTTC 60.797 50.000 0.00 0.00 0.00 3.95
3462 3569 3.069729 GCATGTATTCTACTCCCTCCGTT 59.930 47.826 0.00 0.00 0.00 4.44
3463 3570 2.628657 GCATGTATTCTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
3464 3571 2.894126 AGCATGTATTCTACTCCCTCCG 59.106 50.000 0.00 0.00 0.00 4.63
3465 3572 3.007398 CCAGCATGTATTCTACTCCCTCC 59.993 52.174 0.00 0.00 0.00 4.30
3466 3573 3.007398 CCCAGCATGTATTCTACTCCCTC 59.993 52.174 0.00 0.00 0.00 4.30
3467 3574 2.975489 CCCAGCATGTATTCTACTCCCT 59.025 50.000 0.00 0.00 0.00 4.20
3468 3575 2.706190 ACCCAGCATGTATTCTACTCCC 59.294 50.000 0.00 0.00 0.00 4.30
3469 3576 3.733337 CACCCAGCATGTATTCTACTCC 58.267 50.000 0.00 0.00 0.00 3.85
3470 3577 3.134458 GCACCCAGCATGTATTCTACTC 58.866 50.000 0.00 0.00 44.79 2.59
3471 3578 3.199880 GCACCCAGCATGTATTCTACT 57.800 47.619 0.00 0.00 44.79 2.57
3498 3605 2.040545 TGGACACCACGGAATAATTGGT 59.959 45.455 0.00 0.00 44.83 3.67
3524 3631 4.569943 TCCATCTGTGCAACTAGTTCTTC 58.430 43.478 4.77 0.00 38.04 2.87
3525 3632 4.623932 TCCATCTGTGCAACTAGTTCTT 57.376 40.909 4.77 0.00 38.04 2.52
3526 3633 4.833478 ATCCATCTGTGCAACTAGTTCT 57.167 40.909 4.77 0.00 38.04 3.01
3563 3670 1.102222 CCCCGGTGACCGTTCAAAAA 61.102 55.000 23.73 0.00 46.80 1.94
3564 3671 1.526455 CCCCGGTGACCGTTCAAAA 60.526 57.895 23.73 0.00 46.80 2.44
3565 3672 2.111460 CCCCGGTGACCGTTCAAA 59.889 61.111 23.73 0.00 46.80 2.69
3566 3673 3.943691 CCCCCGGTGACCGTTCAA 61.944 66.667 23.73 0.00 46.80 2.69
3584 3691 0.326618 TTCAGGTGGGGATCCTCTCC 60.327 60.000 23.14 23.14 44.11 3.71
3585 3692 1.813102 ATTCAGGTGGGGATCCTCTC 58.187 55.000 14.22 9.47 32.37 3.20
3586 3693 3.663298 ATATTCAGGTGGGGATCCTCT 57.337 47.619 14.22 2.52 32.37 3.69
3587 3694 5.749462 CAATATATTCAGGTGGGGATCCTC 58.251 45.833 12.58 8.60 32.37 3.71
3588 3695 4.018050 GCAATATATTCAGGTGGGGATCCT 60.018 45.833 12.58 0.00 35.45 3.24
3589 3696 4.018050 AGCAATATATTCAGGTGGGGATCC 60.018 45.833 1.92 1.92 0.00 3.36
3590 3697 5.184892 AGCAATATATTCAGGTGGGGATC 57.815 43.478 0.00 0.00 0.00 3.36
3591 3698 4.603171 TGAGCAATATATTCAGGTGGGGAT 59.397 41.667 0.00 0.00 0.00 3.85
3592 3699 3.980022 TGAGCAATATATTCAGGTGGGGA 59.020 43.478 0.00 0.00 0.00 4.81
3593 3700 4.371624 TGAGCAATATATTCAGGTGGGG 57.628 45.455 0.00 0.00 0.00 4.96
3594 3701 6.713762 TTTTGAGCAATATATTCAGGTGGG 57.286 37.500 0.00 0.00 0.00 4.61
3620 3727 0.595095 GTGACTCTTGGCTTTGGCAG 59.405 55.000 0.00 0.00 39.75 4.85
3621 3728 0.823356 GGTGACTCTTGGCTTTGGCA 60.823 55.000 0.00 0.00 40.87 4.92
3622 3729 1.527433 GGGTGACTCTTGGCTTTGGC 61.527 60.000 0.00 0.00 37.82 4.52
3623 3730 0.895559 GGGGTGACTCTTGGCTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
3624 3731 0.111253 AGGGGTGACTCTTGGCTTTG 59.889 55.000 0.00 0.00 38.96 2.77
3625 3732 2.556849 AGGGGTGACTCTTGGCTTT 58.443 52.632 0.00 0.00 38.96 3.51
3626 3733 4.339335 AGGGGTGACTCTTGGCTT 57.661 55.556 0.00 0.00 38.96 4.35
3633 3740 2.160205 GCCAAAGTTAAGGGGTGACTC 58.840 52.381 0.00 0.00 0.00 3.36
3634 3741 1.780919 AGCCAAAGTTAAGGGGTGACT 59.219 47.619 0.00 0.00 0.00 3.41
3635 3742 2.287977 AGCCAAAGTTAAGGGGTGAC 57.712 50.000 0.00 0.00 0.00 3.67
3637 3744 6.880934 TGGATCAGCCAAAGTTAAGGGGTG 62.881 50.000 11.91 11.91 45.87 4.61
3638 3745 2.291605 GGATCAGCCAAAGTTAAGGGGT 60.292 50.000 0.00 0.00 36.34 4.95
3639 3746 2.291540 TGGATCAGCCAAAGTTAAGGGG 60.292 50.000 0.00 0.00 45.87 4.79
3640 3747 3.085952 TGGATCAGCCAAAGTTAAGGG 57.914 47.619 0.00 0.00 45.87 3.95
3650 3757 5.708736 TTCCTTATAAACTGGATCAGCCA 57.291 39.130 0.00 0.00 46.96 4.75
3651 3758 6.183360 GGTTTTCCTTATAAACTGGATCAGCC 60.183 42.308 0.00 0.00 36.12 4.85
3652 3759 6.458342 CGGTTTTCCTTATAAACTGGATCAGC 60.458 42.308 0.00 0.00 37.92 4.26
3653 3760 7.016361 CGGTTTTCCTTATAAACTGGATCAG 57.984 40.000 0.00 0.00 37.92 2.90
3654 3761 6.995511 CGGTTTTCCTTATAAACTGGATCA 57.004 37.500 0.00 0.00 37.92 2.92
3659 3766 5.813672 TCGATCCGGTTTTCCTTATAAACTG 59.186 40.000 0.00 0.00 40.12 3.16
3660 3767 5.981174 TCGATCCGGTTTTCCTTATAAACT 58.019 37.500 0.00 0.00 36.12 2.66
3661 3768 6.667007 TTCGATCCGGTTTTCCTTATAAAC 57.333 37.500 0.00 0.00 37.95 2.01
3662 3769 7.684937 TTTTCGATCCGGTTTTCCTTATAAA 57.315 32.000 0.00 0.00 37.95 1.40
3663 3770 7.868906 ATTTTCGATCCGGTTTTCCTTATAA 57.131 32.000 0.00 0.00 37.95 0.98
3664 3771 7.868906 AATTTTCGATCCGGTTTTCCTTATA 57.131 32.000 0.00 0.00 37.95 0.98
3665 3772 6.769134 AATTTTCGATCCGGTTTTCCTTAT 57.231 33.333 0.00 0.00 37.95 1.73
3666 3773 7.684937 TTAATTTTCGATCCGGTTTTCCTTA 57.315 32.000 0.00 0.00 37.95 2.69
3667 3774 6.578163 TTAATTTTCGATCCGGTTTTCCTT 57.422 33.333 0.00 0.00 37.95 3.36
3668 3775 6.016108 TGTTTAATTTTCGATCCGGTTTTCCT 60.016 34.615 0.00 0.00 37.95 3.36
3669 3776 6.151004 TGTTTAATTTTCGATCCGGTTTTCC 58.849 36.000 0.00 0.00 0.00 3.13
3670 3777 7.380333 ACTTGTTTAATTTTCGATCCGGTTTTC 59.620 33.333 0.00 0.00 0.00 2.29
3671 3778 7.204604 ACTTGTTTAATTTTCGATCCGGTTTT 58.795 30.769 0.00 0.00 0.00 2.43
3672 3779 6.741109 ACTTGTTTAATTTTCGATCCGGTTT 58.259 32.000 0.00 0.00 0.00 3.27
3673 3780 6.321848 ACTTGTTTAATTTTCGATCCGGTT 57.678 33.333 0.00 0.00 0.00 4.44
3674 3781 5.952526 ACTTGTTTAATTTTCGATCCGGT 57.047 34.783 0.00 0.00 0.00 5.28
3675 3782 6.304683 GTCAACTTGTTTAATTTTCGATCCGG 59.695 38.462 0.00 0.00 0.00 5.14
3676 3783 6.304683 GGTCAACTTGTTTAATTTTCGATCCG 59.695 38.462 0.00 0.00 0.00 4.18
3677 3784 6.584942 GGGTCAACTTGTTTAATTTTCGATCC 59.415 38.462 0.00 0.00 0.00 3.36
3678 3785 6.584942 GGGGTCAACTTGTTTAATTTTCGATC 59.415 38.462 0.00 0.00 0.00 3.69
3679 3786 6.452242 GGGGTCAACTTGTTTAATTTTCGAT 58.548 36.000 0.00 0.00 0.00 3.59
3680 3787 5.505985 CGGGGTCAACTTGTTTAATTTTCGA 60.506 40.000 0.00 0.00 0.00 3.71
3681 3788 4.677832 CGGGGTCAACTTGTTTAATTTTCG 59.322 41.667 0.00 0.00 0.00 3.46
3682 3789 5.593968 ACGGGGTCAACTTGTTTAATTTTC 58.406 37.500 0.00 0.00 0.00 2.29
3683 3790 5.601583 ACGGGGTCAACTTGTTTAATTTT 57.398 34.783 0.00 0.00 0.00 1.82
3684 3791 5.601583 AACGGGGTCAACTTGTTTAATTT 57.398 34.783 0.00 0.00 0.00 1.82
3685 3792 5.601583 AAACGGGGTCAACTTGTTTAATT 57.398 34.783 0.00 0.00 31.49 1.40
3686 3793 6.490721 TCATAAACGGGGTCAACTTGTTTAAT 59.509 34.615 0.67 0.00 38.18 1.40
3687 3794 5.826737 TCATAAACGGGGTCAACTTGTTTAA 59.173 36.000 0.67 0.00 38.18 1.52
3688 3795 5.374921 TCATAAACGGGGTCAACTTGTTTA 58.625 37.500 0.00 0.00 38.79 2.01
3689 3796 4.208746 TCATAAACGGGGTCAACTTGTTT 58.791 39.130 0.00 0.00 36.74 2.83
3690 3797 3.818773 CTCATAAACGGGGTCAACTTGTT 59.181 43.478 0.00 0.00 0.00 2.83
3691 3798 3.408634 CTCATAAACGGGGTCAACTTGT 58.591 45.455 0.00 0.00 0.00 3.16
3692 3799 2.747446 CCTCATAAACGGGGTCAACTTG 59.253 50.000 0.00 0.00 0.00 3.16
3693 3800 2.290705 CCCTCATAAACGGGGTCAACTT 60.291 50.000 0.00 0.00 36.78 2.66
3694 3801 1.280998 CCCTCATAAACGGGGTCAACT 59.719 52.381 0.00 0.00 36.78 3.16
3695 3802 1.279846 TCCCTCATAAACGGGGTCAAC 59.720 52.381 0.00 0.00 40.99 3.18
3696 3803 1.659022 TCCCTCATAAACGGGGTCAA 58.341 50.000 0.00 0.00 40.99 3.18
3697 3804 1.659022 TTCCCTCATAAACGGGGTCA 58.341 50.000 0.00 0.00 40.99 4.02
3698 3805 2.362736 GTTTCCCTCATAAACGGGGTC 58.637 52.381 0.00 0.00 40.99 4.46
3699 3806 1.005097 GGTTTCCCTCATAAACGGGGT 59.995 52.381 0.00 0.00 40.99 4.95
3700 3807 1.758936 GGTTTCCCTCATAAACGGGG 58.241 55.000 0.00 0.00 40.99 5.73
3701 3808 1.375551 CGGTTTCCCTCATAAACGGG 58.624 55.000 0.00 0.00 42.05 5.28
3702 3809 1.375551 CCGGTTTCCCTCATAAACGG 58.624 55.000 0.00 0.00 37.64 4.44
3703 3810 1.375551 CCCGGTTTCCCTCATAAACG 58.624 55.000 0.00 0.00 37.64 3.60
3704 3811 1.100510 GCCCGGTTTCCCTCATAAAC 58.899 55.000 0.00 0.00 36.34 2.01
3705 3812 0.033894 GGCCCGGTTTCCCTCATAAA 60.034 55.000 0.00 0.00 0.00 1.40
3706 3813 1.610873 GGCCCGGTTTCCCTCATAA 59.389 57.895 0.00 0.00 0.00 1.90
3707 3814 2.737881 CGGCCCGGTTTCCCTCATA 61.738 63.158 0.00 0.00 0.00 2.15
3708 3815 4.109675 CGGCCCGGTTTCCCTCAT 62.110 66.667 0.00 0.00 0.00 2.90
3710 3817 3.556298 TTTCGGCCCGGTTTCCCTC 62.556 63.158 1.90 0.00 0.00 4.30
3711 3818 2.643788 TTTTTCGGCCCGGTTTCCCT 62.644 55.000 1.90 0.00 0.00 4.20
3712 3819 2.201708 TTTTTCGGCCCGGTTTCCC 61.202 57.895 1.90 0.00 0.00 3.97
3713 3820 1.007038 GTTTTTCGGCCCGGTTTCC 60.007 57.895 1.90 0.00 0.00 3.13
3714 3821 1.007038 GGTTTTTCGGCCCGGTTTC 60.007 57.895 1.90 0.00 0.00 2.78
3715 3822 2.847754 CGGTTTTTCGGCCCGGTTT 61.848 57.895 1.90 0.00 38.09 3.27
3716 3823 3.289062 CGGTTTTTCGGCCCGGTT 61.289 61.111 1.90 0.00 38.09 4.44
3719 3826 4.693525 GTGCGGTTTTTCGGCCCG 62.694 66.667 0.00 0.00 44.46 6.13
3720 3827 3.551887 CTGTGCGGTTTTTCGGCCC 62.552 63.158 0.00 0.00 40.87 5.80
3721 3828 1.862602 ATCTGTGCGGTTTTTCGGCC 61.863 55.000 0.00 0.00 40.87 6.13
3722 3829 0.800012 TATCTGTGCGGTTTTTCGGC 59.200 50.000 0.00 0.00 41.74 5.54
3723 3830 2.224549 TGTTATCTGTGCGGTTTTTCGG 59.775 45.455 0.00 0.00 0.00 4.30
3724 3831 3.529634 TGTTATCTGTGCGGTTTTTCG 57.470 42.857 0.00 0.00 0.00 3.46
3725 3832 4.226761 CCTTGTTATCTGTGCGGTTTTTC 58.773 43.478 0.00 0.00 0.00 2.29
3726 3833 3.634910 ACCTTGTTATCTGTGCGGTTTTT 59.365 39.130 0.00 0.00 0.00 1.94
3727 3834 3.219281 ACCTTGTTATCTGTGCGGTTTT 58.781 40.909 0.00 0.00 0.00 2.43
3728 3835 2.858745 ACCTTGTTATCTGTGCGGTTT 58.141 42.857 0.00 0.00 0.00 3.27
3729 3836 2.561478 ACCTTGTTATCTGTGCGGTT 57.439 45.000 0.00 0.00 0.00 4.44
3730 3837 2.561478 AACCTTGTTATCTGTGCGGT 57.439 45.000 0.00 0.00 0.00 5.68
3731 3838 3.331150 TGTAACCTTGTTATCTGTGCGG 58.669 45.455 0.00 0.00 0.00 5.69
3732 3839 5.351233 TTTGTAACCTTGTTATCTGTGCG 57.649 39.130 0.00 0.00 0.00 5.34
3733 3840 6.966021 TCTTTTGTAACCTTGTTATCTGTGC 58.034 36.000 0.00 0.00 0.00 4.57
3734 3841 8.783093 TCATCTTTTGTAACCTTGTTATCTGTG 58.217 33.333 0.00 0.00 0.00 3.66
3735 3842 8.918202 TCATCTTTTGTAACCTTGTTATCTGT 57.082 30.769 0.00 0.00 0.00 3.41
3736 3843 9.219603 TCTCATCTTTTGTAACCTTGTTATCTG 57.780 33.333 0.00 0.00 0.00 2.90
3737 3844 9.793259 TTCTCATCTTTTGTAACCTTGTTATCT 57.207 29.630 0.00 0.00 0.00 1.98
3763 3870 2.250924 CTTCTCCTGGGTGGCATTTTT 58.749 47.619 0.00 0.00 35.26 1.94
3764 3871 1.550869 CCTTCTCCTGGGTGGCATTTT 60.551 52.381 0.00 0.00 35.26 1.82
3765 3872 0.040204 CCTTCTCCTGGGTGGCATTT 59.960 55.000 0.00 0.00 35.26 2.32
3766 3873 1.693640 CCTTCTCCTGGGTGGCATT 59.306 57.895 0.00 0.00 35.26 3.56
3767 3874 2.988839 GCCTTCTCCTGGGTGGCAT 61.989 63.158 12.66 0.00 42.79 4.40
3768 3875 3.650950 GCCTTCTCCTGGGTGGCA 61.651 66.667 12.66 0.00 42.79 4.92
3769 3876 2.988839 ATGCCTTCTCCTGGGTGGC 61.989 63.158 11.29 11.29 43.49 5.01
3770 3877 1.077212 CATGCCTTCTCCTGGGTGG 60.077 63.158 0.00 0.00 37.10 4.61
3771 3878 0.393537 GTCATGCCTTCTCCTGGGTG 60.394 60.000 0.00 0.00 0.00 4.61
3772 3879 1.566298 GGTCATGCCTTCTCCTGGGT 61.566 60.000 0.00 0.00 0.00 4.51
3773 3880 1.225704 GGTCATGCCTTCTCCTGGG 59.774 63.158 0.00 0.00 0.00 4.45
3774 3881 4.972875 GGTCATGCCTTCTCCTGG 57.027 61.111 0.00 0.00 0.00 4.45
3783 3890 2.565841 CCTGTTTAGCTAGGTCATGCC 58.434 52.381 0.00 0.00 37.58 4.40
3784 3891 1.943340 GCCTGTTTAGCTAGGTCATGC 59.057 52.381 0.00 0.00 36.44 4.06
3785 3892 3.118629 TCTGCCTGTTTAGCTAGGTCATG 60.119 47.826 0.00 0.00 36.44 3.07
3786 3893 3.107601 TCTGCCTGTTTAGCTAGGTCAT 58.892 45.455 0.00 0.00 36.44 3.06
3787 3894 2.536066 TCTGCCTGTTTAGCTAGGTCA 58.464 47.619 0.00 0.83 36.44 4.02
3788 3895 3.611766 TTCTGCCTGTTTAGCTAGGTC 57.388 47.619 0.00 0.00 36.44 3.85
3789 3896 3.583086 TCTTTCTGCCTGTTTAGCTAGGT 59.417 43.478 0.00 0.00 36.44 3.08
3790 3897 3.935828 GTCTTTCTGCCTGTTTAGCTAGG 59.064 47.826 0.00 0.00 37.14 3.02
3791 3898 3.935828 GGTCTTTCTGCCTGTTTAGCTAG 59.064 47.826 0.00 0.00 0.00 3.42
3792 3899 3.326588 TGGTCTTTCTGCCTGTTTAGCTA 59.673 43.478 0.00 0.00 0.00 3.32
3793 3900 2.106511 TGGTCTTTCTGCCTGTTTAGCT 59.893 45.455 0.00 0.00 0.00 3.32
3794 3901 2.226674 GTGGTCTTTCTGCCTGTTTAGC 59.773 50.000 0.00 0.00 0.00 3.09
3795 3902 2.814336 GGTGGTCTTTCTGCCTGTTTAG 59.186 50.000 0.00 0.00 0.00 1.85
3796 3903 2.173782 TGGTGGTCTTTCTGCCTGTTTA 59.826 45.455 0.00 0.00 0.00 2.01
3797 3904 1.064017 TGGTGGTCTTTCTGCCTGTTT 60.064 47.619 0.00 0.00 0.00 2.83
3798 3905 0.550914 TGGTGGTCTTTCTGCCTGTT 59.449 50.000 0.00 0.00 0.00 3.16
3799 3906 0.179018 GTGGTGGTCTTTCTGCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
3800 3907 1.230635 CGTGGTGGTCTTTCTGCCTG 61.231 60.000 0.00 0.00 0.00 4.85
3801 3908 1.071471 CGTGGTGGTCTTTCTGCCT 59.929 57.895 0.00 0.00 0.00 4.75
3802 3909 0.951040 CTCGTGGTGGTCTTTCTGCC 60.951 60.000 0.00 0.00 0.00 4.85
3803 3910 0.033504 TCTCGTGGTGGTCTTTCTGC 59.966 55.000 0.00 0.00 0.00 4.26
3804 3911 1.613925 TCTCTCGTGGTGGTCTTTCTG 59.386 52.381 0.00 0.00 0.00 3.02
3805 3912 1.614413 GTCTCTCGTGGTGGTCTTTCT 59.386 52.381 0.00 0.00 0.00 2.52
3806 3913 1.340248 TGTCTCTCGTGGTGGTCTTTC 59.660 52.381 0.00 0.00 0.00 2.62
3807 3914 1.068741 GTGTCTCTCGTGGTGGTCTTT 59.931 52.381 0.00 0.00 0.00 2.52
3808 3915 0.674534 GTGTCTCTCGTGGTGGTCTT 59.325 55.000 0.00 0.00 0.00 3.01
3809 3916 0.467474 TGTGTCTCTCGTGGTGGTCT 60.467 55.000 0.00 0.00 0.00 3.85
3810 3917 0.387929 TTGTGTCTCTCGTGGTGGTC 59.612 55.000 0.00 0.00 0.00 4.02
3811 3918 0.389391 CTTGTGTCTCTCGTGGTGGT 59.611 55.000 0.00 0.00 0.00 4.16
3812 3919 0.389391 ACTTGTGTCTCTCGTGGTGG 59.611 55.000 0.00 0.00 0.00 4.61
3813 3920 2.552743 TCTACTTGTGTCTCTCGTGGTG 59.447 50.000 0.00 0.00 0.00 4.17
3814 3921 2.860009 TCTACTTGTGTCTCTCGTGGT 58.140 47.619 0.00 0.00 0.00 4.16
3815 3922 3.191581 ACATCTACTTGTGTCTCTCGTGG 59.808 47.826 0.00 0.00 0.00 4.94
3816 3923 4.162072 CACATCTACTTGTGTCTCTCGTG 58.838 47.826 0.00 0.00 41.65 4.35
3817 3924 3.191581 CCACATCTACTTGTGTCTCTCGT 59.808 47.826 4.12 0.00 44.42 4.18
3818 3925 3.428180 CCCACATCTACTTGTGTCTCTCG 60.428 52.174 4.12 0.00 44.42 4.04
3819 3926 3.118956 CCCCACATCTACTTGTGTCTCTC 60.119 52.174 4.12 0.00 44.42 3.20
3820 3927 2.834549 CCCCACATCTACTTGTGTCTCT 59.165 50.000 4.12 0.00 44.42 3.10
3821 3928 2.567615 ACCCCACATCTACTTGTGTCTC 59.432 50.000 4.12 0.00 44.42 3.36
3822 3929 2.303022 CACCCCACATCTACTTGTGTCT 59.697 50.000 4.12 0.00 44.42 3.41
3823 3930 2.699954 CACCCCACATCTACTTGTGTC 58.300 52.381 4.12 0.00 44.42 3.67
3824 3931 1.271379 GCACCCCACATCTACTTGTGT 60.271 52.381 4.12 0.00 44.42 3.72
3825 3932 1.003580 AGCACCCCACATCTACTTGTG 59.996 52.381 0.00 0.00 45.28 3.33
3826 3933 1.003580 CAGCACCCCACATCTACTTGT 59.996 52.381 0.00 0.00 0.00 3.16
3827 3934 1.742761 CAGCACCCCACATCTACTTG 58.257 55.000 0.00 0.00 0.00 3.16
3828 3935 0.035056 GCAGCACCCCACATCTACTT 60.035 55.000 0.00 0.00 0.00 2.24
3829 3936 1.604378 GCAGCACCCCACATCTACT 59.396 57.895 0.00 0.00 0.00 2.57
3830 3937 1.452108 GGCAGCACCCCACATCTAC 60.452 63.158 0.00 0.00 0.00 2.59
3831 3938 2.998097 GGCAGCACCCCACATCTA 59.002 61.111 0.00 0.00 0.00 1.98
3832 3939 4.415150 CGGCAGCACCCCACATCT 62.415 66.667 0.00 0.00 33.26 2.90
3833 3940 4.408821 TCGGCAGCACCCCACATC 62.409 66.667 0.00 0.00 33.26 3.06
3834 3941 4.415150 CTCGGCAGCACCCCACAT 62.415 66.667 0.00 0.00 33.26 3.21
3839 3946 4.554036 GATCCCTCGGCAGCACCC 62.554 72.222 0.00 0.00 33.26 4.61
3840 3947 3.785859 TGATCCCTCGGCAGCACC 61.786 66.667 0.00 0.00 0.00 5.01
3841 3948 2.512515 GTGATCCCTCGGCAGCAC 60.513 66.667 0.00 0.00 0.00 4.40
3842 3949 1.913951 ATTGTGATCCCTCGGCAGCA 61.914 55.000 0.00 0.00 0.00 4.41
3843 3950 0.106708 TATTGTGATCCCTCGGCAGC 59.893 55.000 0.00 0.00 0.00 5.25
3844 3951 1.541233 GGTATTGTGATCCCTCGGCAG 60.541 57.143 0.00 0.00 0.00 4.85
3845 3952 0.468226 GGTATTGTGATCCCTCGGCA 59.532 55.000 0.00 0.00 0.00 5.69
3846 3953 0.468226 TGGTATTGTGATCCCTCGGC 59.532 55.000 0.00 0.00 0.00 5.54
3847 3954 2.434336 TCTTGGTATTGTGATCCCTCGG 59.566 50.000 0.00 0.00 0.00 4.63
3848 3955 3.133003 AGTCTTGGTATTGTGATCCCTCG 59.867 47.826 0.00 0.00 0.00 4.63
3849 3956 4.407296 AGAGTCTTGGTATTGTGATCCCTC 59.593 45.833 0.00 0.00 0.00 4.30
3850 3957 4.163078 CAGAGTCTTGGTATTGTGATCCCT 59.837 45.833 0.00 0.00 0.00 4.20
3851 3958 4.446371 CAGAGTCTTGGTATTGTGATCCC 58.554 47.826 0.00 0.00 0.00 3.85
3852 3959 3.873952 GCAGAGTCTTGGTATTGTGATCC 59.126 47.826 0.00 0.00 0.00 3.36
3853 3960 4.507710 TGCAGAGTCTTGGTATTGTGATC 58.492 43.478 0.00 0.00 0.00 2.92
3854 3961 4.558226 TGCAGAGTCTTGGTATTGTGAT 57.442 40.909 0.00 0.00 0.00 3.06
3855 3962 4.350368 TTGCAGAGTCTTGGTATTGTGA 57.650 40.909 0.00 0.00 0.00 3.58
3856 3963 4.275689 TGTTTGCAGAGTCTTGGTATTGTG 59.724 41.667 0.00 0.00 0.00 3.33
3857 3964 4.460263 TGTTTGCAGAGTCTTGGTATTGT 58.540 39.130 0.00 0.00 0.00 2.71
3858 3965 5.215160 GTTGTTTGCAGAGTCTTGGTATTG 58.785 41.667 0.00 0.00 0.00 1.90
3859 3966 4.278419 GGTTGTTTGCAGAGTCTTGGTATT 59.722 41.667 0.00 0.00 0.00 1.89
3860 3967 3.821033 GGTTGTTTGCAGAGTCTTGGTAT 59.179 43.478 0.00 0.00 0.00 2.73
3861 3968 3.118038 AGGTTGTTTGCAGAGTCTTGGTA 60.118 43.478 0.00 0.00 0.00 3.25
3862 3969 2.024414 GGTTGTTTGCAGAGTCTTGGT 58.976 47.619 0.00 0.00 0.00 3.67
3863 3970 2.301346 AGGTTGTTTGCAGAGTCTTGG 58.699 47.619 0.00 0.00 0.00 3.61
3864 3971 4.552767 CGTTAGGTTGTTTGCAGAGTCTTG 60.553 45.833 0.00 0.00 0.00 3.02
3865 3972 3.560068 CGTTAGGTTGTTTGCAGAGTCTT 59.440 43.478 0.00 0.00 0.00 3.01
3866 3973 3.131396 CGTTAGGTTGTTTGCAGAGTCT 58.869 45.455 0.00 0.00 0.00 3.24
3867 3974 2.349532 GCGTTAGGTTGTTTGCAGAGTC 60.350 50.000 0.00 0.00 0.00 3.36
3868 3975 1.602377 GCGTTAGGTTGTTTGCAGAGT 59.398 47.619 0.00 0.00 0.00 3.24
3869 3976 1.601903 TGCGTTAGGTTGTTTGCAGAG 59.398 47.619 0.00 0.00 0.00 3.35
3870 3977 1.332375 GTGCGTTAGGTTGTTTGCAGA 59.668 47.619 0.00 0.00 32.30 4.26
3871 3978 1.599419 GGTGCGTTAGGTTGTTTGCAG 60.599 52.381 0.00 0.00 32.30 4.41
3872 3979 0.382515 GGTGCGTTAGGTTGTTTGCA 59.617 50.000 0.00 0.00 0.00 4.08
3873 3980 0.659123 CGGTGCGTTAGGTTGTTTGC 60.659 55.000 0.00 0.00 0.00 3.68
3874 3981 0.659123 GCGGTGCGTTAGGTTGTTTG 60.659 55.000 0.00 0.00 0.00 2.93
3875 3982 1.096386 TGCGGTGCGTTAGGTTGTTT 61.096 50.000 0.00 0.00 0.00 2.83
3876 3983 1.524165 TGCGGTGCGTTAGGTTGTT 60.524 52.632 0.00 0.00 0.00 2.83
3877 3984 2.109387 TGCGGTGCGTTAGGTTGT 59.891 55.556 0.00 0.00 0.00 3.32
3878 3985 2.554272 GTGCGGTGCGTTAGGTTG 59.446 61.111 0.00 0.00 0.00 3.77
3879 3986 2.667199 GGTGCGGTGCGTTAGGTT 60.667 61.111 0.00 0.00 0.00 3.50
3904 4011 3.702048 TGCTGTGGGGCTCGGTAC 61.702 66.667 0.00 0.00 0.00 3.34
3905 4012 3.702048 GTGCTGTGGGGCTCGGTA 61.702 66.667 0.00 0.00 0.00 4.02
3907 4014 4.641645 TTGTGCTGTGGGGCTCGG 62.642 66.667 0.00 0.00 0.00 4.63
3908 4015 3.357079 GTTGTGCTGTGGGGCTCG 61.357 66.667 0.00 0.00 0.00 5.03
3909 4016 2.203337 TGTTGTGCTGTGGGGCTC 60.203 61.111 0.00 0.00 0.00 4.70
3910 4017 2.203394 CTGTTGTGCTGTGGGGCT 60.203 61.111 0.00 0.00 0.00 5.19
3911 4018 2.203337 TCTGTTGTGCTGTGGGGC 60.203 61.111 0.00 0.00 0.00 5.80
3912 4019 1.601759 CCTCTGTTGTGCTGTGGGG 60.602 63.158 0.00 0.00 0.00 4.96
3913 4020 0.037303 ATCCTCTGTTGTGCTGTGGG 59.963 55.000 0.00 0.00 32.66 4.61
3914 4021 1.271001 TGATCCTCTGTTGTGCTGTGG 60.271 52.381 0.00 0.00 0.00 4.17
3915 4022 2.174363 TGATCCTCTGTTGTGCTGTG 57.826 50.000 0.00 0.00 0.00 3.66
3916 4023 2.498167 GTTGATCCTCTGTTGTGCTGT 58.502 47.619 0.00 0.00 0.00 4.40
3917 4024 1.808945 GGTTGATCCTCTGTTGTGCTG 59.191 52.381 0.00 0.00 0.00 4.41
3918 4025 1.421268 TGGTTGATCCTCTGTTGTGCT 59.579 47.619 0.00 0.00 37.07 4.40
3919 4026 1.537202 GTGGTTGATCCTCTGTTGTGC 59.463 52.381 0.00 0.00 37.07 4.57
3920 4027 2.849942 TGTGGTTGATCCTCTGTTGTG 58.150 47.619 0.00 0.00 37.07 3.33
3921 4028 3.576078 TTGTGGTTGATCCTCTGTTGT 57.424 42.857 0.00 0.00 37.07 3.32
3922 4029 4.074259 TGATTGTGGTTGATCCTCTGTTG 58.926 43.478 0.00 0.00 37.07 3.33
3923 4030 4.371624 TGATTGTGGTTGATCCTCTGTT 57.628 40.909 0.00 0.00 37.07 3.16
3924 4031 4.371624 TTGATTGTGGTTGATCCTCTGT 57.628 40.909 0.00 0.00 37.07 3.41
3925 4032 4.945543 TCATTGATTGTGGTTGATCCTCTG 59.054 41.667 0.00 0.00 37.07 3.35
3926 4033 5.183530 TCATTGATTGTGGTTGATCCTCT 57.816 39.130 0.00 0.00 37.07 3.69
3927 4034 4.946157 ACTCATTGATTGTGGTTGATCCTC 59.054 41.667 0.00 0.00 37.07 3.71
3928 4035 4.703575 CACTCATTGATTGTGGTTGATCCT 59.296 41.667 0.00 0.00 37.07 3.24
3929 4036 4.676196 GCACTCATTGATTGTGGTTGATCC 60.676 45.833 5.97 0.00 32.85 3.36
3930 4037 4.418392 GCACTCATTGATTGTGGTTGATC 58.582 43.478 5.97 0.00 32.85 2.92
3931 4038 3.194116 GGCACTCATTGATTGTGGTTGAT 59.806 43.478 5.97 0.00 32.85 2.57
3932 4039 2.557924 GGCACTCATTGATTGTGGTTGA 59.442 45.455 5.97 0.00 32.85 3.18
3933 4040 2.559668 AGGCACTCATTGATTGTGGTTG 59.440 45.455 5.97 0.00 32.85 3.77
3934 4041 2.880443 AGGCACTCATTGATTGTGGTT 58.120 42.857 5.97 0.00 32.85 3.67
3935 4042 2.592102 AGGCACTCATTGATTGTGGT 57.408 45.000 5.97 0.00 32.85 4.16
3936 4043 4.012374 AGTTAGGCACTCATTGATTGTGG 58.988 43.478 5.97 0.00 41.75 4.17
3937 4044 5.633830 AAGTTAGGCACTCATTGATTGTG 57.366 39.130 5.97 4.20 41.75 3.33
3938 4045 6.714810 TGTTAAGTTAGGCACTCATTGATTGT 59.285 34.615 5.97 0.00 41.75 2.71
3939 4046 7.023575 GTGTTAAGTTAGGCACTCATTGATTG 58.976 38.462 10.56 0.00 41.75 2.67
3940 4047 6.128282 CGTGTTAAGTTAGGCACTCATTGATT 60.128 38.462 13.92 0.00 41.75 2.57
3941 4048 5.351465 CGTGTTAAGTTAGGCACTCATTGAT 59.649 40.000 13.92 0.00 41.75 2.57
3942 4049 4.688879 CGTGTTAAGTTAGGCACTCATTGA 59.311 41.667 13.92 0.00 41.75 2.57
3943 4050 4.688879 TCGTGTTAAGTTAGGCACTCATTG 59.311 41.667 13.92 3.41 41.75 2.82
3944 4051 4.890088 TCGTGTTAAGTTAGGCACTCATT 58.110 39.130 13.92 0.00 41.75 2.57
3945 4052 4.530710 TCGTGTTAAGTTAGGCACTCAT 57.469 40.909 13.92 0.00 41.75 2.90
3946 4053 4.053295 GTTCGTGTTAAGTTAGGCACTCA 58.947 43.478 13.92 3.01 41.75 3.41
3947 4054 3.431233 GGTTCGTGTTAAGTTAGGCACTC 59.569 47.826 13.92 7.41 41.75 3.51
3948 4055 3.070590 AGGTTCGTGTTAAGTTAGGCACT 59.929 43.478 13.92 0.00 46.37 4.40
3949 4056 3.396560 AGGTTCGTGTTAAGTTAGGCAC 58.603 45.455 8.68 8.68 0.00 5.01
3950 4057 3.756933 AGGTTCGTGTTAAGTTAGGCA 57.243 42.857 0.00 0.00 0.00 4.75
3951 4058 4.060205 TCAAGGTTCGTGTTAAGTTAGGC 58.940 43.478 0.00 0.00 0.00 3.93
3952 4059 5.295152 AGTCAAGGTTCGTGTTAAGTTAGG 58.705 41.667 0.00 0.00 0.00 2.69
3953 4060 6.585322 CCTAGTCAAGGTTCGTGTTAAGTTAG 59.415 42.308 0.00 0.00 40.94 2.34
3954 4061 6.265196 TCCTAGTCAAGGTTCGTGTTAAGTTA 59.735 38.462 0.00 0.00 46.62 2.24
3955 4062 5.069516 TCCTAGTCAAGGTTCGTGTTAAGTT 59.930 40.000 0.00 0.00 46.62 2.66
3956 4063 4.586001 TCCTAGTCAAGGTTCGTGTTAAGT 59.414 41.667 0.00 0.00 46.62 2.24
3957 4064 5.048224 TCTCCTAGTCAAGGTTCGTGTTAAG 60.048 44.000 0.00 0.00 46.62 1.85
3958 4065 4.828939 TCTCCTAGTCAAGGTTCGTGTTAA 59.171 41.667 0.00 0.00 46.62 2.01
3959 4066 4.401022 TCTCCTAGTCAAGGTTCGTGTTA 58.599 43.478 0.00 0.00 46.62 2.41
3960 4067 3.228453 TCTCCTAGTCAAGGTTCGTGTT 58.772 45.455 0.00 0.00 46.62 3.32
3961 4068 2.872732 TCTCCTAGTCAAGGTTCGTGT 58.127 47.619 0.00 0.00 46.62 4.49
3962 4069 4.035278 GATCTCCTAGTCAAGGTTCGTG 57.965 50.000 0.00 0.00 46.62 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.