Multiple sequence alignment - TraesCS6B01G434100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434100 chr6B 100.000 4622 0 0 1 4622 702816079 702811458 0.000000e+00 8536
1 TraesCS6B01G434100 chr6A 93.234 4685 206 44 1 4620 607932062 607927424 0.000000e+00 6793
2 TraesCS6B01G434100 chr6D 95.002 4282 156 20 1 4256 461333938 461329689 0.000000e+00 6669
3 TraesCS6B01G434100 chr6D 89.408 321 16 6 4302 4609 461329599 461329284 5.610000e-104 388


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434100 chr6B 702811458 702816079 4621 True 8536.0 8536 100.000 1 4622 1 chr6B.!!$R1 4621
1 TraesCS6B01G434100 chr6A 607927424 607932062 4638 True 6793.0 6793 93.234 1 4620 1 chr6A.!!$R1 4619
2 TraesCS6B01G434100 chr6D 461329284 461333938 4654 True 3528.5 6669 92.205 1 4609 2 chr6D.!!$R1 4608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.313672 GCACAACCGCCAAGATTTGA 59.686 50.0 0.00 0.0 0.00 2.69 F
170 171 0.400213 ACCGCCAAGATTTGAGTCCA 59.600 50.0 0.00 0.0 0.00 4.02 F
1875 1909 0.397564 TGCAGCTGTTCCATGACTCA 59.602 50.0 16.64 0.0 0.00 3.41 F
2970 3004 0.109781 CGGGCAAGTTGGATGAAACG 60.110 55.0 4.75 0.0 35.13 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1490 1.228367 CCTCAAACACCAGCCTGCT 60.228 57.895 0.00 0.0 0.00 4.24 R
1885 1919 1.560860 GACTGTGACAGCTTCGCCAC 61.561 60.000 13.37 0.0 34.37 5.01 R
3003 3037 0.034574 TTCGCCATACCATTGCACCT 60.035 50.000 0.00 0.0 0.00 4.00 R
4065 4112 0.099436 GTGCTGCAATCGCCTAAAGG 59.901 55.000 2.77 0.0 37.32 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.148651 ACCTAACTACTGGCTACAACAAG 57.851 43.478 0.00 0.00 0.00 3.16
103 104 3.933048 ATGTGCAGGGTGAGCTGCC 62.933 63.158 0.00 0.00 45.17 4.85
146 147 7.464830 AAACGAGTCTTCCAAATATACATCG 57.535 36.000 0.00 0.00 0.00 3.84
154 155 3.558006 TCCAAATATACATCGCACAACCG 59.442 43.478 0.00 0.00 0.00 4.44
164 165 1.003262 CGCACAACCGCCAAGATTTG 61.003 55.000 0.00 0.00 0.00 2.32
165 166 0.313672 GCACAACCGCCAAGATTTGA 59.686 50.000 0.00 0.00 0.00 2.69
166 167 1.666888 GCACAACCGCCAAGATTTGAG 60.667 52.381 0.00 0.00 0.00 3.02
167 168 1.608590 CACAACCGCCAAGATTTGAGT 59.391 47.619 0.00 0.00 0.00 3.41
168 169 1.880027 ACAACCGCCAAGATTTGAGTC 59.120 47.619 0.00 0.00 0.00 3.36
169 170 1.200020 CAACCGCCAAGATTTGAGTCC 59.800 52.381 0.00 0.00 0.00 3.85
170 171 0.400213 ACCGCCAAGATTTGAGTCCA 59.600 50.000 0.00 0.00 0.00 4.02
171 172 1.004745 ACCGCCAAGATTTGAGTCCAT 59.995 47.619 0.00 0.00 0.00 3.41
172 173 1.402968 CCGCCAAGATTTGAGTCCATG 59.597 52.381 0.00 0.00 0.00 3.66
173 174 1.402968 CGCCAAGATTTGAGTCCATGG 59.597 52.381 4.97 4.97 0.00 3.66
174 175 1.753073 GCCAAGATTTGAGTCCATGGG 59.247 52.381 13.02 0.00 0.00 4.00
175 176 1.753073 CCAAGATTTGAGTCCATGGGC 59.247 52.381 8.79 8.79 0.00 5.36
176 177 2.449464 CAAGATTTGAGTCCATGGGCA 58.551 47.619 20.74 8.93 0.00 5.36
177 178 3.028850 CAAGATTTGAGTCCATGGGCAT 58.971 45.455 20.74 2.23 0.00 4.40
178 179 2.941480 AGATTTGAGTCCATGGGCATC 58.059 47.619 20.74 12.59 0.00 3.91
179 180 1.959282 GATTTGAGTCCATGGGCATCC 59.041 52.381 20.74 7.79 0.00 3.51
211 212 2.385091 CGCCGGTACCGAAACAAGG 61.385 63.158 35.41 17.36 42.83 3.61
212 213 1.301953 GCCGGTACCGAAACAAGGT 60.302 57.895 35.41 0.00 45.28 3.50
344 352 2.312741 AGCCCCTTTTCATCCAAGATGA 59.687 45.455 3.17 3.17 0.00 2.92
399 407 3.949754 TGAAGCATTGAAGCCTAATCCAG 59.050 43.478 0.00 0.00 34.23 3.86
429 437 4.105217 TGGAGCATGATTCATGATAACCCT 59.895 41.667 26.94 14.51 40.71 4.34
898 924 3.479269 CCGCGAGCCGAAGTCAAC 61.479 66.667 8.23 0.00 40.02 3.18
948 974 1.536418 CACTCCCACTCCCACTCCA 60.536 63.158 0.00 0.00 0.00 3.86
1146 1180 3.192922 GGGGCGTTCGACGGAATG 61.193 66.667 8.96 0.00 42.82 2.67
1147 1181 2.433664 GGGCGTTCGACGGAATGT 60.434 61.111 8.96 0.00 42.82 2.71
1206 1240 2.658593 CGGGATGCCATCGTCGAC 60.659 66.667 5.18 5.18 0.00 4.20
1517 1551 2.508743 CGTGGACGTCGTTGCTTAA 58.491 52.632 9.92 0.00 34.11 1.85
1735 1769 4.641989 GCAATTCCCTGATGAACATGTACT 59.358 41.667 0.00 0.00 0.00 2.73
1830 1864 0.962356 CGTTGATGGCAGGCCTTCTT 60.962 55.000 22.09 0.00 39.94 2.52
1845 1879 3.069443 GCCTTCTTTTGAATGGGTGTGAA 59.931 43.478 0.00 0.00 37.85 3.18
1851 1885 3.304911 TTGAATGGGTGTGAAGTGGAA 57.695 42.857 0.00 0.00 0.00 3.53
1875 1909 0.397564 TGCAGCTGTTCCATGACTCA 59.602 50.000 16.64 0.00 0.00 3.41
1876 1910 1.202794 TGCAGCTGTTCCATGACTCAA 60.203 47.619 16.64 0.00 0.00 3.02
1885 1919 0.725686 CCATGACTCAAGAGCAAGCG 59.274 55.000 0.00 0.00 0.00 4.68
1927 1961 3.350833 ACCTACTCGACGGTAATCAAGT 58.649 45.455 0.00 0.00 0.00 3.16
1959 1993 3.907130 AAACAGCTGGCCCTGGCT 61.907 61.111 19.93 10.90 41.60 4.75
2217 2251 4.702131 GTCAAGCCAAATGAGTTCACCTAT 59.298 41.667 0.00 0.00 0.00 2.57
2463 2497 2.545532 CGATGGTGCCACAAATGTGTTT 60.546 45.455 12.21 0.00 44.21 2.83
2571 2605 0.550147 ACCAGGGTAGGCAGTTCCAT 60.550 55.000 0.00 0.00 37.29 3.41
2922 2956 1.212935 AGTCCCACCATGGAGCATTAC 59.787 52.381 21.47 8.54 40.96 1.89
2949 2983 0.324368 TGGTGGATCTCTACAGCCGT 60.324 55.000 0.00 0.00 34.39 5.68
2952 2986 1.299468 GGATCTCTACAGCCGTGCG 60.299 63.158 0.00 0.00 0.00 5.34
2970 3004 0.109781 CGGGCAAGTTGGATGAAACG 60.110 55.000 4.75 0.00 35.13 3.60
2982 3016 6.659242 AGTTGGATGAAACGATGAACCTTATT 59.341 34.615 0.00 0.00 35.13 1.40
3021 3055 0.747644 CAGGTGCAATGGTATGGCGA 60.748 55.000 0.00 0.00 0.00 5.54
3408 3442 0.323178 AGAAGGAAGCCATGCTGGTG 60.323 55.000 4.45 0.00 39.62 4.17
3764 3801 9.542462 CAGCTATACAAAGGTACAAGCTTATAA 57.458 33.333 0.00 0.00 44.00 0.98
3828 3867 3.130693 GCCGTCATACAGTTTCCTCTACT 59.869 47.826 0.00 0.00 0.00 2.57
3829 3868 4.381718 GCCGTCATACAGTTTCCTCTACTT 60.382 45.833 0.00 0.00 0.00 2.24
3830 3869 5.103000 CCGTCATACAGTTTCCTCTACTTG 58.897 45.833 0.00 0.00 0.00 3.16
3897 3936 8.692710 TCTTACACTGACGGTTTAGATGATATT 58.307 33.333 0.00 0.00 0.00 1.28
3968 4007 2.041620 TGGGCATCTAAACCTTCAAGCT 59.958 45.455 0.00 0.00 0.00 3.74
3997 4036 5.624159 TGAGCCATTGACTATCTAAATGGG 58.376 41.667 13.85 0.00 46.92 4.00
4008 4047 3.713826 TCTAAATGGGAGAACACCACC 57.286 47.619 0.00 0.00 41.58 4.61
4020 4067 7.039363 TGGGAGAACACCACCAAAAATTAATAG 60.039 37.037 0.00 0.00 31.83 1.73
4053 4100 1.993956 CATTTGGACTGAACCCCACA 58.006 50.000 0.00 0.00 31.11 4.17
4065 4112 2.514458 ACCCCACATGTCATCCTTTC 57.486 50.000 0.00 0.00 0.00 2.62
4076 4123 3.199946 TGTCATCCTTTCCTTTAGGCGAT 59.800 43.478 0.00 0.00 32.59 4.58
4145 4193 7.636150 ATCTGATTTTTGTCTCTGTTATGGG 57.364 36.000 0.00 0.00 0.00 4.00
4154 4202 4.164796 TGTCTCTGTTATGGGCTCATCATT 59.835 41.667 0.00 0.00 34.96 2.57
4155 4203 5.128919 GTCTCTGTTATGGGCTCATCATTT 58.871 41.667 0.00 0.00 34.96 2.32
4156 4204 6.126796 TGTCTCTGTTATGGGCTCATCATTTA 60.127 38.462 0.00 0.00 34.96 1.40
4166 4214 4.380867 GGGCTCATCATTTATTATTGGCCG 60.381 45.833 0.00 0.00 37.04 6.13
4229 4278 7.922837 TCAACATGAGTATGCATATCAACTTG 58.077 34.615 10.16 16.21 37.85 3.16
4237 4286 9.489084 GAGTATGCATATCAACTTGTACCATTA 57.511 33.333 10.16 0.00 0.00 1.90
4267 4316 9.798994 ATTTGAAAATCTCAGTGAATCTTATGC 57.201 29.630 0.00 0.00 34.81 3.14
4268 4317 7.926674 TGAAAATCTCAGTGAATCTTATGCA 57.073 32.000 0.00 0.00 0.00 3.96
4270 4319 9.617523 TGAAAATCTCAGTGAATCTTATGCATA 57.382 29.630 1.16 1.16 0.00 3.14
4276 4325 8.427276 TCTCAGTGAATCTTATGCATATCTGTT 58.573 33.333 7.36 0.87 0.00 3.16
4277 4326 8.969260 TCAGTGAATCTTATGCATATCTGTTT 57.031 30.769 7.36 3.14 0.00 2.83
4340 4434 3.895232 TTGTTGCCTACTTTTTGCCAA 57.105 38.095 0.00 0.00 0.00 4.52
4506 4609 6.126863 TCTTTGATCATGAGTAACAAGGGT 57.873 37.500 0.09 0.00 0.00 4.34
4507 4610 7.252612 TCTTTGATCATGAGTAACAAGGGTA 57.747 36.000 0.09 0.00 0.00 3.69
4508 4611 7.685481 TCTTTGATCATGAGTAACAAGGGTAA 58.315 34.615 0.09 0.00 0.00 2.85
4540 4643 6.158695 AGTGGTGTATGACTAGGAATCCAAAT 59.841 38.462 0.61 0.00 0.00 2.32
4541 4644 6.260936 GTGGTGTATGACTAGGAATCCAAATG 59.739 42.308 0.61 0.00 0.00 2.32
4543 4646 5.822519 GTGTATGACTAGGAATCCAAATGCA 59.177 40.000 0.61 0.00 0.00 3.96
4570 4673 4.397417 CCTTTTGTTCTCATCCATCCAGAC 59.603 45.833 0.00 0.00 0.00 3.51
4571 4674 4.916041 TTTGTTCTCATCCATCCAGACT 57.084 40.909 0.00 0.00 0.00 3.24
4610 4717 4.653341 ACTTTGATGATGGAAACCAAACCA 59.347 37.500 0.00 0.00 36.95 3.67
4613 4720 6.924913 TTGATGATGGAAACCAAACCATAA 57.075 33.333 0.00 0.00 45.41 1.90
4614 4721 6.279513 TGATGATGGAAACCAAACCATAAC 57.720 37.500 0.00 0.00 45.41 1.89
4615 4722 6.015918 TGATGATGGAAACCAAACCATAACT 58.984 36.000 0.00 0.00 45.41 2.24
4616 4723 5.720371 TGATGGAAACCAAACCATAACTG 57.280 39.130 0.00 0.00 45.41 3.16
4618 4725 5.835819 TGATGGAAACCAAACCATAACTGAA 59.164 36.000 0.00 0.00 45.41 3.02
4619 4726 6.496565 TGATGGAAACCAAACCATAACTGAAT 59.503 34.615 0.00 0.00 45.41 2.57
4620 4727 6.339587 TGGAAACCAAACCATAACTGAATC 57.660 37.500 0.00 0.00 0.00 2.52
4621 4728 5.245075 TGGAAACCAAACCATAACTGAATCC 59.755 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.613691 CCTGCACATTCCATTTTGCTC 58.386 47.619 0.00 0.00 35.91 4.26
103 104 3.546002 TTTCCCGAAACGCAACAATAG 57.454 42.857 0.00 0.00 0.00 1.73
146 147 0.313672 TCAAATCTTGGCGGTTGTGC 59.686 50.000 0.00 0.00 0.00 4.57
154 155 1.753073 CCCATGGACTCAAATCTTGGC 59.247 52.381 15.22 0.00 0.00 4.52
164 165 2.111878 CCGGATGCCCATGGACTC 59.888 66.667 15.22 6.47 0.00 3.36
165 166 4.195334 GCCGGATGCCCATGGACT 62.195 66.667 15.22 0.00 0.00 3.85
166 167 4.504596 TGCCGGATGCCCATGGAC 62.505 66.667 15.22 0.55 40.16 4.02
167 168 4.193893 CTGCCGGATGCCCATGGA 62.194 66.667 15.22 0.00 40.16 3.41
168 169 4.193893 TCTGCCGGATGCCCATGG 62.194 66.667 5.05 4.14 40.16 3.66
169 170 2.593725 CTCTGCCGGATGCCCATG 60.594 66.667 5.05 0.00 40.16 3.66
170 171 2.215451 AAACTCTGCCGGATGCCCAT 62.215 55.000 5.05 0.00 40.16 4.00
171 172 1.558167 TAAACTCTGCCGGATGCCCA 61.558 55.000 5.05 0.00 40.16 5.36
172 173 0.815615 CTAAACTCTGCCGGATGCCC 60.816 60.000 5.05 0.00 40.16 5.36
173 174 0.178068 TCTAAACTCTGCCGGATGCC 59.822 55.000 5.05 0.00 40.16 4.40
174 175 1.291132 GTCTAAACTCTGCCGGATGC 58.709 55.000 5.05 0.00 41.77 3.91
175 176 1.560923 CGTCTAAACTCTGCCGGATG 58.439 55.000 5.05 0.00 0.00 3.51
176 177 0.179108 GCGTCTAAACTCTGCCGGAT 60.179 55.000 5.05 0.00 0.00 4.18
177 178 1.214589 GCGTCTAAACTCTGCCGGA 59.785 57.895 5.05 0.00 0.00 5.14
178 179 1.810030 GGCGTCTAAACTCTGCCGG 60.810 63.158 0.00 0.00 35.77 6.13
179 180 3.782042 GGCGTCTAAACTCTGCCG 58.218 61.111 0.00 0.00 35.77 5.69
212 213 0.179137 CGTGTGCGATCCTTCTAGCA 60.179 55.000 0.00 0.00 41.33 3.49
344 352 3.653352 GCCTTATGGGGGTAGAAATCTCT 59.347 47.826 0.00 0.00 33.83 3.10
399 407 2.923121 TGAATCATGCTCCAGCTAACC 58.077 47.619 0.00 0.00 42.66 2.85
429 437 3.778075 TCCCGATTAGGACAGGATGAAAA 59.222 43.478 0.00 0.00 45.00 2.29
529 553 3.385384 CGAGGAGCAGCTGGACCA 61.385 66.667 17.12 0.00 0.00 4.02
695 719 3.077556 GCCTCGCCTTCCTCTCCA 61.078 66.667 0.00 0.00 0.00 3.86
860 885 0.182775 GCCTGGGTCGATATGGGTTT 59.817 55.000 0.00 0.00 0.00 3.27
985 1019 1.227674 CCATGCTACCTCGCTTCCC 60.228 63.158 0.00 0.00 0.00 3.97
986 1020 1.889573 GCCATGCTACCTCGCTTCC 60.890 63.158 0.00 0.00 0.00 3.46
1447 1481 2.677289 CCAGCCTGCTGTCCTCCAT 61.677 63.158 17.23 0.00 42.15 3.41
1456 1490 1.228367 CCTCAAACACCAGCCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
1470 1504 3.473647 CTCTGCGGCATCCCCTCA 61.474 66.667 1.75 0.00 0.00 3.86
1515 1549 2.810458 GCCTGCGCGTAACCGTTA 60.810 61.111 8.43 0.00 36.15 3.18
1735 1769 3.936203 AACCAGCCCGCACTTCGA 61.936 61.111 0.00 0.00 41.67 3.71
1830 1864 3.304911 TCCACTTCACACCCATTCAAA 57.695 42.857 0.00 0.00 0.00 2.69
1845 1879 3.255397 AGCTGCAGGGCTTCCACT 61.255 61.111 17.12 0.00 39.86 4.00
1851 1885 3.573229 TGGAACAGCTGCAGGGCT 61.573 61.111 17.12 5.02 44.10 5.19
1875 1909 2.280797 TTCGCCACGCTTGCTCTT 60.281 55.556 0.00 0.00 0.00 2.85
1876 1910 2.740055 CTTCGCCACGCTTGCTCT 60.740 61.111 0.00 0.00 0.00 4.09
1885 1919 1.560860 GACTGTGACAGCTTCGCCAC 61.561 60.000 13.37 0.00 34.37 5.01
1920 1954 6.403866 TTGAGGTTTGCACATAACTTGATT 57.596 33.333 0.12 0.00 0.00 2.57
1927 1961 3.636300 AGCTGTTTGAGGTTTGCACATAA 59.364 39.130 0.00 0.00 0.00 1.90
1981 2015 4.531854 TCTGAACTGAACCCATGTTTCAA 58.468 39.130 8.03 0.00 33.97 2.69
1983 2017 4.082571 CCATCTGAACTGAACCCATGTTTC 60.083 45.833 0.00 0.00 33.97 2.78
2217 2251 1.992667 GATGTTGTGAGCATCGTCGAA 59.007 47.619 0.00 0.00 38.61 3.71
2415 2449 1.475751 CCAGCTTGGGAATAGCACGAT 60.476 52.381 0.00 0.00 41.11 3.73
2571 2605 6.257849 GGTATCTGTATTTGATCGAAACAGCA 59.742 38.462 21.36 15.19 37.94 4.41
2922 2956 2.512286 AGATCCACCATGCACGCG 60.512 61.111 3.53 3.53 0.00 6.01
2949 2983 0.825425 TTTCATCCAACTTGCCCGCA 60.825 50.000 0.00 0.00 0.00 5.69
2952 2986 1.243902 TCGTTTCATCCAACTTGCCC 58.756 50.000 0.00 0.00 0.00 5.36
2970 3004 3.005155 GCATGCCTCCAATAAGGTTCATC 59.995 47.826 6.36 0.00 38.79 2.92
2982 3016 4.424711 GGGAACGGCATGCCTCCA 62.425 66.667 34.18 0.00 33.49 3.86
3003 3037 0.034574 TTCGCCATACCATTGCACCT 60.035 50.000 0.00 0.00 0.00 4.00
3091 3125 1.760268 GAATCGAGCGGCTCAAGCAG 61.760 60.000 27.83 12.48 44.36 4.24
3092 3126 1.811266 GAATCGAGCGGCTCAAGCA 60.811 57.895 27.83 10.16 44.36 3.91
3114 3148 1.514443 GGAGAGCAGCACGTACGTC 60.514 63.158 19.94 13.38 0.00 4.34
3117 3151 0.319555 TGTTGGAGAGCAGCACGTAC 60.320 55.000 0.00 0.00 0.00 3.67
3381 3415 0.326264 TGGCTTCCTTCTGCTCTTCC 59.674 55.000 0.00 0.00 0.00 3.46
3764 3801 1.424638 ACAGGCACAGAACCACTACT 58.575 50.000 0.00 0.00 0.00 2.57
3830 3869 6.751888 ACTCATGTTGCTCTTACAAAAACAAC 59.248 34.615 0.00 0.00 38.25 3.32
3897 3936 5.358442 TGCTTAGCTTCCTTGTTGTGTTTTA 59.642 36.000 5.60 0.00 0.00 1.52
3919 3958 4.145072 CGGTAAAAACACAAACACGTATGC 59.855 41.667 0.00 0.00 0.00 3.14
4020 4067 5.577945 CAGTCCAAATGCAACAATGGATTAC 59.422 40.000 13.90 5.11 45.59 1.89
4053 4100 3.199946 TCGCCTAAAGGAAAGGATGACAT 59.800 43.478 0.00 0.00 36.08 3.06
4065 4112 0.099436 GTGCTGCAATCGCCTAAAGG 59.901 55.000 2.77 0.00 37.32 3.11
4076 4123 1.525718 TACTACGTCGGGTGCTGCAA 61.526 55.000 2.77 0.00 0.00 4.08
4104 4151 2.804527 CAGATATGCACCAGGATGAACG 59.195 50.000 0.00 0.00 39.69 3.95
4145 4193 4.380867 CCCGGCCAATAATAAATGATGAGC 60.381 45.833 2.24 0.00 0.00 4.26
4154 4202 6.897986 TCTTTACTTACCCGGCCAATAATAA 58.102 36.000 2.24 0.00 0.00 1.40
4155 4203 6.497624 TCTTTACTTACCCGGCCAATAATA 57.502 37.500 2.24 0.00 0.00 0.98
4156 4204 5.376756 TCTTTACTTACCCGGCCAATAAT 57.623 39.130 2.24 0.00 0.00 1.28
4200 4249 7.486802 TGATATGCATACTCATGTTGAACAG 57.513 36.000 8.99 0.00 34.40 3.16
4252 4301 8.969260 AAACAGATATGCATAAGATTCACTGA 57.031 30.769 11.13 0.00 0.00 3.41
4340 4434 1.038681 GTTTGGTCACCCACCCGTTT 61.039 55.000 0.00 0.00 46.18 3.60
4365 4459 9.856488 GATATAAGAGCGGATAATTAGTTCACA 57.144 33.333 0.00 0.00 0.00 3.58
4381 4475 5.104776 TCCCACATGCCATAGATATAAGAGC 60.105 44.000 0.00 0.00 0.00 4.09
4506 4609 9.925545 TCCTAGTCATACACCACTACTTTATTA 57.074 33.333 0.00 0.00 0.00 0.98
4507 4610 8.834004 TCCTAGTCATACACCACTACTTTATT 57.166 34.615 0.00 0.00 0.00 1.40
4508 4611 8.834004 TTCCTAGTCATACACCACTACTTTAT 57.166 34.615 0.00 0.00 0.00 1.40
4543 4646 5.602145 TGGATGGATGAGAACAAAAGGTTTT 59.398 36.000 0.00 0.00 40.63 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.