Multiple sequence alignment - TraesCS6B01G434000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434000 chr6B 100.000 2834 0 0 1 2834 702670677 702667844 0.000000e+00 5234.0
1 TraesCS6B01G434000 chr6B 87.402 1151 119 14 710 1848 702658755 702659891 0.000000e+00 1299.0
2 TraesCS6B01G434000 chr6B 84.295 312 38 6 2297 2606 574640823 574640521 7.680000e-76 294.0
3 TraesCS6B01G434000 chr6B 86.131 274 29 5 1157 1430 702586948 702586684 1.280000e-73 287.0
4 TraesCS6B01G434000 chr6D 87.857 1227 114 19 638 1848 461262751 461261544 0.000000e+00 1408.0
5 TraesCS6B01G434000 chr6D 91.128 1037 76 6 801 1834 462302972 462303995 0.000000e+00 1391.0
6 TraesCS6B01G434000 chr6D 95.946 74 1 1 522 593 461262791 461262864 4.960000e-23 119.0
7 TraesCS6B01G434000 chr6D 82.474 97 2 3 405 501 461262981 461262900 1.410000e-08 71.3
8 TraesCS6B01G434000 chr6A 94.737 874 37 4 977 1850 607819395 607818531 0.000000e+00 1351.0
9 TraesCS6B01G434000 chr6A 90.964 498 22 7 2114 2609 607818423 607817947 0.000000e+00 649.0
10 TraesCS6B01G434000 chr6A 89.749 439 31 3 803 1241 609118211 609118635 1.480000e-152 549.0
11 TraesCS6B01G434000 chr6A 95.337 193 8 1 2641 2833 607817794 607817603 3.550000e-79 305.0
12 TraesCS6B01G434000 chr6A 88.060 134 16 0 130 263 607821659 607821526 2.920000e-35 159.0
13 TraesCS6B01G434000 chr6A 91.860 86 7 0 2034 2119 335811348 335811263 1.380000e-23 121.0
14 TraesCS6B01G434000 chr1B 83.434 332 40 8 2295 2624 272881414 272881732 7.680000e-76 294.0
15 TraesCS6B01G434000 chr1B 83.766 308 40 5 2301 2606 183064672 183064971 1.660000e-72 283.0
16 TraesCS6B01G434000 chr2B 83.129 326 40 8 2301 2624 10562777 10562465 1.660000e-72 283.0
17 TraesCS6B01G434000 chr2B 94.898 98 4 1 1846 1943 744873178 744873082 4.890000e-33 152.0
18 TraesCS6B01G434000 chr2B 96.154 78 3 0 2034 2111 560258061 560257984 8.240000e-26 128.0
19 TraesCS6B01G434000 chr1D 83.333 324 26 12 2307 2624 492940769 492941070 1.000000e-69 274.0
20 TraesCS6B01G434000 chr2A 83.412 211 25 5 2385 2593 52099383 52099181 1.340000e-43 187.0
21 TraesCS6B01G434000 chr2A 86.335 161 19 3 2641 2800 52098916 52098758 3.750000e-39 172.0
22 TraesCS6B01G434000 chr2A 95.833 96 4 0 1850 1945 41474248 41474153 3.780000e-34 156.0
23 TraesCS6B01G434000 chr2A 91.667 96 8 0 2294 2389 52099733 52099638 1.770000e-27 134.0
24 TraesCS6B01G434000 chr2A 93.827 81 5 0 2034 2114 459445339 459445259 3.830000e-24 122.0
25 TraesCS6B01G434000 chr5B 95.960 99 2 2 1850 1946 187861756 187861658 2.920000e-35 159.0
26 TraesCS6B01G434000 chr5B 94.253 87 5 0 1849 1935 669928411 669928497 1.770000e-27 134.0
27 TraesCS6B01G434000 chr5B 83.654 104 15 1 1850 1951 83791215 83791112 2.320000e-16 97.1
28 TraesCS6B01G434000 chr3B 98.889 90 0 1 1845 1934 5596330 5596418 2.920000e-35 159.0
29 TraesCS6B01G434000 chr3B 98.889 90 0 1 1845 1934 5735103 5735015 2.920000e-35 159.0
30 TraesCS6B01G434000 chr3B 96.203 79 3 0 2034 2112 798612902 798612980 2.290000e-26 130.0
31 TraesCS6B01G434000 chr3B 92.857 84 6 0 2034 2117 22706474 22706391 3.830000e-24 122.0
32 TraesCS6B01G434000 chr3B 90.789 76 6 1 1878 1953 741301398 741301324 1.800000e-17 100.0
33 TraesCS6B01G434000 chr3B 88.235 51 4 2 1900 1949 60016823 60016872 3.050000e-05 60.2
34 TraesCS6B01G434000 chr1A 96.809 94 2 1 1844 1937 584675591 584675683 3.780000e-34 156.0
35 TraesCS6B01G434000 chr7D 94.059 101 4 2 1843 1942 34845648 34845549 4.890000e-33 152.0
36 TraesCS6B01G434000 chr4B 92.523 107 7 1 1831 1937 659154413 659154308 4.890000e-33 152.0
37 TraesCS6B01G434000 chr4B 88.571 105 10 2 1850 1954 640313258 640313360 2.960000e-25 126.0
38 TraesCS6B01G434000 chr4B 85.470 117 12 5 1842 1956 175903818 175903705 1.780000e-22 117.0
39 TraesCS6B01G434000 chr4B 88.542 96 7 4 2034 2126 660113608 660113514 2.310000e-21 113.0
40 TraesCS6B01G434000 chr7A 93.069 101 6 1 1850 1950 213151349 213151250 2.280000e-31 147.0
41 TraesCS6B01G434000 chr3A 89.076 119 9 3 1840 1956 660055968 660055852 8.180000e-31 145.0
42 TraesCS6B01G434000 chr7B 95.122 82 3 1 2034 2114 105520773 105520854 8.240000e-26 128.0
43 TraesCS6B01G434000 chr7B 93.827 81 5 0 2034 2114 529726203 529726123 3.830000e-24 122.0
44 TraesCS6B01G434000 chr7B 91.860 86 7 0 2034 2119 435855760 435855845 1.380000e-23 121.0
45 TraesCS6B01G434000 chrUn 92.771 83 6 0 2034 2116 67136128 67136210 1.380000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434000 chr6B 702667844 702670677 2833 True 5234.00 5234 100.0000 1 2834 1 chr6B.!!$R3 2833
1 TraesCS6B01G434000 chr6B 702658755 702659891 1136 False 1299.00 1299 87.4020 710 1848 1 chr6B.!!$F1 1138
2 TraesCS6B01G434000 chr6D 462302972 462303995 1023 False 1391.00 1391 91.1280 801 1834 1 chr6D.!!$F2 1033
3 TraesCS6B01G434000 chr6D 461261544 461262981 1437 True 739.65 1408 85.1655 405 1848 2 chr6D.!!$R1 1443
4 TraesCS6B01G434000 chr6A 607817603 607821659 4056 True 616.00 1351 92.2745 130 2833 4 chr6A.!!$R2 2703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.106918 AAGGTCGGGCAACAAGACAA 60.107 50.0 0.0 0.0 44.41 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 3802 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.0 0.0 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.347865 ACCAACCAAACACGCCTT 57.652 50.000 0.00 0.00 0.00 4.35
18 19 3.498502 ACCAACCAAACACGCCTTA 57.501 47.368 0.00 0.00 0.00 2.69
19 20 1.314730 ACCAACCAAACACGCCTTAG 58.685 50.000 0.00 0.00 0.00 2.18
20 21 1.134037 ACCAACCAAACACGCCTTAGA 60.134 47.619 0.00 0.00 0.00 2.10
21 22 1.950909 CCAACCAAACACGCCTTAGAA 59.049 47.619 0.00 0.00 0.00 2.10
22 23 2.031157 CCAACCAAACACGCCTTAGAAG 60.031 50.000 0.00 0.00 0.00 2.85
34 35 2.633488 CCTTAGAAGGCCAAGTAGTGC 58.367 52.381 5.01 0.00 39.76 4.40
35 36 2.271800 CTTAGAAGGCCAAGTAGTGCG 58.728 52.381 5.01 0.00 0.00 5.34
36 37 1.263356 TAGAAGGCCAAGTAGTGCGT 58.737 50.000 5.01 0.00 0.00 5.24
37 38 1.263356 AGAAGGCCAAGTAGTGCGTA 58.737 50.000 5.01 0.00 0.00 4.42
38 39 1.204941 AGAAGGCCAAGTAGTGCGTAG 59.795 52.381 5.01 0.00 0.00 3.51
39 40 1.203994 GAAGGCCAAGTAGTGCGTAGA 59.796 52.381 5.01 0.00 0.00 2.59
40 41 1.486211 AGGCCAAGTAGTGCGTAGAT 58.514 50.000 5.01 0.00 0.00 1.98
41 42 1.137086 AGGCCAAGTAGTGCGTAGATG 59.863 52.381 5.01 0.00 0.00 2.90
42 43 1.134788 GGCCAAGTAGTGCGTAGATGT 60.135 52.381 0.00 0.00 0.00 3.06
43 44 1.927174 GCCAAGTAGTGCGTAGATGTG 59.073 52.381 0.00 0.00 0.00 3.21
44 45 2.540515 CCAAGTAGTGCGTAGATGTGG 58.459 52.381 0.00 0.00 0.00 4.17
45 46 2.094182 CCAAGTAGTGCGTAGATGTGGT 60.094 50.000 0.00 0.00 0.00 4.16
46 47 3.585862 CAAGTAGTGCGTAGATGTGGTT 58.414 45.455 0.00 0.00 0.00 3.67
47 48 4.381185 CCAAGTAGTGCGTAGATGTGGTTA 60.381 45.833 0.00 0.00 0.00 2.85
48 49 5.165676 CAAGTAGTGCGTAGATGTGGTTAA 58.834 41.667 0.00 0.00 0.00 2.01
49 50 5.593679 AGTAGTGCGTAGATGTGGTTAAT 57.406 39.130 0.00 0.00 0.00 1.40
50 51 5.348986 AGTAGTGCGTAGATGTGGTTAATG 58.651 41.667 0.00 0.00 0.00 1.90
51 52 4.465632 AGTGCGTAGATGTGGTTAATGA 57.534 40.909 0.00 0.00 0.00 2.57
52 53 4.433615 AGTGCGTAGATGTGGTTAATGAG 58.566 43.478 0.00 0.00 0.00 2.90
53 54 3.555956 GTGCGTAGATGTGGTTAATGAGG 59.444 47.826 0.00 0.00 0.00 3.86
54 55 3.131396 GCGTAGATGTGGTTAATGAGGG 58.869 50.000 0.00 0.00 0.00 4.30
55 56 3.431766 GCGTAGATGTGGTTAATGAGGGT 60.432 47.826 0.00 0.00 0.00 4.34
56 57 4.119862 CGTAGATGTGGTTAATGAGGGTG 58.880 47.826 0.00 0.00 0.00 4.61
57 58 3.652057 AGATGTGGTTAATGAGGGTGG 57.348 47.619 0.00 0.00 0.00 4.61
58 59 3.189606 AGATGTGGTTAATGAGGGTGGA 58.810 45.455 0.00 0.00 0.00 4.02
59 60 3.788142 AGATGTGGTTAATGAGGGTGGAT 59.212 43.478 0.00 0.00 0.00 3.41
60 61 3.644966 TGTGGTTAATGAGGGTGGATC 57.355 47.619 0.00 0.00 0.00 3.36
61 62 3.189606 TGTGGTTAATGAGGGTGGATCT 58.810 45.455 0.00 0.00 0.00 2.75
62 63 3.054434 TGTGGTTAATGAGGGTGGATCTG 60.054 47.826 0.00 0.00 0.00 2.90
63 64 2.509548 TGGTTAATGAGGGTGGATCTGG 59.490 50.000 0.00 0.00 0.00 3.86
64 65 2.509964 GGTTAATGAGGGTGGATCTGGT 59.490 50.000 0.00 0.00 0.00 4.00
65 66 3.433740 GGTTAATGAGGGTGGATCTGGTC 60.434 52.174 0.00 0.00 0.00 4.02
66 67 1.971149 AATGAGGGTGGATCTGGTCA 58.029 50.000 0.00 0.00 0.00 4.02
67 68 1.971149 ATGAGGGTGGATCTGGTCAA 58.029 50.000 0.00 0.00 0.00 3.18
68 69 1.279496 TGAGGGTGGATCTGGTCAAG 58.721 55.000 0.00 0.00 0.00 3.02
69 70 0.543749 GAGGGTGGATCTGGTCAAGG 59.456 60.000 0.00 0.00 0.00 3.61
70 71 0.178861 AGGGTGGATCTGGTCAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
71 72 0.253327 GGGTGGATCTGGTCAAGGTC 59.747 60.000 0.00 0.00 35.00 3.85
72 73 0.108138 GGTGGATCTGGTCAAGGTCG 60.108 60.000 0.00 0.00 36.83 4.79
73 74 0.108138 GTGGATCTGGTCAAGGTCGG 60.108 60.000 0.00 0.00 36.83 4.79
74 75 1.264749 TGGATCTGGTCAAGGTCGGG 61.265 60.000 0.00 0.00 36.83 5.14
75 76 1.153349 GATCTGGTCAAGGTCGGGC 60.153 63.158 0.00 0.00 0.00 6.13
76 77 1.899437 GATCTGGTCAAGGTCGGGCA 61.899 60.000 0.00 0.00 0.00 5.36
77 78 1.488705 ATCTGGTCAAGGTCGGGCAA 61.489 55.000 0.00 0.00 0.00 4.52
78 79 1.966451 CTGGTCAAGGTCGGGCAAC 60.966 63.158 0.00 0.00 0.00 4.17
79 80 2.112297 GGTCAAGGTCGGGCAACA 59.888 61.111 0.00 0.00 39.74 3.33
80 81 1.527380 GGTCAAGGTCGGGCAACAA 60.527 57.895 0.00 0.00 39.74 2.83
81 82 1.515521 GGTCAAGGTCGGGCAACAAG 61.516 60.000 0.00 0.00 39.74 3.16
82 83 0.534203 GTCAAGGTCGGGCAACAAGA 60.534 55.000 0.00 0.00 39.74 3.02
83 84 0.534203 TCAAGGTCGGGCAACAAGAC 60.534 55.000 0.00 0.00 42.67 3.01
84 85 0.817634 CAAGGTCGGGCAACAAGACA 60.818 55.000 0.00 0.00 44.41 3.41
85 86 0.106918 AAGGTCGGGCAACAAGACAA 60.107 50.000 0.00 0.00 44.41 3.18
86 87 0.110486 AGGTCGGGCAACAAGACAAT 59.890 50.000 0.00 0.00 44.41 2.71
87 88 0.240945 GGTCGGGCAACAAGACAATG 59.759 55.000 0.00 0.00 44.41 2.82
88 89 1.234821 GTCGGGCAACAAGACAATGA 58.765 50.000 0.00 0.00 42.84 2.57
89 90 1.197721 GTCGGGCAACAAGACAATGAG 59.802 52.381 0.00 0.00 42.84 2.90
90 91 0.523072 CGGGCAACAAGACAATGAGG 59.477 55.000 0.00 0.00 39.74 3.86
91 92 1.881925 CGGGCAACAAGACAATGAGGA 60.882 52.381 0.00 0.00 39.74 3.71
92 93 2.238521 GGGCAACAAGACAATGAGGAA 58.761 47.619 0.00 0.00 39.74 3.36
93 94 2.827921 GGGCAACAAGACAATGAGGAAT 59.172 45.455 0.00 0.00 39.74 3.01
94 95 3.119352 GGGCAACAAGACAATGAGGAATC 60.119 47.826 0.00 0.00 39.74 2.52
95 96 3.507233 GGCAACAAGACAATGAGGAATCA 59.493 43.478 0.00 0.00 0.00 2.57
96 97 4.479619 GCAACAAGACAATGAGGAATCAC 58.520 43.478 0.00 0.00 0.00 3.06
97 98 4.217118 GCAACAAGACAATGAGGAATCACT 59.783 41.667 0.00 0.00 0.00 3.41
98 99 5.618640 GCAACAAGACAATGAGGAATCACTC 60.619 44.000 0.00 0.00 37.99 3.51
99 100 4.583871 ACAAGACAATGAGGAATCACTCC 58.416 43.478 0.00 0.00 45.81 3.85
106 107 2.107141 GGAATCACTCCGAGGCCG 59.893 66.667 0.00 0.00 33.37 6.13
107 108 2.586357 GAATCACTCCGAGGCCGC 60.586 66.667 0.00 0.00 0.00 6.53
108 109 4.514577 AATCACTCCGAGGCCGCG 62.515 66.667 23.12 23.12 0.00 6.46
117 118 3.518998 GAGGCCGCGAGTGCTCTA 61.519 66.667 8.23 0.00 39.65 2.43
118 119 3.477224 GAGGCCGCGAGTGCTCTAG 62.477 68.421 8.23 0.00 39.65 2.43
149 150 7.247728 TGACGGCAAATATGTTCTTGTATTTC 58.752 34.615 0.00 0.00 30.32 2.17
153 154 9.086336 CGGCAAATATGTTCTTGTATTTCAAAT 57.914 29.630 0.00 0.00 35.48 2.32
206 207 9.176181 TGTTCATGTAATTTTAGAAAAGCGTTC 57.824 29.630 0.00 0.00 0.00 3.95
207 208 9.176181 GTTCATGTAATTTTAGAAAAGCGTTCA 57.824 29.630 6.05 0.00 0.00 3.18
222 223 9.301606 GAAAAGCGTTCACATATTTTAAAAAGC 57.698 29.630 4.44 0.00 0.00 3.51
224 225 5.060446 AGCGTTCACATATTTTAAAAAGCGC 59.940 36.000 16.51 16.51 39.04 5.92
226 227 5.220135 CGTTCACATATTTTAAAAAGCGCCC 60.220 40.000 2.29 0.00 0.00 6.13
228 229 3.549873 CACATATTTTAAAAAGCGCCCGG 59.450 43.478 2.29 0.00 0.00 5.73
237 238 0.537828 AAAGCGCCCGGTCCTAAAAA 60.538 50.000 2.29 0.00 0.00 1.94
243 244 1.817357 CCCGGTCCTAAAAAGTGGTC 58.183 55.000 0.00 0.00 0.00 4.02
252 253 5.644206 GTCCTAAAAAGTGGTCATCTTCCTC 59.356 44.000 0.00 0.00 0.00 3.71
258 259 1.734465 GTGGTCATCTTCCTCGCAAAG 59.266 52.381 0.00 0.00 0.00 2.77
263 264 4.271291 GGTCATCTTCCTCGCAAAGTATTC 59.729 45.833 0.00 0.00 0.00 1.75
264 265 4.870426 GTCATCTTCCTCGCAAAGTATTCA 59.130 41.667 0.00 0.00 0.00 2.57
266 267 4.265904 TCTTCCTCGCAAAGTATTCACA 57.734 40.909 0.00 0.00 0.00 3.58
267 268 4.832248 TCTTCCTCGCAAAGTATTCACAT 58.168 39.130 0.00 0.00 0.00 3.21
268 269 5.972935 TCTTCCTCGCAAAGTATTCACATA 58.027 37.500 0.00 0.00 0.00 2.29
269 270 6.582636 TCTTCCTCGCAAAGTATTCACATAT 58.417 36.000 0.00 0.00 0.00 1.78
270 271 7.047891 TCTTCCTCGCAAAGTATTCACATATT 58.952 34.615 0.00 0.00 0.00 1.28
271 272 7.552687 TCTTCCTCGCAAAGTATTCACATATTT 59.447 33.333 0.00 0.00 0.00 1.40
272 273 8.725405 TTCCTCGCAAAGTATTCACATATTTA 57.275 30.769 0.00 0.00 0.00 1.40
273 274 8.365399 TCCTCGCAAAGTATTCACATATTTAG 57.635 34.615 0.00 0.00 0.00 1.85
274 275 7.042051 TCCTCGCAAAGTATTCACATATTTAGC 60.042 37.037 0.00 0.00 0.00 3.09
275 276 6.954944 TCGCAAAGTATTCACATATTTAGCC 58.045 36.000 0.00 0.00 0.00 3.93
276 277 6.540551 TCGCAAAGTATTCACATATTTAGCCA 59.459 34.615 0.00 0.00 0.00 4.75
277 278 7.228507 TCGCAAAGTATTCACATATTTAGCCAT 59.771 33.333 0.00 0.00 0.00 4.40
278 279 7.324375 CGCAAAGTATTCACATATTTAGCCATG 59.676 37.037 0.00 0.00 0.00 3.66
279 280 8.352201 GCAAAGTATTCACATATTTAGCCATGA 58.648 33.333 0.00 0.00 0.00 3.07
282 283 8.978874 AGTATTCACATATTTAGCCATGAACA 57.021 30.769 0.00 0.00 0.00 3.18
283 284 9.407380 AGTATTCACATATTTAGCCATGAACAA 57.593 29.630 0.00 0.00 0.00 2.83
376 377 8.726650 TCAACATTGTTAGAAAAATGATCACG 57.273 30.769 11.34 0.00 37.26 4.35
377 378 8.349245 TCAACATTGTTAGAAAAATGATCACGT 58.651 29.630 11.34 0.00 37.26 4.49
378 379 9.605955 CAACATTGTTAGAAAAATGATCACGTA 57.394 29.630 11.34 0.00 37.26 3.57
391 392 5.828299 TGATCACGTAATTTTGAATCCCC 57.172 39.130 0.00 0.00 0.00 4.81
392 393 4.642885 TGATCACGTAATTTTGAATCCCCC 59.357 41.667 0.00 0.00 0.00 5.40
444 2041 6.184580 TGTGTGTTTAAAATGTCTTCGTGT 57.815 33.333 0.00 0.00 0.00 4.49
447 2044 7.271653 TGTGTGTTTAAAATGTCTTCGTGTTTC 59.728 33.333 0.00 0.00 0.00 2.78
450 2047 8.856247 GTGTTTAAAATGTCTTCGTGTTTCTTT 58.144 29.630 0.00 0.00 0.00 2.52
451 2048 9.413048 TGTTTAAAATGTCTTCGTGTTTCTTTT 57.587 25.926 0.00 0.00 0.00 2.27
454 2051 9.724839 TTAAAATGTCTTCGTGTTTCTTTTAGG 57.275 29.630 0.00 0.00 0.00 2.69
455 2052 5.941948 ATGTCTTCGTGTTTCTTTTAGGG 57.058 39.130 0.00 0.00 0.00 3.53
456 2053 4.131596 TGTCTTCGTGTTTCTTTTAGGGG 58.868 43.478 0.00 0.00 0.00 4.79
457 2054 4.141665 TGTCTTCGTGTTTCTTTTAGGGGA 60.142 41.667 0.00 0.00 0.00 4.81
458 2055 5.001874 GTCTTCGTGTTTCTTTTAGGGGAT 58.998 41.667 0.00 0.00 0.00 3.85
459 2056 5.121925 GTCTTCGTGTTTCTTTTAGGGGATC 59.878 44.000 0.00 0.00 0.00 3.36
460 2057 3.592059 TCGTGTTTCTTTTAGGGGATCG 58.408 45.455 0.00 0.00 0.00 3.69
461 2058 3.007182 TCGTGTTTCTTTTAGGGGATCGT 59.993 43.478 0.00 0.00 0.00 3.73
462 2059 3.124636 CGTGTTTCTTTTAGGGGATCGTG 59.875 47.826 0.00 0.00 0.00 4.35
463 2060 3.078837 TGTTTCTTTTAGGGGATCGTGC 58.921 45.455 0.00 0.00 0.00 5.34
464 2061 3.244770 TGTTTCTTTTAGGGGATCGTGCT 60.245 43.478 0.00 0.00 0.00 4.40
465 2062 3.713826 TTCTTTTAGGGGATCGTGCTT 57.286 42.857 0.00 0.00 0.00 3.91
505 2102 2.429058 CGATGGGCCATGGGAGAG 59.571 66.667 26.77 4.08 0.00 3.20
506 2103 2.842058 GATGGGCCATGGGAGAGG 59.158 66.667 26.77 0.00 0.00 3.69
509 2106 3.813724 GGGCCATGGGAGAGGTGG 61.814 72.222 15.13 0.00 36.09 4.61
511 2108 2.592308 GCCATGGGAGAGGTGGTC 59.408 66.667 15.13 0.00 35.44 4.02
544 2168 4.096003 CGGCGGTGGATTGGGAGT 62.096 66.667 0.00 0.00 0.00 3.85
546 2170 2.046285 GGCGGTGGATTGGGAGTTG 61.046 63.158 0.00 0.00 0.00 3.16
550 2174 0.407918 GGTGGATTGGGAGTTGGGAA 59.592 55.000 0.00 0.00 0.00 3.97
551 2175 1.545841 GTGGATTGGGAGTTGGGAAC 58.454 55.000 0.00 0.00 0.00 3.62
565 2189 3.015753 GAACCCTCCACCCTCCCC 61.016 72.222 0.00 0.00 0.00 4.81
569 2193 3.164269 CCTCCACCCTCCCCATCG 61.164 72.222 0.00 0.00 0.00 3.84
572 2271 1.540367 TCCACCCTCCCCATCGTTT 60.540 57.895 0.00 0.00 0.00 3.60
573 2272 1.137594 TCCACCCTCCCCATCGTTTT 61.138 55.000 0.00 0.00 0.00 2.43
621 2320 3.604875 TCCAAAATGGAGAGGACGTAC 57.395 47.619 0.00 0.00 42.67 3.67
632 2331 2.157738 GAGGACGTACTACCGCCATAT 58.842 52.381 0.00 0.00 0.00 1.78
633 2332 3.008375 AGAGGACGTACTACCGCCATATA 59.992 47.826 0.00 0.00 0.00 0.86
634 2333 3.341823 AGGACGTACTACCGCCATATAG 58.658 50.000 0.00 0.00 0.00 1.31
635 2334 2.159462 GGACGTACTACCGCCATATAGC 60.159 54.545 0.00 0.00 0.00 2.97
636 2335 1.815003 ACGTACTACCGCCATATAGCC 59.185 52.381 0.00 0.00 0.00 3.93
637 2336 1.133790 CGTACTACCGCCATATAGCCC 59.866 57.143 0.00 0.00 0.00 5.19
638 2337 1.479730 GTACTACCGCCATATAGCCCC 59.520 57.143 0.00 0.00 0.00 5.80
639 2338 0.178915 ACTACCGCCATATAGCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
640 2339 1.204146 CTACCGCCATATAGCCCCAT 58.796 55.000 0.00 0.00 0.00 4.00
641 2340 2.292653 ACTACCGCCATATAGCCCCATA 60.293 50.000 0.00 0.00 0.00 2.74
642 2341 1.893315 ACCGCCATATAGCCCCATAT 58.107 50.000 0.00 0.00 0.00 1.78
647 2346 4.503296 CCGCCATATAGCCCCATATTACTC 60.503 50.000 0.00 0.00 0.00 2.59
648 2347 4.100963 CGCCATATAGCCCCATATTACTCA 59.899 45.833 0.00 0.00 0.00 3.41
659 2358 2.890808 TATTACTCAAGGGCAGAGCG 57.109 50.000 0.00 0.00 36.58 5.03
664 2363 2.125350 CAAGGGCAGAGCGGACTC 60.125 66.667 0.00 0.00 43.82 3.36
682 2382 3.767673 GACTCCCGCCATATATTACTCCA 59.232 47.826 0.00 0.00 0.00 3.86
683 2383 3.514309 ACTCCCGCCATATATTACTCCAC 59.486 47.826 0.00 0.00 0.00 4.02
689 2389 2.418197 CCATATATTACTCCACGGCGGG 60.418 54.545 13.24 7.16 34.36 6.13
691 2391 1.477685 ATATTACTCCACGGCGGGGG 61.478 60.000 30.50 21.29 41.15 5.40
723 2423 5.122869 CGCCATATTACATCAGGAAGGATTG 59.877 44.000 0.00 0.00 0.00 2.67
918 2618 1.997874 CTCCTGTTCCCCCTCCCAG 60.998 68.421 0.00 0.00 0.00 4.45
919 2619 3.732849 CCTGTTCCCCCTCCCAGC 61.733 72.222 0.00 0.00 0.00 4.85
948 2660 1.908483 GGAGGAAGAGGAACCGCAT 59.092 57.895 0.00 0.00 0.00 4.73
1077 2789 1.908793 CGGCCGGACCCTGATCTAT 60.909 63.158 20.10 0.00 33.26 1.98
1170 2882 3.343421 GGCGACCGCACGTTCTTT 61.343 61.111 16.47 0.00 44.11 2.52
1476 3200 4.101448 GCCGTCCTGGTGCCTGAT 62.101 66.667 0.00 0.00 41.21 2.90
1724 3451 1.142778 GAGAATCCACTCAGCGTCGC 61.143 60.000 9.80 9.80 36.95 5.19
1758 3485 3.138798 GAGCTCACCGCCGACCTA 61.139 66.667 9.40 0.00 40.39 3.08
1784 3511 4.124351 CGAACGCCGGTCCAGCTA 62.124 66.667 1.90 0.00 33.91 3.32
1855 3582 5.193679 AGTTTGCCAGTAAATCATACTCCC 58.806 41.667 0.00 0.00 0.00 4.30
1858 3585 3.391296 TGCCAGTAAATCATACTCCCTCC 59.609 47.826 0.00 0.00 0.00 4.30
1859 3586 3.555168 GCCAGTAAATCATACTCCCTCCG 60.555 52.174 0.00 0.00 0.00 4.63
1860 3587 3.641906 CCAGTAAATCATACTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
1861 3588 4.831155 CCAGTAAATCATACTCCCTCCGTA 59.169 45.833 0.00 0.00 0.00 4.02
1862 3589 5.303589 CCAGTAAATCATACTCCCTCCGTAA 59.696 44.000 0.00 0.00 0.00 3.18
1863 3590 6.183360 CCAGTAAATCATACTCCCTCCGTAAA 60.183 42.308 0.00 0.00 0.00 2.01
1864 3591 6.700520 CAGTAAATCATACTCCCTCCGTAAAC 59.299 42.308 0.00 0.00 0.00 2.01
1866 3593 7.781693 AGTAAATCATACTCCCTCCGTAAACTA 59.218 37.037 0.00 0.00 0.00 2.24
1867 3594 7.427989 AAATCATACTCCCTCCGTAAACTAA 57.572 36.000 0.00 0.00 0.00 2.24
1868 3595 7.613551 AATCATACTCCCTCCGTAAACTAAT 57.386 36.000 0.00 0.00 0.00 1.73
1870 3597 8.896722 ATCATACTCCCTCCGTAAACTAATAT 57.103 34.615 0.00 0.00 0.00 1.28
1871 3598 9.986157 ATCATACTCCCTCCGTAAACTAATATA 57.014 33.333 0.00 0.00 0.00 0.86
1872 3599 9.812347 TCATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
1875 3602 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1876 3603 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1877 3604 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1878 3605 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1879 3606 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1880 3607 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1928 3655 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1929 3656 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1930 3657 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1931 3658 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1932 3659 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
1978 3705 8.226819 TGTATCGATCAGTCTAATTTCTCTGT 57.773 34.615 0.00 0.00 0.00 3.41
2006 3733 4.511826 CGAACTGACTGCTTTACTTTCCTT 59.488 41.667 0.00 0.00 0.00 3.36
2018 3745 8.081633 TGCTTTACTTTCCTTGAACAATGTATG 58.918 33.333 0.00 0.00 0.00 2.39
2027 3754 6.316140 TCCTTGAACAATGTATGTATCTGTGC 59.684 38.462 0.00 0.00 42.99 4.57
2028 3755 6.317140 CCTTGAACAATGTATGTATCTGTGCT 59.683 38.462 0.00 0.00 42.99 4.40
2029 3756 6.908870 TGAACAATGTATGTATCTGTGCTC 57.091 37.500 0.00 0.00 42.99 4.26
2030 3757 5.817296 TGAACAATGTATGTATCTGTGCTCC 59.183 40.000 0.00 0.00 42.99 4.70
2031 3758 5.357742 ACAATGTATGTATCTGTGCTCCA 57.642 39.130 0.00 0.00 41.63 3.86
2032 3759 5.933617 ACAATGTATGTATCTGTGCTCCAT 58.066 37.500 0.00 0.00 41.63 3.41
2033 3760 7.066307 ACAATGTATGTATCTGTGCTCCATA 57.934 36.000 0.00 0.00 41.63 2.74
2034 3761 7.683578 ACAATGTATGTATCTGTGCTCCATAT 58.316 34.615 0.00 0.00 41.63 1.78
2035 3762 8.159447 ACAATGTATGTATCTGTGCTCCATATT 58.841 33.333 0.00 0.00 41.63 1.28
2036 3763 9.006839 CAATGTATGTATCTGTGCTCCATATTT 57.993 33.333 0.00 0.00 0.00 1.40
2039 3766 9.657419 TGTATGTATCTGTGCTCCATATTTATG 57.343 33.333 0.00 0.00 0.00 1.90
2040 3767 9.875691 GTATGTATCTGTGCTCCATATTTATGA 57.124 33.333 0.00 0.00 35.75 2.15
2042 3769 9.970553 ATGTATCTGTGCTCCATATTTATGAAT 57.029 29.630 0.00 0.00 35.75 2.57
2043 3770 9.223099 TGTATCTGTGCTCCATATTTATGAATG 57.777 33.333 0.00 0.00 35.75 2.67
2044 3771 9.224267 GTATCTGTGCTCCATATTTATGAATGT 57.776 33.333 0.00 0.00 35.75 2.71
2045 3772 7.734924 TCTGTGCTCCATATTTATGAATGTC 57.265 36.000 0.00 0.00 35.75 3.06
2046 3773 7.281841 TCTGTGCTCCATATTTATGAATGTCA 58.718 34.615 0.00 0.00 35.75 3.58
2047 3774 7.227314 TCTGTGCTCCATATTTATGAATGTCAC 59.773 37.037 0.00 0.00 35.75 3.67
2048 3775 6.018016 TGTGCTCCATATTTATGAATGTCACG 60.018 38.462 0.00 0.00 35.75 4.35
2049 3776 6.017934 GTGCTCCATATTTATGAATGTCACGT 60.018 38.462 0.00 0.00 35.75 4.49
2050 3777 6.018016 TGCTCCATATTTATGAATGTCACGTG 60.018 38.462 9.94 9.94 35.75 4.49
2051 3778 6.017934 GCTCCATATTTATGAATGTCACGTGT 60.018 38.462 16.51 0.00 35.75 4.49
2052 3779 7.477144 TCCATATTTATGAATGTCACGTGTC 57.523 36.000 16.51 10.98 35.75 3.67
2053 3780 7.044798 TCCATATTTATGAATGTCACGTGTCA 58.955 34.615 17.50 17.50 35.75 3.58
2054 3781 7.714813 TCCATATTTATGAATGTCACGTGTCAT 59.285 33.333 20.34 20.34 35.75 3.06
2055 3782 8.344831 CCATATTTATGAATGTCACGTGTCATT 58.655 33.333 31.66 31.66 36.71 2.57
2056 3783 9.373750 CATATTTATGAATGTCACGTGTCATTC 57.626 33.333 38.60 38.60 44.79 2.67
2060 3787 4.926860 GAATGTCACGTGTCATTCATCA 57.073 40.909 39.38 19.88 44.32 3.07
2061 3788 4.890378 GAATGTCACGTGTCATTCATCAG 58.110 43.478 39.38 8.78 44.32 2.90
2062 3789 2.687370 TGTCACGTGTCATTCATCAGG 58.313 47.619 16.51 0.00 0.00 3.86
2063 3790 2.298729 TGTCACGTGTCATTCATCAGGA 59.701 45.455 16.51 0.00 0.00 3.86
2064 3791 3.055891 TGTCACGTGTCATTCATCAGGAT 60.056 43.478 16.51 0.00 0.00 3.24
2065 3792 3.308053 GTCACGTGTCATTCATCAGGATG 59.692 47.826 16.51 2.84 40.09 3.51
2066 3793 9.885351 AATGTCACGTGTCATTCATCAGGATGA 62.885 40.741 27.81 7.86 45.30 2.92
2077 3804 1.189752 TCAGGATGAGTCTCACCTGC 58.810 55.000 28.81 13.86 42.56 4.85
2078 3805 1.193323 CAGGATGAGTCTCACCTGCT 58.807 55.000 25.52 12.86 38.15 4.24
2079 3806 2.024941 TCAGGATGAGTCTCACCTGCTA 60.025 50.000 28.81 18.80 42.56 3.49
2080 3807 2.762887 CAGGATGAGTCTCACCTGCTAA 59.237 50.000 25.52 0.00 38.15 3.09
2081 3808 3.387374 CAGGATGAGTCTCACCTGCTAAT 59.613 47.826 25.52 3.91 38.15 1.73
2082 3809 3.640967 AGGATGAGTCTCACCTGCTAATC 59.359 47.826 17.95 5.53 30.44 1.75
2083 3810 3.244044 GGATGAGTCTCACCTGCTAATCC 60.244 52.174 4.21 1.87 34.22 3.01
2084 3811 1.751351 TGAGTCTCACCTGCTAATCCG 59.249 52.381 0.00 0.00 0.00 4.18
2085 3812 1.751924 GAGTCTCACCTGCTAATCCGT 59.248 52.381 0.00 0.00 0.00 4.69
2086 3813 1.478510 AGTCTCACCTGCTAATCCGTG 59.521 52.381 0.00 0.00 0.00 4.94
2087 3814 1.476891 GTCTCACCTGCTAATCCGTGA 59.523 52.381 0.00 0.00 34.26 4.35
2088 3815 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
2089 3816 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
2090 3817 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
2091 3818 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
2092 3819 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
2093 3820 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
2094 3821 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
2095 3822 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
2096 3823 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
2097 3824 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
2098 3825 1.645710 AATCCGTGAGACCTGGTCTT 58.354 50.000 28.90 13.89 43.53 3.01
2099 3826 2.526888 ATCCGTGAGACCTGGTCTTA 57.473 50.000 28.90 22.77 43.53 2.10
2100 3827 2.526888 TCCGTGAGACCTGGTCTTAT 57.473 50.000 28.90 8.85 43.53 1.73
2101 3828 3.657398 TCCGTGAGACCTGGTCTTATA 57.343 47.619 28.90 16.22 43.53 0.98
2102 3829 3.552875 TCCGTGAGACCTGGTCTTATAG 58.447 50.000 28.90 20.93 43.53 1.31
2103 3830 3.201487 TCCGTGAGACCTGGTCTTATAGA 59.799 47.826 28.90 20.96 43.53 1.98
2104 3831 3.952323 CCGTGAGACCTGGTCTTATAGAA 59.048 47.826 28.90 9.44 43.53 2.10
2105 3832 4.585162 CCGTGAGACCTGGTCTTATAGAAT 59.415 45.833 28.90 5.72 43.53 2.40
2106 3833 5.069251 CCGTGAGACCTGGTCTTATAGAATT 59.931 44.000 28.90 4.96 43.53 2.17
2107 3834 6.407074 CCGTGAGACCTGGTCTTATAGAATTT 60.407 42.308 28.90 4.18 43.53 1.82
2108 3835 7.042335 CGTGAGACCTGGTCTTATAGAATTTT 58.958 38.462 28.90 3.64 43.53 1.82
2109 3836 7.549488 CGTGAGACCTGGTCTTATAGAATTTTT 59.451 37.037 28.90 3.43 43.53 1.94
2154 3881 0.526662 ACCTCGGTTGCTACTCTTCG 59.473 55.000 0.00 0.00 0.00 3.79
2156 3883 0.526662 CTCGGTTGCTACTCTTCGGT 59.473 55.000 0.00 0.00 0.00 4.69
2157 3884 0.524862 TCGGTTGCTACTCTTCGGTC 59.475 55.000 0.00 0.00 0.00 4.79
2158 3885 0.458025 CGGTTGCTACTCTTCGGTCC 60.458 60.000 0.00 0.00 0.00 4.46
2159 3886 0.606604 GGTTGCTACTCTTCGGTCCA 59.393 55.000 0.00 0.00 0.00 4.02
2160 3887 1.207329 GGTTGCTACTCTTCGGTCCAT 59.793 52.381 0.00 0.00 0.00 3.41
2161 3888 2.541556 GTTGCTACTCTTCGGTCCATC 58.458 52.381 0.00 0.00 0.00 3.51
2162 3889 2.145397 TGCTACTCTTCGGTCCATCT 57.855 50.000 0.00 0.00 0.00 2.90
2163 3890 2.457598 TGCTACTCTTCGGTCCATCTT 58.542 47.619 0.00 0.00 0.00 2.40
2164 3891 2.832129 TGCTACTCTTCGGTCCATCTTT 59.168 45.455 0.00 0.00 0.00 2.52
2165 3892 3.190874 GCTACTCTTCGGTCCATCTTTG 58.809 50.000 0.00 0.00 0.00 2.77
2166 3893 2.770164 ACTCTTCGGTCCATCTTTGG 57.230 50.000 0.00 0.00 45.15 3.28
2167 3894 1.339151 ACTCTTCGGTCCATCTTTGGC 60.339 52.381 0.00 0.00 43.29 4.52
2168 3895 0.984230 TCTTCGGTCCATCTTTGGCT 59.016 50.000 0.00 0.00 43.29 4.75
2185 3912 1.202348 GGCTTCTTTTGGCGTTGCTAT 59.798 47.619 0.00 0.00 0.00 2.97
2220 3947 5.221224 CCTGAAAAATCACCTACTGTGCAAA 60.221 40.000 0.00 0.00 45.03 3.68
2228 3955 5.804639 TCACCTACTGTGCAAATTACAGAT 58.195 37.500 12.70 1.95 46.52 2.90
2230 3957 7.041721 TCACCTACTGTGCAAATTACAGATAG 58.958 38.462 12.70 10.00 46.52 2.08
2321 4048 1.658994 TTTGAACGAGACAAAGGCGT 58.341 45.000 0.00 0.00 40.35 5.68
2373 4100 3.687212 TGCAGTTTACATGGGTAATGACG 59.313 43.478 0.00 0.00 39.15 4.35
2391 4118 5.453567 TGACGTATCCCTGATGAGTAATG 57.546 43.478 0.00 0.00 0.00 1.90
2421 4148 1.817099 CTGAATCAGGGGACAGCGC 60.817 63.158 0.00 0.00 0.00 5.92
2461 4188 8.494016 AACATTACAGCAACTAATCCTAGAAC 57.506 34.615 0.00 0.00 0.00 3.01
2485 4212 5.621329 CGTTGTTGGGGAAATAAATCCTGAC 60.621 44.000 0.00 0.00 39.57 3.51
2486 4213 5.269554 TGTTGGGGAAATAAATCCTGACT 57.730 39.130 0.00 0.00 39.57 3.41
2528 4257 3.795877 TGAGCATCACAATTATCAGCGA 58.204 40.909 0.00 0.00 42.56 4.93
2529 4258 4.190772 TGAGCATCACAATTATCAGCGAA 58.809 39.130 0.00 0.00 42.56 4.70
2530 4259 4.818005 TGAGCATCACAATTATCAGCGAAT 59.182 37.500 0.00 0.00 42.56 3.34
2531 4260 5.049886 TGAGCATCACAATTATCAGCGAATC 60.050 40.000 0.00 0.00 42.56 2.52
2532 4261 4.214971 AGCATCACAATTATCAGCGAATCC 59.785 41.667 0.00 0.00 0.00 3.01
2533 4262 4.705492 CATCACAATTATCAGCGAATCCG 58.295 43.478 0.00 0.00 39.16 4.18
2534 4263 3.130633 TCACAATTATCAGCGAATCCGG 58.869 45.455 0.00 0.00 36.06 5.14
2535 4264 3.130633 CACAATTATCAGCGAATCCGGA 58.869 45.455 6.61 6.61 36.06 5.14
2536 4265 3.748048 CACAATTATCAGCGAATCCGGAT 59.252 43.478 12.38 12.38 36.06 4.18
2537 4266 3.997021 ACAATTATCAGCGAATCCGGATC 59.003 43.478 19.43 10.45 36.06 3.36
2538 4267 2.743636 TTATCAGCGAATCCGGATCC 57.256 50.000 19.43 3.14 36.06 3.36
2546 4275 2.540515 CGAATCCGGATCCGAATATGG 58.459 52.381 35.42 17.21 42.83 2.74
2593 4322 4.557690 CAGTGGTATTACAGAAGTTCGTCG 59.442 45.833 0.00 0.00 0.00 5.12
2606 4335 3.251571 AGTTCGTCGGAATGCTTCTTAC 58.748 45.455 0.00 0.00 34.05 2.34
2609 4338 2.230508 TCGTCGGAATGCTTCTTACTGT 59.769 45.455 0.00 0.00 0.00 3.55
2610 4339 3.441222 TCGTCGGAATGCTTCTTACTGTA 59.559 43.478 0.00 0.00 0.00 2.74
2611 4340 4.097437 TCGTCGGAATGCTTCTTACTGTAT 59.903 41.667 0.00 0.00 0.00 2.29
2612 4341 4.804139 CGTCGGAATGCTTCTTACTGTATT 59.196 41.667 0.00 0.00 0.00 1.89
2613 4342 5.291128 CGTCGGAATGCTTCTTACTGTATTT 59.709 40.000 0.00 0.00 0.00 1.40
2614 4343 6.478588 GTCGGAATGCTTCTTACTGTATTTG 58.521 40.000 0.00 0.00 0.00 2.32
2615 4344 5.064707 TCGGAATGCTTCTTACTGTATTTGC 59.935 40.000 0.00 0.00 0.00 3.68
2616 4345 5.582550 GGAATGCTTCTTACTGTATTTGCC 58.417 41.667 0.00 0.00 0.00 4.52
2617 4346 5.125417 GGAATGCTTCTTACTGTATTTGCCA 59.875 40.000 0.00 0.00 0.00 4.92
2618 4347 6.350110 GGAATGCTTCTTACTGTATTTGCCAA 60.350 38.462 0.00 0.00 0.00 4.52
2619 4348 6.780457 ATGCTTCTTACTGTATTTGCCAAT 57.220 33.333 0.00 0.00 0.00 3.16
2621 4350 5.476599 TGCTTCTTACTGTATTTGCCAATGT 59.523 36.000 0.00 0.00 0.00 2.71
2622 4351 6.030228 GCTTCTTACTGTATTTGCCAATGTC 58.970 40.000 0.00 0.00 0.00 3.06
2644 4470 3.470709 CCGCTAGATTGATTCCATGTGT 58.529 45.455 0.00 0.00 0.00 3.72
2656 4505 3.548745 TCCATGTGTCTCTGCCAATAG 57.451 47.619 0.00 0.00 0.00 1.73
2660 4509 1.281899 GTGTCTCTGCCAATAGTCGC 58.718 55.000 0.00 0.00 0.00 5.19
2799 4648 4.278170 TGTGTAAATTTGGACTGAAGCTGG 59.722 41.667 0.00 0.00 0.00 4.85
2827 4676 3.063997 CGGTGCTATCAATTGTGGTTCTC 59.936 47.826 5.13 0.00 0.00 2.87
2833 4682 5.064452 GCTATCAATTGTGGTTCTCTGTCTG 59.936 44.000 5.13 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134037 TCTAAGGCGTGTTTGGTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
1 2 1.600023 TCTAAGGCGTGTTTGGTTGG 58.400 50.000 0.00 0.00 0.00 3.77
2 3 2.031157 CCTTCTAAGGCGTGTTTGGTTG 60.031 50.000 0.00 0.00 39.76 3.77
3 4 2.227194 CCTTCTAAGGCGTGTTTGGTT 58.773 47.619 0.00 0.00 39.76 3.67
4 5 1.892209 CCTTCTAAGGCGTGTTTGGT 58.108 50.000 0.00 0.00 39.76 3.67
15 16 2.271800 CGCACTACTTGGCCTTCTAAG 58.728 52.381 3.32 0.83 0.00 2.18
16 17 1.621814 ACGCACTACTTGGCCTTCTAA 59.378 47.619 3.32 0.00 0.00 2.10
17 18 1.263356 ACGCACTACTTGGCCTTCTA 58.737 50.000 3.32 0.00 0.00 2.10
18 19 1.204941 CTACGCACTACTTGGCCTTCT 59.795 52.381 3.32 0.00 0.00 2.85
19 20 1.203994 TCTACGCACTACTTGGCCTTC 59.796 52.381 3.32 0.00 0.00 3.46
20 21 1.263356 TCTACGCACTACTTGGCCTT 58.737 50.000 3.32 0.00 0.00 4.35
21 22 1.137086 CATCTACGCACTACTTGGCCT 59.863 52.381 3.32 0.00 0.00 5.19
22 23 1.134788 ACATCTACGCACTACTTGGCC 60.135 52.381 0.00 0.00 0.00 5.36
23 24 1.927174 CACATCTACGCACTACTTGGC 59.073 52.381 0.00 0.00 0.00 4.52
24 25 2.094182 ACCACATCTACGCACTACTTGG 60.094 50.000 0.00 0.00 0.00 3.61
25 26 3.232213 ACCACATCTACGCACTACTTG 57.768 47.619 0.00 0.00 0.00 3.16
26 27 3.955650 AACCACATCTACGCACTACTT 57.044 42.857 0.00 0.00 0.00 2.24
27 28 5.126545 TCATTAACCACATCTACGCACTACT 59.873 40.000 0.00 0.00 0.00 2.57
28 29 5.345702 TCATTAACCACATCTACGCACTAC 58.654 41.667 0.00 0.00 0.00 2.73
29 30 5.451381 CCTCATTAACCACATCTACGCACTA 60.451 44.000 0.00 0.00 0.00 2.74
30 31 4.433615 CTCATTAACCACATCTACGCACT 58.566 43.478 0.00 0.00 0.00 4.40
31 32 3.555956 CCTCATTAACCACATCTACGCAC 59.444 47.826 0.00 0.00 0.00 5.34
32 33 3.431626 CCCTCATTAACCACATCTACGCA 60.432 47.826 0.00 0.00 0.00 5.24
33 34 3.131396 CCCTCATTAACCACATCTACGC 58.869 50.000 0.00 0.00 0.00 4.42
34 35 4.119862 CACCCTCATTAACCACATCTACG 58.880 47.826 0.00 0.00 0.00 3.51
35 36 4.163458 TCCACCCTCATTAACCACATCTAC 59.837 45.833 0.00 0.00 0.00 2.59
36 37 4.367166 TCCACCCTCATTAACCACATCTA 58.633 43.478 0.00 0.00 0.00 1.98
37 38 3.189606 TCCACCCTCATTAACCACATCT 58.810 45.455 0.00 0.00 0.00 2.90
38 39 3.644966 TCCACCCTCATTAACCACATC 57.355 47.619 0.00 0.00 0.00 3.06
39 40 3.788142 AGATCCACCCTCATTAACCACAT 59.212 43.478 0.00 0.00 0.00 3.21
40 41 3.054434 CAGATCCACCCTCATTAACCACA 60.054 47.826 0.00 0.00 0.00 4.17
41 42 3.545703 CAGATCCACCCTCATTAACCAC 58.454 50.000 0.00 0.00 0.00 4.16
42 43 2.509548 CCAGATCCACCCTCATTAACCA 59.490 50.000 0.00 0.00 0.00 3.67
43 44 2.509964 ACCAGATCCACCCTCATTAACC 59.490 50.000 0.00 0.00 0.00 2.85
44 45 3.199946 TGACCAGATCCACCCTCATTAAC 59.800 47.826 0.00 0.00 0.00 2.01
45 46 3.459828 TGACCAGATCCACCCTCATTAA 58.540 45.455 0.00 0.00 0.00 1.40
46 47 3.129262 TGACCAGATCCACCCTCATTA 57.871 47.619 0.00 0.00 0.00 1.90
47 48 1.971149 TGACCAGATCCACCCTCATT 58.029 50.000 0.00 0.00 0.00 2.57
48 49 1.842562 CTTGACCAGATCCACCCTCAT 59.157 52.381 0.00 0.00 0.00 2.90
49 50 1.279496 CTTGACCAGATCCACCCTCA 58.721 55.000 0.00 0.00 0.00 3.86
50 51 0.543749 CCTTGACCAGATCCACCCTC 59.456 60.000 0.00 0.00 0.00 4.30
51 52 0.178861 ACCTTGACCAGATCCACCCT 60.179 55.000 0.00 0.00 0.00 4.34
52 53 0.253327 GACCTTGACCAGATCCACCC 59.747 60.000 0.00 0.00 0.00 4.61
53 54 0.108138 CGACCTTGACCAGATCCACC 60.108 60.000 0.00 0.00 0.00 4.61
54 55 0.108138 CCGACCTTGACCAGATCCAC 60.108 60.000 0.00 0.00 0.00 4.02
55 56 1.264749 CCCGACCTTGACCAGATCCA 61.265 60.000 0.00 0.00 0.00 3.41
56 57 1.522569 CCCGACCTTGACCAGATCC 59.477 63.158 0.00 0.00 0.00 3.36
57 58 1.153349 GCCCGACCTTGACCAGATC 60.153 63.158 0.00 0.00 0.00 2.75
58 59 1.488705 TTGCCCGACCTTGACCAGAT 61.489 55.000 0.00 0.00 0.00 2.90
59 60 2.144078 TTGCCCGACCTTGACCAGA 61.144 57.895 0.00 0.00 0.00 3.86
60 61 1.966451 GTTGCCCGACCTTGACCAG 60.966 63.158 0.00 0.00 0.00 4.00
61 62 2.112297 GTTGCCCGACCTTGACCA 59.888 61.111 0.00 0.00 0.00 4.02
62 63 1.515521 CTTGTTGCCCGACCTTGACC 61.516 60.000 0.00 0.00 0.00 4.02
63 64 0.534203 TCTTGTTGCCCGACCTTGAC 60.534 55.000 0.00 0.00 0.00 3.18
64 65 0.534203 GTCTTGTTGCCCGACCTTGA 60.534 55.000 0.00 0.00 0.00 3.02
65 66 0.817634 TGTCTTGTTGCCCGACCTTG 60.818 55.000 0.00 0.00 0.00 3.61
66 67 0.106918 TTGTCTTGTTGCCCGACCTT 60.107 50.000 0.00 0.00 0.00 3.50
67 68 0.110486 ATTGTCTTGTTGCCCGACCT 59.890 50.000 0.00 0.00 0.00 3.85
68 69 0.240945 CATTGTCTTGTTGCCCGACC 59.759 55.000 0.00 0.00 0.00 4.79
69 70 1.197721 CTCATTGTCTTGTTGCCCGAC 59.802 52.381 0.00 0.00 0.00 4.79
70 71 1.522668 CTCATTGTCTTGTTGCCCGA 58.477 50.000 0.00 0.00 0.00 5.14
71 72 0.523072 CCTCATTGTCTTGTTGCCCG 59.477 55.000 0.00 0.00 0.00 6.13
72 73 1.909700 TCCTCATTGTCTTGTTGCCC 58.090 50.000 0.00 0.00 0.00 5.36
73 74 3.507233 TGATTCCTCATTGTCTTGTTGCC 59.493 43.478 0.00 0.00 0.00 4.52
74 75 4.217118 AGTGATTCCTCATTGTCTTGTTGC 59.783 41.667 0.00 0.00 32.98 4.17
75 76 5.106396 GGAGTGATTCCTCATTGTCTTGTTG 60.106 44.000 0.00 0.00 43.16 3.33
76 77 5.006386 GGAGTGATTCCTCATTGTCTTGTT 58.994 41.667 0.00 0.00 43.16 2.83
77 78 4.583871 GGAGTGATTCCTCATTGTCTTGT 58.416 43.478 0.00 0.00 43.16 3.16
78 79 3.620374 CGGAGTGATTCCTCATTGTCTTG 59.380 47.826 0.00 0.00 44.41 3.02
79 80 3.515502 TCGGAGTGATTCCTCATTGTCTT 59.484 43.478 0.00 0.00 44.41 3.01
80 81 3.099905 TCGGAGTGATTCCTCATTGTCT 58.900 45.455 0.00 0.00 44.41 3.41
81 82 3.452474 CTCGGAGTGATTCCTCATTGTC 58.548 50.000 0.00 0.00 44.41 3.18
82 83 2.169352 CCTCGGAGTGATTCCTCATTGT 59.831 50.000 4.02 0.00 44.41 2.71
83 84 2.831333 CCTCGGAGTGATTCCTCATTG 58.169 52.381 4.02 0.00 44.41 2.82
84 85 1.139853 GCCTCGGAGTGATTCCTCATT 59.860 52.381 4.02 0.00 44.41 2.57
85 86 0.755686 GCCTCGGAGTGATTCCTCAT 59.244 55.000 4.02 0.00 44.41 2.90
86 87 1.330655 GGCCTCGGAGTGATTCCTCA 61.331 60.000 4.02 0.00 44.41 3.86
87 88 1.443828 GGCCTCGGAGTGATTCCTC 59.556 63.158 4.02 0.00 44.41 3.71
88 89 2.427245 CGGCCTCGGAGTGATTCCT 61.427 63.158 0.00 0.00 44.41 3.36
89 90 2.107141 CGGCCTCGGAGTGATTCC 59.893 66.667 0.00 0.00 43.04 3.01
90 91 2.586357 GCGGCCTCGGAGTGATTC 60.586 66.667 0.00 0.00 36.79 2.52
91 92 4.514577 CGCGGCCTCGGAGTGATT 62.515 66.667 7.39 0.00 36.79 2.57
100 101 3.477224 CTAGAGCACTCGCGGCCTC 62.477 68.421 6.13 7.18 45.49 4.70
101 102 3.522731 CTAGAGCACTCGCGGCCT 61.523 66.667 6.13 4.29 45.49 5.19
111 112 1.080772 CCGTCAACGTGCTAGAGCA 60.081 57.895 0.00 0.00 42.01 4.26
112 113 2.445438 GCCGTCAACGTGCTAGAGC 61.445 63.158 0.00 0.00 37.74 4.09
113 114 0.666274 TTGCCGTCAACGTGCTAGAG 60.666 55.000 14.11 0.00 36.80 2.43
114 115 0.249531 TTTGCCGTCAACGTGCTAGA 60.250 50.000 14.11 0.00 36.80 2.43
115 116 0.796312 ATTTGCCGTCAACGTGCTAG 59.204 50.000 14.11 0.00 36.80 3.42
116 117 2.081725 TATTTGCCGTCAACGTGCTA 57.918 45.000 14.11 6.75 36.80 3.49
117 118 1.130373 CATATTTGCCGTCAACGTGCT 59.870 47.619 14.11 1.58 36.80 4.40
118 119 1.135803 ACATATTTGCCGTCAACGTGC 60.136 47.619 1.48 5.57 37.74 5.34
119 120 2.892373 ACATATTTGCCGTCAACGTG 57.108 45.000 1.48 0.00 37.74 4.49
120 121 3.071479 AGAACATATTTGCCGTCAACGT 58.929 40.909 1.48 0.00 37.74 3.99
121 122 3.740044 AGAACATATTTGCCGTCAACG 57.260 42.857 0.00 0.00 39.44 4.10
122 123 4.794169 ACAAGAACATATTTGCCGTCAAC 58.206 39.130 0.00 0.00 30.75 3.18
123 124 6.751514 ATACAAGAACATATTTGCCGTCAA 57.248 33.333 0.00 0.00 0.00 3.18
124 125 6.751514 AATACAAGAACATATTTGCCGTCA 57.248 33.333 0.00 0.00 0.00 4.35
125 126 7.247728 TGAAATACAAGAACATATTTGCCGTC 58.752 34.615 0.00 0.00 32.42 4.79
126 127 7.151999 TGAAATACAAGAACATATTTGCCGT 57.848 32.000 0.00 0.00 32.42 5.68
127 128 8.459521 TTTGAAATACAAGAACATATTTGCCG 57.540 30.769 0.00 0.00 39.77 5.69
149 150 9.894783 TGGAAATGCATGTTGAATAAAAATTTG 57.105 25.926 0.00 0.00 0.00 2.32
197 198 8.001549 CGCTTTTTAAAATATGTGAACGCTTTT 58.998 29.630 0.55 0.00 0.00 2.27
202 203 5.220135 GGGCGCTTTTTAAAATATGTGAACG 60.220 40.000 7.64 0.00 0.00 3.95
206 207 3.549873 CCGGGCGCTTTTTAAAATATGTG 59.450 43.478 7.64 3.86 0.00 3.21
207 208 3.193903 ACCGGGCGCTTTTTAAAATATGT 59.806 39.130 7.64 0.00 0.00 2.29
222 223 1.303091 CCACTTTTTAGGACCGGGCG 61.303 60.000 6.32 0.00 0.00 6.13
224 225 1.072648 TGACCACTTTTTAGGACCGGG 59.927 52.381 6.32 0.00 0.00 5.73
226 227 3.939066 AGATGACCACTTTTTAGGACCG 58.061 45.455 0.00 0.00 0.00 4.79
228 229 5.561679 AGGAAGATGACCACTTTTTAGGAC 58.438 41.667 0.00 0.00 0.00 3.85
237 238 0.976641 TTGCGAGGAAGATGACCACT 59.023 50.000 0.00 0.00 0.00 4.00
243 244 4.631377 TGTGAATACTTTGCGAGGAAGATG 59.369 41.667 0.00 0.00 0.00 2.90
252 253 6.724263 TGGCTAAATATGTGAATACTTTGCG 58.276 36.000 0.00 0.00 0.00 4.85
271 272 9.693739 TCCTATTCTTTTAATTGTTCATGGCTA 57.306 29.630 0.00 0.00 0.00 3.93
272 273 8.593945 TCCTATTCTTTTAATTGTTCATGGCT 57.406 30.769 0.00 0.00 0.00 4.75
273 274 9.087424 GTTCCTATTCTTTTAATTGTTCATGGC 57.913 33.333 0.00 0.00 0.00 4.40
286 287 9.936759 TGTTTTCACTTTTGTTCCTATTCTTTT 57.063 25.926 0.00 0.00 0.00 2.27
287 288 9.936759 TTGTTTTCACTTTTGTTCCTATTCTTT 57.063 25.926 0.00 0.00 0.00 2.52
288 289 9.936759 TTTGTTTTCACTTTTGTTCCTATTCTT 57.063 25.926 0.00 0.00 0.00 2.52
289 290 9.936759 TTTTGTTTTCACTTTTGTTCCTATTCT 57.063 25.926 0.00 0.00 0.00 2.40
350 351 9.179552 CGTGATCATTTTTCTAACAATGTTGAA 57.820 29.630 9.15 7.73 32.96 2.69
351 352 8.349245 ACGTGATCATTTTTCTAACAATGTTGA 58.651 29.630 9.15 1.74 32.96 3.18
352 353 8.506140 ACGTGATCATTTTTCTAACAATGTTG 57.494 30.769 9.15 0.00 32.96 3.33
365 366 7.763985 GGGGATTCAAAATTACGTGATCATTTT 59.236 33.333 0.00 0.00 31.62 1.82
366 367 7.264947 GGGGATTCAAAATTACGTGATCATTT 58.735 34.615 0.00 0.00 0.00 2.32
367 368 6.183360 GGGGGATTCAAAATTACGTGATCATT 60.183 38.462 0.00 0.00 0.00 2.57
368 369 5.301805 GGGGGATTCAAAATTACGTGATCAT 59.698 40.000 0.00 0.00 0.00 2.45
369 370 4.642885 GGGGGATTCAAAATTACGTGATCA 59.357 41.667 0.00 0.00 0.00 2.92
370 371 5.183014 GGGGGATTCAAAATTACGTGATC 57.817 43.478 0.00 0.00 0.00 2.92
396 397 4.679331 TGTATTTTCCTAAAAGGTGGGGG 58.321 43.478 0.00 0.00 36.53 5.40
397 398 6.673839 TTTGTATTTTCCTAAAAGGTGGGG 57.326 37.500 0.00 0.00 36.53 4.96
398 399 7.602265 CACATTTGTATTTTCCTAAAAGGTGGG 59.398 37.037 0.00 0.00 38.29 4.61
399 400 8.147704 ACACATTTGTATTTTCCTAAAAGGTGG 58.852 33.333 13.56 0.00 43.20 4.61
400 401 8.977505 CACACATTTGTATTTTCCTAAAAGGTG 58.022 33.333 9.01 9.01 44.00 4.00
401 402 8.700973 ACACACATTTGTATTTTCCTAAAAGGT 58.299 29.630 0.00 0.00 33.42 3.50
402 403 9.541143 AACACACATTTGTATTTTCCTAAAAGG 57.459 29.630 0.00 0.00 33.30 3.11
440 2037 3.124636 CACGATCCCCTAAAAGAAACACG 59.875 47.826 0.00 0.00 0.00 4.49
444 2041 3.713826 AGCACGATCCCCTAAAAGAAA 57.286 42.857 0.00 0.00 0.00 2.52
447 2044 4.783764 AAAAAGCACGATCCCCTAAAAG 57.216 40.909 0.00 0.00 0.00 2.27
527 2124 3.622060 AACTCCCAATCCACCGCCG 62.622 63.158 0.00 0.00 0.00 6.46
531 2128 0.407918 TTCCCAACTCCCAATCCACC 59.592 55.000 0.00 0.00 0.00 4.61
532 2129 1.545841 GTTCCCAACTCCCAATCCAC 58.454 55.000 0.00 0.00 0.00 4.02
538 2162 1.850755 GGAGGGTTCCCAACTCCCA 60.851 63.158 10.73 0.00 43.93 4.37
544 2168 1.850755 GAGGGTGGAGGGTTCCCAA 60.851 63.158 10.73 0.00 43.33 4.12
546 2170 3.015753 GGAGGGTGGAGGGTTCCC 61.016 72.222 0.00 0.00 43.33 3.97
550 2174 3.637544 ATGGGGAGGGTGGAGGGT 61.638 66.667 0.00 0.00 0.00 4.34
551 2175 2.774351 GATGGGGAGGGTGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
552 2176 3.164269 CGATGGGGAGGGTGGAGG 61.164 72.222 0.00 0.00 0.00 4.30
572 2271 7.312899 GGAGTTGTCTTGTCAGAAAAGAAAAA 58.687 34.615 7.46 2.31 33.66 1.94
573 2272 6.403200 CGGAGTTGTCTTGTCAGAAAAGAAAA 60.403 38.462 4.44 3.17 35.50 2.29
577 2276 4.119862 TCGGAGTTGTCTTGTCAGAAAAG 58.880 43.478 0.00 0.00 25.54 2.27
582 2281 2.996621 GGAATCGGAGTTGTCTTGTCAG 59.003 50.000 0.00 0.00 0.00 3.51
586 2285 4.829064 TTTTGGAATCGGAGTTGTCTTG 57.171 40.909 0.00 0.00 0.00 3.02
589 2288 3.756434 TCCATTTTGGAATCGGAGTTGTC 59.244 43.478 0.00 0.00 45.00 3.18
590 2289 3.761897 TCCATTTTGGAATCGGAGTTGT 58.238 40.909 0.00 0.00 45.00 3.32
618 2317 1.479730 GGGGCTATATGGCGGTAGTAC 59.520 57.143 4.85 0.00 42.84 2.73
619 2318 1.077498 TGGGGCTATATGGCGGTAGTA 59.923 52.381 4.85 0.00 42.84 1.82
620 2319 0.178915 TGGGGCTATATGGCGGTAGT 60.179 55.000 4.85 0.00 42.84 2.73
621 2320 1.204146 ATGGGGCTATATGGCGGTAG 58.796 55.000 4.85 0.00 42.84 3.18
635 2334 2.711009 TCTGCCCTTGAGTAATATGGGG 59.289 50.000 0.00 0.00 38.34 4.96
636 2335 3.808618 GCTCTGCCCTTGAGTAATATGGG 60.809 52.174 0.00 0.00 40.74 4.00
637 2336 3.406764 GCTCTGCCCTTGAGTAATATGG 58.593 50.000 0.00 0.00 34.30 2.74
638 2337 3.062763 CGCTCTGCCCTTGAGTAATATG 58.937 50.000 0.00 0.00 34.30 1.78
639 2338 2.037772 CCGCTCTGCCCTTGAGTAATAT 59.962 50.000 0.00 0.00 34.30 1.28
640 2339 1.412710 CCGCTCTGCCCTTGAGTAATA 59.587 52.381 0.00 0.00 34.30 0.98
641 2340 0.179000 CCGCTCTGCCCTTGAGTAAT 59.821 55.000 0.00 0.00 34.30 1.89
642 2341 0.902984 TCCGCTCTGCCCTTGAGTAA 60.903 55.000 0.00 0.00 34.30 2.24
647 2346 2.125350 GAGTCCGCTCTGCCCTTG 60.125 66.667 0.00 0.00 38.66 3.61
648 2347 3.394836 GGAGTCCGCTCTGCCCTT 61.395 66.667 0.00 0.00 41.38 3.95
659 2358 3.132467 GGAGTAATATATGGCGGGAGTCC 59.868 52.174 0.00 0.00 0.00 3.85
664 2363 2.418197 CCGTGGAGTAATATATGGCGGG 60.418 54.545 0.00 0.00 33.87 6.13
689 2389 0.035820 TAATATGGCGCGAATCCCCC 60.036 55.000 12.10 0.00 0.00 5.40
691 2391 1.803334 TGTAATATGGCGCGAATCCC 58.197 50.000 12.10 0.65 0.00 3.85
692 2392 3.000041 TGATGTAATATGGCGCGAATCC 59.000 45.455 12.10 1.12 0.00 3.01
695 2395 2.036604 TCCTGATGTAATATGGCGCGAA 59.963 45.455 12.10 0.00 0.00 4.70
698 2398 2.744202 CCTTCCTGATGTAATATGGCGC 59.256 50.000 0.00 0.00 0.00 6.53
776 2476 1.371389 GACCGGCCGATCGACATAC 60.371 63.158 30.73 0.00 0.00 2.39
922 2622 4.214327 CTCTTCCTCCGGCGGCTC 62.214 72.222 23.83 0.00 0.00 4.70
1017 2729 1.153549 GATGACGTCACCAGAGGCC 60.154 63.158 22.71 0.00 33.01 5.19
1170 2882 2.900273 GAGTAGGCGGACATGGCA 59.100 61.111 0.00 0.00 36.77 4.92
1212 2924 1.376037 CAGAACCTCGAACCAGGGC 60.376 63.158 0.00 0.00 37.96 5.19
1473 3197 2.342650 GCCGCTGCCCAGAAAATCA 61.343 57.895 0.00 0.00 0.00 2.57
1520 3244 1.407299 CGCAGAATTGGTGATCCCTCA 60.407 52.381 0.00 0.00 0.00 3.86
1521 3245 1.303309 CGCAGAATTGGTGATCCCTC 58.697 55.000 0.00 0.00 0.00 4.30
1715 3442 2.492449 CTTGAAGGAGGCGACGCTGA 62.492 60.000 20.77 0.00 0.00 4.26
1724 3451 2.125512 CGACGGCCTTGAAGGAGG 60.126 66.667 16.93 7.93 37.67 4.30
1755 3482 0.872021 GGCGTTCGATCAGCTGTAGG 60.872 60.000 14.67 3.98 0.00 3.18
1758 3485 2.507102 CGGCGTTCGATCAGCTGT 60.507 61.111 14.67 0.42 42.43 4.40
1784 3511 3.077359 GAGCTTTGTGGCATCAAGTAGT 58.923 45.455 9.56 0.00 34.17 2.73
1850 3577 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1851 3578 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1852 3579 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1853 3580 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1902 3629 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1903 3630 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1904 3631 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1905 3632 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1906 3633 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1922 3649 8.778059 TGGATTTTTACAATATACTCCCTCTGT 58.222 33.333 0.00 0.00 0.00 3.41
1923 3650 9.799106 ATGGATTTTTACAATATACTCCCTCTG 57.201 33.333 0.00 0.00 0.00 3.35
1961 3688 6.745116 TCGTTTGACAGAGAAATTAGACTGA 58.255 36.000 0.00 0.00 34.88 3.41
1978 3705 4.439057 AGTAAAGCAGTCAGTTCGTTTGA 58.561 39.130 0.00 0.00 0.00 2.69
2006 3733 5.817296 GGAGCACAGATACATACATTGTTCA 59.183 40.000 0.00 0.00 39.87 3.18
2018 3745 9.224267 ACATTCATAAATATGGAGCACAGATAC 57.776 33.333 0.84 0.00 34.50 2.24
2020 3747 7.940688 TGACATTCATAAATATGGAGCACAGAT 59.059 33.333 0.84 0.00 34.50 2.90
2023 3750 6.018016 CGTGACATTCATAAATATGGAGCACA 60.018 38.462 0.84 0.00 34.50 4.57
2027 3754 7.224557 TGACACGTGACATTCATAAATATGGAG 59.775 37.037 25.01 0.00 34.50 3.86
2028 3755 7.044798 TGACACGTGACATTCATAAATATGGA 58.955 34.615 25.01 0.00 34.50 3.41
2029 3756 7.245419 TGACACGTGACATTCATAAATATGG 57.755 36.000 25.01 0.00 34.50 2.74
2040 3767 3.686241 CCTGATGAATGACACGTGACATT 59.314 43.478 35.00 35.00 41.60 2.71
2041 3768 3.055891 TCCTGATGAATGACACGTGACAT 60.056 43.478 24.49 24.49 32.16 3.06
2042 3769 2.298729 TCCTGATGAATGACACGTGACA 59.701 45.455 25.01 23.44 0.00 3.58
2043 3770 2.959516 TCCTGATGAATGACACGTGAC 58.040 47.619 25.01 17.68 0.00 3.67
2044 3771 3.195396 TCATCCTGATGAATGACACGTGA 59.805 43.478 25.01 0.00 44.14 4.35
2045 3772 3.524541 TCATCCTGATGAATGACACGTG 58.475 45.455 15.48 15.48 44.14 4.49
2046 3773 3.196469 ACTCATCCTGATGAATGACACGT 59.804 43.478 10.78 1.62 46.10 4.49
2047 3774 3.790091 ACTCATCCTGATGAATGACACG 58.210 45.455 10.78 1.06 46.10 4.49
2048 3775 5.021033 AGACTCATCCTGATGAATGACAC 57.979 43.478 10.78 0.92 46.10 3.67
2049 3776 4.713321 TGAGACTCATCCTGATGAATGACA 59.287 41.667 10.78 6.88 46.10 3.58
2050 3777 5.049167 GTGAGACTCATCCTGATGAATGAC 58.951 45.833 8.73 2.08 46.10 3.06
2051 3778 4.100653 GGTGAGACTCATCCTGATGAATGA 59.899 45.833 8.73 0.00 46.10 2.57
2052 3779 4.101274 AGGTGAGACTCATCCTGATGAATG 59.899 45.833 19.63 3.60 46.10 2.67
2053 3780 4.101274 CAGGTGAGACTCATCCTGATGAAT 59.899 45.833 30.65 0.99 46.10 2.57
2054 3781 3.450096 CAGGTGAGACTCATCCTGATGAA 59.550 47.826 30.65 0.00 46.10 2.57
2055 3782 3.029570 CAGGTGAGACTCATCCTGATGA 58.970 50.000 30.65 9.35 42.75 2.92
2056 3783 2.483363 GCAGGTGAGACTCATCCTGATG 60.483 54.545 34.52 20.93 42.75 3.07
2057 3784 1.761784 GCAGGTGAGACTCATCCTGAT 59.238 52.381 34.52 12.05 42.75 2.90
2058 3785 1.189752 GCAGGTGAGACTCATCCTGA 58.810 55.000 34.52 6.15 42.75 3.86
2059 3786 1.193323 AGCAGGTGAGACTCATCCTG 58.807 55.000 30.33 30.33 42.87 3.86
2060 3787 2.836636 TAGCAGGTGAGACTCATCCT 57.163 50.000 12.25 14.74 31.26 3.24
2061 3788 3.244044 GGATTAGCAGGTGAGACTCATCC 60.244 52.174 12.25 12.86 0.00 3.51
2062 3789 3.551863 CGGATTAGCAGGTGAGACTCATC 60.552 52.174 8.73 8.21 0.00 2.92
2063 3790 2.363680 CGGATTAGCAGGTGAGACTCAT 59.636 50.000 8.73 0.00 0.00 2.90
2064 3791 1.751351 CGGATTAGCAGGTGAGACTCA 59.249 52.381 0.00 0.00 0.00 3.41
2065 3792 1.751924 ACGGATTAGCAGGTGAGACTC 59.248 52.381 0.00 0.00 0.00 3.36
2066 3793 1.478510 CACGGATTAGCAGGTGAGACT 59.521 52.381 0.00 0.00 32.23 3.24
2067 3794 1.476891 TCACGGATTAGCAGGTGAGAC 59.523 52.381 0.00 0.00 34.71 3.36
2068 3795 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
2070 3797 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
2071 3798 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
2072 3799 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
2073 3800 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
2074 3801 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
2075 3802 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
2076 3803 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
2077 3804 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
2078 3805 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
2079 3806 1.645710 AAGACCAGGTCTCACGGATT 58.354 50.000 23.17 1.89 42.59 3.01
2080 3807 2.526888 TAAGACCAGGTCTCACGGAT 57.473 50.000 23.17 8.49 42.59 4.18
2081 3808 2.526888 ATAAGACCAGGTCTCACGGA 57.473 50.000 23.17 6.58 42.59 4.69
2082 3809 3.552875 TCTATAAGACCAGGTCTCACGG 58.447 50.000 23.17 13.19 42.59 4.94
2083 3810 5.776173 ATTCTATAAGACCAGGTCTCACG 57.224 43.478 23.17 11.45 42.59 4.35
2084 3811 8.794335 AAAAATTCTATAAGACCAGGTCTCAC 57.206 34.615 23.17 0.00 42.59 3.51
2106 3833 3.832527 CTGACAGAAGGGAAGGGAAAAA 58.167 45.455 0.00 0.00 0.00 1.94
2107 3834 2.489073 GCTGACAGAAGGGAAGGGAAAA 60.489 50.000 6.65 0.00 0.00 2.29
2108 3835 1.073923 GCTGACAGAAGGGAAGGGAAA 59.926 52.381 6.65 0.00 0.00 3.13
2109 3836 0.693049 GCTGACAGAAGGGAAGGGAA 59.307 55.000 6.65 0.00 0.00 3.97
2110 3837 0.473694 TGCTGACAGAAGGGAAGGGA 60.474 55.000 6.65 0.00 0.00 4.20
2111 3838 0.401738 TTGCTGACAGAAGGGAAGGG 59.598 55.000 6.65 0.00 0.00 3.95
2112 3839 2.276732 TTTGCTGACAGAAGGGAAGG 57.723 50.000 6.65 0.00 0.00 3.46
2158 3885 2.288395 ACGCCAAAAGAAGCCAAAGATG 60.288 45.455 0.00 0.00 0.00 2.90
2159 3886 1.963515 ACGCCAAAAGAAGCCAAAGAT 59.036 42.857 0.00 0.00 0.00 2.40
2160 3887 1.398692 ACGCCAAAAGAAGCCAAAGA 58.601 45.000 0.00 0.00 0.00 2.52
2161 3888 1.860326 CAACGCCAAAAGAAGCCAAAG 59.140 47.619 0.00 0.00 0.00 2.77
2162 3889 1.933247 CAACGCCAAAAGAAGCCAAA 58.067 45.000 0.00 0.00 0.00 3.28
2163 3890 0.529555 GCAACGCCAAAAGAAGCCAA 60.530 50.000 0.00 0.00 0.00 4.52
2164 3891 1.067250 GCAACGCCAAAAGAAGCCA 59.933 52.632 0.00 0.00 0.00 4.75
2165 3892 0.596082 TAGCAACGCCAAAAGAAGCC 59.404 50.000 0.00 0.00 0.00 4.35
2166 3893 2.095263 TGATAGCAACGCCAAAAGAAGC 60.095 45.455 0.00 0.00 0.00 3.86
2167 3894 3.829886 TGATAGCAACGCCAAAAGAAG 57.170 42.857 0.00 0.00 0.00 2.85
2168 3895 4.782019 ATTGATAGCAACGCCAAAAGAA 57.218 36.364 0.00 0.00 36.72 2.52
2185 3912 7.678837 AGGTGATTTTTCAGGCAATTTATTGA 58.321 30.769 6.64 0.00 40.14 2.57
2248 3975 3.275617 AACTGTGGTCAACTTGCTGTA 57.724 42.857 0.00 0.00 0.00 2.74
2289 4016 5.230097 GTCTCGTTCAAAAAGAAAAAGGCTG 59.770 40.000 0.00 0.00 38.13 4.85
2292 4019 7.575332 TTTGTCTCGTTCAAAAAGAAAAAGG 57.425 32.000 0.00 0.00 38.13 3.11
2321 4048 0.818938 TGAATGTTAGGCGCCTCGTA 59.181 50.000 36.73 20.63 0.00 3.43
2373 4100 5.221521 TGCAGACATTACTCATCAGGGATAC 60.222 44.000 0.00 0.00 0.00 2.24
2391 4118 3.564644 CCCTGATTCAGATCATTGCAGAC 59.435 47.826 15.36 0.00 41.28 3.51
2445 4172 5.390567 CCAACAACGTTCTAGGATTAGTTGC 60.391 44.000 13.71 0.00 41.62 4.17
2448 4175 4.323257 CCCCAACAACGTTCTAGGATTAGT 60.323 45.833 0.00 0.00 0.00 2.24
2461 4188 4.461081 TCAGGATTTATTTCCCCAACAACG 59.539 41.667 0.00 0.00 36.35 4.10
2485 4212 2.275318 GTAGCAGCCAAGTTAGCAGAG 58.725 52.381 0.00 0.00 0.00 3.35
2486 4213 1.404181 CGTAGCAGCCAAGTTAGCAGA 60.404 52.381 0.00 0.00 0.00 4.26
2512 4241 3.748048 CCGGATTCGCTGATAATTGTGAT 59.252 43.478 0.00 0.00 34.56 3.06
2523 4252 0.319900 ATTCGGATCCGGATTCGCTG 60.320 55.000 35.75 20.19 39.58 5.18
2527 4256 3.887621 TCCATATTCGGATCCGGATTC 57.112 47.619 32.36 16.68 38.72 2.52
2528 4257 3.326588 TGTTCCATATTCGGATCCGGATT 59.673 43.478 32.36 19.35 38.72 3.01
2529 4258 2.903784 TGTTCCATATTCGGATCCGGAT 59.096 45.455 30.26 30.26 41.10 4.18
2530 4259 2.036733 GTGTTCCATATTCGGATCCGGA 59.963 50.000 32.79 27.00 40.25 5.14
2531 4260 2.413837 GTGTTCCATATTCGGATCCGG 58.586 52.381 32.79 16.68 40.25 5.14
2532 4261 2.037251 AGGTGTTCCATATTCGGATCCG 59.963 50.000 28.62 28.62 34.19 4.18
2533 4262 3.071023 TCAGGTGTTCCATATTCGGATCC 59.929 47.826 0.00 0.00 34.19 3.36
2534 4263 4.336889 TCAGGTGTTCCATATTCGGATC 57.663 45.455 0.00 0.00 34.19 3.36
2535 4264 4.451900 GTTCAGGTGTTCCATATTCGGAT 58.548 43.478 0.00 0.00 34.19 4.18
2536 4265 3.370103 GGTTCAGGTGTTCCATATTCGGA 60.370 47.826 0.00 0.00 35.89 4.55
2537 4266 2.943033 GGTTCAGGTGTTCCATATTCGG 59.057 50.000 0.00 0.00 35.89 4.30
2538 4267 3.623060 CAGGTTCAGGTGTTCCATATTCG 59.377 47.826 0.00 0.00 35.89 3.34
2546 4275 3.541632 TCAAAGACAGGTTCAGGTGTTC 58.458 45.455 0.00 0.00 0.00 3.18
2606 4335 1.202290 GCGGGACATTGGCAAATACAG 60.202 52.381 3.01 0.00 0.00 2.74
2609 4338 2.171659 TCTAGCGGGACATTGGCAAATA 59.828 45.455 3.01 0.00 0.00 1.40
2610 4339 1.064758 TCTAGCGGGACATTGGCAAAT 60.065 47.619 3.01 0.00 0.00 2.32
2611 4340 0.326595 TCTAGCGGGACATTGGCAAA 59.673 50.000 3.01 0.00 0.00 3.68
2612 4341 0.546122 ATCTAGCGGGACATTGGCAA 59.454 50.000 0.68 0.68 0.00 4.52
2613 4342 0.546122 AATCTAGCGGGACATTGGCA 59.454 50.000 0.00 0.00 0.00 4.92
2614 4343 0.947244 CAATCTAGCGGGACATTGGC 59.053 55.000 0.00 0.00 0.00 4.52
2615 4344 2.620251 TCAATCTAGCGGGACATTGG 57.380 50.000 1.13 0.00 0.00 3.16
2616 4345 3.499918 GGAATCAATCTAGCGGGACATTG 59.500 47.826 0.00 0.00 0.00 2.82
2617 4346 3.136443 TGGAATCAATCTAGCGGGACATT 59.864 43.478 0.00 0.00 0.00 2.71
2618 4347 2.705658 TGGAATCAATCTAGCGGGACAT 59.294 45.455 0.00 0.00 0.00 3.06
2619 4348 2.115427 TGGAATCAATCTAGCGGGACA 58.885 47.619 0.00 0.00 0.00 4.02
2621 4350 2.705658 ACATGGAATCAATCTAGCGGGA 59.294 45.455 0.00 0.00 0.00 5.14
2622 4351 2.810274 CACATGGAATCAATCTAGCGGG 59.190 50.000 0.00 0.00 0.00 6.13
2644 4470 1.406898 CTCAGCGACTATTGGCAGAGA 59.593 52.381 3.99 0.00 43.12 3.10
2656 4505 5.741388 ATGGAAATTACAATCTCAGCGAC 57.259 39.130 0.00 0.00 0.00 5.19
2712 4561 7.664318 GGAAAGTGTAAGAAGAGGATTTGGTTA 59.336 37.037 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.