Multiple sequence alignment - TraesCS6B01G433700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G433700 chr6B 100.000 2696 0 0 1 2696 702369232 702371927 0.000000e+00 4979
1 TraesCS6B01G433700 chr6D 84.561 2118 133 84 121 2174 460846025 460848012 0.000000e+00 1921
2 TraesCS6B01G433700 chr6D 82.082 413 46 9 2203 2615 460848013 460848397 7.200000e-86 327
3 TraesCS6B01G433700 chr6D 76.400 250 50 6 1027 1269 460805439 460805686 2.820000e-25 126
4 TraesCS6B01G433700 chr6A 84.772 1379 93 60 345 1701 607407707 607408990 0.000000e+00 1275


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G433700 chr6B 702369232 702371927 2695 False 4979 4979 100.0000 1 2696 1 chr6B.!!$F1 2695
1 TraesCS6B01G433700 chr6D 460846025 460848397 2372 False 1124 1921 83.3215 121 2615 2 chr6D.!!$F2 2494
2 TraesCS6B01G433700 chr6A 607407707 607408990 1283 False 1275 1275 84.7720 345 1701 1 chr6A.!!$F1 1356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.03563 GCCTCACCAGATTCTGCACT 60.036 55.0 8.23 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1965 0.029035 CGCTGCTACTACTACCACCG 59.971 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.965470 ACCCTACCTTGTCCAAAGTTT 57.035 42.857 0.00 0.00 0.00 2.66
21 22 3.562182 ACCCTACCTTGTCCAAAGTTTG 58.438 45.455 8.73 8.73 0.00 2.93
33 34 4.935352 CCAAAGTTTGGTTCTCCATGAA 57.065 40.909 24.17 0.00 45.93 2.57
34 35 5.473066 CCAAAGTTTGGTTCTCCATGAAT 57.527 39.130 24.17 0.00 45.93 2.57
35 36 5.232463 CCAAAGTTTGGTTCTCCATGAATG 58.768 41.667 24.17 0.00 45.93 2.67
36 37 5.010922 CCAAAGTTTGGTTCTCCATGAATGA 59.989 40.000 24.17 0.00 45.93 2.57
37 38 6.462768 CCAAAGTTTGGTTCTCCATGAATGAA 60.463 38.462 24.17 0.00 45.93 2.57
38 39 5.972107 AGTTTGGTTCTCCATGAATGAAG 57.028 39.130 0.00 0.00 43.91 3.02
39 40 5.634118 AGTTTGGTTCTCCATGAATGAAGA 58.366 37.500 0.00 0.00 43.91 2.87
40 41 6.251471 AGTTTGGTTCTCCATGAATGAAGAT 58.749 36.000 0.00 0.00 43.91 2.40
41 42 6.152323 AGTTTGGTTCTCCATGAATGAAGATG 59.848 38.462 0.00 0.00 43.91 2.90
42 43 4.529897 TGGTTCTCCATGAATGAAGATGG 58.470 43.478 0.00 0.00 40.61 3.51
43 44 3.317430 GGTTCTCCATGAATGAAGATGGC 59.683 47.826 0.00 0.00 39.29 4.40
44 45 3.937778 TCTCCATGAATGAAGATGGCA 57.062 42.857 0.00 0.00 39.29 4.92
45 46 4.239428 TCTCCATGAATGAAGATGGCAA 57.761 40.909 0.00 0.00 39.29 4.52
46 47 4.800023 TCTCCATGAATGAAGATGGCAAT 58.200 39.130 0.00 0.00 39.29 3.56
47 48 4.583073 TCTCCATGAATGAAGATGGCAATG 59.417 41.667 0.00 0.00 39.29 2.82
48 49 4.283337 TCCATGAATGAAGATGGCAATGT 58.717 39.130 0.00 0.00 39.29 2.71
49 50 5.447757 TCCATGAATGAAGATGGCAATGTA 58.552 37.500 0.00 0.00 39.29 2.29
50 51 6.072649 TCCATGAATGAAGATGGCAATGTAT 58.927 36.000 0.00 0.00 39.29 2.29
51 52 6.551975 TCCATGAATGAAGATGGCAATGTATT 59.448 34.615 0.00 0.00 39.29 1.89
52 53 7.070198 TCCATGAATGAAGATGGCAATGTATTT 59.930 33.333 0.00 0.00 39.29 1.40
53 54 7.713507 CCATGAATGAAGATGGCAATGTATTTT 59.286 33.333 0.00 0.00 33.01 1.82
54 55 9.104965 CATGAATGAAGATGGCAATGTATTTTT 57.895 29.630 0.00 0.00 0.00 1.94
55 56 8.481974 TGAATGAAGATGGCAATGTATTTTTG 57.518 30.769 0.00 0.00 0.00 2.44
56 57 7.549842 TGAATGAAGATGGCAATGTATTTTTGG 59.450 33.333 0.00 0.00 0.00 3.28
57 58 5.177326 TGAAGATGGCAATGTATTTTTGGC 58.823 37.500 0.00 3.32 46.54 4.52
58 59 4.141233 AGATGGCAATGTATTTTTGGCC 57.859 40.909 0.00 0.00 45.99 5.36
59 60 3.776417 AGATGGCAATGTATTTTTGGCCT 59.224 39.130 3.32 0.00 45.99 5.19
60 61 3.608316 TGGCAATGTATTTTTGGCCTC 57.392 42.857 3.32 0.00 45.99 4.70
61 62 2.902486 TGGCAATGTATTTTTGGCCTCA 59.098 40.909 3.32 0.00 45.99 3.86
62 63 3.261580 GGCAATGTATTTTTGGCCTCAC 58.738 45.455 3.32 0.00 42.13 3.51
63 64 3.261580 GCAATGTATTTTTGGCCTCACC 58.738 45.455 3.32 0.00 39.84 4.02
72 73 1.300963 TGGCCTCACCAGATTCTGC 59.699 57.895 3.32 0.00 46.36 4.26
73 74 1.300963 GGCCTCACCAGATTCTGCA 59.699 57.895 8.23 0.00 38.86 4.41
74 75 1.028868 GGCCTCACCAGATTCTGCAC 61.029 60.000 8.23 0.00 38.86 4.57
75 76 0.035630 GCCTCACCAGATTCTGCACT 60.036 55.000 8.23 0.00 0.00 4.40
76 77 1.735386 CCTCACCAGATTCTGCACTG 58.265 55.000 8.23 3.50 0.00 3.66
77 78 1.085091 CTCACCAGATTCTGCACTGC 58.915 55.000 8.23 0.00 33.40 4.40
78 79 0.397564 TCACCAGATTCTGCACTGCA 59.602 50.000 8.23 3.11 36.92 4.41
79 80 0.520404 CACCAGATTCTGCACTGCAC 59.480 55.000 8.23 0.00 33.79 4.57
80 81 0.109153 ACCAGATTCTGCACTGCACA 59.891 50.000 8.23 0.00 33.79 4.57
81 82 1.271762 ACCAGATTCTGCACTGCACAT 60.272 47.619 8.23 0.00 33.79 3.21
82 83 1.132453 CCAGATTCTGCACTGCACATG 59.868 52.381 8.23 0.00 33.79 3.21
83 84 0.809385 AGATTCTGCACTGCACATGC 59.191 50.000 10.66 10.66 43.68 4.06
95 96 1.973138 GCACATGCACACAATGTCTC 58.027 50.000 0.00 0.00 41.59 3.36
96 97 1.267533 GCACATGCACACAATGTCTCA 59.732 47.619 0.00 0.00 41.59 3.27
97 98 2.094906 GCACATGCACACAATGTCTCAT 60.095 45.455 0.00 0.00 41.59 2.90
98 99 3.613193 GCACATGCACACAATGTCTCATT 60.613 43.478 0.00 0.00 41.59 2.57
99 100 4.552355 CACATGCACACAATGTCTCATTT 58.448 39.130 0.00 0.00 0.00 2.32
100 101 4.986034 CACATGCACACAATGTCTCATTTT 59.014 37.500 0.00 0.00 0.00 1.82
101 102 4.986034 ACATGCACACAATGTCTCATTTTG 59.014 37.500 0.00 6.96 0.00 2.44
102 103 3.382855 TGCACACAATGTCTCATTTTGC 58.617 40.909 8.05 9.56 0.00 3.68
103 104 3.068448 TGCACACAATGTCTCATTTTGCT 59.932 39.130 15.23 2.48 0.00 3.91
104 105 4.053295 GCACACAATGTCTCATTTTGCTT 58.947 39.130 8.05 0.00 0.00 3.91
105 106 4.084745 GCACACAATGTCTCATTTTGCTTG 60.085 41.667 8.05 3.18 0.00 4.01
106 107 4.053295 ACACAATGTCTCATTTTGCTTGC 58.947 39.130 8.05 0.00 0.00 4.01
107 108 4.202182 ACACAATGTCTCATTTTGCTTGCT 60.202 37.500 8.05 0.00 0.00 3.91
108 109 4.748102 CACAATGTCTCATTTTGCTTGCTT 59.252 37.500 0.00 0.00 0.00 3.91
109 110 4.748102 ACAATGTCTCATTTTGCTTGCTTG 59.252 37.500 0.00 0.00 0.00 4.01
110 111 4.595762 ATGTCTCATTTTGCTTGCTTGT 57.404 36.364 0.00 0.00 0.00 3.16
111 112 3.708890 TGTCTCATTTTGCTTGCTTGTG 58.291 40.909 0.00 0.00 0.00 3.33
112 113 3.130869 TGTCTCATTTTGCTTGCTTGTGT 59.869 39.130 0.00 0.00 0.00 3.72
113 114 4.114794 GTCTCATTTTGCTTGCTTGTGTT 58.885 39.130 0.00 0.00 0.00 3.32
114 115 4.207841 GTCTCATTTTGCTTGCTTGTGTTC 59.792 41.667 0.00 0.00 0.00 3.18
115 116 3.456280 TCATTTTGCTTGCTTGTGTTCC 58.544 40.909 0.00 0.00 0.00 3.62
116 117 3.132646 TCATTTTGCTTGCTTGTGTTCCT 59.867 39.130 0.00 0.00 0.00 3.36
117 118 3.608316 TTTTGCTTGCTTGTGTTCCTT 57.392 38.095 0.00 0.00 0.00 3.36
118 119 2.582728 TTGCTTGCTTGTGTTCCTTG 57.417 45.000 0.00 0.00 0.00 3.61
119 120 0.102844 TGCTTGCTTGTGTTCCTTGC 59.897 50.000 0.00 0.00 0.00 4.01
124 125 0.595095 GCTTGTGTTCCTTGCCTCTG 59.405 55.000 0.00 0.00 0.00 3.35
155 156 6.542735 GGAGATTATCTTTTTCGCTTTAGGGT 59.457 38.462 0.00 0.00 0.00 4.34
163 164 3.478857 TTCGCTTTAGGGTTGTCAGAA 57.521 42.857 0.00 0.00 0.00 3.02
173 174 2.092375 GGGTTGTCAGAAAGATAGGGGG 60.092 54.545 0.00 0.00 0.00 5.40
187 188 0.335019 AGGGGGCATTGGTTAAGGTC 59.665 55.000 0.00 0.00 0.00 3.85
195 196 3.621715 GCATTGGTTAAGGTCGTCTAAGG 59.378 47.826 0.00 0.00 0.00 2.69
196 197 3.967332 TTGGTTAAGGTCGTCTAAGGG 57.033 47.619 0.00 0.00 0.00 3.95
197 198 1.551883 TGGTTAAGGTCGTCTAAGGGC 59.448 52.381 0.00 0.00 0.00 5.19
222 223 2.582728 TTTGTTTGCCTGTTGCTCTG 57.417 45.000 0.00 0.00 42.00 3.35
229 230 0.747283 GCCTGTTGCTCTGATGGAGG 60.747 60.000 0.00 0.00 42.08 4.30
236 237 1.005097 TGCTCTGATGGAGGTGCATTT 59.995 47.619 0.00 0.00 42.08 2.32
237 238 1.404391 GCTCTGATGGAGGTGCATTTG 59.596 52.381 0.00 0.00 42.08 2.32
238 239 2.719739 CTCTGATGGAGGTGCATTTGT 58.280 47.619 0.00 0.00 38.35 2.83
250 255 2.421073 GTGCATTTGTGAGCTGCTATCA 59.579 45.455 0.15 1.82 36.84 2.15
266 271 6.931281 GCTGCTATCAACCTATCATTTCTACA 59.069 38.462 0.00 0.00 0.00 2.74
267 272 7.117523 GCTGCTATCAACCTATCATTTCTACAG 59.882 40.741 0.00 0.00 0.00 2.74
269 274 8.486210 TGCTATCAACCTATCATTTCTACAGTT 58.514 33.333 0.00 0.00 0.00 3.16
275 280 9.214957 CAACCTATCATTTCTACAGTTTGTACA 57.785 33.333 0.00 0.00 0.00 2.90
277 282 9.216117 ACCTATCATTTCTACAGTTTGTACAAC 57.784 33.333 8.07 4.01 0.00 3.32
278 283 9.436957 CCTATCATTTCTACAGTTTGTACAACT 57.563 33.333 8.07 6.35 0.00 3.16
322 327 0.464036 TATGGCCAAGTAGCACTCCG 59.536 55.000 10.96 0.00 0.00 4.63
326 331 0.459759 GCCAAGTAGCACTCCGTACC 60.460 60.000 0.00 0.00 0.00 3.34
329 334 1.135083 CAAGTAGCACTCCGTACCCTG 60.135 57.143 0.00 0.00 0.00 4.45
334 339 1.154197 GCACTCCGTACCCTGAAAAC 58.846 55.000 0.00 0.00 0.00 2.43
342 347 1.456923 GTACCCTGAAAACGTACGTGC 59.543 52.381 23.57 14.78 0.00 5.34
343 348 0.881600 ACCCTGAAAACGTACGTGCC 60.882 55.000 23.57 14.12 0.00 5.01
344 349 0.601841 CCCTGAAAACGTACGTGCCT 60.602 55.000 23.57 9.34 0.00 4.75
345 350 1.337074 CCCTGAAAACGTACGTGCCTA 60.337 52.381 23.57 8.49 0.00 3.93
346 351 1.723003 CCTGAAAACGTACGTGCCTAC 59.277 52.381 23.57 12.20 0.00 3.18
347 352 1.723003 CTGAAAACGTACGTGCCTACC 59.277 52.381 23.57 8.85 0.00 3.18
348 353 1.340889 TGAAAACGTACGTGCCTACCT 59.659 47.619 23.57 0.29 0.00 3.08
349 354 1.723003 GAAAACGTACGTGCCTACCTG 59.277 52.381 23.57 0.00 0.00 4.00
350 355 0.668401 AAACGTACGTGCCTACCTGC 60.668 55.000 23.57 0.00 0.00 4.85
351 356 1.530013 AACGTACGTGCCTACCTGCT 61.530 55.000 23.57 0.00 0.00 4.24
352 357 0.677731 ACGTACGTGCCTACCTGCTA 60.678 55.000 22.14 0.00 0.00 3.49
353 358 0.248377 CGTACGTGCCTACCTGCTAC 60.248 60.000 7.22 0.00 0.00 3.58
354 359 0.101939 GTACGTGCCTACCTGCTACC 59.898 60.000 0.00 0.00 0.00 3.18
355 360 1.378882 TACGTGCCTACCTGCTACCG 61.379 60.000 0.00 0.00 0.00 4.02
412 420 2.216898 GATGAAGCAGCACTCCATACC 58.783 52.381 0.00 0.00 0.00 2.73
413 421 0.253044 TGAAGCAGCACTCCATACCC 59.747 55.000 0.00 0.00 0.00 3.69
447 455 2.663879 GCATGCTTCACGTTCAGAGTTG 60.664 50.000 11.37 0.00 0.00 3.16
467 477 0.316204 GGAAATTGTGTGCTGCTGCT 59.684 50.000 17.00 0.00 40.48 4.24
472 482 3.285215 GTGTGCTGCTGCTGCTGT 61.285 61.111 27.67 0.00 39.81 4.40
475 485 3.973516 TGCTGCTGCTGCTGTTGC 61.974 61.111 27.67 16.48 39.81 4.17
476 486 4.719369 GCTGCTGCTGCTGTTGCC 62.719 66.667 22.10 3.77 39.81 4.52
564 581 0.178950 TCTCCACTCCACTGAGCTGT 60.179 55.000 0.00 0.00 42.74 4.40
600 617 3.135457 CAGCCCGTGCATGCATGA 61.135 61.111 35.91 12.48 41.13 3.07
601 618 2.827190 AGCCCGTGCATGCATGAG 60.827 61.111 35.91 26.75 41.13 2.90
602 619 4.564116 GCCCGTGCATGCATGAGC 62.564 66.667 35.91 31.75 38.29 4.26
603 620 2.827190 CCCGTGCATGCATGAGCT 60.827 61.111 35.91 0.00 42.74 4.09
604 621 1.524393 CCCGTGCATGCATGAGCTA 60.524 57.895 35.91 9.86 42.74 3.32
605 622 1.504647 CCCGTGCATGCATGAGCTAG 61.505 60.000 35.91 20.68 42.74 3.42
606 623 1.278937 CGTGCATGCATGAGCTAGC 59.721 57.895 31.95 14.03 42.74 3.42
607 624 1.158484 CGTGCATGCATGAGCTAGCT 61.158 55.000 31.95 19.45 42.74 3.32
608 625 1.870993 CGTGCATGCATGAGCTAGCTA 60.871 52.381 31.95 6.79 42.74 3.32
609 626 1.799403 GTGCATGCATGAGCTAGCTAG 59.201 52.381 30.64 16.84 42.74 3.42
650 667 1.730772 GCTGAGTGAGCTACGTGAGTG 60.731 57.143 0.00 0.00 44.15 3.51
662 682 3.595691 GTGAGTGGTCACCTCACAG 57.404 57.895 10.68 0.00 46.58 3.66
702 726 4.570663 CCCGGACGGCGACAGATC 62.571 72.222 16.62 0.00 0.00 2.75
711 735 0.317436 GGCGACAGATCAGCTACTCG 60.317 60.000 0.00 0.00 0.00 4.18
857 926 1.300542 GCCACTCCGCTAGCTCATC 60.301 63.158 13.93 0.00 0.00 2.92
858 927 1.743321 GCCACTCCGCTAGCTCATCT 61.743 60.000 13.93 0.00 0.00 2.90
859 928 0.313672 CCACTCCGCTAGCTCATCTC 59.686 60.000 13.93 0.00 0.00 2.75
860 929 0.313672 CACTCCGCTAGCTCATCTCC 59.686 60.000 13.93 0.00 0.00 3.71
861 930 0.184933 ACTCCGCTAGCTCATCTCCT 59.815 55.000 13.93 0.00 0.00 3.69
862 931 0.881118 CTCCGCTAGCTCATCTCCTC 59.119 60.000 13.93 0.00 0.00 3.71
863 932 0.886938 TCCGCTAGCTCATCTCCTCG 60.887 60.000 13.93 0.00 0.00 4.63
864 933 1.578926 CGCTAGCTCATCTCCTCGG 59.421 63.158 13.93 0.00 0.00 4.63
865 934 1.288752 GCTAGCTCATCTCCTCGGC 59.711 63.158 7.70 0.00 0.00 5.54
866 935 1.178534 GCTAGCTCATCTCCTCGGCT 61.179 60.000 7.70 0.00 37.08 5.52
867 936 1.884497 GCTAGCTCATCTCCTCGGCTA 60.884 57.143 7.70 0.00 34.88 3.93
868 937 2.722094 CTAGCTCATCTCCTCGGCTAT 58.278 52.381 0.00 0.00 35.41 2.97
869 938 2.889170 AGCTCATCTCCTCGGCTATA 57.111 50.000 0.00 0.00 0.00 1.31
870 939 3.380471 AGCTCATCTCCTCGGCTATAT 57.620 47.619 0.00 0.00 0.00 0.86
871 940 4.511786 AGCTCATCTCCTCGGCTATATA 57.488 45.455 0.00 0.00 0.00 0.86
872 941 4.460263 AGCTCATCTCCTCGGCTATATAG 58.540 47.826 5.30 5.30 0.00 1.31
951 1020 3.145286 AGCTCAAGTTTCTTTCAGCTCC 58.855 45.455 6.81 0.00 31.46 4.70
952 1021 2.227626 GCTCAAGTTTCTTTCAGCTCCC 59.772 50.000 0.00 0.00 0.00 4.30
953 1022 2.816672 CTCAAGTTTCTTTCAGCTCCCC 59.183 50.000 0.00 0.00 0.00 4.81
955 1024 1.450360 AGTTTCTTTCAGCTCCCCCT 58.550 50.000 0.00 0.00 0.00 4.79
956 1025 2.632537 AGTTTCTTTCAGCTCCCCCTA 58.367 47.619 0.00 0.00 0.00 3.53
959 1028 3.652057 TTCTTTCAGCTCCCCCTATTG 57.348 47.619 0.00 0.00 0.00 1.90
960 1029 2.562296 TCTTTCAGCTCCCCCTATTGT 58.438 47.619 0.00 0.00 0.00 2.71
961 1030 2.239654 TCTTTCAGCTCCCCCTATTGTG 59.760 50.000 0.00 0.00 0.00 3.33
962 1031 0.255890 TTCAGCTCCCCCTATTGTGC 59.744 55.000 0.00 0.00 0.00 4.57
963 1032 1.152881 CAGCTCCCCCTATTGTGCC 60.153 63.158 0.00 0.00 0.00 5.01
964 1033 1.308216 AGCTCCCCCTATTGTGCCT 60.308 57.895 0.00 0.00 0.00 4.75
965 1034 1.152881 GCTCCCCCTATTGTGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
966 1035 1.926426 GCTCCCCCTATTGTGCCTGT 61.926 60.000 0.00 0.00 0.00 4.00
967 1036 0.107017 CTCCCCCTATTGTGCCTGTG 60.107 60.000 0.00 0.00 0.00 3.66
1020 1093 2.821810 GGGAAGAAGCAGAGCGGC 60.822 66.667 0.00 0.00 0.00 6.53
1021 1094 2.046892 GGAAGAAGCAGAGCGGCA 60.047 61.111 1.45 0.00 35.83 5.69
1022 1095 1.672356 GGAAGAAGCAGAGCGGCAA 60.672 57.895 1.45 0.00 35.83 4.52
1047 1135 4.329545 GTGGAGAAGGTGGCGGCA 62.330 66.667 7.97 7.97 0.00 5.69
1062 1150 1.448717 GGCAAGGGAGTTCTCGCTC 60.449 63.158 17.30 8.03 34.89 5.03
1103 1191 4.920112 CCACGGGTGCACGGACAA 62.920 66.667 11.45 0.00 38.39 3.18
1299 1387 4.168291 GAGCGCAGGAAGGGGGAG 62.168 72.222 11.47 0.00 0.00 4.30
1304 1392 4.038804 CAGGAAGGGGGAGGGGGA 62.039 72.222 0.00 0.00 0.00 4.81
1305 1393 3.711782 AGGAAGGGGGAGGGGGAG 61.712 72.222 0.00 0.00 0.00 4.30
1306 1394 4.845307 GGAAGGGGGAGGGGGAGG 62.845 77.778 0.00 0.00 0.00 4.30
1307 1395 3.707189 GAAGGGGGAGGGGGAGGA 61.707 72.222 0.00 0.00 0.00 3.71
1308 1396 4.040198 AAGGGGGAGGGGGAGGAC 62.040 72.222 0.00 0.00 0.00 3.85
1410 1498 4.446413 CGTCACCAGTACGGGGGC 62.446 72.222 16.82 8.64 40.64 5.80
1705 1793 1.381928 GGGCTACTGATCGGTCGACA 61.382 60.000 18.91 0.00 0.00 4.35
1707 1795 0.733729 GCTACTGATCGGTCGACAGT 59.266 55.000 18.91 21.85 45.06 3.55
1709 1797 1.738350 CTACTGATCGGTCGACAGTGT 59.262 52.381 24.36 13.12 43.33 3.55
1710 1798 0.241213 ACTGATCGGTCGACAGTGTG 59.759 55.000 18.91 8.26 42.18 3.82
1711 1799 0.241213 CTGATCGGTCGACAGTGTGT 59.759 55.000 18.91 1.85 0.00 3.72
1712 1800 0.039527 TGATCGGTCGACAGTGTGTG 60.040 55.000 18.91 0.00 0.00 3.82
1713 1801 0.240145 GATCGGTCGACAGTGTGTGA 59.760 55.000 18.91 0.00 0.00 3.58
1715 1803 1.660575 CGGTCGACAGTGTGTGACC 60.661 63.158 24.78 24.78 41.17 4.02
1716 1804 1.660575 GGTCGACAGTGTGTGACCG 60.661 63.158 22.07 10.82 38.12 4.79
1717 1805 2.027024 TCGACAGTGTGTGACCGC 59.973 61.111 0.00 0.00 0.00 5.68
1718 1806 2.027605 CGACAGTGTGTGACCGCT 59.972 61.111 0.00 0.00 0.00 5.52
1719 1807 2.016704 CGACAGTGTGTGACCGCTC 61.017 63.158 0.00 0.00 0.00 5.03
1721 1809 2.335011 CAGTGTGTGACCGCTCGA 59.665 61.111 0.00 0.00 0.00 4.04
1724 1812 3.588906 TGTGTGACCGCTCGACGT 61.589 61.111 0.00 0.00 41.42 4.34
1725 1813 3.097728 GTGTGACCGCTCGACGTG 61.098 66.667 0.00 0.00 41.42 4.49
1739 1846 0.314302 GACGTGGGATCATACCGGAG 59.686 60.000 9.46 0.00 0.00 4.63
1741 1848 1.744320 CGTGGGATCATACCGGAGCA 61.744 60.000 9.46 0.00 0.00 4.26
1742 1849 0.034059 GTGGGATCATACCGGAGCAG 59.966 60.000 9.46 0.00 0.00 4.24
1747 1854 1.274728 GATCATACCGGAGCAGCAGAT 59.725 52.381 9.46 0.94 0.00 2.90
1760 1867 1.797046 CAGCAGATGACGATGGCATAC 59.203 52.381 0.00 0.00 0.00 2.39
1762 1869 1.528586 GCAGATGACGATGGCATACAC 59.471 52.381 0.00 0.00 0.00 2.90
1763 1870 2.804572 GCAGATGACGATGGCATACACT 60.805 50.000 0.00 0.13 0.00 3.55
1764 1871 3.055591 CAGATGACGATGGCATACACTC 58.944 50.000 0.00 2.52 0.00 3.51
1785 1892 4.188462 TCCATATGCGTACTCCTTTTGTG 58.812 43.478 0.00 0.00 0.00 3.33
1786 1893 3.312421 CCATATGCGTACTCCTTTTGTGG 59.688 47.826 0.00 0.00 0.00 4.17
1789 1896 2.758009 TGCGTACTCCTTTTGTGGTAC 58.242 47.619 0.00 0.00 33.42 3.34
1790 1897 2.366266 TGCGTACTCCTTTTGTGGTACT 59.634 45.455 0.00 0.00 34.26 2.73
1791 1898 3.573538 TGCGTACTCCTTTTGTGGTACTA 59.426 43.478 0.00 0.00 34.26 1.82
1792 1899 4.171754 GCGTACTCCTTTTGTGGTACTAG 58.828 47.826 0.00 0.00 34.26 2.57
1793 1900 4.321527 GCGTACTCCTTTTGTGGTACTAGT 60.322 45.833 0.00 0.00 34.26 2.57
1794 1901 5.106157 GCGTACTCCTTTTGTGGTACTAGTA 60.106 44.000 0.00 0.00 34.26 1.82
1795 1902 6.549952 CGTACTCCTTTTGTGGTACTAGTAG 58.450 44.000 1.87 0.00 34.26 2.57
1796 1903 6.372659 CGTACTCCTTTTGTGGTACTAGTAGA 59.627 42.308 1.87 0.00 34.26 2.59
1797 1904 6.587206 ACTCCTTTTGTGGTACTAGTAGAC 57.413 41.667 1.87 4.05 0.00 2.59
1798 1905 6.313324 ACTCCTTTTGTGGTACTAGTAGACT 58.687 40.000 1.87 0.00 0.00 3.24
1823 1930 9.891828 CTAGTAGCATATCTCAGTTCAGTTAAG 57.108 37.037 0.00 0.00 0.00 1.85
1825 1932 8.754080 AGTAGCATATCTCAGTTCAGTTAAGTT 58.246 33.333 0.00 0.00 0.00 2.66
1856 1963 1.006220 CAATCGGCCGGATGATCGA 60.006 57.895 27.83 2.60 34.93 3.59
1858 1965 2.771763 AATCGGCCGGATGATCGAGC 62.772 60.000 27.83 0.00 34.93 5.03
1874 1981 1.386533 GAGCGGTGGTAGTAGTAGCA 58.613 55.000 5.35 5.35 34.20 3.49
1876 1983 0.248949 GCGGTGGTAGTAGTAGCAGC 60.249 60.000 22.98 22.98 46.84 5.25
1884 1991 2.979401 AGTAGTAGCAGCGATCGATG 57.021 50.000 28.00 28.00 34.24 3.84
1907 2014 5.046304 TGCTAAATCCAGGGAGCAGATATAC 60.046 44.000 0.00 0.00 39.93 1.47
1927 2034 8.950208 ATATACTACTGCTTCCTTTGTTCTTC 57.050 34.615 0.00 0.00 0.00 2.87
1952 2059 6.551736 GTTCATGTATATTTTGCGGTTGAGT 58.448 36.000 0.00 0.00 0.00 3.41
1968 2079 5.163447 CGGTTGAGTGATTGAGTTCCCTATA 60.163 44.000 0.00 0.00 0.00 1.31
1969 2080 6.463049 CGGTTGAGTGATTGAGTTCCCTATAT 60.463 42.308 0.00 0.00 0.00 0.86
1970 2081 7.255836 CGGTTGAGTGATTGAGTTCCCTATATA 60.256 40.741 0.00 0.00 0.00 0.86
1971 2082 8.598041 GGTTGAGTGATTGAGTTCCCTATATAT 58.402 37.037 0.00 0.00 0.00 0.86
1972 2083 9.429359 GTTGAGTGATTGAGTTCCCTATATATG 57.571 37.037 0.00 0.00 0.00 1.78
1973 2084 7.615403 TGAGTGATTGAGTTCCCTATATATGC 58.385 38.462 0.00 0.00 0.00 3.14
1974 2085 7.235399 TGAGTGATTGAGTTCCCTATATATGCA 59.765 37.037 0.00 0.00 0.00 3.96
1975 2086 8.155620 AGTGATTGAGTTCCCTATATATGCAT 57.844 34.615 3.79 3.79 0.00 3.96
1999 2115 9.401058 CATATGAAAATCCTTGGAGTTTCTACT 57.599 33.333 29.92 21.01 39.16 2.57
2000 2116 7.693969 ATGAAAATCCTTGGAGTTTCTACTG 57.306 36.000 29.92 0.00 39.16 2.74
2001 2117 6.837312 TGAAAATCCTTGGAGTTTCTACTGA 58.163 36.000 29.92 15.54 39.16 3.41
2002 2118 7.287061 TGAAAATCCTTGGAGTTTCTACTGAA 58.713 34.615 29.92 15.01 39.16 3.02
2003 2119 7.445402 TGAAAATCCTTGGAGTTTCTACTGAAG 59.555 37.037 29.92 0.00 39.16 3.02
2044 2160 6.074034 CGTTTTCTTGTGTCCAAAGTTTTGTT 60.074 34.615 4.12 0.00 36.45 2.83
2045 2161 6.777526 TTTCTTGTGTCCAAAGTTTTGTTG 57.222 33.333 4.12 0.00 36.45 3.33
2046 2162 5.461032 TCTTGTGTCCAAAGTTTTGTTGT 57.539 34.783 4.12 0.00 36.45 3.32
2047 2163 5.465935 TCTTGTGTCCAAAGTTTTGTTGTC 58.534 37.500 4.12 0.00 36.45 3.18
2048 2164 4.181309 TGTGTCCAAAGTTTTGTTGTCC 57.819 40.909 4.12 0.00 36.45 4.02
2084 2200 1.836802 GGAGGTCCAGCAGAGAAAGAT 59.163 52.381 0.00 0.00 35.64 2.40
2086 2202 3.181470 GGAGGTCCAGCAGAGAAAGATAC 60.181 52.174 0.00 0.00 35.64 2.24
2087 2203 3.704061 GAGGTCCAGCAGAGAAAGATACT 59.296 47.826 0.00 0.00 0.00 2.12
2088 2204 3.704061 AGGTCCAGCAGAGAAAGATACTC 59.296 47.826 0.00 0.00 34.95 2.59
2090 2206 3.034635 TCCAGCAGAGAAAGATACTCCC 58.965 50.000 0.00 0.00 35.27 4.30
2091 2207 2.103941 CCAGCAGAGAAAGATACTCCCC 59.896 54.545 0.00 0.00 35.27 4.81
2092 2208 2.103941 CAGCAGAGAAAGATACTCCCCC 59.896 54.545 0.00 0.00 35.27 5.40
2093 2209 2.022527 AGCAGAGAAAGATACTCCCCCT 60.023 50.000 0.00 0.00 35.27 4.79
2094 2210 2.774809 GCAGAGAAAGATACTCCCCCTT 59.225 50.000 0.00 0.00 35.27 3.95
2095 2211 3.181459 GCAGAGAAAGATACTCCCCCTTC 60.181 52.174 0.00 0.00 35.27 3.46
2096 2212 4.294347 CAGAGAAAGATACTCCCCCTTCT 58.706 47.826 0.00 0.00 35.27 2.85
2097 2213 4.343814 CAGAGAAAGATACTCCCCCTTCTC 59.656 50.000 0.00 0.00 35.27 2.87
2098 2214 3.644265 GAGAAAGATACTCCCCCTTCTCC 59.356 52.174 0.00 0.00 0.00 3.71
2099 2215 2.498473 AAGATACTCCCCCTTCTCCC 57.502 55.000 0.00 0.00 0.00 4.30
2100 2216 0.568697 AGATACTCCCCCTTCTCCCC 59.431 60.000 0.00 0.00 0.00 4.81
2101 2217 0.568697 GATACTCCCCCTTCTCCCCT 59.431 60.000 0.00 0.00 0.00 4.79
2102 2218 0.269173 ATACTCCCCCTTCTCCCCTG 59.731 60.000 0.00 0.00 0.00 4.45
2103 2219 0.858598 TACTCCCCCTTCTCCCCTGA 60.859 60.000 0.00 0.00 0.00 3.86
2109 2225 1.997874 CCTTCTCCCCTGACCCTGG 60.998 68.421 0.00 0.00 0.00 4.45
2117 2233 1.200519 CCCTGACCCTGGAACGATTA 58.799 55.000 0.00 0.00 0.00 1.75
2119 2235 1.139058 CCTGACCCTGGAACGATTAGG 59.861 57.143 0.00 0.00 0.00 2.69
2125 2241 1.838077 CCTGGAACGATTAGGACCCTT 59.162 52.381 0.00 0.00 33.33 3.95
2129 2245 1.140452 GAACGATTAGGACCCTTCCCC 59.860 57.143 0.00 0.00 44.10 4.81
2143 2259 0.253207 TTCCCCCTTCTTCCCCTCTC 60.253 60.000 0.00 0.00 0.00 3.20
2170 2286 2.126071 ATCGAACAGTCACGGGCG 60.126 61.111 0.00 0.00 0.00 6.13
2174 2290 1.885850 GAACAGTCACGGGCGTGTT 60.886 57.895 0.00 4.34 45.55 3.32
2175 2291 2.101209 GAACAGTCACGGGCGTGTTG 62.101 60.000 8.96 2.71 45.55 3.33
2176 2292 2.587753 CAGTCACGGGCGTGTTGT 60.588 61.111 0.00 0.00 45.55 3.32
2177 2293 2.587753 AGTCACGGGCGTGTTGTG 60.588 61.111 0.00 0.00 45.55 3.33
2178 2294 2.586635 GTCACGGGCGTGTTGTGA 60.587 61.111 0.00 0.00 45.55 3.58
2179 2295 2.174969 GTCACGGGCGTGTTGTGAA 61.175 57.895 0.00 0.00 43.58 3.18
2180 2296 1.227704 TCACGGGCGTGTTGTGAAT 60.228 52.632 0.00 0.00 45.55 2.57
2181 2297 0.816018 TCACGGGCGTGTTGTGAATT 60.816 50.000 0.00 0.00 45.55 2.17
2182 2298 0.030101 CACGGGCGTGTTGTGAATTT 59.970 50.000 0.00 0.00 40.91 1.82
2183 2299 0.030101 ACGGGCGTGTTGTGAATTTG 59.970 50.000 0.00 0.00 0.00 2.32
2184 2300 0.309302 CGGGCGTGTTGTGAATTTGA 59.691 50.000 0.00 0.00 0.00 2.69
2185 2301 1.662876 CGGGCGTGTTGTGAATTTGAG 60.663 52.381 0.00 0.00 0.00 3.02
2186 2302 1.606668 GGGCGTGTTGTGAATTTGAGA 59.393 47.619 0.00 0.00 0.00 3.27
2187 2303 2.228822 GGGCGTGTTGTGAATTTGAGAT 59.771 45.455 0.00 0.00 0.00 2.75
2188 2304 3.236816 GGCGTGTTGTGAATTTGAGATG 58.763 45.455 0.00 0.00 0.00 2.90
2189 2305 3.236816 GCGTGTTGTGAATTTGAGATGG 58.763 45.455 0.00 0.00 0.00 3.51
2190 2306 3.304659 GCGTGTTGTGAATTTGAGATGGT 60.305 43.478 0.00 0.00 0.00 3.55
2191 2307 4.083537 GCGTGTTGTGAATTTGAGATGGTA 60.084 41.667 0.00 0.00 0.00 3.25
2192 2308 5.382303 CGTGTTGTGAATTTGAGATGGTAC 58.618 41.667 0.00 0.00 0.00 3.34
2210 2326 1.125711 ACACGGTAAGCCCAACTCCT 61.126 55.000 0.00 0.00 0.00 3.69
2211 2327 0.673644 CACGGTAAGCCCAACTCCTG 60.674 60.000 0.00 0.00 0.00 3.86
2217 2333 3.435186 GCCCAACTCCTGCGCTTC 61.435 66.667 9.73 0.00 0.00 3.86
2223 2339 0.685097 AACTCCTGCGCTTCACCTAA 59.315 50.000 9.73 0.00 0.00 2.69
2229 2345 2.487762 CCTGCGCTTCACCTAAATTTCA 59.512 45.455 9.73 0.00 0.00 2.69
2293 2409 4.694760 ACTTAGTCCAAAAGTACCGGTT 57.305 40.909 15.04 0.00 35.44 4.44
2314 2434 9.008965 CCGGTTGAATTATCCATCATACATTTA 57.991 33.333 0.00 0.00 0.00 1.40
2374 2494 1.034356 ACAAACCCTTAACCGGTTGC 58.966 50.000 30.08 0.00 42.90 4.17
2397 2517 2.032071 CCGTCCTTGGCCGTCTTT 59.968 61.111 0.00 0.00 0.00 2.52
2399 2519 1.017701 CCGTCCTTGGCCGTCTTTAC 61.018 60.000 0.00 0.00 0.00 2.01
2412 2532 0.388134 TCTTTACTGCCTGTCGTCGC 60.388 55.000 0.00 0.00 0.00 5.19
2414 2534 3.620300 TTACTGCCTGTCGTCGCCG 62.620 63.158 0.00 0.00 0.00 6.46
2525 2645 1.829533 GACCACGTATCGGCCCCTA 60.830 63.158 0.00 0.00 0.00 3.53
2528 2648 2.522680 ACGTATCGGCCCCTACCC 60.523 66.667 0.00 0.00 0.00 3.69
2530 2650 2.864471 CGTATCGGCCCCTACCCAC 61.864 68.421 0.00 0.00 0.00 4.61
2615 2735 1.349688 TCTACCAACGCCAAGTTCCAT 59.650 47.619 0.00 0.00 42.02 3.41
2616 2736 2.159382 CTACCAACGCCAAGTTCCATT 58.841 47.619 0.00 0.00 42.02 3.16
2617 2737 0.673437 ACCAACGCCAAGTTCCATTG 59.327 50.000 0.00 0.00 42.02 2.82
2618 2738 0.667184 CCAACGCCAAGTTCCATTGC 60.667 55.000 0.00 0.00 42.02 3.56
2619 2739 0.031857 CAACGCCAAGTTCCATTGCA 59.968 50.000 0.00 0.00 42.02 4.08
2620 2740 0.968405 AACGCCAAGTTCCATTGCAT 59.032 45.000 0.00 0.00 39.16 3.96
2621 2741 0.527565 ACGCCAAGTTCCATTGCATC 59.472 50.000 0.00 0.00 0.00 3.91
2622 2742 0.813184 CGCCAAGTTCCATTGCATCT 59.187 50.000 0.00 0.00 0.00 2.90
2623 2743 1.202222 CGCCAAGTTCCATTGCATCTC 60.202 52.381 0.00 0.00 0.00 2.75
2624 2744 2.097825 GCCAAGTTCCATTGCATCTCT 58.902 47.619 0.00 0.00 0.00 3.10
2625 2745 2.159282 GCCAAGTTCCATTGCATCTCTG 60.159 50.000 0.00 0.00 0.00 3.35
2626 2746 3.087031 CCAAGTTCCATTGCATCTCTGT 58.913 45.455 0.00 0.00 0.00 3.41
2627 2747 3.128242 CCAAGTTCCATTGCATCTCTGTC 59.872 47.826 0.00 0.00 0.00 3.51
2628 2748 2.996631 AGTTCCATTGCATCTCTGTCC 58.003 47.619 0.00 0.00 0.00 4.02
2629 2749 2.019984 GTTCCATTGCATCTCTGTCCC 58.980 52.381 0.00 0.00 0.00 4.46
2630 2750 1.288188 TCCATTGCATCTCTGTCCCA 58.712 50.000 0.00 0.00 0.00 4.37
2631 2751 1.065199 TCCATTGCATCTCTGTCCCAC 60.065 52.381 0.00 0.00 0.00 4.61
2632 2752 1.064906 CCATTGCATCTCTGTCCCACT 60.065 52.381 0.00 0.00 0.00 4.00
2633 2753 2.014857 CATTGCATCTCTGTCCCACTG 58.985 52.381 0.00 0.00 0.00 3.66
2634 2754 0.325933 TTGCATCTCTGTCCCACTGG 59.674 55.000 0.00 0.00 0.00 4.00
2635 2755 1.222936 GCATCTCTGTCCCACTGGG 59.777 63.158 7.97 7.97 46.11 4.45
2636 2756 1.222936 CATCTCTGTCCCACTGGGC 59.777 63.158 9.60 5.46 43.94 5.36
2637 2757 1.229625 ATCTCTGTCCCACTGGGCA 60.230 57.895 9.60 9.80 46.38 5.36
2638 2758 1.557269 ATCTCTGTCCCACTGGGCAC 61.557 60.000 9.60 9.16 42.76 5.01
2639 2759 2.447572 TCTGTCCCACTGGGCACA 60.448 61.111 9.60 12.98 42.76 4.57
2640 2760 1.845627 CTCTGTCCCACTGGGCACAT 61.846 60.000 9.60 0.00 42.76 3.21
2641 2761 1.377725 CTGTCCCACTGGGCACATC 60.378 63.158 9.60 0.00 42.76 3.06
2642 2762 2.128290 CTGTCCCACTGGGCACATCA 62.128 60.000 9.60 3.03 42.76 3.07
2643 2763 1.074775 GTCCCACTGGGCACATCAA 59.925 57.895 9.60 0.00 43.94 2.57
2644 2764 0.962356 GTCCCACTGGGCACATCAAG 60.962 60.000 9.60 0.00 43.94 3.02
2645 2765 1.679977 CCCACTGGGCACATCAAGG 60.680 63.158 0.00 0.00 35.35 3.61
2646 2766 2.345760 CCACTGGGCACATCAAGGC 61.346 63.158 0.00 0.00 0.00 4.35
2651 2771 2.877691 GGCACATCAAGGCCGTTC 59.122 61.111 0.00 0.00 40.93 3.95
2652 2772 2.700773 GGCACATCAAGGCCGTTCC 61.701 63.158 0.00 0.00 40.93 3.62
2653 2773 1.971167 GCACATCAAGGCCGTTCCA 60.971 57.895 0.00 0.00 37.29 3.53
2654 2774 1.315257 GCACATCAAGGCCGTTCCAT 61.315 55.000 0.00 0.00 37.29 3.41
2655 2775 1.176527 CACATCAAGGCCGTTCCATT 58.823 50.000 0.00 0.00 37.29 3.16
2656 2776 1.135315 CACATCAAGGCCGTTCCATTG 60.135 52.381 0.00 0.00 37.29 2.82
2657 2777 0.179129 CATCAAGGCCGTTCCATTGC 60.179 55.000 0.00 0.00 37.29 3.56
2658 2778 0.611618 ATCAAGGCCGTTCCATTGCA 60.612 50.000 0.00 0.00 37.29 4.08
2659 2779 1.080569 CAAGGCCGTTCCATTGCAC 60.081 57.895 0.00 0.00 37.29 4.57
2660 2780 1.530419 AAGGCCGTTCCATTGCACA 60.530 52.632 0.00 0.00 37.29 4.57
2661 2781 0.899717 AAGGCCGTTCCATTGCACAT 60.900 50.000 0.00 0.00 37.29 3.21
2662 2782 1.139520 GGCCGTTCCATTGCACATC 59.860 57.895 0.00 0.00 34.01 3.06
2663 2783 1.594194 GGCCGTTCCATTGCACATCA 61.594 55.000 0.00 0.00 34.01 3.07
2664 2784 0.243365 GCCGTTCCATTGCACATCAA 59.757 50.000 0.00 0.00 39.32 2.57
2665 2785 1.733389 GCCGTTCCATTGCACATCAAG 60.733 52.381 0.00 0.00 38.22 3.02
2666 2786 1.135315 CCGTTCCATTGCACATCAAGG 60.135 52.381 0.00 0.00 38.22 3.61
2667 2787 1.733389 CGTTCCATTGCACATCAAGGC 60.733 52.381 0.00 0.00 38.22 4.35
2668 2788 0.896923 TTCCATTGCACATCAAGGCC 59.103 50.000 0.00 0.00 38.22 5.19
2669 2789 1.140161 CCATTGCACATCAAGGCCG 59.860 57.895 0.00 0.00 38.22 6.13
2670 2790 1.597797 CCATTGCACATCAAGGCCGT 61.598 55.000 0.00 0.00 38.22 5.68
2671 2791 0.179156 CATTGCACATCAAGGCCGTC 60.179 55.000 0.00 0.00 38.22 4.79
2672 2792 1.315257 ATTGCACATCAAGGCCGTCC 61.315 55.000 0.00 0.00 38.22 4.79
2673 2793 3.134127 GCACATCAAGGCCGTCCC 61.134 66.667 0.00 0.00 0.00 4.46
2674 2794 2.350895 CACATCAAGGCCGTCCCA 59.649 61.111 0.00 0.00 35.39 4.37
2675 2795 2.040544 CACATCAAGGCCGTCCCAC 61.041 63.158 0.00 0.00 35.39 4.61
2676 2796 2.224159 ACATCAAGGCCGTCCCACT 61.224 57.895 0.00 0.00 35.39 4.00
2677 2797 1.746615 CATCAAGGCCGTCCCACTG 60.747 63.158 0.00 0.00 35.39 3.66
2678 2798 2.971598 ATCAAGGCCGTCCCACTGG 61.972 63.158 0.00 0.00 35.39 4.00
2679 2799 4.722700 CAAGGCCGTCCCACTGGG 62.723 72.222 7.97 7.97 46.11 4.45
2692 2812 4.803426 CTGGGCACGCTCGGACTC 62.803 72.222 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.562182 CAAACTTTGGACAAGGTAGGGT 58.438 45.455 0.07 0.00 30.04 4.34
20 21 4.529897 CCATCTTCATTCATGGAGAACCA 58.470 43.478 1.74 0.00 45.08 3.67
21 22 3.317430 GCCATCTTCATTCATGGAGAACC 59.683 47.826 1.74 0.00 45.08 3.62
22 23 3.949754 TGCCATCTTCATTCATGGAGAAC 59.050 43.478 1.74 0.00 45.08 3.01
23 24 4.239428 TGCCATCTTCATTCATGGAGAA 57.761 40.909 1.74 0.00 45.08 2.87
24 25 3.937778 TGCCATCTTCATTCATGGAGA 57.062 42.857 0.00 0.00 45.94 3.71
25 26 4.341235 ACATTGCCATCTTCATTCATGGAG 59.659 41.667 1.99 0.00 42.11 3.86
26 27 4.283337 ACATTGCCATCTTCATTCATGGA 58.717 39.130 1.99 0.00 42.11 3.41
27 28 4.665833 ACATTGCCATCTTCATTCATGG 57.334 40.909 0.00 0.00 42.39 3.66
28 29 8.657074 AAAATACATTGCCATCTTCATTCATG 57.343 30.769 0.00 0.00 0.00 3.07
29 30 9.104965 CAAAAATACATTGCCATCTTCATTCAT 57.895 29.630 0.00 0.00 0.00 2.57
30 31 7.549842 CCAAAAATACATTGCCATCTTCATTCA 59.450 33.333 0.00 0.00 0.00 2.57
31 32 7.466320 GCCAAAAATACATTGCCATCTTCATTC 60.466 37.037 0.00 0.00 0.00 2.67
32 33 6.316890 GCCAAAAATACATTGCCATCTTCATT 59.683 34.615 0.00 0.00 0.00 2.57
33 34 5.818857 GCCAAAAATACATTGCCATCTTCAT 59.181 36.000 0.00 0.00 0.00 2.57
34 35 5.177326 GCCAAAAATACATTGCCATCTTCA 58.823 37.500 0.00 0.00 0.00 3.02
35 36 4.571984 GGCCAAAAATACATTGCCATCTTC 59.428 41.667 0.00 0.00 0.00 2.87
36 37 4.225717 AGGCCAAAAATACATTGCCATCTT 59.774 37.500 5.01 0.00 0.00 2.40
37 38 3.776417 AGGCCAAAAATACATTGCCATCT 59.224 39.130 5.01 0.00 0.00 2.90
38 39 4.122046 GAGGCCAAAAATACATTGCCATC 58.878 43.478 5.01 0.00 0.00 3.51
39 40 3.518705 TGAGGCCAAAAATACATTGCCAT 59.481 39.130 5.01 0.00 0.00 4.40
40 41 2.902486 TGAGGCCAAAAATACATTGCCA 59.098 40.909 5.01 0.00 0.00 4.92
41 42 3.261580 GTGAGGCCAAAAATACATTGCC 58.738 45.455 5.01 0.00 0.00 4.52
42 43 3.261580 GGTGAGGCCAAAAATACATTGC 58.738 45.455 5.01 0.00 37.17 3.56
43 44 4.533919 TGGTGAGGCCAAAAATACATTG 57.466 40.909 5.01 0.00 45.94 2.82
54 55 1.300963 GCAGAATCTGGTGAGGCCA 59.699 57.895 12.66 0.00 46.95 5.36
55 56 1.028868 GTGCAGAATCTGGTGAGGCC 61.029 60.000 12.66 0.00 37.90 5.19
56 57 0.035630 AGTGCAGAATCTGGTGAGGC 60.036 55.000 12.66 0.00 31.21 4.70
57 58 1.735386 CAGTGCAGAATCTGGTGAGG 58.265 55.000 12.66 0.00 31.21 3.86
58 59 1.085091 GCAGTGCAGAATCTGGTGAG 58.915 55.000 11.09 0.00 32.94 3.51
59 60 0.397564 TGCAGTGCAGAATCTGGTGA 59.602 50.000 15.37 0.00 33.32 4.02
60 61 0.520404 GTGCAGTGCAGAATCTGGTG 59.480 55.000 20.42 0.00 40.08 4.17
61 62 0.109153 TGTGCAGTGCAGAATCTGGT 59.891 50.000 20.42 0.00 40.08 4.00
62 63 1.132453 CATGTGCAGTGCAGAATCTGG 59.868 52.381 20.42 2.57 40.08 3.86
63 64 1.467543 GCATGTGCAGTGCAGAATCTG 60.468 52.381 20.42 13.86 40.08 2.90
64 65 0.809385 GCATGTGCAGTGCAGAATCT 59.191 50.000 20.42 0.00 40.08 2.40
65 66 0.524414 TGCATGTGCAGTGCAGAATC 59.476 50.000 20.42 13.57 46.76 2.52
66 67 2.648593 TGCATGTGCAGTGCAGAAT 58.351 47.368 20.42 12.77 46.76 2.40
67 68 4.160928 TGCATGTGCAGTGCAGAA 57.839 50.000 20.42 10.73 46.76 3.02
76 77 1.267533 TGAGACATTGTGTGCATGTGC 59.732 47.619 0.00 0.00 42.50 4.57
77 78 3.842732 ATGAGACATTGTGTGCATGTG 57.157 42.857 0.00 0.00 0.00 3.21
78 79 4.859304 AAATGAGACATTGTGTGCATGT 57.141 36.364 0.00 0.00 0.00 3.21
79 80 4.143200 GCAAAATGAGACATTGTGTGCATG 60.143 41.667 13.73 0.00 0.00 4.06
80 81 3.991773 GCAAAATGAGACATTGTGTGCAT 59.008 39.130 13.73 0.00 0.00 3.96
81 82 3.068448 AGCAAAATGAGACATTGTGTGCA 59.932 39.130 19.75 0.00 31.95 4.57
82 83 3.645884 AGCAAAATGAGACATTGTGTGC 58.354 40.909 13.73 14.12 0.00 4.57
83 84 4.084745 GCAAGCAAAATGAGACATTGTGTG 60.085 41.667 13.73 8.05 0.00 3.82
84 85 4.053295 GCAAGCAAAATGAGACATTGTGT 58.947 39.130 13.73 0.00 0.00 3.72
85 86 4.304110 AGCAAGCAAAATGAGACATTGTG 58.696 39.130 9.48 9.48 0.00 3.33
86 87 4.595762 AGCAAGCAAAATGAGACATTGT 57.404 36.364 0.00 0.00 0.00 2.71
87 88 4.748102 ACAAGCAAGCAAAATGAGACATTG 59.252 37.500 0.00 0.00 0.00 2.82
88 89 4.748102 CACAAGCAAGCAAAATGAGACATT 59.252 37.500 0.00 0.00 0.00 2.71
89 90 4.202182 ACACAAGCAAGCAAAATGAGACAT 60.202 37.500 0.00 0.00 0.00 3.06
90 91 3.130869 ACACAAGCAAGCAAAATGAGACA 59.869 39.130 0.00 0.00 0.00 3.41
91 92 3.709987 ACACAAGCAAGCAAAATGAGAC 58.290 40.909 0.00 0.00 0.00 3.36
92 93 4.362279 GAACACAAGCAAGCAAAATGAGA 58.638 39.130 0.00 0.00 0.00 3.27
93 94 3.492011 GGAACACAAGCAAGCAAAATGAG 59.508 43.478 0.00 0.00 0.00 2.90
94 95 3.132646 AGGAACACAAGCAAGCAAAATGA 59.867 39.130 0.00 0.00 0.00 2.57
95 96 3.460103 AGGAACACAAGCAAGCAAAATG 58.540 40.909 0.00 0.00 0.00 2.32
96 97 3.825143 AGGAACACAAGCAAGCAAAAT 57.175 38.095 0.00 0.00 0.00 1.82
97 98 3.260740 CAAGGAACACAAGCAAGCAAAA 58.739 40.909 0.00 0.00 0.00 2.44
98 99 2.891112 CAAGGAACACAAGCAAGCAAA 58.109 42.857 0.00 0.00 0.00 3.68
99 100 1.471327 GCAAGGAACACAAGCAAGCAA 60.471 47.619 0.00 0.00 0.00 3.91
100 101 0.102844 GCAAGGAACACAAGCAAGCA 59.897 50.000 0.00 0.00 0.00 3.91
101 102 0.598419 GGCAAGGAACACAAGCAAGC 60.598 55.000 0.00 0.00 0.00 4.01
102 103 1.000938 GAGGCAAGGAACACAAGCAAG 60.001 52.381 0.00 0.00 0.00 4.01
103 104 1.032014 GAGGCAAGGAACACAAGCAA 58.968 50.000 0.00 0.00 0.00 3.91
104 105 0.183492 AGAGGCAAGGAACACAAGCA 59.817 50.000 0.00 0.00 0.00 3.91
105 106 0.595095 CAGAGGCAAGGAACACAAGC 59.405 55.000 0.00 0.00 0.00 4.01
106 107 2.149578 CTCAGAGGCAAGGAACACAAG 58.850 52.381 0.00 0.00 0.00 3.16
107 108 1.768275 TCTCAGAGGCAAGGAACACAA 59.232 47.619 0.00 0.00 0.00 3.33
108 109 1.423584 TCTCAGAGGCAAGGAACACA 58.576 50.000 0.00 0.00 0.00 3.72
109 110 2.550830 TTCTCAGAGGCAAGGAACAC 57.449 50.000 0.00 0.00 0.00 3.32
110 111 2.224621 CCTTTCTCAGAGGCAAGGAACA 60.225 50.000 18.46 0.00 38.52 3.18
111 112 2.039084 TCCTTTCTCAGAGGCAAGGAAC 59.961 50.000 21.55 0.00 41.54 3.62
112 113 2.304180 CTCCTTTCTCAGAGGCAAGGAA 59.696 50.000 22.94 12.96 43.39 3.36
113 114 1.905215 CTCCTTTCTCAGAGGCAAGGA 59.095 52.381 22.03 22.03 42.11 3.36
114 115 1.905215 TCTCCTTTCTCAGAGGCAAGG 59.095 52.381 17.65 17.65 37.70 3.61
115 116 3.910568 ATCTCCTTTCTCAGAGGCAAG 57.089 47.619 0.00 0.75 34.17 4.01
116 117 5.664908 AGATAATCTCCTTTCTCAGAGGCAA 59.335 40.000 0.00 0.00 34.17 4.52
117 118 5.215069 AGATAATCTCCTTTCTCAGAGGCA 58.785 41.667 0.00 0.00 34.17 4.75
118 119 5.806654 AGATAATCTCCTTTCTCAGAGGC 57.193 43.478 0.00 0.00 34.17 4.70
119 120 9.108284 GAAAAAGATAATCTCCTTTCTCAGAGG 57.892 37.037 0.00 0.00 32.01 3.69
124 125 7.546778 AGCGAAAAAGATAATCTCCTTTCTC 57.453 36.000 0.00 0.00 31.38 2.87
155 156 2.274542 TGCCCCCTATCTTTCTGACAA 58.725 47.619 0.00 0.00 0.00 3.18
163 164 3.117131 CCTTAACCAATGCCCCCTATCTT 60.117 47.826 0.00 0.00 0.00 2.40
173 174 3.621715 CCTTAGACGACCTTAACCAATGC 59.378 47.826 0.00 0.00 0.00 3.56
211 212 0.617413 ACCTCCATCAGAGCAACAGG 59.383 55.000 0.00 0.00 41.74 4.00
222 223 1.133790 GCTCACAAATGCACCTCCATC 59.866 52.381 0.00 0.00 0.00 3.51
229 230 2.421073 TGATAGCAGCTCACAAATGCAC 59.579 45.455 0.00 0.00 42.45 4.57
236 237 3.706086 TGATAGGTTGATAGCAGCTCACA 59.294 43.478 0.00 0.00 0.00 3.58
237 238 4.327982 TGATAGGTTGATAGCAGCTCAC 57.672 45.455 0.00 0.00 0.00 3.51
238 239 5.557576 AATGATAGGTTGATAGCAGCTCA 57.442 39.130 0.00 0.00 0.00 4.26
250 255 9.787435 TTGTACAAACTGTAGAAATGATAGGTT 57.213 29.630 5.64 0.00 33.88 3.50
266 271 5.031066 TGGTAGAAGCAGTTGTACAAACT 57.969 39.130 10.51 7.33 34.72 2.66
267 272 5.344207 CTGGTAGAAGCAGTTGTACAAAC 57.656 43.478 10.51 5.04 38.80 2.93
278 283 3.788227 AATCAACCACTGGTAGAAGCA 57.212 42.857 0.00 0.00 33.12 3.91
279 284 4.072131 TGAAATCAACCACTGGTAGAAGC 58.928 43.478 0.00 0.00 33.12 3.86
280 285 5.308825 ACTGAAATCAACCACTGGTAGAAG 58.691 41.667 0.00 0.00 33.12 2.85
281 286 5.304686 ACTGAAATCAACCACTGGTAGAA 57.695 39.130 0.00 0.00 33.12 2.10
282 287 4.974645 ACTGAAATCAACCACTGGTAGA 57.025 40.909 0.00 0.00 33.12 2.59
283 288 5.586243 CCATACTGAAATCAACCACTGGTAG 59.414 44.000 0.00 0.00 33.12 3.18
284 289 5.496556 CCATACTGAAATCAACCACTGGTA 58.503 41.667 0.00 0.00 33.12 3.25
285 290 4.335416 CCATACTGAAATCAACCACTGGT 58.665 43.478 0.00 0.00 37.65 4.00
286 291 3.129287 GCCATACTGAAATCAACCACTGG 59.871 47.826 0.00 0.00 0.00 4.00
322 327 1.456923 GCACGTACGTTTTCAGGGTAC 59.543 52.381 20.23 0.00 34.60 3.34
326 331 1.723003 GTAGGCACGTACGTTTTCAGG 59.277 52.381 20.23 7.53 0.00 3.86
329 334 1.723003 CAGGTAGGCACGTACGTTTTC 59.277 52.381 20.23 11.01 0.00 2.29
334 339 0.248377 GTAGCAGGTAGGCACGTACG 60.248 60.000 15.01 15.01 35.83 3.67
339 344 1.153628 CACGGTAGCAGGTAGGCAC 60.154 63.158 0.00 0.00 35.83 5.01
342 347 0.384669 GTAGCACGGTAGCAGGTAGG 59.615 60.000 5.59 0.00 36.85 3.18
343 348 0.029035 CGTAGCACGGTAGCAGGTAG 59.971 60.000 5.59 0.00 38.08 3.18
344 349 2.100846 CGTAGCACGGTAGCAGGTA 58.899 57.895 5.59 0.00 38.08 3.08
345 350 2.882876 CGTAGCACGGTAGCAGGT 59.117 61.111 5.59 0.00 38.08 4.00
355 360 0.318445 ACCACTCGTTCACGTAGCAC 60.318 55.000 0.00 0.00 40.80 4.40
412 420 4.823442 TGAAGCATGCATGGTCTATTTAGG 59.177 41.667 30.01 0.00 37.57 2.69
413 421 5.559608 CGTGAAGCATGCATGGTCTATTTAG 60.560 44.000 30.01 14.51 37.57 1.85
447 455 0.668401 GCAGCAGCACACAATTTCCC 60.668 55.000 0.00 0.00 41.58 3.97
467 477 4.927782 AGGAACGCGGCAACAGCA 62.928 61.111 12.47 0.00 36.17 4.41
472 482 3.776347 TTGGGAAGGAACGCGGCAA 62.776 57.895 12.47 0.00 0.00 4.52
475 485 3.419759 CGTTGGGAAGGAACGCGG 61.420 66.667 12.47 0.00 39.71 6.46
476 486 1.897398 CTTCGTTGGGAAGGAACGCG 61.897 60.000 3.53 3.53 46.89 6.01
541 551 1.473258 CTCAGTGGAGTGGAGAGAGG 58.527 60.000 0.00 0.00 36.36 3.69
585 602 4.564116 GCTCATGCATGCACGGGC 62.564 66.667 24.21 24.21 39.41 6.13
589 606 1.799403 CTAGCTAGCTCATGCATGCAC 59.201 52.381 25.37 15.39 42.74 4.57
590 607 1.876837 GCTAGCTAGCTCATGCATGCA 60.877 52.381 33.71 25.04 45.62 3.96
591 608 0.797542 GCTAGCTAGCTCATGCATGC 59.202 55.000 33.71 11.82 45.62 4.06
650 667 4.154918 GTGATTTTGATCTGTGAGGTGACC 59.845 45.833 0.00 0.00 0.00 4.02
662 682 1.323534 CGGTCCGACGTGATTTTGATC 59.676 52.381 4.91 0.00 0.00 2.92
711 735 1.253999 CTTTCCGTGTACGTACGCTC 58.746 55.000 30.36 17.81 42.44 5.03
842 896 0.184933 AGGAGATGAGCTAGCGGAGT 59.815 55.000 9.55 0.00 0.00 3.85
851 920 3.004315 GCTATATAGCCGAGGAGATGAGC 59.996 52.174 22.02 0.00 43.39 4.26
852 921 4.829064 GCTATATAGCCGAGGAGATGAG 57.171 50.000 22.02 0.00 43.39 2.90
865 934 3.217231 CCGGGCCGGGCTATATAG 58.783 66.667 37.27 7.97 44.15 1.31
894 963 1.003839 GTGGATGGAAGTGTGGCGA 60.004 57.895 0.00 0.00 0.00 5.54
951 1020 0.038166 ACACACAGGCACAATAGGGG 59.962 55.000 0.00 0.00 0.00 4.79
952 1021 1.167851 CACACACAGGCACAATAGGG 58.832 55.000 0.00 0.00 0.00 3.53
953 1022 1.536766 CACACACACAGGCACAATAGG 59.463 52.381 0.00 0.00 0.00 2.57
955 1024 1.946081 CACACACACACAGGCACAATA 59.054 47.619 0.00 0.00 0.00 1.90
956 1025 0.740149 CACACACACACAGGCACAAT 59.260 50.000 0.00 0.00 0.00 2.71
959 1028 0.461870 TCTCACACACACACAGGCAC 60.462 55.000 0.00 0.00 0.00 5.01
960 1029 0.179076 CTCTCACACACACACAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
961 1030 0.104855 TCTCTCACACACACACAGGC 59.895 55.000 0.00 0.00 0.00 4.85
962 1031 1.683385 TCTCTCTCACACACACACAGG 59.317 52.381 0.00 0.00 0.00 4.00
963 1032 2.620585 TCTCTCTCTCACACACACACAG 59.379 50.000 0.00 0.00 0.00 3.66
964 1033 2.359214 GTCTCTCTCTCACACACACACA 59.641 50.000 0.00 0.00 0.00 3.72
965 1034 2.359214 TGTCTCTCTCTCACACACACAC 59.641 50.000 0.00 0.00 0.00 3.82
966 1035 2.620585 CTGTCTCTCTCTCACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
967 1036 2.881513 TCTGTCTCTCTCTCACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
1047 1135 0.610687 CCTTGAGCGAGAACTCCCTT 59.389 55.000 0.00 0.00 35.72 3.95
1062 1150 2.872557 CAGTGCATCGCCACCTTG 59.127 61.111 0.00 0.00 36.38 3.61
1257 1345 4.144703 GGCGGGAAGACGAGGTCC 62.145 72.222 0.00 0.00 35.47 4.46
1289 1377 4.845307 CCTCCCCCTCCCCCTTCC 62.845 77.778 0.00 0.00 0.00 3.46
1705 1793 2.335369 GTCGAGCGGTCACACACT 59.665 61.111 15.89 0.00 0.00 3.55
1707 1795 3.588906 ACGTCGAGCGGTCACACA 61.589 61.111 15.89 0.00 46.52 3.72
1709 1797 4.337060 CCACGTCGAGCGGTCACA 62.337 66.667 15.89 0.00 46.52 3.58
1712 1800 3.753070 GATCCCACGTCGAGCGGTC 62.753 68.421 4.06 4.06 46.52 4.79
1713 1801 3.823330 GATCCCACGTCGAGCGGT 61.823 66.667 0.00 0.00 46.52 5.68
1716 1804 0.318784 GGTATGATCCCACGTCGAGC 60.319 60.000 0.00 0.00 0.00 5.03
1717 1805 0.040336 CGGTATGATCCCACGTCGAG 60.040 60.000 0.00 0.00 0.00 4.04
1718 1806 1.449726 CCGGTATGATCCCACGTCGA 61.450 60.000 0.00 0.00 0.00 4.20
1719 1807 1.007734 CCGGTATGATCCCACGTCG 60.008 63.158 0.00 0.00 0.00 5.12
1721 1809 1.745320 GCTCCGGTATGATCCCACGT 61.745 60.000 0.00 0.00 0.00 4.49
1724 1812 1.758440 GCTGCTCCGGTATGATCCCA 61.758 60.000 0.00 0.00 0.00 4.37
1725 1813 1.004440 GCTGCTCCGGTATGATCCC 60.004 63.158 0.00 0.00 0.00 3.85
1727 1815 0.676184 TCTGCTGCTCCGGTATGATC 59.324 55.000 0.00 0.00 0.00 2.92
1739 1846 1.164662 ATGCCATCGTCATCTGCTGC 61.165 55.000 0.00 0.00 0.00 5.25
1741 1848 1.413812 TGTATGCCATCGTCATCTGCT 59.586 47.619 0.00 0.00 0.00 4.24
1742 1849 1.528586 GTGTATGCCATCGTCATCTGC 59.471 52.381 0.00 0.00 0.00 4.26
1747 1854 1.190643 TGGAGTGTATGCCATCGTCA 58.809 50.000 0.00 0.00 0.00 4.35
1760 1867 3.735237 AAGGAGTACGCATATGGAGTG 57.265 47.619 4.56 0.00 0.00 3.51
1762 1869 4.271049 CACAAAAGGAGTACGCATATGGAG 59.729 45.833 4.56 0.00 0.00 3.86
1763 1870 4.188462 CACAAAAGGAGTACGCATATGGA 58.812 43.478 4.56 0.00 0.00 3.41
1764 1871 3.312421 CCACAAAAGGAGTACGCATATGG 59.688 47.826 4.56 0.00 0.00 2.74
1790 1897 9.932207 GAACTGAGATATGCTACTAGTCTACTA 57.068 37.037 0.00 0.00 0.00 1.82
1791 1898 8.433599 TGAACTGAGATATGCTACTAGTCTACT 58.566 37.037 0.00 0.00 0.00 2.57
1792 1899 8.610248 TGAACTGAGATATGCTACTAGTCTAC 57.390 38.462 0.00 0.00 0.00 2.59
1793 1900 8.433599 ACTGAACTGAGATATGCTACTAGTCTA 58.566 37.037 0.00 0.00 0.00 2.59
1794 1901 7.287061 ACTGAACTGAGATATGCTACTAGTCT 58.713 38.462 0.00 0.00 0.00 3.24
1795 1902 7.504924 ACTGAACTGAGATATGCTACTAGTC 57.495 40.000 0.00 0.00 0.00 2.59
1796 1903 7.889873 AACTGAACTGAGATATGCTACTAGT 57.110 36.000 0.00 0.00 0.00 2.57
1797 1904 9.891828 CTTAACTGAACTGAGATATGCTACTAG 57.108 37.037 0.00 0.00 0.00 2.57
1798 1905 9.409918 ACTTAACTGAACTGAGATATGCTACTA 57.590 33.333 0.00 0.00 0.00 1.82
1823 1930 4.024302 GGCCGATTGCTACTACCAATTAAC 60.024 45.833 0.00 0.00 40.92 2.01
1825 1932 3.735591 GGCCGATTGCTACTACCAATTA 58.264 45.455 0.00 0.00 40.92 1.40
1826 1933 2.572290 GGCCGATTGCTACTACCAATT 58.428 47.619 0.00 0.00 40.92 2.32
1827 1934 1.540363 CGGCCGATTGCTACTACCAAT 60.540 52.381 24.07 0.00 40.92 3.16
1828 1935 0.179094 CGGCCGATTGCTACTACCAA 60.179 55.000 24.07 0.00 40.92 3.67
1829 1936 1.440060 CGGCCGATTGCTACTACCA 59.560 57.895 24.07 0.00 40.92 3.25
1830 1937 1.300697 CCGGCCGATTGCTACTACC 60.301 63.158 30.73 0.00 40.92 3.18
1831 1938 0.317479 ATCCGGCCGATTGCTACTAC 59.683 55.000 30.73 0.00 40.92 2.73
1832 1939 0.317160 CATCCGGCCGATTGCTACTA 59.683 55.000 30.73 0.00 40.92 1.82
1833 1940 1.069765 CATCCGGCCGATTGCTACT 59.930 57.895 30.73 0.00 40.92 2.57
1856 1963 1.390565 CTGCTACTACTACCACCGCT 58.609 55.000 0.00 0.00 0.00 5.52
1858 1965 0.029035 CGCTGCTACTACTACCACCG 59.971 60.000 0.00 0.00 0.00 4.94
1859 1966 1.386533 TCGCTGCTACTACTACCACC 58.613 55.000 0.00 0.00 0.00 4.61
1874 1981 2.611473 CCTGGATTTAGCATCGATCGCT 60.611 50.000 20.76 20.76 43.62 4.93
1876 1983 2.029020 TCCCTGGATTTAGCATCGATCG 60.029 50.000 9.36 9.36 0.00 3.69
1884 1991 2.947127 ATCTGCTCCCTGGATTTAGC 57.053 50.000 0.00 0.00 35.51 3.09
1887 1994 6.212388 CAGTAGTATATCTGCTCCCTGGATTT 59.788 42.308 0.00 0.00 37.01 2.17
1907 2014 4.058817 ACGAAGAACAAAGGAAGCAGTAG 58.941 43.478 0.00 0.00 0.00 2.57
1922 2029 6.092944 ACCGCAAAATATACATGAACGAAGAA 59.907 34.615 0.00 0.00 0.00 2.52
1927 2034 5.564768 TCAACCGCAAAATATACATGAACG 58.435 37.500 0.00 0.00 0.00 3.95
1968 2079 8.716674 AACTCCAAGGATTTTCATATGCATAT 57.283 30.769 13.63 13.63 0.00 1.78
1969 2080 8.537728 AAACTCCAAGGATTTTCATATGCATA 57.462 30.769 9.27 9.27 0.00 3.14
1970 2081 7.343833 AGAAACTCCAAGGATTTTCATATGCAT 59.656 33.333 24.73 3.79 42.47 3.96
1971 2082 6.664816 AGAAACTCCAAGGATTTTCATATGCA 59.335 34.615 24.73 0.00 42.47 3.96
1972 2083 7.105241 AGAAACTCCAAGGATTTTCATATGC 57.895 36.000 24.73 6.41 42.47 3.14
1973 2084 9.401058 AGTAGAAACTCCAAGGATTTTCATATG 57.599 33.333 24.73 0.00 42.47 1.78
1974 2085 9.401058 CAGTAGAAACTCCAAGGATTTTCATAT 57.599 33.333 24.73 12.87 42.47 1.78
1975 2086 8.602424 TCAGTAGAAACTCCAAGGATTTTCATA 58.398 33.333 24.73 15.25 42.47 2.15
1985 2101 5.059833 AGCAACTTCAGTAGAAACTCCAAG 58.940 41.667 0.00 0.00 31.97 3.61
1999 2115 2.201732 GACGACAGTGAAGCAACTTCA 58.798 47.619 5.94 5.94 46.50 3.02
2000 2116 1.190323 CGACGACAGTGAAGCAACTTC 59.810 52.381 0.00 0.32 40.54 3.01
2001 2117 1.209128 CGACGACAGTGAAGCAACTT 58.791 50.000 0.00 0.00 0.00 2.66
2002 2118 0.102481 ACGACGACAGTGAAGCAACT 59.898 50.000 0.00 0.00 0.00 3.16
2003 2119 0.928229 AACGACGACAGTGAAGCAAC 59.072 50.000 0.00 0.00 0.00 4.17
2044 2160 0.832135 GGACAGGACAGGACAGGACA 60.832 60.000 0.00 0.00 0.00 4.02
2045 2161 1.878656 CGGACAGGACAGGACAGGAC 61.879 65.000 0.00 0.00 0.00 3.85
2046 2162 1.606601 CGGACAGGACAGGACAGGA 60.607 63.158 0.00 0.00 0.00 3.86
2047 2163 2.650116 CCGGACAGGACAGGACAGG 61.650 68.421 0.00 0.00 45.00 4.00
2048 2164 1.599606 CTCCGGACAGGACAGGACAG 61.600 65.000 0.00 0.00 45.98 3.51
2069 2185 3.034635 GGGAGTATCTTTCTCTGCTGGA 58.965 50.000 0.00 0.00 33.73 3.86
2084 2200 0.858598 TCAGGGGAGAAGGGGGAGTA 60.859 60.000 0.00 0.00 0.00 2.59
2086 2202 1.690985 GTCAGGGGAGAAGGGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
2087 2203 2.454941 GTCAGGGGAGAAGGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
2088 2204 2.692741 GGTCAGGGGAGAAGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
2090 2206 1.997874 CAGGGTCAGGGGAGAAGGG 60.998 68.421 0.00 0.00 0.00 3.95
2091 2207 1.997874 CCAGGGTCAGGGGAGAAGG 60.998 68.421 0.00 0.00 0.00 3.46
2092 2208 0.547712 TTCCAGGGTCAGGGGAGAAG 60.548 60.000 0.00 0.00 31.19 2.85
2093 2209 0.840722 GTTCCAGGGTCAGGGGAGAA 60.841 60.000 0.00 0.00 31.19 2.87
2094 2210 1.229529 GTTCCAGGGTCAGGGGAGA 60.230 63.158 0.00 0.00 31.19 3.71
2095 2211 2.660064 CGTTCCAGGGTCAGGGGAG 61.660 68.421 0.00 0.00 31.19 4.30
2096 2212 2.471084 ATCGTTCCAGGGTCAGGGGA 62.471 60.000 0.00 0.00 0.00 4.81
2097 2213 1.562672 AATCGTTCCAGGGTCAGGGG 61.563 60.000 0.00 0.00 0.00 4.79
2098 2214 1.139058 CTAATCGTTCCAGGGTCAGGG 59.861 57.143 0.00 0.00 0.00 4.45
2099 2215 1.139058 CCTAATCGTTCCAGGGTCAGG 59.861 57.143 0.00 0.00 0.00 3.86
2100 2216 2.108168 TCCTAATCGTTCCAGGGTCAG 58.892 52.381 0.00 0.00 0.00 3.51
2101 2217 1.829222 GTCCTAATCGTTCCAGGGTCA 59.171 52.381 0.00 0.00 0.00 4.02
2102 2218 1.138464 GGTCCTAATCGTTCCAGGGTC 59.862 57.143 0.00 0.00 0.00 4.46
2103 2219 1.201424 GGTCCTAATCGTTCCAGGGT 58.799 55.000 0.00 0.00 0.00 4.34
2109 2225 1.140452 GGGGAAGGGTCCTAATCGTTC 59.860 57.143 0.00 0.00 44.28 3.95
2117 2233 0.550393 GAAGAAGGGGGAAGGGTCCT 60.550 60.000 0.00 0.00 44.28 3.85
2119 2235 1.572689 GGGAAGAAGGGGGAAGGGTC 61.573 65.000 0.00 0.00 0.00 4.46
2125 2241 1.162951 AGAGAGGGGAAGAAGGGGGA 61.163 60.000 0.00 0.00 0.00 4.81
2129 2245 1.007721 TGGAGAGAGAGGGGAAGAAGG 59.992 57.143 0.00 0.00 0.00 3.46
2143 2259 2.356069 TGACTGTTCGATCGATGGAGAG 59.644 50.000 20.18 14.26 0.00 3.20
2170 2286 6.142817 GTGTACCATCTCAAATTCACAACAC 58.857 40.000 0.00 0.00 0.00 3.32
2174 2290 4.000325 CCGTGTACCATCTCAAATTCACA 59.000 43.478 0.00 0.00 0.00 3.58
2175 2291 4.000988 ACCGTGTACCATCTCAAATTCAC 58.999 43.478 0.00 0.00 0.00 3.18
2176 2292 4.280436 ACCGTGTACCATCTCAAATTCA 57.720 40.909 0.00 0.00 0.00 2.57
2177 2293 5.220605 GCTTACCGTGTACCATCTCAAATTC 60.221 44.000 0.00 0.00 0.00 2.17
2178 2294 4.634443 GCTTACCGTGTACCATCTCAAATT 59.366 41.667 0.00 0.00 0.00 1.82
2179 2295 4.189231 GCTTACCGTGTACCATCTCAAAT 58.811 43.478 0.00 0.00 0.00 2.32
2180 2296 3.592059 GCTTACCGTGTACCATCTCAAA 58.408 45.455 0.00 0.00 0.00 2.69
2181 2297 2.093869 GGCTTACCGTGTACCATCTCAA 60.094 50.000 0.00 0.00 0.00 3.02
2182 2298 1.479323 GGCTTACCGTGTACCATCTCA 59.521 52.381 0.00 0.00 0.00 3.27
2183 2299 1.202498 GGGCTTACCGTGTACCATCTC 60.202 57.143 0.00 0.00 36.48 2.75
2184 2300 0.828677 GGGCTTACCGTGTACCATCT 59.171 55.000 0.00 0.00 36.48 2.90
2185 2301 0.538118 TGGGCTTACCGTGTACCATC 59.462 55.000 0.00 0.00 44.64 3.51
2186 2302 0.985760 TTGGGCTTACCGTGTACCAT 59.014 50.000 0.00 0.00 44.64 3.55
2187 2303 0.035176 GTTGGGCTTACCGTGTACCA 59.965 55.000 0.00 0.00 44.64 3.25
2188 2304 0.322648 AGTTGGGCTTACCGTGTACC 59.677 55.000 0.00 0.00 44.64 3.34
2189 2305 1.673923 GGAGTTGGGCTTACCGTGTAC 60.674 57.143 0.00 0.00 44.64 2.90
2190 2306 0.609662 GGAGTTGGGCTTACCGTGTA 59.390 55.000 0.00 0.00 44.64 2.90
2191 2307 1.125711 AGGAGTTGGGCTTACCGTGT 61.126 55.000 0.00 0.00 44.64 4.49
2192 2308 0.673644 CAGGAGTTGGGCTTACCGTG 60.674 60.000 0.00 0.00 44.64 4.94
2193 2309 1.677552 CAGGAGTTGGGCTTACCGT 59.322 57.895 0.00 0.00 44.64 4.83
2194 2310 1.745489 GCAGGAGTTGGGCTTACCG 60.745 63.158 0.00 0.00 44.64 4.02
2195 2311 1.745489 CGCAGGAGTTGGGCTTACC 60.745 63.158 0.00 0.00 40.81 2.85
2196 2312 3.890674 CGCAGGAGTTGGGCTTAC 58.109 61.111 0.00 0.00 32.60 2.34
2201 2317 2.032528 TGAAGCGCAGGAGTTGGG 59.967 61.111 11.47 0.00 42.32 4.12
2210 2326 4.201910 GCTATGAAATTTAGGTGAAGCGCA 60.202 41.667 11.47 0.00 0.00 6.09
2211 2327 4.201910 TGCTATGAAATTTAGGTGAAGCGC 60.202 41.667 0.00 0.00 0.00 5.92
2270 2386 5.806654 ACCGGTACTTTTGGACTAAGTTA 57.193 39.130 4.49 0.00 37.12 2.24
2276 2392 3.564053 TTCAACCGGTACTTTTGGACT 57.436 42.857 8.00 0.00 0.00 3.85
2343 2463 9.531942 CGGTTAAGGGTTTGTATTAAAGTTTTT 57.468 29.630 0.00 0.00 0.00 1.94
2344 2464 8.143193 CCGGTTAAGGGTTTGTATTAAAGTTTT 58.857 33.333 0.00 0.00 0.00 2.43
2345 2465 7.287466 ACCGGTTAAGGGTTTGTATTAAAGTTT 59.713 33.333 0.00 0.00 32.70 2.66
2346 2466 6.777091 ACCGGTTAAGGGTTTGTATTAAAGTT 59.223 34.615 0.00 0.00 32.70 2.66
2347 2467 6.306199 ACCGGTTAAGGGTTTGTATTAAAGT 58.694 36.000 0.00 0.00 32.70 2.66
2348 2468 6.822667 ACCGGTTAAGGGTTTGTATTAAAG 57.177 37.500 0.00 0.00 32.70 1.85
2349 2469 6.516360 GCAACCGGTTAAGGGTTTGTATTAAA 60.516 38.462 21.79 0.00 45.25 1.52
2350 2470 5.048154 GCAACCGGTTAAGGGTTTGTATTAA 60.048 40.000 21.79 0.00 45.25 1.40
2351 2471 4.458642 GCAACCGGTTAAGGGTTTGTATTA 59.541 41.667 21.79 0.00 45.25 0.98
2352 2472 3.256383 GCAACCGGTTAAGGGTTTGTATT 59.744 43.478 21.79 0.00 45.25 1.89
2353 2473 2.821378 GCAACCGGTTAAGGGTTTGTAT 59.179 45.455 21.79 0.00 45.25 2.29
2354 2474 2.228925 GCAACCGGTTAAGGGTTTGTA 58.771 47.619 21.79 0.00 45.25 2.41
2355 2475 1.034356 GCAACCGGTTAAGGGTTTGT 58.966 50.000 21.79 0.00 45.25 2.83
2356 2476 0.315886 GGCAACCGGTTAAGGGTTTG 59.684 55.000 21.79 6.92 45.25 2.93
2357 2477 1.174078 CGGCAACCGGTTAAGGGTTT 61.174 55.000 21.79 0.00 45.25 3.27
2390 2510 0.038526 ACGACAGGCAGTAAAGACGG 60.039 55.000 0.00 0.00 0.00 4.79
2412 2532 4.493747 GGACGAGGAAGACGGCGG 62.494 72.222 13.24 0.00 39.91 6.13
2414 2534 4.493747 CCGGACGAGGAAGACGGC 62.494 72.222 0.00 0.00 37.93 5.68
2499 2619 1.153429 GATACGTGGTCACAGGCCC 60.153 63.158 0.00 0.00 35.97 5.80
2502 2622 1.518572 GCCGATACGTGGTCACAGG 60.519 63.158 0.00 0.00 38.41 4.00
2597 2717 1.883275 CAATGGAACTTGGCGTTGGTA 59.117 47.619 0.00 0.00 35.56 3.25
2615 2735 0.325933 CCAGTGGGACAGAGATGCAA 59.674 55.000 0.00 0.00 41.80 4.08
2616 2736 1.985614 CCAGTGGGACAGAGATGCA 59.014 57.895 0.00 0.00 41.80 3.96
2617 2737 4.950479 CCAGTGGGACAGAGATGC 57.050 61.111 0.00 0.00 41.80 3.91
2628 2748 2.345760 GCCTTGATGTGCCCAGTGG 61.346 63.158 0.63 0.63 0.00 4.00
2629 2749 2.345760 GGCCTTGATGTGCCCAGTG 61.346 63.158 0.00 0.00 41.97 3.66
2630 2750 2.036256 GGCCTTGATGTGCCCAGT 59.964 61.111 0.00 0.00 41.97 4.00
2631 2751 3.136123 CGGCCTTGATGTGCCCAG 61.136 66.667 0.00 0.00 45.07 4.45
2632 2752 3.505790 AACGGCCTTGATGTGCCCA 62.506 57.895 0.00 0.00 45.07 5.36
2633 2753 2.676471 AACGGCCTTGATGTGCCC 60.676 61.111 0.00 0.00 45.07 5.36
2634 2754 2.700773 GGAACGGCCTTGATGTGCC 61.701 63.158 0.00 0.00 44.41 5.01
2635 2755 1.315257 ATGGAACGGCCTTGATGTGC 61.315 55.000 0.00 0.00 37.63 4.57
2636 2756 1.135315 CAATGGAACGGCCTTGATGTG 60.135 52.381 0.00 0.00 37.63 3.21
2637 2757 1.176527 CAATGGAACGGCCTTGATGT 58.823 50.000 0.00 0.00 37.63 3.06
2638 2758 0.179129 GCAATGGAACGGCCTTGATG 60.179 55.000 0.00 0.00 37.63 3.07
2639 2759 0.611618 TGCAATGGAACGGCCTTGAT 60.612 50.000 0.00 0.00 37.63 2.57
2640 2760 1.228398 TGCAATGGAACGGCCTTGA 60.228 52.632 0.00 0.00 37.63 3.02
2641 2761 1.080569 GTGCAATGGAACGGCCTTG 60.081 57.895 0.00 0.00 37.63 3.61
2642 2762 0.899717 ATGTGCAATGGAACGGCCTT 60.900 50.000 0.00 0.00 37.63 4.35
2643 2763 1.304381 ATGTGCAATGGAACGGCCT 60.304 52.632 0.00 0.00 37.63 5.19
2644 2764 1.139520 GATGTGCAATGGAACGGCC 59.860 57.895 0.00 0.00 37.10 6.13
2645 2765 0.243365 TTGATGTGCAATGGAACGGC 59.757 50.000 0.00 0.00 0.00 5.68
2646 2766 1.135315 CCTTGATGTGCAATGGAACGG 60.135 52.381 0.00 0.00 35.59 4.44
2647 2767 1.733389 GCCTTGATGTGCAATGGAACG 60.733 52.381 0.00 0.00 35.59 3.95
2648 2768 1.404583 GGCCTTGATGTGCAATGGAAC 60.405 52.381 0.00 0.00 35.59 3.62
2649 2769 0.896923 GGCCTTGATGTGCAATGGAA 59.103 50.000 0.00 0.00 35.59 3.53
2650 2770 1.314534 CGGCCTTGATGTGCAATGGA 61.315 55.000 0.00 0.00 35.59 3.41
2651 2771 1.140161 CGGCCTTGATGTGCAATGG 59.860 57.895 0.00 0.00 35.59 3.16
2652 2772 0.179156 GACGGCCTTGATGTGCAATG 60.179 55.000 0.00 0.00 35.59 2.82
2653 2773 1.315257 GGACGGCCTTGATGTGCAAT 61.315 55.000 0.00 0.00 35.59 3.56
2654 2774 1.971167 GGACGGCCTTGATGTGCAA 60.971 57.895 0.00 0.00 34.73 4.08
2655 2775 2.359850 GGACGGCCTTGATGTGCA 60.360 61.111 0.00 0.00 0.00 4.57
2656 2776 3.134127 GGGACGGCCTTGATGTGC 61.134 66.667 7.57 0.00 0.00 4.57
2657 2777 2.040544 GTGGGACGGCCTTGATGTG 61.041 63.158 7.57 0.00 0.00 3.21
2658 2778 2.224159 AGTGGGACGGCCTTGATGT 61.224 57.895 7.57 0.00 0.00 3.06
2659 2779 1.746615 CAGTGGGACGGCCTTGATG 60.747 63.158 7.57 0.00 0.00 3.07
2660 2780 2.671070 CAGTGGGACGGCCTTGAT 59.329 61.111 7.57 0.00 0.00 2.57
2661 2781 3.636231 CCAGTGGGACGGCCTTGA 61.636 66.667 7.57 0.00 35.59 3.02
2675 2795 4.803426 GAGTCCGAGCGTGCCCAG 62.803 72.222 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.