Multiple sequence alignment - TraesCS6B01G432500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G432500 chr6B 100.000 5626 0 0 1 5626 701862055 701867680 0.000000e+00 10390.0
1 TraesCS6B01G432500 chr6B 81.876 469 46 13 1417 1879 663798915 663798480 5.360000e-95 359.0
2 TraesCS6B01G432500 chr6B 100.000 35 0 0 5089 5123 701867050 701867084 1.310000e-06 65.8
3 TraesCS6B01G432500 chr6B 100.000 35 0 0 4996 5030 701867143 701867177 1.310000e-06 65.8
4 TraesCS6B01G432500 chr6D 95.485 2525 98 6 1 2513 460647632 460650152 0.000000e+00 4017.0
5 TraesCS6B01G432500 chr6D 93.704 1779 58 16 2511 4258 460650227 460651982 0.000000e+00 2615.0
6 TraesCS6B01G432500 chr6D 90.301 732 33 12 4241 4955 460651997 460652707 0.000000e+00 924.0
7 TraesCS6B01G432500 chr6D 88.587 552 31 13 5090 5626 460652945 460653479 4.750000e-180 641.0
8 TraesCS6B01G432500 chr6A 93.765 2534 120 17 1 2513 606960644 606963160 0.000000e+00 3770.0
9 TraesCS6B01G432500 chr6A 94.324 1621 60 10 3353 4955 606964089 606965695 0.000000e+00 2455.0
10 TraesCS6B01G432500 chr6A 96.694 847 23 3 2511 3356 606963222 606964064 0.000000e+00 1404.0
11 TraesCS6B01G432500 chr6A 81.693 579 52 35 5091 5626 606965944 606966511 3.110000e-117 433.0
12 TraesCS6B01G432500 chr3A 86.179 123 12 3 4463 4584 742440170 742440052 1.650000e-25 128.0
13 TraesCS6B01G432500 chr3A 73.090 301 69 10 1817 2108 742442472 742442175 4.640000e-16 97.1
14 TraesCS6B01G432500 chr3A 86.486 74 10 0 2881 2954 742441593 742441520 1.300000e-11 82.4
15 TraesCS6B01G432500 chr3D 76.630 184 38 4 1929 2108 609087675 609087493 4.640000e-16 97.1
16 TraesCS6B01G432500 chr3D 82.353 102 17 1 2853 2954 609086911 609086811 2.790000e-13 87.9
17 TraesCS6B01G432500 chr3B 73.106 264 66 4 1849 2108 819790811 819790549 7.760000e-14 89.8
18 TraesCS6B01G432500 chr3B 83.696 92 15 0 2863 2954 819789977 819789886 2.790000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G432500 chr6B 701862055 701867680 5625 False 3507.20 10390 100.00000 1 5626 3 chr6B.!!$F1 5625
1 TraesCS6B01G432500 chr6D 460647632 460653479 5847 False 2049.25 4017 92.01925 1 5626 4 chr6D.!!$F1 5625
2 TraesCS6B01G432500 chr6A 606960644 606966511 5867 False 2015.50 3770 91.61900 1 5626 4 chr6A.!!$F1 5625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 558 0.682855 AAACCACCCACACACACAGG 60.683 55.0 0.00 0.0 0.00 4.00 F
1452 1466 0.468214 TATCTGTGCCCCTCTCGGAG 60.468 60.0 0.00 0.0 0.00 4.63 F
1975 1989 0.106268 AAATCCACCAGGTGTGTGCA 60.106 50.0 18.82 0.0 43.85 4.57 F
2004 2018 0.253327 CTCAGGAAGTAAGGGTGGGC 59.747 60.0 0.00 0.0 0.00 5.36 F
2096 2110 0.908656 AGATGTGTGGAGAGCTGCCT 60.909 55.0 0.00 0.0 0.00 4.75 F
3146 3249 1.107114 TCCACGTTGGTGTTGCATTT 58.893 45.0 0.00 0.0 42.80 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 1747 0.665369 GTGTGGCTTGATGCACTTGC 60.665 55.0 0.00 0.00 45.15 4.01 R
3106 3209 0.822532 CAGGGAATGCCAGATCTGCC 60.823 60.0 17.76 12.07 35.15 4.85 R
3941 4079 0.404040 TTTGCCCGAAATCCCTCTGT 59.596 50.0 0.00 0.00 0.00 3.41 R
3999 4137 0.976641 TCCACAGCTTCCACCAGTAG 59.023 55.0 0.00 0.00 0.00 2.57 R
4028 4166 1.555477 CACAAACAAACCTGCCGAAC 58.445 50.0 0.00 0.00 0.00 3.95 R
4985 5173 0.036732 TTCCTGAGCACCACCACATC 59.963 55.0 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 103 5.705609 TCTACAAAAATTCCCTTCACAGC 57.294 39.130 0.00 0.00 0.00 4.40
114 118 2.872245 TCACAGCTGTCTTTGTTAGCAC 59.128 45.455 18.64 0.00 39.84 4.40
201 210 7.232737 TGTGTGTAGATAAATCACCCGATCTAT 59.767 37.037 0.00 0.00 34.35 1.98
254 263 1.400846 CGGCAGTGTGTAGATACGACT 59.599 52.381 0.00 0.00 0.00 4.18
270 279 4.271816 CTCCCGATCCGCTCCACG 62.272 72.222 0.00 0.00 43.15 4.94
288 297 2.983136 CACGATACGATCAATCTCTGCC 59.017 50.000 0.00 0.00 0.00 4.85
295 304 4.521146 ACGATCAATCTCTGCCATTTCTT 58.479 39.130 0.00 0.00 0.00 2.52
331 340 1.671979 TGTCTAGATACACGACCCGG 58.328 55.000 0.00 0.00 0.00 5.73
359 368 2.894126 CCAGATACCGCCAAGTCTCTAT 59.106 50.000 0.00 0.00 0.00 1.98
365 374 1.936547 CCGCCAAGTCTCTATTGCTTC 59.063 52.381 0.00 0.00 0.00 3.86
384 393 3.134574 TCTCCAAATTGTAACGGCAGT 57.865 42.857 0.00 0.00 0.00 4.40
387 396 1.883275 CCAAATTGTAACGGCAGTGGA 59.117 47.619 0.00 0.00 0.00 4.02
416 425 2.012673 GCACACAGATCTGGAATCACC 58.987 52.381 26.08 4.70 39.54 4.02
463 473 2.894765 CGGGGTTTTGGTGGATAAAAGT 59.105 45.455 0.00 0.00 0.00 2.66
546 558 0.682855 AAACCACCCACACACACAGG 60.683 55.000 0.00 0.00 0.00 4.00
565 577 2.305635 AGGCCCAAAAACCAAATCATCC 59.694 45.455 0.00 0.00 0.00 3.51
704 716 3.032609 CAGATCGGATCGGCGTGC 61.033 66.667 12.08 0.00 0.00 5.34
907 921 1.153353 TGCTTGTTCGATTTCGTCCC 58.847 50.000 0.00 0.00 40.80 4.46
941 955 2.046285 CCACCGACCTGCCCAATTC 61.046 63.158 0.00 0.00 0.00 2.17
1124 1138 8.854614 ACAGGCTCTTATACATATTTGATTCC 57.145 34.615 0.00 0.00 0.00 3.01
1149 1163 6.806249 CGTATTAAGCTTTCTTGGAAATGCAA 59.194 34.615 3.20 0.00 33.13 4.08
1181 1195 7.013655 GTCTGTATTGATGGCCAATTGTAATCT 59.986 37.037 10.96 0.00 42.55 2.40
1443 1457 1.672881 GCTGTGATTGTATCTGTGCCC 59.327 52.381 0.00 0.00 0.00 5.36
1452 1466 0.468214 TATCTGTGCCCCTCTCGGAG 60.468 60.000 0.00 0.00 0.00 4.63
1490 1504 2.758979 GACAGAGGACTTATCGACCCAA 59.241 50.000 0.00 0.00 0.00 4.12
1511 1525 6.150976 CCCAAAATGTTGCTGATACAGTAGAA 59.849 38.462 0.00 0.00 33.43 2.10
1733 1747 1.920574 CCGACATCAGCAGACGTTAAG 59.079 52.381 0.00 0.00 0.00 1.85
1764 1778 1.382522 AGCCACACCTGCAATAATCG 58.617 50.000 0.00 0.00 0.00 3.34
1827 1841 3.136443 GGTTGACACCATGGATCTGGATA 59.864 47.826 21.47 0.00 43.61 2.59
1904 1918 4.299586 TGACAATGGCCATAACTCTTCA 57.700 40.909 21.15 12.07 0.00 3.02
1975 1989 0.106268 AAATCCACCAGGTGTGTGCA 60.106 50.000 18.82 0.00 43.85 4.57
1994 2008 1.004044 CATCCAAGCACCTCAGGAAGT 59.996 52.381 0.00 0.00 33.17 3.01
2003 2017 0.912486 CCTCAGGAAGTAAGGGTGGG 59.088 60.000 0.00 0.00 0.00 4.61
2004 2018 0.253327 CTCAGGAAGTAAGGGTGGGC 59.747 60.000 0.00 0.00 0.00 5.36
2096 2110 0.908656 AGATGTGTGGAGAGCTGCCT 60.909 55.000 0.00 0.00 0.00 4.75
2139 2153 3.173151 TCTTTATGTCCTCCACAGCTCA 58.827 45.455 0.00 0.00 38.85 4.26
2159 2173 8.233190 CAGCTCAGTAGTTTCCATAAAAAGAAG 58.767 37.037 0.00 0.00 0.00 2.85
2179 2193 7.778470 AGAAGGATATTTCTTTTGCTACTCG 57.222 36.000 0.00 0.00 33.74 4.18
2256 2275 4.530553 TCTTATGGAAACTGTGGAGCTGTA 59.469 41.667 0.00 0.00 0.00 2.74
2280 2299 6.752168 AGAGGAAATGAAAATCAACCACTTG 58.248 36.000 0.00 0.00 0.00 3.16
2350 2374 9.423061 GGAATTGTGCTGAATAGTGTTATTTTT 57.577 29.630 0.00 0.00 29.67 1.94
2627 2729 4.694760 TGATGCACAGTATTGGATAGCT 57.305 40.909 0.00 0.00 0.00 3.32
2805 2907 9.976511 TCCTGGATATTTTCTGTAGTATTTACG 57.023 33.333 0.00 0.00 0.00 3.18
2851 2953 8.858003 TTCTTCGACATGATGACTTACTATTC 57.142 34.615 0.00 0.00 31.07 1.75
3106 3209 3.056179 AGTTGTTTGTGGAAAACCAGTGG 60.056 43.478 7.91 7.91 0.00 4.00
3146 3249 1.107114 TCCACGTTGGTGTTGCATTT 58.893 45.000 0.00 0.00 42.80 2.32
3159 3262 6.922957 TGGTGTTGCATTTCAGAATTAAGAAC 59.077 34.615 0.00 0.00 0.00 3.01
3328 3431 5.530915 TGTATTACCATAATTGCTCTGCACC 59.469 40.000 0.00 0.00 38.71 5.01
3428 3559 1.347707 TCAGTGTGCTACTTCAAGGGG 59.652 52.381 0.00 0.00 37.60 4.79
3596 3727 1.398390 GTCCATCTGTTGTGAATCCGC 59.602 52.381 0.00 0.00 0.00 5.54
3598 3729 2.499693 TCCATCTGTTGTGAATCCGCTA 59.500 45.455 0.00 0.00 0.00 4.26
3653 3791 7.147143 TCTCGCACTATTATACTGGAGATTC 57.853 40.000 0.00 0.00 0.00 2.52
3658 3796 6.254589 GCACTATTATACTGGAGATTCGCATC 59.745 42.308 0.00 0.00 0.00 3.91
3941 4079 1.142870 CCAGTTGTTCCCAGGTCAAGA 59.857 52.381 0.00 0.00 0.00 3.02
3950 4088 1.577736 CCAGGTCAAGACAGAGGGAT 58.422 55.000 2.29 0.00 0.00 3.85
3999 4137 2.743928 CCGTTGCTGAGGTGGAGC 60.744 66.667 0.00 0.00 36.95 4.70
4001 4139 1.591703 CGTTGCTGAGGTGGAGCTA 59.408 57.895 0.00 0.00 37.35 3.32
4028 4166 3.060615 GCTGTGGAGCTGCTTGGG 61.061 66.667 6.82 0.00 42.52 4.12
4095 4233 1.200716 CAGCGCAGATCACACCATTTT 59.799 47.619 11.47 0.00 0.00 1.82
4120 4258 5.988561 GTCTCATGTGACCCATCTTTATCTC 59.011 44.000 15.51 0.00 0.00 2.75
4123 4261 6.586344 TCATGTGACCCATCTTTATCTCTTC 58.414 40.000 0.00 0.00 0.00 2.87
4222 4360 0.319555 CTCGAAAACGGCTCAGTGGA 60.320 55.000 0.00 0.00 0.00 4.02
4281 4451 1.001764 TGGCACTGCTCCATTCCAG 60.002 57.895 0.00 0.00 35.26 3.86
4289 4459 0.871057 GCTCCATTCCAGCGCTAATC 59.129 55.000 10.99 0.00 0.00 1.75
4293 4463 0.947244 CATTCCAGCGCTAATCACCC 59.053 55.000 10.99 0.00 0.00 4.61
4301 4471 4.929707 CTAATCACCCCGCCGCCC 62.930 72.222 0.00 0.00 0.00 6.13
4316 4486 3.142393 CCCGATGCTCCCCTGTAG 58.858 66.667 0.00 0.00 0.00 2.74
4357 4527 2.002586 CGTATCTTTCTGCCAGTGTGG 58.997 52.381 0.00 0.00 41.55 4.17
4366 4536 0.038599 TGCCAGTGTGGATGAAGCAT 59.961 50.000 0.00 0.00 40.96 3.79
4438 4608 6.075762 ACCCTGTTATTCGTTGTTAAAACC 57.924 37.500 0.00 0.00 0.00 3.27
4617 4787 4.516195 GCGACGAGGAGGAAGGCC 62.516 72.222 0.00 0.00 0.00 5.19
4628 4798 0.396001 AGGAAGGCCGAGACTAGACC 60.396 60.000 0.00 0.00 39.96 3.85
4646 4816 2.194212 CGACCGATCCGTCCATCCT 61.194 63.158 8.37 0.00 0.00 3.24
4648 4818 1.807495 GACCGATCCGTCCATCCTCC 61.807 65.000 3.07 0.00 0.00 4.30
4649 4819 2.574955 CCGATCCGTCCATCCTCCC 61.575 68.421 0.00 0.00 0.00 4.30
4650 4820 2.574955 CGATCCGTCCATCCTCCCC 61.575 68.421 0.00 0.00 0.00 4.81
4651 4821 2.524394 ATCCGTCCATCCTCCCCG 60.524 66.667 0.00 0.00 0.00 5.73
4652 4822 3.390671 ATCCGTCCATCCTCCCCGT 62.391 63.158 0.00 0.00 0.00 5.28
4653 4823 3.849951 CCGTCCATCCTCCCCGTG 61.850 72.222 0.00 0.00 0.00 4.94
4654 4824 3.075005 CGTCCATCCTCCCCGTGT 61.075 66.667 0.00 0.00 0.00 4.49
4655 4825 1.755395 CGTCCATCCTCCCCGTGTA 60.755 63.158 0.00 0.00 0.00 2.90
4656 4826 1.324740 CGTCCATCCTCCCCGTGTAA 61.325 60.000 0.00 0.00 0.00 2.41
4691 4862 5.360591 AGAGAGAAAGAGAAACGAAGCAAA 58.639 37.500 0.00 0.00 0.00 3.68
4728 4899 2.995283 TGCTGGATGAGAGTCAAATGG 58.005 47.619 0.00 0.00 0.00 3.16
4750 4937 0.535335 ATGTGTGTACCTAGGGTGCG 59.465 55.000 14.81 0.00 41.19 5.34
4815 5002 7.438459 GCGACTGTTATGTATGGTTTCTATCTT 59.562 37.037 0.00 0.00 0.00 2.40
4816 5003 9.961265 CGACTGTTATGTATGGTTTCTATCTTA 57.039 33.333 0.00 0.00 0.00 2.10
4833 5020 8.160521 TCTATCTTAGTAGATTGTCAGTCAGC 57.839 38.462 0.00 0.00 41.38 4.26
4867 5054 1.878102 CGGTTCTGTCTGGGTTTGAGG 60.878 57.143 0.00 0.00 0.00 3.86
4869 5056 2.495084 GTTCTGTCTGGGTTTGAGGAC 58.505 52.381 0.00 0.00 0.00 3.85
4877 5065 1.780309 TGGGTTTGAGGACCAATCTGT 59.220 47.619 0.00 0.00 41.65 3.41
4950 5138 0.676184 TGCCTGTCTGTCTGTCTGTC 59.324 55.000 0.00 0.00 0.00 3.51
4955 5143 2.884012 CTGTCTGTCTGTCTGTCTGTCT 59.116 50.000 0.00 0.00 0.00 3.41
4956 5144 2.620585 TGTCTGTCTGTCTGTCTGTCTG 59.379 50.000 0.00 0.00 0.00 3.51
4958 5146 2.881513 TCTGTCTGTCTGTCTGTCTGTC 59.118 50.000 0.00 0.00 0.00 3.51
4959 5147 2.884012 CTGTCTGTCTGTCTGTCTGTCT 59.116 50.000 0.00 0.00 0.00 3.41
4960 5148 2.881513 TGTCTGTCTGTCTGTCTGTCTC 59.118 50.000 0.00 0.00 0.00 3.36
4961 5149 2.881513 GTCTGTCTGTCTGTCTGTCTCA 59.118 50.000 0.00 0.00 0.00 3.27
4962 5150 3.505680 GTCTGTCTGTCTGTCTGTCTCAT 59.494 47.826 0.00 0.00 0.00 2.90
4963 5151 3.505293 TCTGTCTGTCTGTCTGTCTCATG 59.495 47.826 0.00 0.00 0.00 3.07
4967 5155 4.157472 GTCTGTCTGTCTGTCTCATGATGA 59.843 45.833 0.00 0.00 0.00 2.92
4970 5158 4.465305 TGTCTGTCTGTCTCATGATGATGT 59.535 41.667 0.00 0.00 0.00 3.06
4971 5159 5.042593 GTCTGTCTGTCTCATGATGATGTC 58.957 45.833 0.00 0.00 0.00 3.06
4972 5160 4.954826 TCTGTCTGTCTCATGATGATGTCT 59.045 41.667 0.00 0.00 0.00 3.41
4973 5161 6.039159 GTCTGTCTGTCTCATGATGATGTCTA 59.961 42.308 0.00 0.00 0.00 2.59
4975 5163 6.746120 TGTCTGTCTCATGATGATGTCTATG 58.254 40.000 0.00 0.00 0.00 2.23
4976 5164 6.548622 TGTCTGTCTCATGATGATGTCTATGA 59.451 38.462 0.00 0.00 0.00 2.15
4977 5165 7.085746 GTCTGTCTCATGATGATGTCTATGAG 58.914 42.308 0.00 0.00 40.26 2.90
4978 5166 7.002879 TCTGTCTCATGATGATGTCTATGAGA 58.997 38.462 10.70 10.70 42.51 3.27
4979 5167 7.175293 TCTGTCTCATGATGATGTCTATGAGAG 59.825 40.741 14.10 6.16 43.73 3.20
4981 5169 5.715753 TCTCATGATGATGTCTATGAGAGGG 59.284 44.000 10.70 0.00 41.37 4.30
4982 5170 5.648247 TCATGATGATGTCTATGAGAGGGA 58.352 41.667 0.00 0.00 0.00 4.20
4983 5171 5.715753 TCATGATGATGTCTATGAGAGGGAG 59.284 44.000 0.00 0.00 0.00 4.30
4985 5173 3.251016 TGATGTCTATGAGAGGGAGGG 57.749 52.381 0.00 0.00 0.00 4.30
4986 5174 2.791774 TGATGTCTATGAGAGGGAGGGA 59.208 50.000 0.00 0.00 0.00 4.20
4987 5175 3.404081 TGATGTCTATGAGAGGGAGGGAT 59.596 47.826 0.00 0.00 0.00 3.85
4988 5176 3.251016 TGTCTATGAGAGGGAGGGATG 57.749 52.381 0.00 0.00 0.00 3.51
4989 5177 2.520120 TGTCTATGAGAGGGAGGGATGT 59.480 50.000 0.00 0.00 0.00 3.06
4990 5178 2.896685 GTCTATGAGAGGGAGGGATGTG 59.103 54.545 0.00 0.00 0.00 3.21
4992 5180 0.344790 ATGAGAGGGAGGGATGTGGT 59.655 55.000 0.00 0.00 0.00 4.16
4993 5181 0.618680 TGAGAGGGAGGGATGTGGTG 60.619 60.000 0.00 0.00 0.00 4.17
4996 5184 1.915078 GAGGGAGGGATGTGGTGGTG 61.915 65.000 0.00 0.00 0.00 4.17
4997 5185 2.044946 GGAGGGATGTGGTGGTGC 60.045 66.667 0.00 0.00 0.00 5.01
4998 5186 2.606587 GGAGGGATGTGGTGGTGCT 61.607 63.158 0.00 0.00 0.00 4.40
4999 5187 1.078143 GAGGGATGTGGTGGTGCTC 60.078 63.158 0.00 0.00 0.00 4.26
5000 5188 1.841302 GAGGGATGTGGTGGTGCTCA 61.841 60.000 0.00 0.00 0.00 4.26
5001 5189 1.377725 GGGATGTGGTGGTGCTCAG 60.378 63.158 0.00 0.00 0.00 3.35
5002 5190 1.377725 GGATGTGGTGGTGCTCAGG 60.378 63.158 0.00 0.00 0.00 3.86
5003 5191 1.679311 GATGTGGTGGTGCTCAGGA 59.321 57.895 0.00 0.00 0.00 3.86
5004 5192 0.036732 GATGTGGTGGTGCTCAGGAA 59.963 55.000 0.00 0.00 0.00 3.36
5005 5193 0.478072 ATGTGGTGGTGCTCAGGAAA 59.522 50.000 0.00 0.00 0.00 3.13
5008 5196 2.290260 TGTGGTGGTGCTCAGGAAATAG 60.290 50.000 0.00 0.00 0.00 1.73
5009 5197 1.281867 TGGTGGTGCTCAGGAAATAGG 59.718 52.381 0.00 0.00 0.00 2.57
5012 5200 3.421844 GTGGTGCTCAGGAAATAGGTTT 58.578 45.455 0.00 0.00 0.00 3.27
5015 5203 3.367395 GGTGCTCAGGAAATAGGTTTTGC 60.367 47.826 0.00 0.00 0.00 3.68
5016 5204 3.507622 GTGCTCAGGAAATAGGTTTTGCT 59.492 43.478 0.00 0.00 0.00 3.91
5020 5208 3.258123 TCAGGAAATAGGTTTTGCTTGGC 59.742 43.478 0.00 0.00 0.00 4.52
5024 5293 2.252535 ATAGGTTTTGCTTGGCCCAT 57.747 45.000 0.00 0.00 0.00 4.00
5026 5295 1.139439 AGGTTTTGCTTGGCCCATTT 58.861 45.000 0.00 0.00 0.00 2.32
5029 5298 1.608109 GTTTTGCTTGGCCCATTTTGG 59.392 47.619 0.00 0.00 37.25 3.28
5036 5305 2.629336 TGGCCCATTTTGGTTGTTTC 57.371 45.000 0.00 0.00 35.17 2.78
5038 5307 1.507562 GCCCATTTTGGTTGTTTCCG 58.492 50.000 0.00 0.00 35.17 4.30
5042 5311 2.159028 CCATTTTGGTTGTTTCCGGTGT 60.159 45.455 0.00 0.00 31.35 4.16
5045 5314 0.818296 TTGGTTGTTTCCGGTGTTGG 59.182 50.000 0.00 0.00 0.00 3.77
5046 5315 0.323542 TGGTTGTTTCCGGTGTTGGT 60.324 50.000 0.00 0.00 0.00 3.67
5051 5320 1.314730 GTTTCCGGTGTTGGTGTGAT 58.685 50.000 0.00 0.00 0.00 3.06
5058 5339 1.535462 GGTGTTGGTGTGATGTAGCAC 59.465 52.381 0.00 0.00 39.22 4.40
5093 5413 2.275134 TGCCAACATTTCTCTGCTCA 57.725 45.000 0.00 0.00 0.00 4.26
5103 5423 5.045286 ACATTTCTCTGCTCAGGAAATAGGT 60.045 40.000 17.64 13.05 36.80 3.08
5104 5424 5.505181 TTTCTCTGCTCAGGAAATAGGTT 57.495 39.130 8.46 0.00 0.00 3.50
5113 5433 3.258123 TCAGGAAATAGGTTTTGCTTGGC 59.742 43.478 0.00 0.00 0.00 4.52
5156 5485 3.737702 ACCTTTGCGGTGTTGGTAT 57.262 47.368 0.00 0.00 46.80 2.73
5157 5486 1.243902 ACCTTTGCGGTGTTGGTATG 58.756 50.000 0.00 0.00 46.80 2.39
5185 5514 9.910267 TGATATATGTAGCATAGAAATGGCAAT 57.090 29.630 0.00 0.00 33.38 3.56
5246 5593 1.448013 GGGGCGTACAGTGAAGCTC 60.448 63.158 0.00 0.00 0.00 4.09
5251 5598 1.805945 GTACAGTGAAGCTCGGCCG 60.806 63.158 22.12 22.12 0.00 6.13
5297 5644 0.322456 CAATTGGGGAAGGCGTCAGA 60.322 55.000 2.23 0.00 0.00 3.27
5346 5693 0.670546 GCCCATGTGGATACGGATCG 60.671 60.000 0.44 0.00 42.51 3.69
5347 5694 0.966179 CCCATGTGGATACGGATCGA 59.034 55.000 0.44 0.00 42.51 3.59
5353 5705 3.483421 TGTGGATACGGATCGACATAGT 58.517 45.455 20.28 0.00 43.46 2.12
5527 5907 1.403687 CCTCTTCATCCGTCCTCCCC 61.404 65.000 0.00 0.00 0.00 4.81
5539 5919 2.351276 CTCCCCACCTTTCACCGG 59.649 66.667 0.00 0.00 0.00 5.28
5562 5942 0.109723 TTCTCGGTTTTCCACCCCTG 59.890 55.000 0.00 0.00 43.83 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.633789 AGAGGGATAATGTGACAATTGTAGTT 58.366 34.615 11.95 6.75 0.00 2.24
87 90 2.092429 ACAAAGACAGCTGTGAAGGGAA 60.092 45.455 27.27 0.00 33.37 3.97
99 103 3.733337 ACTCCTGTGCTAACAAAGACAG 58.267 45.455 0.00 0.00 35.37 3.51
114 118 2.755929 GGAGCGCAACTTACTCCTG 58.244 57.895 11.47 0.00 45.44 3.86
171 176 4.513442 GGTGATTTATCTACACACAGCCA 58.487 43.478 0.00 0.00 36.42 4.75
173 178 3.555956 CGGGTGATTTATCTACACACAGC 59.444 47.826 0.00 0.00 37.75 4.40
175 180 5.362717 AGATCGGGTGATTTATCTACACACA 59.637 40.000 0.00 0.00 37.75 3.72
201 210 5.048782 CGGAGAAACAATGAAGATTTGGTCA 60.049 40.000 0.00 0.00 0.00 4.02
254 263 2.685804 TATCGTGGAGCGGATCGGGA 62.686 60.000 2.13 0.00 41.72 5.14
270 279 5.931146 AGAAATGGCAGAGATTGATCGTATC 59.069 40.000 0.00 0.56 0.00 2.24
331 340 1.068250 GGCGGTATCTGGAGCAGAC 59.932 63.158 0.00 0.00 43.63 3.51
359 368 3.305064 GCCGTTACAATTTGGAGAAGCAA 60.305 43.478 0.78 0.00 0.00 3.91
365 374 2.095263 CCACTGCCGTTACAATTTGGAG 60.095 50.000 0.78 0.00 0.00 3.86
384 393 5.010415 CAGATCTGTGTGCTGTATCTATCCA 59.990 44.000 14.95 0.00 0.00 3.41
387 396 5.143369 TCCAGATCTGTGTGCTGTATCTAT 58.857 41.667 21.11 0.00 0.00 1.98
463 473 1.580059 CCTAGCACCACTTTCCCCTA 58.420 55.000 0.00 0.00 0.00 3.53
546 558 2.028567 TCGGATGATTTGGTTTTTGGGC 60.029 45.455 0.00 0.00 0.00 5.36
907 921 2.021457 GGTGGGGTTTATCCAATCGTG 58.979 52.381 0.00 0.00 35.86 4.35
1055 1069 2.567049 CCAGAGTCGTGTCCCGTC 59.433 66.667 0.00 0.00 37.94 4.79
1124 1138 6.321717 TGCATTTCCAAGAAAGCTTAATACG 58.678 36.000 0.00 0.00 31.81 3.06
1149 1163 3.299503 GGCCATCAATACAGACCCAAAT 58.700 45.455 0.00 0.00 0.00 2.32
1181 1195 1.302511 GGAGCGCTTCACCTGGAAA 60.303 57.895 13.26 0.00 34.44 3.13
1359 1373 3.207669 GAGCTGCGGGGCTTCATG 61.208 66.667 0.00 0.00 43.20 3.07
1431 1445 2.504920 CGAGAGGGGCACAGATACA 58.495 57.895 0.00 0.00 0.00 2.29
1443 1457 6.838991 GCGTATGCTAGTTTCTCCGAGAGG 62.839 54.167 0.00 0.00 46.43 3.69
1452 1466 4.174009 TCTGTCTTGCGTATGCTAGTTTC 58.826 43.478 16.35 9.87 43.30 2.78
1490 1504 5.882557 CCCTTCTACTGTATCAGCAACATTT 59.117 40.000 0.00 0.00 34.37 2.32
1511 1525 4.783227 TCTGCCTTTTCTATTAGTGACCCT 59.217 41.667 0.00 0.00 0.00 4.34
1583 1597 4.880696 ACATCTGGCTTCTTTTCTATCAGC 59.119 41.667 0.00 0.00 0.00 4.26
1694 1708 2.031870 GGGAAACAAGGATGGCATACC 58.968 52.381 5.96 6.96 0.00 2.73
1733 1747 0.665369 GTGTGGCTTGATGCACTTGC 60.665 55.000 0.00 0.00 45.15 4.01
1764 1778 3.209410 CATTGCCATCTACCAGACTTCC 58.791 50.000 0.00 0.00 0.00 3.46
1827 1841 6.716628 TCAGAATTAAGCACAGAAGGTTTGAT 59.283 34.615 0.00 0.00 0.00 2.57
1898 1912 4.141937 TGAACCGGATAGAATGGTGAAGAG 60.142 45.833 9.46 0.00 35.79 2.85
1899 1913 3.772572 TGAACCGGATAGAATGGTGAAGA 59.227 43.478 9.46 0.00 35.79 2.87
1904 1918 3.873910 CACTTGAACCGGATAGAATGGT 58.126 45.455 9.46 0.00 37.68 3.55
1975 1989 1.366319 ACTTCCTGAGGTGCTTGGAT 58.634 50.000 0.00 0.00 0.00 3.41
1994 2008 2.917713 ATGACAAATGCCCACCCTTA 57.082 45.000 0.00 0.00 0.00 2.69
2003 2017 7.088589 ACAGTCACCTTTATATGACAAATGC 57.911 36.000 7.10 0.00 46.34 3.56
2004 2018 9.599866 TCTACAGTCACCTTTATATGACAAATG 57.400 33.333 7.10 0.01 46.34 2.32
2110 2124 5.248248 TGTGGAGGACATAAAGATCAACTCA 59.752 40.000 0.00 0.00 0.00 3.41
2159 2173 9.424319 TGATATCGAGTAGCAAAAGAAATATCC 57.576 33.333 0.00 0.00 0.00 2.59
2215 2229 7.766278 TCCATAAGAAATGAACTCTTGCTACTC 59.234 37.037 0.00 0.00 34.90 2.59
2230 2249 5.416952 CAGCTCCACAGTTTCCATAAGAAAT 59.583 40.000 0.00 0.00 45.99 2.17
2256 2275 6.739565 GCAAGTGGTTGATTTTCATTTCCTCT 60.740 38.462 0.00 0.00 35.46 3.69
2350 2374 4.276431 CCACCGAACTTGCTACCTTTAAAA 59.724 41.667 0.00 0.00 0.00 1.52
2627 2729 6.713450 GGAAGTATACCAAAACAGGAAGTGAA 59.287 38.462 0.00 0.00 0.00 3.18
2815 2917 7.927629 TCATCATGTCGAAGAATCACATAATGA 59.072 33.333 0.00 0.00 43.13 2.57
2821 2923 5.077134 AGTCATCATGTCGAAGAATCACA 57.923 39.130 0.00 0.00 39.69 3.58
2851 2953 7.913297 TGAACTTGACTGGAAATAAACGAAAAG 59.087 33.333 0.00 0.00 0.00 2.27
2995 3098 5.631026 CACATTGAGTGTATGGTTGCTAAC 58.369 41.667 0.00 0.00 43.40 2.34
3071 3174 9.967451 TTCCACAAACAACTATTGGAGATAATA 57.033 29.630 0.00 0.00 37.64 0.98
3106 3209 0.822532 CAGGGAATGCCAGATCTGCC 60.823 60.000 17.76 12.07 35.15 4.85
3146 3249 6.092122 CAGCGGTAATGTGTTCTTAATTCTGA 59.908 38.462 0.00 0.00 0.00 3.27
3159 3262 4.861462 CAGCTAGATATCAGCGGTAATGTG 59.139 45.833 16.42 7.96 43.97 3.21
3295 3398 9.407380 AGCAATTATGGTAATACATCAAGACAA 57.593 29.630 0.00 0.00 34.98 3.18
3428 3559 8.486383 CGTCTTATTGTCATCTTGAATGATCTC 58.514 37.037 0.00 0.00 0.00 2.75
3596 3727 7.384387 GGCTTTATGGGTAACTTACTTCGATAG 59.616 40.741 0.00 0.00 0.00 2.08
3598 3729 6.053650 GGCTTTATGGGTAACTTACTTCGAT 58.946 40.000 0.00 0.00 0.00 3.59
3658 3796 7.969536 TTCTTCTTTCTGATCAGTAAACCTG 57.030 36.000 21.92 7.53 42.97 4.00
3691 3829 4.614306 CGAAACATCTGCAAAGCATCTTGA 60.614 41.667 0.00 0.00 38.13 3.02
3941 4079 0.404040 TTTGCCCGAAATCCCTCTGT 59.596 50.000 0.00 0.00 0.00 3.41
3950 4088 1.858372 GCTTACGCCTTTGCCCGAAA 61.858 55.000 0.00 0.00 0.00 3.46
3999 4137 0.976641 TCCACAGCTTCCACCAGTAG 59.023 55.000 0.00 0.00 0.00 2.57
4001 4139 1.757306 CTCCACAGCTTCCACCAGT 59.243 57.895 0.00 0.00 0.00 4.00
4028 4166 1.555477 CACAAACAAACCTGCCGAAC 58.445 50.000 0.00 0.00 0.00 3.95
4095 4233 5.426509 AGATAAAGATGGGTCACATGAGACA 59.573 40.000 22.31 5.85 40.72 3.41
4205 4343 0.941542 TTTCCACTGAGCCGTTTTCG 59.058 50.000 0.00 0.00 43.67 3.46
4236 4374 0.107456 AAGATGGTGATGGCTAGCGG 59.893 55.000 9.00 0.00 0.00 5.52
4301 4471 0.600557 CTAGCTACAGGGGAGCATCG 59.399 60.000 2.90 0.00 42.69 3.84
4316 4486 0.890683 ATGGCAAACAAGTGGCTAGC 59.109 50.000 6.04 6.04 44.15 3.42
4357 4527 6.545298 AGAGGAGTAAAATCCAATGCTTCATC 59.455 38.462 0.00 0.00 42.26 2.92
4366 4536 6.213397 TGATCTGACAGAGGAGTAAAATCCAA 59.787 38.462 11.52 0.00 42.26 3.53
4463 4633 1.421646 AGGTTCTTCCACTTGTCCTGG 59.578 52.381 0.00 0.00 39.02 4.45
4617 4787 0.860533 GATCGGTCGGTCTAGTCTCG 59.139 60.000 0.00 0.00 0.00 4.04
4628 4798 2.131294 GAGGATGGACGGATCGGTCG 62.131 65.000 22.61 7.70 37.82 4.79
4728 4899 2.356135 CACCCTAGGTACACACATTGC 58.644 52.381 8.29 0.00 32.11 3.56
4815 5002 5.738619 TTTGGCTGACTGACAATCTACTA 57.261 39.130 0.95 0.00 44.24 1.82
4816 5003 4.623932 TTTGGCTGACTGACAATCTACT 57.376 40.909 0.95 0.00 44.24 2.57
4817 5004 4.083271 GGTTTTGGCTGACTGACAATCTAC 60.083 45.833 0.95 1.54 44.24 2.59
4818 5005 4.072131 GGTTTTGGCTGACTGACAATCTA 58.928 43.478 0.95 0.00 44.24 1.98
4847 5034 1.512926 CTCAAACCCAGACAGAACCG 58.487 55.000 0.00 0.00 0.00 4.44
4867 5054 3.596214 ACATACACCGAACAGATTGGTC 58.404 45.455 0.00 0.00 32.48 4.02
4869 5056 5.175859 AGTTACATACACCGAACAGATTGG 58.824 41.667 0.00 0.00 0.00 3.16
4933 5121 1.959985 ACAGACAGACAGACAGACAGG 59.040 52.381 0.00 0.00 0.00 4.00
4950 5138 5.265350 AGACATCATCATGAGACAGACAG 57.735 43.478 0.09 0.00 33.72 3.51
4955 5143 6.208994 CCTCTCATAGACATCATCATGAGACA 59.791 42.308 0.09 0.00 41.71 3.41
4956 5144 6.350361 CCCTCTCATAGACATCATCATGAGAC 60.350 46.154 0.09 0.00 41.71 3.36
4958 5146 5.715753 TCCCTCTCATAGACATCATCATGAG 59.284 44.000 0.09 4.43 40.58 2.90
4959 5147 5.648247 TCCCTCTCATAGACATCATCATGA 58.352 41.667 0.00 0.00 33.72 3.07
4960 5148 5.105269 CCTCCCTCTCATAGACATCATCATG 60.105 48.000 0.00 0.00 35.92 3.07
4961 5149 5.024785 CCTCCCTCTCATAGACATCATCAT 58.975 45.833 0.00 0.00 0.00 2.45
4962 5150 4.414677 CCTCCCTCTCATAGACATCATCA 58.585 47.826 0.00 0.00 0.00 3.07
4963 5151 3.768757 CCCTCCCTCTCATAGACATCATC 59.231 52.174 0.00 0.00 0.00 2.92
4967 5155 3.143741 ACATCCCTCCCTCTCATAGACAT 59.856 47.826 0.00 0.00 0.00 3.06
4970 5158 2.158249 CCACATCCCTCCCTCTCATAGA 60.158 54.545 0.00 0.00 0.00 1.98
4971 5159 2.255406 CCACATCCCTCCCTCTCATAG 58.745 57.143 0.00 0.00 0.00 2.23
4972 5160 1.580658 ACCACATCCCTCCCTCTCATA 59.419 52.381 0.00 0.00 0.00 2.15
4973 5161 0.344790 ACCACATCCCTCCCTCTCAT 59.655 55.000 0.00 0.00 0.00 2.90
4975 5163 1.341156 CCACCACATCCCTCCCTCTC 61.341 65.000 0.00 0.00 0.00 3.20
4976 5164 1.307343 CCACCACATCCCTCCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
4977 5165 1.616628 ACCACCACATCCCTCCCTC 60.617 63.158 0.00 0.00 0.00 4.30
4978 5166 1.925455 CACCACCACATCCCTCCCT 60.925 63.158 0.00 0.00 0.00 4.20
4979 5167 2.677228 CACCACCACATCCCTCCC 59.323 66.667 0.00 0.00 0.00 4.30
4981 5169 1.078143 GAGCACCACCACATCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
4982 5170 1.845627 CTGAGCACCACCACATCCCT 61.846 60.000 0.00 0.00 0.00 4.20
4983 5171 1.377725 CTGAGCACCACCACATCCC 60.378 63.158 0.00 0.00 0.00 3.85
4985 5173 0.036732 TTCCTGAGCACCACCACATC 59.963 55.000 0.00 0.00 0.00 3.06
4986 5174 0.478072 TTTCCTGAGCACCACCACAT 59.522 50.000 0.00 0.00 0.00 3.21
4987 5175 0.478072 ATTTCCTGAGCACCACCACA 59.522 50.000 0.00 0.00 0.00 4.17
4988 5176 2.359900 CTATTTCCTGAGCACCACCAC 58.640 52.381 0.00 0.00 0.00 4.16
4989 5177 1.281867 CCTATTTCCTGAGCACCACCA 59.718 52.381 0.00 0.00 0.00 4.17
4990 5178 1.282157 ACCTATTTCCTGAGCACCACC 59.718 52.381 0.00 0.00 0.00 4.61
4992 5180 3.806949 AAACCTATTTCCTGAGCACCA 57.193 42.857 0.00 0.00 0.00 4.17
4993 5181 3.367395 GCAAAACCTATTTCCTGAGCACC 60.367 47.826 0.00 0.00 0.00 5.01
4996 5184 4.488879 CAAGCAAAACCTATTTCCTGAGC 58.511 43.478 0.00 0.00 0.00 4.26
4997 5185 4.619160 GCCAAGCAAAACCTATTTCCTGAG 60.619 45.833 0.00 0.00 0.00 3.35
4998 5186 3.258123 GCCAAGCAAAACCTATTTCCTGA 59.742 43.478 0.00 0.00 0.00 3.86
4999 5187 3.588955 GCCAAGCAAAACCTATTTCCTG 58.411 45.455 0.00 0.00 0.00 3.86
5000 5188 2.567169 GGCCAAGCAAAACCTATTTCCT 59.433 45.455 0.00 0.00 0.00 3.36
5001 5189 2.354704 GGGCCAAGCAAAACCTATTTCC 60.355 50.000 4.39 0.00 0.00 3.13
5002 5190 2.301583 TGGGCCAAGCAAAACCTATTTC 59.698 45.455 2.13 0.00 0.00 2.17
5003 5191 2.334023 TGGGCCAAGCAAAACCTATTT 58.666 42.857 2.13 0.00 0.00 1.40
5004 5192 2.022718 TGGGCCAAGCAAAACCTATT 57.977 45.000 2.13 0.00 0.00 1.73
5005 5193 2.252535 ATGGGCCAAGCAAAACCTAT 57.747 45.000 11.89 0.00 0.00 2.57
5008 5196 1.608109 CAAAATGGGCCAAGCAAAACC 59.392 47.619 11.89 0.00 0.00 3.27
5009 5197 1.608109 CCAAAATGGGCCAAGCAAAAC 59.392 47.619 11.89 0.00 32.67 2.43
5012 5200 0.842635 AACCAAAATGGGCCAAGCAA 59.157 45.000 11.89 0.00 43.37 3.91
5015 5203 2.636647 AACAACCAAAATGGGCCAAG 57.363 45.000 11.89 0.33 43.37 3.61
5016 5204 2.422093 GGAAACAACCAAAATGGGCCAA 60.422 45.455 11.89 0.00 43.37 4.52
5020 5208 1.414550 ACCGGAAACAACCAAAATGGG 59.585 47.619 9.46 0.00 43.37 4.00
5024 5293 2.353803 CCAACACCGGAAACAACCAAAA 60.354 45.455 9.46 0.00 0.00 2.44
5026 5295 0.818296 CCAACACCGGAAACAACCAA 59.182 50.000 9.46 0.00 0.00 3.67
5029 5298 0.812549 ACACCAACACCGGAAACAAC 59.187 50.000 9.46 0.00 0.00 3.32
5036 5305 1.438651 CTACATCACACCAACACCGG 58.561 55.000 0.00 0.00 0.00 5.28
5038 5307 1.535462 GTGCTACATCACACCAACACC 59.465 52.381 0.00 0.00 36.97 4.16
5042 5311 3.483808 TTCTGTGCTACATCACACCAA 57.516 42.857 0.00 0.00 41.57 3.67
5045 5314 3.426695 GCCATTTCTGTGCTACATCACAC 60.427 47.826 0.00 0.00 41.57 3.82
5046 5315 2.749076 GCCATTTCTGTGCTACATCACA 59.251 45.455 0.00 0.00 43.93 3.58
5051 5320 3.156293 ACATTGCCATTTCTGTGCTACA 58.844 40.909 0.00 0.00 0.00 2.74
5076 5357 3.063510 TCCTGAGCAGAGAAATGTTGG 57.936 47.619 0.00 0.00 0.00 3.77
5077 5358 5.640189 ATTTCCTGAGCAGAGAAATGTTG 57.360 39.130 17.96 0.00 37.16 3.33
5078 5359 5.884792 CCTATTTCCTGAGCAGAGAAATGTT 59.115 40.000 22.80 10.91 38.06 2.71
5079 5360 5.045286 ACCTATTTCCTGAGCAGAGAAATGT 60.045 40.000 22.80 15.97 38.06 2.71
5080 5361 5.435291 ACCTATTTCCTGAGCAGAGAAATG 58.565 41.667 22.80 15.59 38.06 2.32
5081 5362 5.707066 ACCTATTTCCTGAGCAGAGAAAT 57.293 39.130 20.36 20.36 39.42 2.17
5082 5363 5.505181 AACCTATTTCCTGAGCAGAGAAA 57.495 39.130 12.95 12.95 34.53 2.52
5083 5364 5.505181 AAACCTATTTCCTGAGCAGAGAA 57.495 39.130 0.00 0.00 0.00 2.87
5084 5365 5.248640 CAAAACCTATTTCCTGAGCAGAGA 58.751 41.667 0.00 0.00 0.00 3.10
5085 5366 4.142513 GCAAAACCTATTTCCTGAGCAGAG 60.143 45.833 0.00 0.00 0.00 3.35
5086 5367 3.758554 GCAAAACCTATTTCCTGAGCAGA 59.241 43.478 0.00 0.00 0.00 4.26
5087 5368 3.760684 AGCAAAACCTATTTCCTGAGCAG 59.239 43.478 0.00 0.00 0.00 4.24
5088 5369 3.766545 AGCAAAACCTATTTCCTGAGCA 58.233 40.909 0.00 0.00 0.00 4.26
5093 5413 2.567169 GGCCAAGCAAAACCTATTTCCT 59.433 45.455 0.00 0.00 0.00 3.36
5103 5423 1.492176 TCCAAAATGGGCCAAGCAAAA 59.508 42.857 11.89 0.00 38.32 2.44
5104 5424 1.072015 CTCCAAAATGGGCCAAGCAAA 59.928 47.619 11.89 0.00 38.32 3.68
5113 5433 2.091541 ACGTGTATGCTCCAAAATGGG 58.908 47.619 0.00 0.00 38.32 4.00
5156 5485 9.551734 GCCATTTCTATGCTACATATATCATCA 57.448 33.333 0.00 0.00 0.00 3.07
5157 5486 9.551734 TGCCATTTCTATGCTACATATATCATC 57.448 33.333 0.00 0.00 0.00 2.92
5246 5593 3.610669 AGCTCTATCTGCCGGCCG 61.611 66.667 26.77 21.04 0.00 6.13
5251 5598 1.202627 CCTGAACCAGCTCTATCTGCC 60.203 57.143 0.00 0.00 32.87 4.85
5297 5644 2.524394 ACCAGTCAGGCGTCAGGT 60.524 61.111 0.00 0.00 43.14 4.00
5346 5693 6.430308 TCTTCGTCTGGATATACCACTATGTC 59.570 42.308 0.00 0.00 44.64 3.06
5347 5694 6.304624 TCTTCGTCTGGATATACCACTATGT 58.695 40.000 0.00 0.00 44.64 2.29
5393 5745 6.380274 AGAGATAGAGAAAACCACCGACATAA 59.620 38.462 0.00 0.00 0.00 1.90
5395 5747 4.712337 AGAGATAGAGAAAACCACCGACAT 59.288 41.667 0.00 0.00 0.00 3.06
5396 5748 4.087182 AGAGATAGAGAAAACCACCGACA 58.913 43.478 0.00 0.00 0.00 4.35
5397 5749 4.722361 AGAGATAGAGAAAACCACCGAC 57.278 45.455 0.00 0.00 0.00 4.79
5398 5750 7.288560 AGTATAGAGATAGAGAAAACCACCGA 58.711 38.462 0.00 0.00 0.00 4.69
5448 5828 5.354792 ACGTTCTTTTTAACCACAGCAAGTA 59.645 36.000 0.00 0.00 0.00 2.24
5449 5829 4.157105 ACGTTCTTTTTAACCACAGCAAGT 59.843 37.500 0.00 0.00 0.00 3.16
5450 5830 4.668289 ACGTTCTTTTTAACCACAGCAAG 58.332 39.130 0.00 0.00 0.00 4.01
5451 5831 4.705337 ACGTTCTTTTTAACCACAGCAA 57.295 36.364 0.00 0.00 0.00 3.91
5453 5833 5.209977 CCTTACGTTCTTTTTAACCACAGC 58.790 41.667 0.00 0.00 0.00 4.40
5527 5907 2.286772 CGAGAAAAACCGGTGAAAGGTG 60.287 50.000 8.52 0.00 41.95 4.00
5589 5969 9.439500 CAAACATTGATCTGATTTATTGGGTTT 57.561 29.630 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.