Multiple sequence alignment - TraesCS6B01G431800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G431800 chr6B 100.000 5628 0 0 1 5628 701151376 701145749 0.000000e+00 10394.0
1 TraesCS6B01G431800 chr6B 92.056 428 28 3 1160 1581 701061088 701060661 1.040000e-166 597.0
2 TraesCS6B01G431800 chr6A 94.184 5055 243 19 157 5181 606442789 606437756 0.000000e+00 7659.0
3 TraesCS6B01G431800 chr6A 86.973 522 58 8 4667 5181 606368837 606368319 3.780000e-161 579.0
4 TraesCS6B01G431800 chr6D 93.768 5071 246 26 157 5181 460372909 460367863 0.000000e+00 7550.0
5 TraesCS6B01G431800 chr6D 93.086 2401 137 9 1503 3879 460357896 460355501 0.000000e+00 3487.0
6 TraesCS6B01G431800 chr6D 90.442 837 63 7 613 1446 460282689 460283511 0.000000e+00 1086.0
7 TraesCS6B01G431800 chr6D 92.687 588 41 2 996 1581 460318302 460317715 0.000000e+00 846.0
8 TraesCS6B01G431800 chr6D 88.166 169 18 2 1430 1596 460283535 460283703 3.440000e-47 200.0
9 TraesCS6B01G431800 chr6D 88.608 79 6 3 5361 5439 460367587 460367512 6.000000e-15 93.5
10 TraesCS6B01G431800 chr6D 92.727 55 4 0 110 164 460372988 460372934 4.670000e-11 80.5
11 TraesCS6B01G431800 chrUn 74.631 2913 601 101 1880 4732 34270877 34268043 0.000000e+00 1158.0
12 TraesCS6B01G431800 chrUn 73.976 2882 593 103 1881 4689 34001854 34004651 0.000000e+00 1022.0
13 TraesCS6B01G431800 chrUn 76.394 2008 400 41 1824 3785 34147638 34145659 0.000000e+00 1014.0
14 TraesCS6B01G431800 chrUn 76.394 2008 400 41 1824 3785 282031944 282029965 0.000000e+00 1014.0
15 TraesCS6B01G431800 chrUn 73.099 2591 565 82 1881 4411 34458467 34455949 0.000000e+00 802.0
16 TraesCS6B01G431800 chrUn 75.411 1643 334 47 2113 3714 324828737 324827124 0.000000e+00 732.0
17 TraesCS6B01G431800 chrUn 74.438 1334 288 34 1881 3177 296985971 296984654 4.990000e-145 525.0
18 TraesCS6B01G431800 chrUn 76.062 1036 217 25 2683 3710 246979024 246980036 1.400000e-140 510.0
19 TraesCS6B01G431800 chrUn 74.796 857 172 29 1820 2648 34217737 34216897 4.170000e-91 346.0
20 TraesCS6B01G431800 chrUn 79.394 495 83 18 1811 2296 34313504 34313020 1.170000e-86 331.0
21 TraesCS6B01G431800 chrUn 94.611 167 8 1 5451 5617 101510846 101510681 2.010000e-64 257.0
22 TraesCS6B01G431800 chrUn 96.610 118 3 1 1 118 41335207 41335323 1.600000e-45 195.0
23 TraesCS6B01G431800 chrUn 96.610 118 3 1 1 118 41338583 41338699 1.600000e-45 195.0
24 TraesCS6B01G431800 chrUn 90.566 53 5 0 4835 4887 314578061 314578113 2.810000e-08 71.3
25 TraesCS6B01G431800 chr3A 75.614 1874 385 48 1881 3715 8036468 8038308 0.000000e+00 863.0
26 TraesCS6B01G431800 chr3A 77.474 879 154 32 1811 2660 8167075 8166212 2.360000e-133 486.0
27 TraesCS6B01G431800 chr3A 78.477 302 60 4 4432 4732 8081193 8081490 5.750000e-45 193.0
28 TraesCS6B01G431800 chr3D 80.139 433 73 13 1811 2237 1119147 1119572 1.520000e-80 311.0
29 TraesCS6B01G431800 chr3D 94.611 167 8 1 5451 5617 407717081 407716916 2.010000e-64 257.0
30 TraesCS6B01G431800 chr5D 95.210 167 7 1 5451 5617 71655427 71655592 4.320000e-66 263.0
31 TraesCS6B01G431800 chr4D 95.210 167 7 1 5451 5617 350071413 350071248 4.320000e-66 263.0
32 TraesCS6B01G431800 chr4D 94.611 167 8 1 5451 5617 454971591 454971756 2.010000e-64 257.0
33 TraesCS6B01G431800 chr2D 95.210 167 7 1 5451 5617 582292867 582292702 4.320000e-66 263.0
34 TraesCS6B01G431800 chr1D 95.210 167 7 1 5451 5617 316723895 316724060 4.320000e-66 263.0
35 TraesCS6B01G431800 chr7D 94.643 168 8 1 5450 5617 30620536 30620370 5.590000e-65 259.0
36 TraesCS6B01G431800 chr2B 92.308 182 11 3 5446 5625 540428432 540428252 7.240000e-64 255.0
37 TraesCS6B01G431800 chr2B 98.261 115 1 1 1 115 32633281 32633168 3.440000e-47 200.0
38 TraesCS6B01G431800 chr2B 98.246 114 1 1 1 114 737084399 737084511 1.240000e-46 198.0
39 TraesCS6B01G431800 chr4B 99.091 110 1 0 1 110 657392951 657392842 1.240000e-46 198.0
40 TraesCS6B01G431800 chr3B 98.246 114 1 1 1 114 45214688 45214800 1.240000e-46 198.0
41 TraesCS6B01G431800 chr3B 96.552 116 3 1 1 116 742243394 742243508 2.070000e-44 191.0
42 TraesCS6B01G431800 chr4A 99.083 109 1 0 1 109 736006468 736006576 4.450000e-46 196.0
43 TraesCS6B01G431800 chr7B 97.391 115 2 1 1 115 642521831 642521718 1.600000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G431800 chr6B 701145749 701151376 5627 True 10394.000000 10394 100.000 1 5628 1 chr6B.!!$R2 5627
1 TraesCS6B01G431800 chr6A 606437756 606442789 5033 True 7659.000000 7659 94.184 157 5181 1 chr6A.!!$R2 5024
2 TraesCS6B01G431800 chr6A 606368319 606368837 518 True 579.000000 579 86.973 4667 5181 1 chr6A.!!$R1 514
3 TraesCS6B01G431800 chr6D 460355501 460357896 2395 True 3487.000000 3487 93.086 1503 3879 1 chr6D.!!$R2 2376
4 TraesCS6B01G431800 chr6D 460367512 460372988 5476 True 2574.666667 7550 91.701 110 5439 3 chr6D.!!$R3 5329
5 TraesCS6B01G431800 chr6D 460317715 460318302 587 True 846.000000 846 92.687 996 1581 1 chr6D.!!$R1 585
6 TraesCS6B01G431800 chr6D 460282689 460283703 1014 False 643.000000 1086 89.304 613 1596 2 chr6D.!!$F1 983
7 TraesCS6B01G431800 chrUn 34268043 34270877 2834 True 1158.000000 1158 74.631 1880 4732 1 chrUn.!!$R3 2852
8 TraesCS6B01G431800 chrUn 34001854 34004651 2797 False 1022.000000 1022 73.976 1881 4689 1 chrUn.!!$F1 2808
9 TraesCS6B01G431800 chrUn 34145659 34147638 1979 True 1014.000000 1014 76.394 1824 3785 1 chrUn.!!$R1 1961
10 TraesCS6B01G431800 chrUn 282029965 282031944 1979 True 1014.000000 1014 76.394 1824 3785 1 chrUn.!!$R7 1961
11 TraesCS6B01G431800 chrUn 34455949 34458467 2518 True 802.000000 802 73.099 1881 4411 1 chrUn.!!$R5 2530
12 TraesCS6B01G431800 chrUn 324827124 324828737 1613 True 732.000000 732 75.411 2113 3714 1 chrUn.!!$R9 1601
13 TraesCS6B01G431800 chrUn 296984654 296985971 1317 True 525.000000 525 74.438 1881 3177 1 chrUn.!!$R8 1296
14 TraesCS6B01G431800 chrUn 246979024 246980036 1012 False 510.000000 510 76.062 2683 3710 1 chrUn.!!$F2 1027
15 TraesCS6B01G431800 chrUn 34216897 34217737 840 True 346.000000 346 74.796 1820 2648 1 chrUn.!!$R2 828
16 TraesCS6B01G431800 chr3A 8036468 8038308 1840 False 863.000000 863 75.614 1881 3715 1 chr3A.!!$F1 1834
17 TraesCS6B01G431800 chr3A 8166212 8167075 863 True 486.000000 486 77.474 1811 2660 1 chr3A.!!$R1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.000 0.00 0.0 33.65 2.67 F
75 76 0.107361 CCGGGACTAATGGGTTGACC 60.107 60.000 0.00 0.0 40.81 4.02 F
101 102 0.252239 GGACCAATGCCCCCTTTTCT 60.252 55.000 0.00 0.0 0.00 2.52 F
102 103 1.006639 GGACCAATGCCCCCTTTTCTA 59.993 52.381 0.00 0.0 0.00 2.10 F
626 660 1.255882 TTTCTAGGGTCCAACGCGTA 58.744 50.000 14.46 0.0 36.04 4.42 F
2388 2505 0.687354 ATCCACCCTGCGATCATACC 59.313 55.000 0.00 0.0 0.00 2.73 F
2840 2997 0.331278 TGAAAGACCGGATTGCCCAT 59.669 50.000 9.46 0.0 34.14 4.00 F
3336 3493 1.473434 CCTATCAAAGGCGAGTGGACC 60.473 57.143 0.00 0.0 38.97 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1658 3.327757 TCACTACTTCCAGTTCCAAGCAT 59.672 43.478 0.00 0.0 0.00 3.79 R
2056 2146 0.868406 CCGAGTGGTCAAGTTTCAGC 59.132 55.000 0.00 0.0 0.00 4.26 R
2074 2164 5.858381 TGCTTGTCTAGAATGGATATCACC 58.142 41.667 4.83 0.0 0.00 4.02 R
2144 2234 7.200434 TCATTAGCCCAACTCTTTCTATTCT 57.800 36.000 0.00 0.0 0.00 2.40 R
2539 2680 0.609957 TGGAAGCATGAGCAACCCAG 60.610 55.000 0.00 0.0 45.49 4.45 R
3567 3724 0.179015 TAGCCCACGCAGGAACAAAA 60.179 50.000 0.00 0.0 41.22 2.44 R
4132 4298 0.248825 CACTCCCTTCAGCGATCTCG 60.249 60.000 0.00 0.0 43.27 4.04 R
5356 5600 0.042431 AGAGGGCCAGACTCACTCAT 59.958 55.000 6.18 0.0 37.43 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.754667 GGGCTCACGAACCGGGTC 62.755 72.222 10.31 10.31 0.00 4.46
23 24 4.754667 GGCTCACGAACCGGGTCC 62.755 72.222 15.47 0.00 0.00 4.46
24 25 3.998672 GCTCACGAACCGGGTCCA 61.999 66.667 15.47 0.00 0.00 4.02
25 26 2.738480 CTCACGAACCGGGTCCAA 59.262 61.111 15.47 0.00 0.00 3.53
26 27 1.295423 CTCACGAACCGGGTCCAAT 59.705 57.895 15.47 0.00 0.00 3.16
27 28 1.004320 TCACGAACCGGGTCCAATG 60.004 57.895 15.47 10.37 0.00 2.82
28 29 2.359478 ACGAACCGGGTCCAATGC 60.359 61.111 15.47 0.00 0.00 3.56
29 30 3.131478 CGAACCGGGTCCAATGCC 61.131 66.667 15.47 0.00 0.00 4.40
30 31 2.034999 GAACCGGGTCCAATGCCA 59.965 61.111 8.85 0.00 0.00 4.92
31 32 2.282887 AACCGGGTCCAATGCCAC 60.283 61.111 6.32 0.00 0.00 5.01
32 33 3.879180 AACCGGGTCCAATGCCACC 62.879 63.158 6.32 0.00 0.00 4.61
33 34 4.358841 CCGGGTCCAATGCCACCA 62.359 66.667 0.00 0.00 33.91 4.17
34 35 2.044053 CGGGTCCAATGCCACCAT 60.044 61.111 2.60 0.00 33.91 3.55
35 36 1.682005 CGGGTCCAATGCCACCATT 60.682 57.895 2.60 0.00 42.26 3.16
41 42 4.459199 AATGCCACCATTGGTCCC 57.541 55.556 5.04 0.18 45.98 4.46
42 43 1.682005 AATGCCACCATTGGTCCCG 60.682 57.895 5.04 0.00 45.98 5.14
43 44 3.660422 ATGCCACCATTGGTCCCGG 62.660 63.158 5.04 5.83 45.98 5.73
44 45 4.360405 GCCACCATTGGTCCCGGT 62.360 66.667 5.04 0.00 45.98 5.28
45 46 2.438795 CCACCATTGGTCCCGGTT 59.561 61.111 5.04 0.00 38.23 4.44
46 47 1.677633 CCACCATTGGTCCCGGTTC 60.678 63.158 5.04 0.00 38.23 3.62
47 48 1.378762 CACCATTGGTCCCGGTTCT 59.621 57.895 5.04 0.00 31.02 3.01
48 49 0.960364 CACCATTGGTCCCGGTTCTG 60.960 60.000 5.04 0.00 31.02 3.02
49 50 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
50 51 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
51 52 0.255890 CATTGGTCCCGGTTCTGGAT 59.744 55.000 0.00 0.00 33.65 3.41
52 53 0.999712 ATTGGTCCCGGTTCTGGATT 59.000 50.000 0.00 0.00 33.65 3.01
53 54 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.000 0.00 0.00 33.65 2.67
54 55 0.838554 TGGTCCCGGTTCTGGATTGA 60.839 55.000 0.00 0.00 33.65 2.57
55 56 0.326927 GGTCCCGGTTCTGGATTGAA 59.673 55.000 0.00 0.00 33.65 2.69
56 57 1.450025 GTCCCGGTTCTGGATTGAAC 58.550 55.000 0.00 0.00 43.88 3.18
61 62 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
62 63 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
63 64 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
64 65 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
65 66 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
66 67 3.112263 TCTGGATTGAACCGGGACTAAT 58.888 45.455 6.32 0.27 36.97 1.73
67 68 3.118408 TCTGGATTGAACCGGGACTAATG 60.118 47.826 6.32 0.00 36.97 1.90
68 69 2.092646 TGGATTGAACCGGGACTAATGG 60.093 50.000 6.32 0.00 0.00 3.16
69 70 2.572290 GATTGAACCGGGACTAATGGG 58.428 52.381 6.32 0.00 0.00 4.00
70 71 1.364269 TTGAACCGGGACTAATGGGT 58.636 50.000 6.32 0.00 0.00 4.51
71 72 1.364269 TGAACCGGGACTAATGGGTT 58.636 50.000 6.32 0.00 45.02 4.11
72 73 1.003812 TGAACCGGGACTAATGGGTTG 59.996 52.381 6.32 0.00 42.54 3.77
73 74 1.279846 GAACCGGGACTAATGGGTTGA 59.720 52.381 6.32 0.00 42.54 3.18
74 75 0.616891 ACCGGGACTAATGGGTTGAC 59.383 55.000 6.32 0.00 0.00 3.18
75 76 0.107361 CCGGGACTAATGGGTTGACC 60.107 60.000 0.00 0.00 40.81 4.02
85 86 4.717313 GGTTGACCCGGCCTGGAC 62.717 72.222 21.63 14.78 42.00 4.02
86 87 4.717313 GTTGACCCGGCCTGGACC 62.717 72.222 21.63 11.43 42.00 4.46
89 90 3.728373 GACCCGGCCTGGACCAAT 61.728 66.667 21.63 0.00 42.00 3.16
90 91 3.995506 GACCCGGCCTGGACCAATG 62.996 68.421 21.63 2.26 42.00 2.82
96 97 3.350163 CCTGGACCAATGCCCCCT 61.350 66.667 0.00 0.00 0.00 4.79
97 98 2.772924 CTGGACCAATGCCCCCTT 59.227 61.111 0.00 0.00 0.00 3.95
98 99 1.079073 CTGGACCAATGCCCCCTTT 59.921 57.895 0.00 0.00 0.00 3.11
99 100 0.545071 CTGGACCAATGCCCCCTTTT 60.545 55.000 0.00 0.00 0.00 2.27
100 101 0.544120 TGGACCAATGCCCCCTTTTC 60.544 55.000 0.00 0.00 0.00 2.29
101 102 0.252239 GGACCAATGCCCCCTTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
102 103 1.006639 GGACCAATGCCCCCTTTTCTA 59.993 52.381 0.00 0.00 0.00 2.10
103 104 2.100197 GACCAATGCCCCCTTTTCTAC 58.900 52.381 0.00 0.00 0.00 2.59
104 105 1.716503 ACCAATGCCCCCTTTTCTACT 59.283 47.619 0.00 0.00 0.00 2.57
105 106 2.923629 ACCAATGCCCCCTTTTCTACTA 59.076 45.455 0.00 0.00 0.00 1.82
106 107 3.053619 ACCAATGCCCCCTTTTCTACTAG 60.054 47.826 0.00 0.00 0.00 2.57
107 108 3.053619 CCAATGCCCCCTTTTCTACTAGT 60.054 47.826 0.00 0.00 0.00 2.57
108 109 3.933861 ATGCCCCCTTTTCTACTAGTG 57.066 47.619 5.39 0.00 0.00 2.74
153 154 9.392506 TGATCTTATTCCTTATGTATTGAGGGA 57.607 33.333 0.00 0.00 0.00 4.20
235 267 7.309438 GCTTTGGATCTTTTAACCACAGAGATT 60.309 37.037 0.00 0.00 34.58 2.40
249 281 3.367932 ACAGAGATTGTGCATTAACGACG 59.632 43.478 0.00 0.00 38.99 5.12
294 326 4.696455 CTGAAATGTTTTCTTGCTGGGTT 58.304 39.130 2.08 0.00 0.00 4.11
390 422 2.223688 TGCGGTTCACACATGGAAAAAG 60.224 45.455 0.00 0.00 0.00 2.27
408 440 1.433121 AGGATTTTTGCAAGGGCCAA 58.567 45.000 6.18 0.00 40.13 4.52
491 525 6.410942 AAGGAAAAAGAATAAAGCAGCACT 57.589 33.333 0.00 0.00 0.00 4.40
523 557 2.470057 TTGGCAAAGAGGAAAAGGGT 57.530 45.000 0.00 0.00 0.00 4.34
626 660 1.255882 TTTCTAGGGTCCAACGCGTA 58.744 50.000 14.46 0.00 36.04 4.42
637 671 2.029649 TCCAACGCGTACTTCTAGCTTT 60.030 45.455 14.46 0.00 0.00 3.51
687 721 5.779241 TTCCATTTCCACTCTAATCTGGT 57.221 39.130 0.00 0.00 0.00 4.00
718 760 5.089970 AGCAGTGTAGCATAAGTTGATCA 57.910 39.130 0.00 0.00 36.85 2.92
728 770 8.983724 GTAGCATAAGTTGATCAGACTATTTCC 58.016 37.037 9.88 1.78 0.00 3.13
772 814 1.736612 CTTCAAGCTGCTCTTCTCCC 58.263 55.000 1.00 0.00 31.27 4.30
825 867 7.068716 ACATTTTCTAGCTTCCTTTCTTTGTGT 59.931 33.333 0.00 0.00 0.00 3.72
841 883 6.591935 TCTTTGTGTCCTTCAAGTATTCTGT 58.408 36.000 0.00 0.00 0.00 3.41
868 910 7.824289 TGCATAAGTAGCACTAATTCTTTGAGT 59.176 33.333 0.00 0.00 37.02 3.41
883 925 3.502191 TTGAGTGGTCAAGCACAAAAC 57.498 42.857 14.15 4.19 37.79 2.43
889 931 2.223386 TGGTCAAGCACAAAACTAACGC 60.223 45.455 0.00 0.00 0.00 4.84
943 985 3.760684 GGCAAGAAATCTTCAGTGATGGT 59.239 43.478 6.21 0.00 33.11 3.55
1251 1298 3.092301 AGTCATATATGCCAGAGCGCTA 58.908 45.455 11.50 0.00 44.31 4.26
1706 1795 6.669631 TGTGATATGGAGGTAGTACTCAGAA 58.330 40.000 0.00 0.00 39.27 3.02
2040 2130 5.460091 GGAAAAGTGAAAGAACAATGCAGAC 59.540 40.000 0.00 0.00 0.00 3.51
2056 2146 3.943381 TGCAGACATTAATTGCAGAGGAG 59.057 43.478 8.83 0.00 42.41 3.69
2074 2164 1.795286 GAGCTGAAACTTGACCACTCG 59.205 52.381 0.00 0.00 0.00 4.18
2144 2234 6.180472 GGAGTTGATGAAAGTTCAAGGGATA 58.820 40.000 0.00 0.00 41.13 2.59
2145 2235 6.317391 GGAGTTGATGAAAGTTCAAGGGATAG 59.683 42.308 0.00 0.00 41.13 2.08
2155 2245 9.892130 GAAAGTTCAAGGGATAGAATAGAAAGA 57.108 33.333 0.00 0.00 0.00 2.52
2163 2253 5.072464 GGGATAGAATAGAAAGAGTTGGGCT 59.928 44.000 0.00 0.00 0.00 5.19
2242 2332 3.820467 GTGATGTTGAGTTTGACATGGGA 59.180 43.478 0.00 0.00 36.67 4.37
2270 2366 3.103742 GGTCCCCCATTTGCAAGATTTA 58.896 45.455 0.00 0.00 0.00 1.40
2272 2368 3.769300 GTCCCCCATTTGCAAGATTTAGT 59.231 43.478 0.00 0.00 0.00 2.24
2301 2403 5.662208 ACATGATGATATGGGCCTTCAAAAA 59.338 36.000 4.53 0.00 32.32 1.94
2324 2426 4.162040 AGATTCCTGACCATGAATCACC 57.838 45.455 21.49 4.80 45.94 4.02
2367 2469 6.878317 ACAAGCTAAGATACACTCATGCTTA 58.122 36.000 0.00 0.00 36.95 3.09
2385 2499 3.369892 GCTTATATCCACCCTGCGATCAT 60.370 47.826 0.00 0.00 0.00 2.45
2388 2505 0.687354 ATCCACCCTGCGATCATACC 59.313 55.000 0.00 0.00 0.00 2.73
2403 2520 6.100004 CGATCATACCACTAACAAGTTCAGT 58.900 40.000 0.00 0.00 0.00 3.41
2462 2579 4.433615 AGTTGCTCGTAGTCCATGTATTG 58.566 43.478 0.00 0.00 0.00 1.90
2500 2617 3.928727 ATGGTTGCAGATTGTTGTCTG 57.071 42.857 0.00 0.00 46.59 3.51
2539 2680 5.519722 CATTGTAACTTCCACACCTTTCAC 58.480 41.667 0.00 0.00 0.00 3.18
2566 2707 1.610522 GCTCATGCTTCCAACTGTTGT 59.389 47.619 18.38 0.00 36.03 3.32
2581 2723 2.945008 CTGTTGTATGTGCGATGGGATT 59.055 45.455 0.00 0.00 0.00 3.01
2604 2746 2.911926 AAGGGGACAGAGCAAGGGC 61.912 63.158 0.00 0.00 41.61 5.19
2661 2803 2.012673 GTGTGATGCTCCTTTGGCTAG 58.987 52.381 0.00 0.00 0.00 3.42
2662 2804 1.908619 TGTGATGCTCCTTTGGCTAGA 59.091 47.619 0.00 0.00 0.00 2.43
2676 2833 5.418310 TTGGCTAGAAAGTTCTTGAAACG 57.582 39.130 6.68 0.00 38.70 3.60
2681 2838 6.367969 GGCTAGAAAGTTCTTGAAACGTATGA 59.632 38.462 6.68 0.00 38.70 2.15
2710 2867 5.882557 TCCTTTTCTGATACTTGAAGATGGC 59.117 40.000 0.00 0.00 0.00 4.40
2711 2868 5.067023 CCTTTTCTGATACTTGAAGATGGCC 59.933 44.000 0.00 0.00 0.00 5.36
2723 2880 4.454678 TGAAGATGGCCATGTCTATGAAC 58.545 43.478 26.56 4.89 36.36 3.18
2735 2892 3.780294 TGTCTATGAACAAGGGCCATACT 59.220 43.478 6.18 0.00 0.00 2.12
2743 2900 1.421268 CAAGGGCCATACTGCTGGATA 59.579 52.381 6.18 0.00 38.69 2.59
2757 2914 3.575687 TGCTGGATATCAGTCACATCGAT 59.424 43.478 4.83 0.00 45.08 3.59
2840 2997 0.331278 TGAAAGACCGGATTGCCCAT 59.669 50.000 9.46 0.00 34.14 4.00
2853 3010 2.116827 TGCCCATTACCGTTACCAAG 57.883 50.000 0.00 0.00 0.00 3.61
2901 3058 4.881850 CCTTGGTGTGTTAGTTCTCTGTTT 59.118 41.667 0.00 0.00 0.00 2.83
2920 3077 1.919918 TTTGTGCCTTCAGTTTTGCG 58.080 45.000 0.00 0.00 0.00 4.85
2935 3092 2.436824 GCGGCACCTCCTTTCCTC 60.437 66.667 0.00 0.00 0.00 3.71
2942 3099 2.586425 CACCTCCTTTCCTCAAAAGCA 58.414 47.619 0.00 0.00 42.63 3.91
2944 3101 1.543358 CCTCCTTTCCTCAAAAGCAGC 59.457 52.381 0.00 0.00 42.63 5.25
2968 3125 3.137360 GCCTAAGATTCCTTGGACTGGAT 59.863 47.826 0.00 0.00 33.25 3.41
2987 3144 7.982252 ACTGGATCATTGTATAGATGACCAAT 58.018 34.615 14.34 7.80 36.43 3.16
2988 3145 8.443176 ACTGGATCATTGTATAGATGACCAATT 58.557 33.333 14.34 7.66 36.43 2.32
3034 3191 2.618709 GTGGGCATGTTTGTATAGCCTC 59.381 50.000 0.00 0.00 44.60 4.70
3101 3258 6.354938 TCTGAAGAAAAGATGGATCTCATGG 58.645 40.000 0.00 0.00 35.76 3.66
3210 3367 5.298276 GGCTCCGAATAATCAAACCAACATA 59.702 40.000 0.00 0.00 0.00 2.29
3214 3371 8.153479 TCCGAATAATCAAACCAACATATCAG 57.847 34.615 0.00 0.00 0.00 2.90
3305 3462 3.326880 AGGTAACACCGAGATGGAAGTTT 59.673 43.478 0.00 0.00 44.90 2.66
3336 3493 1.473434 CCTATCAAAGGCGAGTGGACC 60.473 57.143 0.00 0.00 38.97 4.46
3355 3512 2.288273 ACCTCGAGTGCTTGTACTTGAC 60.288 50.000 12.31 0.00 36.42 3.18
3386 3543 1.622811 GGGTGGAAAACATTGATGGCA 59.377 47.619 0.00 0.00 0.00 4.92
3567 3724 4.649218 AGCAGGGTGTAAACAGTTGAAAAT 59.351 37.500 0.00 0.00 0.00 1.82
3779 3936 3.926821 TGCTGTACATAGACACACGAA 57.073 42.857 0.00 0.00 0.00 3.85
3788 3945 1.617322 AGACACACGAACTGGAGCTA 58.383 50.000 0.00 0.00 0.00 3.32
4132 4298 1.737838 TGAAGTTGGATCGGCATGTC 58.262 50.000 0.00 0.00 0.00 3.06
4150 4316 0.394488 TCGAGATCGCTGAAGGGAGT 60.394 55.000 3.36 0.00 40.39 3.85
4151 4317 0.248825 CGAGATCGCTGAAGGGAGTG 60.249 60.000 3.36 0.00 40.39 3.51
4220 4386 4.929211 TGATGGATTTATACGCTGAATCGG 59.071 41.667 0.00 0.00 32.09 4.18
4239 4405 2.400798 GCACGTGCATGATGTCCG 59.599 61.111 34.52 0.18 41.59 4.79
4256 4422 2.112190 TCCGGGTATGTGCTATTGTGA 58.888 47.619 0.00 0.00 0.00 3.58
4338 4504 1.301401 CGGTCTTCCAAACGAGCCA 60.301 57.895 0.00 0.00 0.00 4.75
4612 4790 4.023137 GCCGTCCAGGGTGTACTA 57.977 61.111 0.00 0.00 41.48 1.82
4827 5008 0.986019 ACCACCCTGACAGTTGGACA 60.986 55.000 21.67 0.00 0.00 4.02
4880 5061 3.521126 TCCGTCCTCAGGTAGTAAGTACT 59.479 47.826 0.00 0.00 40.24 2.73
4891 5072 6.818644 CAGGTAGTAAGTACTCATGCACATTT 59.181 38.462 0.00 0.00 37.73 2.32
4905 5086 6.773685 TCATGCACATTTATGATTCCATCTCA 59.226 34.615 0.00 0.00 34.31 3.27
4936 5119 4.457466 TCTACACTACCACTGATCGCATA 58.543 43.478 0.00 0.00 0.00 3.14
4945 5128 6.015027 ACCACTGATCGCATATAGACTTAC 57.985 41.667 0.00 0.00 0.00 2.34
4969 5152 0.658897 TCAACCCTTTTCGTTGCGTC 59.341 50.000 0.00 0.00 40.35 5.19
5020 5207 1.142060 ACCGATGTGTTTCTTCCACCA 59.858 47.619 0.00 0.00 31.71 4.17
5061 5248 1.423541 TGGTTGTGCTCCTATGGTTGT 59.576 47.619 0.00 0.00 0.00 3.32
5063 5250 2.890945 GGTTGTGCTCCTATGGTTGTTT 59.109 45.455 0.00 0.00 0.00 2.83
5075 5265 0.595825 GGTTGTTTCTGCTGCTGCAC 60.596 55.000 14.93 5.58 45.31 4.57
5121 5311 0.339859 TGGATAGCCAGACACCTCCT 59.660 55.000 0.00 0.00 39.92 3.69
5154 5345 2.602878 GCTGTCAATGCAAACATGGAG 58.397 47.619 0.00 0.00 36.89 3.86
5165 5356 3.258123 GCAAACATGGAGGGAAAAGCTTA 59.742 43.478 0.00 0.00 0.00 3.09
5166 5357 4.619160 GCAAACATGGAGGGAAAAGCTTAG 60.619 45.833 0.00 0.00 0.00 2.18
5167 5358 2.728007 ACATGGAGGGAAAAGCTTAGC 58.272 47.619 0.00 0.00 0.00 3.09
5178 5369 0.329596 AAGCTTAGCCCTTCAGGTGG 59.670 55.000 0.00 0.00 38.26 4.61
5188 5424 1.684869 CCTTCAGGTGGGTTGTTGTGT 60.685 52.381 0.00 0.00 0.00 3.72
5189 5425 1.676006 CTTCAGGTGGGTTGTTGTGTC 59.324 52.381 0.00 0.00 0.00 3.67
5216 5452 1.968540 GCTTTTGGTGGCTCTCGCT 60.969 57.895 0.00 0.00 36.09 4.93
5217 5453 0.673644 GCTTTTGGTGGCTCTCGCTA 60.674 55.000 0.00 0.00 36.09 4.26
5218 5454 1.363744 CTTTTGGTGGCTCTCGCTAG 58.636 55.000 0.00 0.00 36.09 3.42
5248 5484 4.013050 GGCTCTGGAATAAAAAGCTGACT 58.987 43.478 0.00 0.00 33.50 3.41
5264 5500 2.481568 CTGACTGGTATGTGCTTGTGTG 59.518 50.000 0.00 0.00 0.00 3.82
5274 5510 2.639970 GCTTGTGTGTACATGCCCA 58.360 52.632 0.00 0.00 46.52 5.36
5291 5529 0.177836 CCAGACCATGCCGATGTGTA 59.822 55.000 0.00 0.00 0.00 2.90
5304 5542 0.524862 ATGTGTAGCTTTGCTGCTGC 59.475 50.000 8.89 8.89 43.87 5.25
5318 5561 1.141019 GCTGCATTGCATCCACCTG 59.859 57.895 12.53 0.00 38.13 4.00
5322 5565 1.683025 CATTGCATCCACCTGGCCA 60.683 57.895 4.71 4.71 34.44 5.36
5324 5567 2.444004 ATTGCATCCACCTGGCCACA 62.444 55.000 0.00 0.00 34.44 4.17
5328 5571 2.619446 ATCCACCTGGCCACATGCT 61.619 57.895 0.00 0.00 40.92 3.79
5329 5572 2.159101 ATCCACCTGGCCACATGCTT 62.159 55.000 0.00 0.00 40.92 3.91
5331 5574 1.904865 CACCTGGCCACATGCTTGT 60.905 57.895 0.00 0.00 40.92 3.16
5332 5575 0.608856 CACCTGGCCACATGCTTGTA 60.609 55.000 0.00 0.00 40.92 2.41
5333 5576 0.112218 ACCTGGCCACATGCTTGTAA 59.888 50.000 0.00 0.00 40.92 2.41
5335 5578 0.813184 CTGGCCACATGCTTGTAAGG 59.187 55.000 0.00 4.93 40.92 2.69
5336 5579 0.403655 TGGCCACATGCTTGTAAGGA 59.596 50.000 0.00 0.00 40.92 3.36
5338 5581 2.102578 GGCCACATGCTTGTAAGGATT 58.897 47.619 11.91 0.00 40.92 3.01
5353 5597 8.458573 TTGTAAGGATTGTTGTTTGATACACT 57.541 30.769 0.00 0.00 36.21 3.55
5355 5599 9.733556 TGTAAGGATTGTTGTTTGATACACTAT 57.266 29.630 0.00 0.00 36.21 2.12
5374 5661 1.781786 TATGAGTGAGTCTGGCCCTC 58.218 55.000 0.00 0.00 0.00 4.30
5375 5662 0.042431 ATGAGTGAGTCTGGCCCTCT 59.958 55.000 0.00 0.00 0.00 3.69
5376 5663 0.613292 TGAGTGAGTCTGGCCCTCTC 60.613 60.000 0.00 6.12 0.00 3.20
5413 5700 6.869913 AGTGTTTGCCATGAATGTATTTGAAG 59.130 34.615 0.00 0.00 0.00 3.02
5417 5704 6.587206 TGCCATGAATGTATTTGAAGTGAA 57.413 33.333 0.00 0.00 0.00 3.18
5420 5707 7.092716 GCCATGAATGTATTTGAAGTGAACTT 58.907 34.615 0.00 0.00 39.23 2.66
5428 5715 7.861630 TGTATTTGAAGTGAACTTAGAAGCAC 58.138 34.615 0.00 0.00 36.11 4.40
5430 5717 3.740115 TGAAGTGAACTTAGAAGCACCC 58.260 45.455 0.00 0.00 36.11 4.61
5443 5730 2.024022 CACCCGTGTGTGCGTTTG 59.976 61.111 0.00 0.00 37.72 2.93
5444 5731 3.883180 ACCCGTGTGTGCGTTTGC 61.883 61.111 0.00 0.00 43.20 3.68
5445 5732 3.582120 CCCGTGTGTGCGTTTGCT 61.582 61.111 0.00 0.00 43.34 3.91
5446 5733 2.248135 CCCGTGTGTGCGTTTGCTA 61.248 57.895 0.00 0.00 43.34 3.49
5447 5734 1.644372 CCGTGTGTGCGTTTGCTAA 59.356 52.632 0.00 0.00 43.34 3.09
5448 5735 0.028242 CCGTGTGTGCGTTTGCTAAA 59.972 50.000 0.00 0.00 43.34 1.85
5449 5736 1.334599 CCGTGTGTGCGTTTGCTAAAT 60.335 47.619 0.00 0.00 43.34 1.40
5450 5737 2.096169 CCGTGTGTGCGTTTGCTAAATA 60.096 45.455 0.00 0.00 43.34 1.40
5451 5738 3.425625 CCGTGTGTGCGTTTGCTAAATAT 60.426 43.478 0.00 0.00 43.34 1.28
5452 5739 4.155449 CGTGTGTGCGTTTGCTAAATATT 58.845 39.130 0.00 0.00 43.34 1.28
5453 5740 5.317559 CGTGTGTGCGTTTGCTAAATATTA 58.682 37.500 0.00 0.00 43.34 0.98
5454 5741 5.224313 CGTGTGTGCGTTTGCTAAATATTAC 59.776 40.000 0.00 0.00 43.34 1.89
5455 5742 6.311723 GTGTGTGCGTTTGCTAAATATTACT 58.688 36.000 0.00 0.00 43.34 2.24
5456 5743 6.464834 GTGTGTGCGTTTGCTAAATATTACTC 59.535 38.462 0.00 0.00 43.34 2.59
5457 5744 5.963586 GTGTGCGTTTGCTAAATATTACTCC 59.036 40.000 0.00 0.00 43.34 3.85
5458 5745 5.065474 TGTGCGTTTGCTAAATATTACTCCC 59.935 40.000 0.00 0.00 43.34 4.30
5459 5746 5.296035 GTGCGTTTGCTAAATATTACTCCCT 59.704 40.000 0.00 0.00 43.34 4.20
5460 5747 5.526111 TGCGTTTGCTAAATATTACTCCCTC 59.474 40.000 0.00 0.00 43.34 4.30
5461 5748 5.049612 GCGTTTGCTAAATATTACTCCCTCC 60.050 44.000 0.00 0.00 38.39 4.30
5462 5749 5.176958 CGTTTGCTAAATATTACTCCCTCCG 59.823 44.000 0.00 0.00 0.00 4.63
5463 5750 5.881923 TTGCTAAATATTACTCCCTCCGT 57.118 39.130 0.00 0.00 0.00 4.69
5464 5751 5.881923 TGCTAAATATTACTCCCTCCGTT 57.118 39.130 0.00 0.00 0.00 4.44
5465 5752 5.850614 TGCTAAATATTACTCCCTCCGTTC 58.149 41.667 0.00 0.00 0.00 3.95
5466 5753 5.221581 TGCTAAATATTACTCCCTCCGTTCC 60.222 44.000 0.00 0.00 0.00 3.62
5467 5754 4.701651 AAATATTACTCCCTCCGTTCCC 57.298 45.455 0.00 0.00 0.00 3.97
5468 5755 2.852714 TATTACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
5469 5756 1.961133 ATTACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
5470 5757 1.732117 TTACTCCCTCCGTTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
5471 5758 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
5472 5759 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5473 5760 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5474 5761 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
5475 5762 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
5476 5763 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
5477 5764 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
5478 5765 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
5479 5766 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
5480 5767 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
5481 5768 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
5482 5769 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
5483 5770 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
5484 5771 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
5485 5772 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
5486 5773 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
5487 5774 8.391106 CGTTCCCAAATATTTGTCTTTCTAGAG 58.609 37.037 23.24 7.00 36.45 2.43
5488 5775 9.449719 GTTCCCAAATATTTGTCTTTCTAGAGA 57.550 33.333 23.24 5.94 36.45 3.10
5511 5798 9.916397 GAGATTTTAACAAATGACTACATACGG 57.084 33.333 0.00 0.00 35.50 4.02
5512 5799 9.661563 AGATTTTAACAAATGACTACATACGGA 57.338 29.630 0.00 0.00 35.50 4.69
5515 5802 8.604640 TTTAACAAATGACTACATACGGAACA 57.395 30.769 0.00 0.00 35.50 3.18
5516 5803 8.604640 TTAACAAATGACTACATACGGAACAA 57.395 30.769 0.00 0.00 35.50 2.83
5517 5804 7.499321 AACAAATGACTACATACGGAACAAA 57.501 32.000 0.00 0.00 35.50 2.83
5518 5805 7.499321 ACAAATGACTACATACGGAACAAAA 57.501 32.000 0.00 0.00 35.50 2.44
5519 5806 8.106247 ACAAATGACTACATACGGAACAAAAT 57.894 30.769 0.00 0.00 35.50 1.82
5520 5807 9.221933 ACAAATGACTACATACGGAACAAAATA 57.778 29.630 0.00 0.00 35.50 1.40
5523 5810 9.444600 AATGACTACATACGGAACAAAATAAGT 57.555 29.630 0.00 0.00 35.50 2.24
5524 5811 8.246908 TGACTACATACGGAACAAAATAAGTG 57.753 34.615 0.00 0.00 0.00 3.16
5525 5812 8.089597 TGACTACATACGGAACAAAATAAGTGA 58.910 33.333 0.00 0.00 0.00 3.41
5526 5813 8.836268 ACTACATACGGAACAAAATAAGTGAA 57.164 30.769 0.00 0.00 0.00 3.18
5527 5814 9.444600 ACTACATACGGAACAAAATAAGTGAAT 57.555 29.630 0.00 0.00 0.00 2.57
5528 5815 9.916397 CTACATACGGAACAAAATAAGTGAATC 57.084 33.333 0.00 0.00 0.00 2.52
5529 5816 8.561738 ACATACGGAACAAAATAAGTGAATCT 57.438 30.769 0.00 0.00 0.00 2.40
5530 5817 9.661563 ACATACGGAACAAAATAAGTGAATCTA 57.338 29.630 0.00 0.00 0.00 1.98
5531 5818 9.916397 CATACGGAACAAAATAAGTGAATCTAC 57.084 33.333 0.00 0.00 0.00 2.59
5532 5819 7.972832 ACGGAACAAAATAAGTGAATCTACA 57.027 32.000 0.00 0.00 0.00 2.74
5533 5820 7.803724 ACGGAACAAAATAAGTGAATCTACAC 58.196 34.615 0.00 0.00 40.60 2.90
5571 5858 3.454375 CATACCTCCGTATGTTGTGTCC 58.546 50.000 2.71 0.00 44.65 4.02
5572 5859 1.344065 ACCTCCGTATGTTGTGTCCA 58.656 50.000 0.00 0.00 0.00 4.02
5573 5860 1.906574 ACCTCCGTATGTTGTGTCCAT 59.093 47.619 0.00 0.00 0.00 3.41
5574 5861 2.304761 ACCTCCGTATGTTGTGTCCATT 59.695 45.455 0.00 0.00 0.00 3.16
5575 5862 3.244770 ACCTCCGTATGTTGTGTCCATTT 60.245 43.478 0.00 0.00 0.00 2.32
5576 5863 3.126858 CCTCCGTATGTTGTGTCCATTTG 59.873 47.826 0.00 0.00 0.00 2.32
5577 5864 4.000325 CTCCGTATGTTGTGTCCATTTGA 59.000 43.478 0.00 0.00 0.00 2.69
5578 5865 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
5579 5866 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
5580 5867 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
5581 5868 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
5582 5869 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
5583 5870 3.726607 TGTTGTGTCCATTTGAAATGCC 58.273 40.909 12.26 5.75 0.00 4.40
5584 5871 3.387374 TGTTGTGTCCATTTGAAATGCCT 59.613 39.130 12.26 0.00 0.00 4.75
5585 5872 4.586421 TGTTGTGTCCATTTGAAATGCCTA 59.414 37.500 12.26 0.00 0.00 3.93
5586 5873 5.163513 GTTGTGTCCATTTGAAATGCCTAG 58.836 41.667 12.26 0.00 0.00 3.02
5587 5874 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
5588 5875 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
5589 5876 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
5590 5877 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
5591 5878 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
5592 5879 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
5593 5880 5.123820 TCCATTTGAAATGCCTAGAAAGACG 59.876 40.000 12.26 0.00 0.00 4.18
5594 5881 5.123820 CCATTTGAAATGCCTAGAAAGACGA 59.876 40.000 12.26 0.00 0.00 4.20
5595 5882 6.349280 CCATTTGAAATGCCTAGAAAGACGAA 60.349 38.462 12.26 0.00 0.00 3.85
5596 5883 6.817765 TTTGAAATGCCTAGAAAGACGAAT 57.182 33.333 0.00 0.00 0.00 3.34
5597 5884 7.915293 TTTGAAATGCCTAGAAAGACGAATA 57.085 32.000 0.00 0.00 0.00 1.75
5598 5885 8.506168 TTTGAAATGCCTAGAAAGACGAATAT 57.494 30.769 0.00 0.00 0.00 1.28
5599 5886 8.506168 TTGAAATGCCTAGAAAGACGAATATT 57.494 30.769 0.00 0.00 0.00 1.28
5600 5887 8.506168 TGAAATGCCTAGAAAGACGAATATTT 57.494 30.769 0.00 0.00 0.00 1.40
5601 5888 8.397906 TGAAATGCCTAGAAAGACGAATATTTG 58.602 33.333 0.78 0.78 0.00 2.32
5602 5889 6.867662 ATGCCTAGAAAGACGAATATTTGG 57.132 37.500 7.61 0.00 0.00 3.28
5603 5890 5.123227 TGCCTAGAAAGACGAATATTTGGG 58.877 41.667 7.61 0.00 0.00 4.12
5604 5891 5.104693 TGCCTAGAAAGACGAATATTTGGGA 60.105 40.000 7.61 0.00 0.00 4.37
5605 5892 5.820947 GCCTAGAAAGACGAATATTTGGGAA 59.179 40.000 7.61 0.00 0.00 3.97
5606 5893 6.238402 GCCTAGAAAGACGAATATTTGGGAAC 60.238 42.308 7.61 0.00 0.00 3.62
5607 5894 6.821665 CCTAGAAAGACGAATATTTGGGAACA 59.178 38.462 7.61 0.00 39.83 3.18
5608 5895 6.743575 AGAAAGACGAATATTTGGGAACAG 57.256 37.500 7.61 0.00 44.54 3.16
5609 5896 6.472887 AGAAAGACGAATATTTGGGAACAGA 58.527 36.000 7.61 0.00 44.54 3.41
5610 5897 6.595716 AGAAAGACGAATATTTGGGAACAGAG 59.404 38.462 7.61 0.00 44.54 3.35
5611 5898 4.770795 AGACGAATATTTGGGAACAGAGG 58.229 43.478 7.61 0.00 44.54 3.69
5612 5899 3.877508 GACGAATATTTGGGAACAGAGGG 59.122 47.826 7.61 0.00 44.54 4.30
5613 5900 3.521937 ACGAATATTTGGGAACAGAGGGA 59.478 43.478 7.61 0.00 44.54 4.20
5614 5901 4.130118 CGAATATTTGGGAACAGAGGGAG 58.870 47.826 0.00 0.00 44.54 4.30
5615 5902 4.384208 CGAATATTTGGGAACAGAGGGAGT 60.384 45.833 0.00 0.00 44.54 3.85
5616 5903 5.163343 CGAATATTTGGGAACAGAGGGAGTA 60.163 44.000 0.00 0.00 44.54 2.59
5617 5904 5.896073 ATATTTGGGAACAGAGGGAGTAG 57.104 43.478 0.00 0.00 44.54 2.57
5618 5905 2.715763 TTGGGAACAGAGGGAGTAGT 57.284 50.000 0.00 0.00 44.54 2.73
5619 5906 2.715763 TGGGAACAGAGGGAGTAGTT 57.284 50.000 0.00 0.00 35.01 2.24
5620 5907 2.986050 TGGGAACAGAGGGAGTAGTTT 58.014 47.619 0.00 0.00 35.01 2.66
5621 5908 2.637872 TGGGAACAGAGGGAGTAGTTTG 59.362 50.000 0.00 0.00 35.01 2.93
5622 5909 2.904434 GGGAACAGAGGGAGTAGTTTGA 59.096 50.000 0.00 0.00 0.00 2.69
5623 5910 3.519913 GGGAACAGAGGGAGTAGTTTGAT 59.480 47.826 0.00 0.00 0.00 2.57
5624 5911 4.715297 GGGAACAGAGGGAGTAGTTTGATA 59.285 45.833 0.00 0.00 0.00 2.15
5625 5912 5.189145 GGGAACAGAGGGAGTAGTTTGATAA 59.811 44.000 0.00 0.00 0.00 1.75
5626 5913 6.342111 GGAACAGAGGGAGTAGTTTGATAAG 58.658 44.000 0.00 0.00 0.00 1.73
5627 5914 6.154706 GGAACAGAGGGAGTAGTTTGATAAGA 59.845 42.308 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.754667 GGACCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
7 8 2.798148 ATTGGACCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 0.00 4.26
8 9 1.019278 CATTGGACCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
9 10 1.004320 CATTGGACCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
10 11 2.686816 GCATTGGACCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
11 12 2.359478 GCATTGGACCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
12 13 3.131478 GGCATTGGACCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
13 14 2.034999 TGGCATTGGACCCGGTTC 59.965 61.111 0.00 0.00 0.00 3.62
14 15 2.282887 GTGGCATTGGACCCGGTT 60.283 61.111 0.00 0.00 0.00 4.44
15 16 4.360405 GGTGGCATTGGACCCGGT 62.360 66.667 0.00 0.00 0.00 5.28
16 17 3.660422 ATGGTGGCATTGGACCCGG 62.660 63.158 0.00 0.00 0.00 5.73
17 18 1.682005 AATGGTGGCATTGGACCCG 60.682 57.895 0.00 0.00 0.00 5.28
18 19 1.899617 CAATGGTGGCATTGGACCC 59.100 57.895 0.00 0.00 38.52 4.46
29 30 0.960364 CAGAACCGGGACCAATGGTG 60.960 60.000 10.84 0.00 35.25 4.17
30 31 1.378762 CAGAACCGGGACCAATGGT 59.621 57.895 3.74 3.74 39.44 3.55
31 32 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
32 33 0.255890 ATCCAGAACCGGGACCAATG 59.744 55.000 6.32 0.00 37.23 2.82
33 34 0.999712 AATCCAGAACCGGGACCAAT 59.000 50.000 6.32 0.00 37.23 3.16
34 35 0.037590 CAATCCAGAACCGGGACCAA 59.962 55.000 6.32 0.00 37.23 3.67
35 36 0.838554 TCAATCCAGAACCGGGACCA 60.839 55.000 6.32 0.00 37.23 4.02
36 37 0.326927 TTCAATCCAGAACCGGGACC 59.673 55.000 6.32 0.00 37.23 4.46
37 38 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
38 39 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
43 44 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
44 45 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
45 46 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
46 47 3.206150 CATTAGTCCCGGTTCAATCCAG 58.794 50.000 0.00 0.00 0.00 3.86
47 48 2.092646 CCATTAGTCCCGGTTCAATCCA 60.093 50.000 0.00 0.00 0.00 3.41
48 49 2.572290 CCATTAGTCCCGGTTCAATCC 58.428 52.381 0.00 0.00 0.00 3.01
49 50 2.092592 ACCCATTAGTCCCGGTTCAATC 60.093 50.000 0.00 0.00 0.00 2.67
50 51 1.920351 ACCCATTAGTCCCGGTTCAAT 59.080 47.619 0.00 0.00 0.00 2.57
51 52 1.364269 ACCCATTAGTCCCGGTTCAA 58.636 50.000 0.00 0.00 0.00 2.69
52 53 1.003812 CAACCCATTAGTCCCGGTTCA 59.996 52.381 0.00 0.00 36.45 3.18
53 54 1.279846 TCAACCCATTAGTCCCGGTTC 59.720 52.381 0.00 0.00 36.45 3.62
54 55 1.003928 GTCAACCCATTAGTCCCGGTT 59.996 52.381 0.00 0.00 39.18 4.44
55 56 0.616891 GTCAACCCATTAGTCCCGGT 59.383 55.000 0.00 0.00 0.00 5.28
56 57 0.107361 GGTCAACCCATTAGTCCCGG 60.107 60.000 0.00 0.00 0.00 5.73
57 58 3.471354 GGTCAACCCATTAGTCCCG 57.529 57.895 0.00 0.00 0.00 5.14
68 69 4.717313 GTCCAGGCCGGGTCAACC 62.717 72.222 22.25 0.00 34.36 3.77
69 70 4.717313 GGTCCAGGCCGGGTCAAC 62.717 72.222 22.25 12.57 34.36 3.18
72 73 3.728373 ATTGGTCCAGGCCGGGTC 61.728 66.667 22.25 16.31 34.36 4.46
73 74 4.047125 CATTGGTCCAGGCCGGGT 62.047 66.667 22.25 0.00 34.36 5.28
79 80 2.460476 AAAGGGGGCATTGGTCCAGG 62.460 60.000 0.00 0.00 42.08 4.45
80 81 0.545071 AAAAGGGGGCATTGGTCCAG 60.545 55.000 0.00 0.00 42.08 3.86
81 82 0.544120 GAAAAGGGGGCATTGGTCCA 60.544 55.000 0.00 0.00 42.08 4.02
82 83 0.252239 AGAAAAGGGGGCATTGGTCC 60.252 55.000 0.00 0.00 38.40 4.46
83 84 2.100197 GTAGAAAAGGGGGCATTGGTC 58.900 52.381 0.00 0.00 0.00 4.02
84 85 1.716503 AGTAGAAAAGGGGGCATTGGT 59.283 47.619 0.00 0.00 0.00 3.67
85 86 2.532250 AGTAGAAAAGGGGGCATTGG 57.468 50.000 0.00 0.00 0.00 3.16
86 87 3.947834 CACTAGTAGAAAAGGGGGCATTG 59.052 47.826 3.59 0.00 0.00 2.82
87 88 3.850173 TCACTAGTAGAAAAGGGGGCATT 59.150 43.478 3.59 0.00 0.00 3.56
88 89 3.200165 GTCACTAGTAGAAAAGGGGGCAT 59.800 47.826 3.59 0.00 0.00 4.40
89 90 2.570302 GTCACTAGTAGAAAAGGGGGCA 59.430 50.000 3.59 0.00 0.00 5.36
90 91 2.838813 AGTCACTAGTAGAAAAGGGGGC 59.161 50.000 3.59 0.00 0.00 5.80
91 92 3.197983 CCAGTCACTAGTAGAAAAGGGGG 59.802 52.174 3.59 0.00 0.00 5.40
92 93 3.838903 ACCAGTCACTAGTAGAAAAGGGG 59.161 47.826 3.59 1.08 0.00 4.79
93 94 4.822026 CACCAGTCACTAGTAGAAAAGGG 58.178 47.826 3.59 2.62 0.00 3.95
94 95 4.246458 GCACCAGTCACTAGTAGAAAAGG 58.754 47.826 3.59 1.96 0.00 3.11
95 96 4.883083 TGCACCAGTCACTAGTAGAAAAG 58.117 43.478 3.59 0.00 0.00 2.27
96 97 4.948341 TGCACCAGTCACTAGTAGAAAA 57.052 40.909 3.59 0.00 0.00 2.29
97 98 4.100344 TGTTGCACCAGTCACTAGTAGAAA 59.900 41.667 3.59 0.00 0.00 2.52
98 99 3.639561 TGTTGCACCAGTCACTAGTAGAA 59.360 43.478 3.59 0.00 0.00 2.10
99 100 3.227614 TGTTGCACCAGTCACTAGTAGA 58.772 45.455 3.59 0.00 0.00 2.59
100 101 3.660501 TGTTGCACCAGTCACTAGTAG 57.339 47.619 0.00 0.00 0.00 2.57
101 102 3.832490 AGATGTTGCACCAGTCACTAGTA 59.168 43.478 0.00 0.00 0.00 1.82
102 103 2.634940 AGATGTTGCACCAGTCACTAGT 59.365 45.455 0.00 0.00 0.00 2.57
103 104 3.325293 AGATGTTGCACCAGTCACTAG 57.675 47.619 0.00 0.00 0.00 2.57
104 105 5.420725 AATAGATGTTGCACCAGTCACTA 57.579 39.130 0.00 0.00 0.00 2.74
105 106 3.988976 ATAGATGTTGCACCAGTCACT 57.011 42.857 0.00 0.00 0.00 3.41
106 107 4.455533 TCAAATAGATGTTGCACCAGTCAC 59.544 41.667 0.00 0.00 0.00 3.67
107 108 4.650734 TCAAATAGATGTTGCACCAGTCA 58.349 39.130 0.00 0.00 0.00 3.41
108 109 5.587844 AGATCAAATAGATGTTGCACCAGTC 59.412 40.000 0.00 0.00 37.00 3.51
148 149 4.489306 AACTGTGGCTATACTTTCCCTC 57.511 45.455 0.00 0.00 0.00 4.30
149 150 6.157994 TCATTAACTGTGGCTATACTTTCCCT 59.842 38.462 0.00 0.00 0.00 4.20
150 151 6.354130 TCATTAACTGTGGCTATACTTTCCC 58.646 40.000 0.00 0.00 0.00 3.97
153 154 9.461312 TGAATTCATTAACTGTGGCTATACTTT 57.539 29.630 3.38 0.00 0.00 2.66
235 267 3.946308 TGTTTTCGTCGTTAATGCACA 57.054 38.095 0.00 0.00 0.00 4.57
273 305 4.751767 AACCCAGCAAGAAAACATTTCA 57.248 36.364 5.71 0.00 0.00 2.69
390 422 1.347378 TCTTGGCCCTTGCAAAAATCC 59.653 47.619 0.00 0.14 40.13 3.01
401 433 2.582636 ACAAATATCCTGTCTTGGCCCT 59.417 45.455 0.00 0.00 0.00 5.19
408 440 6.737720 TGCAGAGATACAAATATCCTGTCT 57.262 37.500 11.26 0.00 38.43 3.41
554 588 2.490328 TTCTTTGCTTGTTGCCTTCG 57.510 45.000 0.00 0.00 42.00 3.79
626 660 0.321671 TGCGCTCCAAAGCTAGAAGT 59.678 50.000 9.73 0.00 46.91 3.01
674 708 2.027745 AGTGCACCACCAGATTAGAGTG 60.028 50.000 14.63 0.00 34.49 3.51
718 760 6.472887 TGGACTGAAATTTCGGAAATAGTCT 58.527 36.000 29.48 7.96 35.66 3.24
728 770 5.682862 CACAGAAACTTGGACTGAAATTTCG 59.317 40.000 13.34 10.36 35.85 3.46
772 814 5.047188 TGTATGTATGTGCATACCTCAACG 58.953 41.667 16.79 0.00 46.34 4.10
825 867 7.168219 ACTTATGCAACAGAATACTTGAAGGA 58.832 34.615 0.00 0.00 0.00 3.36
841 883 8.560355 TCAAAGAATTAGTGCTACTTATGCAA 57.440 30.769 0.00 0.00 42.41 4.08
868 910 2.223386 GCGTTAGTTTTGTGCTTGACCA 60.223 45.455 0.00 0.00 0.00 4.02
883 925 3.430895 ACAACAGAATGGTAACGCGTTAG 59.569 43.478 30.64 19.14 43.62 2.34
889 931 3.249799 TCTTGCACAACAGAATGGTAACG 59.750 43.478 0.00 0.00 43.62 3.18
1434 1522 4.452114 TCTTTGGAACACTCACATGATTCG 59.548 41.667 0.00 0.00 39.29 3.34
1555 1644 4.661222 TCCAAGCATGAAATTACACAGGA 58.339 39.130 0.00 0.00 0.00 3.86
1559 1648 5.048083 TCCAGTTCCAAGCATGAAATTACAC 60.048 40.000 0.00 0.00 0.00 2.90
1569 1658 3.327757 TCACTACTTCCAGTTCCAAGCAT 59.672 43.478 0.00 0.00 0.00 3.79
1661 1750 7.987649 TCACAATGTAGGTCGTTTAAAAGTTT 58.012 30.769 1.02 0.00 0.00 2.66
1815 1905 4.568956 TCTCGCTTCATCAACATCTTTCA 58.431 39.130 0.00 0.00 0.00 2.69
2040 2130 5.125097 AGTTTCAGCTCCTCTGCAATTAATG 59.875 40.000 0.00 0.00 42.56 1.90
2056 2146 0.868406 CCGAGTGGTCAAGTTTCAGC 59.132 55.000 0.00 0.00 0.00 4.26
2074 2164 5.858381 TGCTTGTCTAGAATGGATATCACC 58.142 41.667 4.83 0.00 0.00 4.02
2144 2234 7.200434 TCATTAGCCCAACTCTTTCTATTCT 57.800 36.000 0.00 0.00 0.00 2.40
2145 2235 8.457238 AATCATTAGCCCAACTCTTTCTATTC 57.543 34.615 0.00 0.00 0.00 1.75
2155 2245 4.829492 GCCTGATTAATCATTAGCCCAACT 59.171 41.667 18.26 0.00 36.02 3.16
2163 2253 4.043310 CCCTCAGGGCCTGATTAATCATTA 59.957 45.833 35.03 10.30 39.92 1.90
2270 2366 4.139786 GCCCATATCATCATGTTGTCACT 58.860 43.478 3.76 0.00 0.00 3.41
2272 2368 3.138839 AGGCCCATATCATCATGTTGTCA 59.861 43.478 0.00 0.00 0.00 3.58
2324 2426 3.991367 TGTCTGCTATCTCATCATGCTG 58.009 45.455 0.00 0.00 0.00 4.41
2367 2469 2.501723 GGTATGATCGCAGGGTGGATAT 59.498 50.000 0.00 0.00 0.00 1.63
2385 2499 6.408035 TGAAACACTGAACTTGTTAGTGGTA 58.592 36.000 18.06 4.96 41.21 3.25
2388 2505 5.739161 GCTTGAAACACTGAACTTGTTAGTG 59.261 40.000 15.02 15.02 45.48 2.74
2403 2520 7.119699 CCTCTTCATGTAGTATTGCTTGAAACA 59.880 37.037 0.00 0.00 34.40 2.83
2462 2579 1.468520 CATTGTTGGGTCGATGTCCAC 59.531 52.381 4.87 2.79 32.00 4.02
2500 2617 8.438676 AGTTACAATGCAGGAATAACTCATAC 57.561 34.615 8.76 0.00 31.96 2.39
2539 2680 0.609957 TGGAAGCATGAGCAACCCAG 60.610 55.000 0.00 0.00 45.49 4.45
2566 2707 5.487433 CCTTGTATAATCCCATCGCACATA 58.513 41.667 0.00 0.00 0.00 2.29
2581 2723 2.771943 CCTTGCTCTGTCCCCTTGTATA 59.228 50.000 0.00 0.00 0.00 1.47
2604 2746 6.741992 TTCCATGCAACTCAACACTAATAG 57.258 37.500 0.00 0.00 0.00 1.73
2616 2758 5.306678 TCCCAATTTAACTTTCCATGCAACT 59.693 36.000 0.00 0.00 0.00 3.16
2661 2803 5.851703 GGCTTCATACGTTTCAAGAACTTTC 59.148 40.000 0.00 0.00 0.00 2.62
2662 2804 5.531287 AGGCTTCATACGTTTCAAGAACTTT 59.469 36.000 0.00 0.00 0.00 2.66
2676 2833 6.587273 AGTATCAGAAAAGGAGGCTTCATAC 58.413 40.000 0.00 0.00 0.00 2.39
2681 2838 5.505181 TCAAGTATCAGAAAAGGAGGCTT 57.495 39.130 0.00 0.00 0.00 4.35
2710 2867 2.301346 GGCCCTTGTTCATAGACATGG 58.699 52.381 0.00 3.67 41.85 3.66
2711 2868 3.003394 TGGCCCTTGTTCATAGACATG 57.997 47.619 0.00 0.00 0.00 3.21
2723 2880 0.184451 ATCCAGCAGTATGGCCCTTG 59.816 55.000 0.00 0.00 40.41 3.61
2735 2892 2.958355 TCGATGTGACTGATATCCAGCA 59.042 45.455 0.00 0.00 46.81 4.41
2743 2900 8.843885 ATTTCATATTCATCGATGTGACTGAT 57.156 30.769 24.09 11.31 28.57 2.90
2757 2914 9.716531 TTTGCAAACCATGTAATTTCATATTCA 57.283 25.926 8.05 0.00 33.42 2.57
2840 2997 2.158784 ACAAGCCACTTGGTAACGGTAA 60.159 45.455 11.69 0.00 44.81 2.85
2853 3010 1.340889 TGGAATGCTCAAACAAGCCAC 59.659 47.619 0.00 0.00 41.77 5.01
2901 3058 1.470632 CCGCAAAACTGAAGGCACAAA 60.471 47.619 0.00 0.00 0.00 2.83
2920 3077 1.889170 CTTTTGAGGAAAGGAGGTGCC 59.111 52.381 0.00 0.00 40.87 5.01
2935 3092 1.098050 ATCTTAGGCGGCTGCTTTTG 58.902 50.000 23.55 6.36 42.25 2.44
2942 3099 0.181350 CCAAGGAATCTTAGGCGGCT 59.819 55.000 18.33 18.33 0.00 5.52
2944 3101 1.486726 AGTCCAAGGAATCTTAGGCGG 59.513 52.381 0.00 0.00 0.00 6.13
2987 3144 1.639722 TGATCCTCTCCGTCACCAAA 58.360 50.000 0.00 0.00 0.00 3.28
2988 3145 1.866015 ATGATCCTCTCCGTCACCAA 58.134 50.000 0.00 0.00 0.00 3.67
3034 3191 7.464306 TGTGTAACGAAGGTCTAACACCCAG 62.464 48.000 0.00 0.00 44.03 4.45
3210 3367 1.504912 CCTGGATGTCTCCCACTGAT 58.495 55.000 0.00 0.00 41.29 2.90
3214 3371 0.471617 CATCCCTGGATGTCTCCCAC 59.528 60.000 16.50 0.00 44.93 4.61
3292 3449 1.128692 GTCGGCAAAACTTCCATCTCG 59.871 52.381 0.00 0.00 0.00 4.04
3305 3462 2.083774 CTTTGATAGGCTTGTCGGCAA 58.916 47.619 0.91 0.91 41.46 4.52
3336 3493 1.979469 CGTCAAGTACAAGCACTCGAG 59.021 52.381 11.84 11.84 0.00 4.04
3355 3512 0.538516 TTTCCACCCCATCACAACCG 60.539 55.000 0.00 0.00 0.00 4.44
3386 3543 2.113243 GACGAAGGAAGCCCACCAGT 62.113 60.000 0.00 0.00 33.88 4.00
3467 3624 6.819146 GGTGGACAAAAATGTTTGAAAGGTAA 59.181 34.615 15.43 0.00 45.99 2.85
3567 3724 0.179015 TAGCCCACGCAGGAACAAAA 60.179 50.000 0.00 0.00 41.22 2.44
3779 3936 0.452184 CGATGACACGTAGCTCCAGT 59.548 55.000 0.00 0.00 0.00 4.00
3788 3945 3.057104 TCAATAGTTGACCGATGACACGT 60.057 43.478 0.00 0.00 34.08 4.49
3853 4013 1.592669 CCGGACTAGCCTTGCATCG 60.593 63.158 0.00 0.00 0.00 3.84
4132 4298 0.248825 CACTCCCTTCAGCGATCTCG 60.249 60.000 0.00 0.00 43.27 4.04
4150 4316 3.329386 CAACTCGCTCTCCAAGAAATCA 58.671 45.455 0.00 0.00 0.00 2.57
4151 4317 2.675348 CCAACTCGCTCTCCAAGAAATC 59.325 50.000 0.00 0.00 0.00 2.17
4239 4405 3.134804 AGGAGTCACAATAGCACATACCC 59.865 47.826 0.00 0.00 0.00 3.69
4256 4422 1.077169 GTTCCCCCAAAATGGAGGAGT 59.923 52.381 0.00 0.00 40.96 3.85
4321 4487 0.955919 CCTGGCTCGTTTGGAAGACC 60.956 60.000 0.00 0.00 0.00 3.85
4338 4504 0.687757 TAGCTCCAGCAATCCGTCCT 60.688 55.000 0.48 0.00 45.16 3.85
4611 4789 3.525609 TGGTGGTCAGCTTTGGGAATATA 59.474 43.478 1.84 0.00 0.00 0.86
4612 4790 2.311542 TGGTGGTCAGCTTTGGGAATAT 59.688 45.455 1.84 0.00 0.00 1.28
4827 5008 3.868754 GCAGTTTCTTCTTGTATCGGGGT 60.869 47.826 0.00 0.00 0.00 4.95
4905 5086 5.068198 TCAGTGGTAGTGTAGAAACGAAACT 59.932 40.000 0.00 0.00 0.00 2.66
4936 5119 8.033626 CGAAAAGGGTTGAGTAAGTAAGTCTAT 58.966 37.037 0.00 0.00 0.00 1.98
4945 5128 3.606153 CGCAACGAAAAGGGTTGAGTAAG 60.606 47.826 8.69 0.00 45.85 2.34
4969 5152 3.428870 CACCTAAACAGCAAGTGTAGACG 59.571 47.826 7.82 0.00 39.98 4.18
5020 5207 2.207988 TCCATCCAAGTCCCATGTCAT 58.792 47.619 0.00 0.00 0.00 3.06
5075 5265 4.025401 ACGAAAAGGCCAAGCGCG 62.025 61.111 5.01 0.00 38.94 6.86
5121 5311 1.228245 GACAGCCAGCCAAGAACCA 60.228 57.895 0.00 0.00 0.00 3.67
5154 5345 2.095461 CTGAAGGGCTAAGCTTTTCCC 58.905 52.381 21.74 21.74 39.05 3.97
5178 5369 1.092921 TCACGCCTGACACAACAACC 61.093 55.000 0.00 0.00 0.00 3.77
5188 5424 1.148273 ACCAAAAGCTCACGCCTGA 59.852 52.632 0.00 0.00 36.60 3.86
5189 5425 1.283793 CACCAAAAGCTCACGCCTG 59.716 57.895 0.00 0.00 36.60 4.85
5239 5475 2.816087 CAAGCACATACCAGTCAGCTTT 59.184 45.455 0.00 0.00 40.01 3.51
5248 5484 3.477210 TGTACACACAAGCACATACCA 57.523 42.857 0.00 0.00 0.00 3.25
5264 5500 1.103398 GGCATGGTCTGGGCATGTAC 61.103 60.000 0.00 0.00 0.00 2.90
5273 5509 1.575244 CTACACATCGGCATGGTCTG 58.425 55.000 0.00 0.00 33.82 3.51
5274 5510 0.179073 GCTACACATCGGCATGGTCT 60.179 55.000 0.00 0.00 33.82 3.85
5304 5542 1.683025 TGGCCAGGTGGATGCAATG 60.683 57.895 0.00 0.00 37.39 2.82
5305 5543 1.683365 GTGGCCAGGTGGATGCAAT 60.683 57.895 5.11 0.00 37.39 3.56
5318 5561 1.767759 ATCCTTACAAGCATGTGGCC 58.232 50.000 4.51 0.00 46.50 5.36
5322 5565 5.789643 AACAACAATCCTTACAAGCATGT 57.210 34.783 0.00 0.00 43.74 3.21
5324 5567 6.403866 TCAAACAACAATCCTTACAAGCAT 57.596 33.333 0.00 0.00 0.00 3.79
5328 5571 8.458573 AGTGTATCAAACAACAATCCTTACAA 57.541 30.769 0.00 0.00 40.63 2.41
5329 5572 9.733556 ATAGTGTATCAAACAACAATCCTTACA 57.266 29.630 0.00 0.00 40.63 2.41
5353 5597 3.141083 AGAGGGCCAGACTCACTCATATA 59.859 47.826 6.18 0.00 37.43 0.86
5355 5599 1.289231 AGAGGGCCAGACTCACTCATA 59.711 52.381 6.18 0.00 37.43 2.15
5356 5600 0.042431 AGAGGGCCAGACTCACTCAT 59.958 55.000 6.18 0.00 37.43 2.90
5357 5601 0.613292 GAGAGGGCCAGACTCACTCA 60.613 60.000 6.18 0.00 37.43 3.41
5359 5603 1.305718 GGAGAGGGCCAGACTCACT 60.306 63.158 20.70 0.75 37.43 3.41
5413 5700 1.798813 CACGGGTGCTTCTAAGTTCAC 59.201 52.381 0.00 0.00 0.00 3.18
5417 5704 3.606886 CACACGGGTGCTTCTAAGT 57.393 52.632 4.08 0.00 38.37 2.24
5428 5715 1.777030 TTAGCAAACGCACACACGGG 61.777 55.000 0.00 0.00 37.37 5.28
5430 5717 2.031037 ATTTAGCAAACGCACACACG 57.969 45.000 0.00 0.00 39.50 4.49
5439 5726 6.053650 ACGGAGGGAGTAATATTTAGCAAAC 58.946 40.000 0.00 0.00 0.00 2.93
5440 5727 6.243216 ACGGAGGGAGTAATATTTAGCAAA 57.757 37.500 0.00 0.00 0.00 3.68
5441 5728 5.881923 ACGGAGGGAGTAATATTTAGCAA 57.118 39.130 0.00 0.00 0.00 3.91
5442 5729 5.221581 GGAACGGAGGGAGTAATATTTAGCA 60.222 44.000 0.00 0.00 0.00 3.49
5443 5730 5.236282 GGAACGGAGGGAGTAATATTTAGC 58.764 45.833 0.00 0.00 0.00 3.09
5444 5731 5.306160 TGGGAACGGAGGGAGTAATATTTAG 59.694 44.000 0.00 0.00 0.00 1.85
5445 5732 5.218179 TGGGAACGGAGGGAGTAATATTTA 58.782 41.667 0.00 0.00 0.00 1.40
5446 5733 4.042174 TGGGAACGGAGGGAGTAATATTT 58.958 43.478 0.00 0.00 0.00 1.40
5447 5734 3.660959 TGGGAACGGAGGGAGTAATATT 58.339 45.455 0.00 0.00 0.00 1.28
5448 5735 3.339713 TGGGAACGGAGGGAGTAATAT 57.660 47.619 0.00 0.00 0.00 1.28
5449 5736 2.852714 TGGGAACGGAGGGAGTAATA 57.147 50.000 0.00 0.00 0.00 0.98
5450 5737 1.961133 TTGGGAACGGAGGGAGTAAT 58.039 50.000 0.00 0.00 0.00 1.89
5451 5738 1.732117 TTTGGGAACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
5452 5739 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5453 5740 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5454 5741 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
5455 5742 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
5456 5743 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
5457 5744 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
5458 5745 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
5459 5746 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
5460 5747 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
5461 5748 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
5462 5749 9.449719 TCTCTAGAAAGACAAATATTTGGGAAC 57.550 33.333 27.43 16.80 42.34 3.62
5485 5772 9.916397 CCGTATGTAGTCATTTGTTAAAATCTC 57.084 33.333 0.00 0.00 33.59 2.75
5486 5773 9.661563 TCCGTATGTAGTCATTTGTTAAAATCT 57.338 29.630 0.00 0.00 33.59 2.40
5489 5776 9.053840 TGTTCCGTATGTAGTCATTTGTTAAAA 57.946 29.630 0.00 0.00 35.70 1.52
5490 5777 8.604640 TGTTCCGTATGTAGTCATTTGTTAAA 57.395 30.769 0.00 0.00 35.70 1.52
5491 5778 8.604640 TTGTTCCGTATGTAGTCATTTGTTAA 57.395 30.769 0.00 0.00 35.70 2.01
5492 5779 8.604640 TTTGTTCCGTATGTAGTCATTTGTTA 57.395 30.769 0.00 0.00 35.70 2.41
5493 5780 7.499321 TTTGTTCCGTATGTAGTCATTTGTT 57.501 32.000 0.00 0.00 35.70 2.83
5494 5781 7.499321 TTTTGTTCCGTATGTAGTCATTTGT 57.501 32.000 0.00 0.00 35.70 2.83
5497 5784 9.444600 ACTTATTTTGTTCCGTATGTAGTCATT 57.555 29.630 0.00 0.00 35.70 2.57
5498 5785 8.879759 CACTTATTTTGTTCCGTATGTAGTCAT 58.120 33.333 0.00 0.00 38.00 3.06
5499 5786 8.089597 TCACTTATTTTGTTCCGTATGTAGTCA 58.910 33.333 0.00 0.00 0.00 3.41
5500 5787 8.470040 TCACTTATTTTGTTCCGTATGTAGTC 57.530 34.615 0.00 0.00 0.00 2.59
5501 5788 8.836268 TTCACTTATTTTGTTCCGTATGTAGT 57.164 30.769 0.00 0.00 0.00 2.73
5502 5789 9.916397 GATTCACTTATTTTGTTCCGTATGTAG 57.084 33.333 0.00 0.00 0.00 2.74
5503 5790 9.661563 AGATTCACTTATTTTGTTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
5504 5791 8.561738 AGATTCACTTATTTTGTTCCGTATGT 57.438 30.769 0.00 0.00 0.00 2.29
5505 5792 9.916397 GTAGATTCACTTATTTTGTTCCGTATG 57.084 33.333 0.00 0.00 0.00 2.39
5506 5793 9.661563 TGTAGATTCACTTATTTTGTTCCGTAT 57.338 29.630 0.00 0.00 0.00 3.06
5507 5794 8.928733 GTGTAGATTCACTTATTTTGTTCCGTA 58.071 33.333 0.00 0.00 35.68 4.02
5508 5795 7.660208 AGTGTAGATTCACTTATTTTGTTCCGT 59.340 33.333 0.00 0.00 44.92 4.69
5509 5796 8.029642 AGTGTAGATTCACTTATTTTGTTCCG 57.970 34.615 0.00 0.00 44.92 4.30
5510 5797 9.220767 AGAGTGTAGATTCACTTATTTTGTTCC 57.779 33.333 0.98 0.00 46.81 3.62
5551 5838 3.101437 TGGACACAACATACGGAGGTAT 58.899 45.455 0.00 0.00 39.96 2.73
5552 5839 2.527497 TGGACACAACATACGGAGGTA 58.473 47.619 0.00 0.00 0.00 3.08
5553 5840 1.344065 TGGACACAACATACGGAGGT 58.656 50.000 0.00 0.00 0.00 3.85
5554 5841 2.691409 ATGGACACAACATACGGAGG 57.309 50.000 0.00 0.00 0.00 4.30
5555 5842 4.000325 TCAAATGGACACAACATACGGAG 59.000 43.478 0.00 0.00 0.00 4.63
5556 5843 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
5557 5844 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
5558 5845 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
5559 5846 5.348451 GGCATTTCAAATGGACACAACATAC 59.652 40.000 12.14 0.00 0.00 2.39
5560 5847 5.245751 AGGCATTTCAAATGGACACAACATA 59.754 36.000 12.14 0.00 0.00 2.29
5561 5848 4.040706 AGGCATTTCAAATGGACACAACAT 59.959 37.500 12.14 0.00 0.00 2.71
5562 5849 3.387374 AGGCATTTCAAATGGACACAACA 59.613 39.130 12.14 0.00 0.00 3.33
5563 5850 3.993920 AGGCATTTCAAATGGACACAAC 58.006 40.909 12.14 0.00 0.00 3.32
5564 5851 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
5565 5852 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
5566 5853 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
5567 5854 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
5568 5855 6.325596 GTCTTTCTAGGCATTTCAAATGGAC 58.674 40.000 12.14 4.53 0.00 4.02
5569 5856 5.123820 CGTCTTTCTAGGCATTTCAAATGGA 59.876 40.000 12.14 0.00 0.00 3.41
5570 5857 5.123820 TCGTCTTTCTAGGCATTTCAAATGG 59.876 40.000 12.14 0.00 0.00 3.16
5571 5858 6.182039 TCGTCTTTCTAGGCATTTCAAATG 57.818 37.500 5.68 5.68 0.00 2.32
5572 5859 6.817765 TTCGTCTTTCTAGGCATTTCAAAT 57.182 33.333 0.00 0.00 0.00 2.32
5573 5860 6.817765 ATTCGTCTTTCTAGGCATTTCAAA 57.182 33.333 0.00 0.00 0.00 2.69
5574 5861 8.506168 AATATTCGTCTTTCTAGGCATTTCAA 57.494 30.769 0.00 0.00 0.00 2.69
5575 5862 8.397906 CAAATATTCGTCTTTCTAGGCATTTCA 58.602 33.333 0.00 0.00 0.00 2.69
5576 5863 7.857885 CCAAATATTCGTCTTTCTAGGCATTTC 59.142 37.037 0.00 0.00 0.00 2.17
5577 5864 7.201821 CCCAAATATTCGTCTTTCTAGGCATTT 60.202 37.037 0.00 0.00 0.00 2.32
5578 5865 6.263168 CCCAAATATTCGTCTTTCTAGGCATT 59.737 38.462 0.00 0.00 0.00 3.56
5579 5866 5.765182 CCCAAATATTCGTCTTTCTAGGCAT 59.235 40.000 0.00 0.00 0.00 4.40
5580 5867 5.104693 TCCCAAATATTCGTCTTTCTAGGCA 60.105 40.000 0.00 0.00 0.00 4.75
5581 5868 5.365619 TCCCAAATATTCGTCTTTCTAGGC 58.634 41.667 0.00 0.00 0.00 3.93
5582 5869 6.821665 TGTTCCCAAATATTCGTCTTTCTAGG 59.178 38.462 0.00 0.00 0.00 3.02
5583 5870 7.764443 TCTGTTCCCAAATATTCGTCTTTCTAG 59.236 37.037 0.00 0.00 0.00 2.43
5584 5871 7.617225 TCTGTTCCCAAATATTCGTCTTTCTA 58.383 34.615 0.00 0.00 0.00 2.10
5585 5872 6.472887 TCTGTTCCCAAATATTCGTCTTTCT 58.527 36.000 0.00 0.00 0.00 2.52
5586 5873 6.183360 CCTCTGTTCCCAAATATTCGTCTTTC 60.183 42.308 0.00 0.00 0.00 2.62
5587 5874 5.648092 CCTCTGTTCCCAAATATTCGTCTTT 59.352 40.000 0.00 0.00 0.00 2.52
5588 5875 5.186198 CCTCTGTTCCCAAATATTCGTCTT 58.814 41.667 0.00 0.00 0.00 3.01
5589 5876 4.384208 CCCTCTGTTCCCAAATATTCGTCT 60.384 45.833 0.00 0.00 0.00 4.18
5590 5877 3.877508 CCCTCTGTTCCCAAATATTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
5591 5878 3.521937 TCCCTCTGTTCCCAAATATTCGT 59.478 43.478 0.00 0.00 0.00 3.85
5592 5879 4.130118 CTCCCTCTGTTCCCAAATATTCG 58.870 47.826 0.00 0.00 0.00 3.34
5593 5880 5.117406 ACTCCCTCTGTTCCCAAATATTC 57.883 43.478 0.00 0.00 0.00 1.75
5594 5881 5.731678 ACTACTCCCTCTGTTCCCAAATATT 59.268 40.000 0.00 0.00 0.00 1.28
5595 5882 5.289510 ACTACTCCCTCTGTTCCCAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
5596 5883 4.695606 ACTACTCCCTCTGTTCCCAAATA 58.304 43.478 0.00 0.00 0.00 1.40
5597 5884 3.532102 ACTACTCCCTCTGTTCCCAAAT 58.468 45.455 0.00 0.00 0.00 2.32
5598 5885 2.986050 ACTACTCCCTCTGTTCCCAAA 58.014 47.619 0.00 0.00 0.00 3.28
5599 5886 2.715763 ACTACTCCCTCTGTTCCCAA 57.284 50.000 0.00 0.00 0.00 4.12
5600 5887 2.637872 CAAACTACTCCCTCTGTTCCCA 59.362 50.000 0.00 0.00 0.00 4.37
5601 5888 2.904434 TCAAACTACTCCCTCTGTTCCC 59.096 50.000 0.00 0.00 0.00 3.97
5602 5889 4.828072 ATCAAACTACTCCCTCTGTTCC 57.172 45.455 0.00 0.00 0.00 3.62
5603 5890 7.171630 TCTTATCAAACTACTCCCTCTGTTC 57.828 40.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.