Multiple sequence alignment - TraesCS6B01G430800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G430800 chr6B 100.000 5486 0 0 1 5486 698973724 698979209 0.000000e+00 10131.0
1 TraesCS6B01G430800 chr6B 88.301 2248 200 29 2529 4727 698989193 698991426 0.000000e+00 2636.0
2 TraesCS6B01G430800 chr6B 88.033 2156 218 21 354 2486 698986565 698988703 0.000000e+00 2516.0
3 TraesCS6B01G430800 chr6B 88.962 1676 157 16 2531 4189 698104444 698106108 0.000000e+00 2045.0
4 TraesCS6B01G430800 chr6B 86.235 1809 201 16 632 2437 698102228 698103991 0.000000e+00 1917.0
5 TraesCS6B01G430800 chr6B 80.163 615 98 14 4175 4773 698106292 698106898 6.520000e-119 438.0
6 TraesCS6B01G430800 chr6B 97.727 220 4 1 1 220 698965785 698966003 1.440000e-100 377.0
7 TraesCS6B01G430800 chr6B 87.097 93 6 1 5163 5255 698107720 698107806 3.500000e-17 100.0
8 TraesCS6B01G430800 chr6B 83.838 99 11 5 659 757 698089605 698089698 7.570000e-14 89.8
9 TraesCS6B01G430800 chr6B 84.536 97 7 4 5268 5357 698992352 698992447 7.570000e-14 89.8
10 TraesCS6B01G430800 chr6D 92.941 2890 130 25 2527 5387 459246360 459249204 0.000000e+00 4139.0
11 TraesCS6B01G430800 chr6D 89.927 2184 189 15 2529 4690 458975510 458977684 0.000000e+00 2785.0
12 TraesCS6B01G430800 chr6D 95.652 1702 69 3 796 2494 459244191 459245890 0.000000e+00 2728.0
13 TraesCS6B01G430800 chr6D 87.397 2182 199 36 2529 4644 459263515 459265686 0.000000e+00 2436.0
14 TraesCS6B01G430800 chr6D 86.969 2164 214 36 354 2493 459048991 459051110 0.000000e+00 2372.0
15 TraesCS6B01G430800 chr6D 86.540 2162 225 34 354 2493 458972832 458974949 0.000000e+00 2320.0
16 TraesCS6B01G430800 chr6D 85.217 2070 243 40 366 2406 459046142 459048177 0.000000e+00 2069.0
17 TraesCS6B01G430800 chr6D 87.059 1785 196 22 632 2402 458970683 458972446 0.000000e+00 1984.0
18 TraesCS6B01G430800 chr6D 90.466 1353 111 15 2530 3875 459051665 459053006 0.000000e+00 1768.0
19 TraesCS6B01G430800 chr6D 87.443 1529 158 17 354 1865 459252141 459253652 0.000000e+00 1729.0
20 TraesCS6B01G430800 chr6D 86.495 933 89 20 3871 4773 459058146 459059071 0.000000e+00 990.0
21 TraesCS6B01G430800 chr6D 87.844 436 35 4 354 771 459243762 459244197 3.820000e-136 496.0
22 TraesCS6B01G430800 chr6D 97.273 220 6 0 1 220 213740019 213740238 1.870000e-99 374.0
23 TraesCS6B01G430800 chr6D 97.273 220 6 0 1 220 213747664 213747883 1.870000e-99 374.0
24 TraesCS6B01G430800 chr6D 94.737 133 5 2 220 352 459243570 459243700 7.200000e-49 206.0
25 TraesCS6B01G430800 chr6D 87.000 100 4 3 5037 5132 459059656 459059750 2.700000e-18 104.0
26 TraesCS6B01G430800 chr6A 93.033 2641 123 17 2651 5267 605361583 605364186 0.000000e+00 3801.0
27 TraesCS6B01G430800 chr6A 97.483 2145 46 4 354 2494 605358349 605360489 0.000000e+00 3655.0
28 TraesCS6B01G430800 chr6A 89.072 2251 210 26 2529 4760 605337495 605339728 0.000000e+00 2761.0
29 TraesCS6B01G430800 chr6A 88.544 2156 214 14 354 2493 605366444 605368582 0.000000e+00 2582.0
30 TraesCS6B01G430800 chr6A 89.481 1350 128 10 1071 2409 605325181 605326527 0.000000e+00 1694.0
31 TraesCS6B01G430800 chr6A 90.472 1144 100 6 2774 3913 605368720 605369858 0.000000e+00 1500.0
32 TraesCS6B01G430800 chr6A 86.409 802 82 15 3947 4727 605369940 605370735 0.000000e+00 852.0
33 TraesCS6B01G430800 chr6A 87.940 199 4 9 5284 5479 605364231 605364412 3.330000e-52 217.0
34 TraesCS6B01G430800 chr6A 95.238 126 6 0 5208 5333 605372133 605372258 3.350000e-47 200.0
35 TraesCS6B01G430800 chr6A 87.500 96 11 1 257 352 605366288 605366382 5.810000e-20 110.0
36 TraesCS6B01G430800 chr1D 97.748 222 4 1 4 225 101634826 101634606 1.120000e-101 381.0
37 TraesCS6B01G430800 chr1D 95.045 222 11 0 1 222 181000893 181001114 3.140000e-92 350.0
38 TraesCS6B01G430800 chr2D 97.727 220 5 0 1 220 261094340 261094559 4.010000e-101 379.0
39 TraesCS6B01G430800 chr1A 96.774 217 7 0 4 220 108355564 108355348 4.040000e-96 363.0
40 TraesCS6B01G430800 chr4A 95.455 220 10 0 1 220 283099942 283100161 8.740000e-93 351.0
41 TraesCS6B01G430800 chr3D 95.455 220 10 0 1 220 235447361 235447580 8.740000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G430800 chr6B 698973724 698979209 5485 False 10131.000000 10131 100.000000 1 5486 1 chr6B.!!$F3 5485
1 TraesCS6B01G430800 chr6B 698986565 698992447 5882 False 1747.266667 2636 86.956667 354 5357 3 chr6B.!!$F5 5003
2 TraesCS6B01G430800 chr6B 698102228 698107806 5578 False 1125.000000 2045 85.614250 632 5255 4 chr6B.!!$F4 4623
3 TraesCS6B01G430800 chr6D 459263515 459265686 2171 False 2436.000000 2436 87.397000 2529 4644 1 chr6D.!!$F3 2115
4 TraesCS6B01G430800 chr6D 458970683 458977684 7001 False 2363.000000 2785 87.842000 354 4690 3 chr6D.!!$F4 4336
5 TraesCS6B01G430800 chr6D 459046142 459053006 6864 False 2069.666667 2372 87.550667 354 3875 3 chr6D.!!$F5 3521
6 TraesCS6B01G430800 chr6D 459243570 459253652 10082 False 1859.600000 4139 91.723400 220 5387 5 chr6D.!!$F7 5167
7 TraesCS6B01G430800 chr6D 459058146 459059750 1604 False 547.000000 990 86.747500 3871 5132 2 chr6D.!!$F6 1261
8 TraesCS6B01G430800 chr6A 605337495 605339728 2233 False 2761.000000 2761 89.072000 2529 4760 1 chr6A.!!$F2 2231
9 TraesCS6B01G430800 chr6A 605325181 605326527 1346 False 1694.000000 1694 89.481000 1071 2409 1 chr6A.!!$F1 1338
10 TraesCS6B01G430800 chr6A 605358349 605372258 13909 False 1614.625000 3801 90.827375 257 5479 8 chr6A.!!$F3 5222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.032130 AGATGTCGCACGTGTCACTT 59.968 50.000 18.38 11.66 0.00 3.16 F
718 817 0.033601 AAAACCCAGCAGTCACACCA 60.034 50.000 0.00 0.00 0.00 4.17 F
1644 1760 1.097547 CATGGAACGGATCAGCACCC 61.098 60.000 0.00 0.00 0.00 4.61 F
2607 6446 2.952978 ACATACAAAACTTGGGCGTGAA 59.047 40.909 0.00 0.00 34.12 3.18 F
2934 6972 1.737236 TCATATGCGTGTGCCTTGTTC 59.263 47.619 0.00 0.00 41.78 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1760 1.030457 ATACCAGACTTCGCCGGTAG 58.970 55.000 1.90 0.56 37.42 3.18 R
2160 2282 2.466846 GTGTAAGCATACGCCGTACAT 58.533 47.619 0.00 0.00 39.80 2.29 R
2934 6972 1.094073 CCTCCAAAGCTGCAGATCCG 61.094 60.000 20.43 5.68 0.00 4.18 R
4371 8670 0.111253 ACACAGGCTCTTTTGGAGGG 59.889 55.000 0.00 0.00 42.08 4.30 R
4785 16885 0.107508 TCTATGGTGCTTCTGCCTGC 60.108 55.000 0.00 0.00 38.71 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.518112 TGTTCCTTGGCGCTTGCA 60.518 55.556 7.64 0.00 41.71 4.08
18 19 2.050077 GTTCCTTGGCGCTTGCAC 60.050 61.111 7.64 0.00 41.71 4.57
19 20 2.203337 TTCCTTGGCGCTTGCACT 60.203 55.556 7.64 0.00 41.71 4.40
20 21 2.260869 TTCCTTGGCGCTTGCACTC 61.261 57.895 7.64 0.00 41.71 3.51
21 22 3.741476 CCTTGGCGCTTGCACTCC 61.741 66.667 7.64 0.00 41.71 3.85
22 23 2.670934 CTTGGCGCTTGCACTCCT 60.671 61.111 7.64 0.00 41.71 3.69
23 24 2.669569 TTGGCGCTTGCACTCCTC 60.670 61.111 7.64 0.00 41.71 3.71
24 25 4.704833 TGGCGCTTGCACTCCTCC 62.705 66.667 7.64 0.00 41.71 4.30
25 26 4.400961 GGCGCTTGCACTCCTCCT 62.401 66.667 7.64 0.00 41.71 3.69
26 27 2.817396 GCGCTTGCACTCCTCCTC 60.817 66.667 0.00 0.00 38.92 3.71
27 28 2.507992 CGCTTGCACTCCTCCTCG 60.508 66.667 0.00 0.00 0.00 4.63
28 29 2.659610 GCTTGCACTCCTCCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
29 30 1.446966 GCTTGCACTCCTCCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
30 31 1.967535 CTTGCACTCCTCCTCGTCA 59.032 57.895 0.00 0.00 0.00 4.35
31 32 0.534412 CTTGCACTCCTCCTCGTCAT 59.466 55.000 0.00 0.00 0.00 3.06
32 33 0.532573 TTGCACTCCTCCTCGTCATC 59.467 55.000 0.00 0.00 0.00 2.92
33 34 1.323271 TGCACTCCTCCTCGTCATCC 61.323 60.000 0.00 0.00 0.00 3.51
34 35 1.730487 CACTCCTCCTCGTCATCCG 59.270 63.158 0.00 0.00 38.13 4.18
35 36 1.032657 CACTCCTCCTCGTCATCCGT 61.033 60.000 0.00 0.00 37.94 4.69
36 37 1.032657 ACTCCTCCTCGTCATCCGTG 61.033 60.000 0.00 0.00 37.94 4.94
37 38 0.748367 CTCCTCCTCGTCATCCGTGA 60.748 60.000 0.00 0.00 37.94 4.35
38 39 0.323087 TCCTCCTCGTCATCCGTGAA 60.323 55.000 0.00 0.00 35.80 3.18
39 40 0.101399 CCTCCTCGTCATCCGTGAAG 59.899 60.000 0.00 0.00 35.80 3.02
40 41 0.526524 CTCCTCGTCATCCGTGAAGC 60.527 60.000 0.00 0.00 35.80 3.86
41 42 0.965866 TCCTCGTCATCCGTGAAGCT 60.966 55.000 0.00 0.00 35.80 3.74
42 43 0.526524 CCTCGTCATCCGTGAAGCTC 60.527 60.000 0.00 0.00 35.80 4.09
43 44 0.526524 CTCGTCATCCGTGAAGCTCC 60.527 60.000 0.00 0.00 35.80 4.70
44 45 1.874019 CGTCATCCGTGAAGCTCCG 60.874 63.158 0.00 0.00 35.80 4.63
45 46 1.511305 GTCATCCGTGAAGCTCCGA 59.489 57.895 0.00 0.00 35.80 4.55
46 47 0.802607 GTCATCCGTGAAGCTCCGAC 60.803 60.000 0.00 0.00 35.80 4.79
47 48 1.215382 CATCCGTGAAGCTCCGACA 59.785 57.895 0.00 0.00 0.00 4.35
48 49 0.389817 CATCCGTGAAGCTCCGACAA 60.390 55.000 0.00 0.00 0.00 3.18
49 50 0.537188 ATCCGTGAAGCTCCGACAAT 59.463 50.000 0.00 0.00 0.00 2.71
50 51 1.179152 TCCGTGAAGCTCCGACAATA 58.821 50.000 0.00 0.00 0.00 1.90
51 52 1.135199 TCCGTGAAGCTCCGACAATAC 60.135 52.381 0.00 0.00 0.00 1.89
52 53 1.278238 CGTGAAGCTCCGACAATACC 58.722 55.000 0.00 0.00 0.00 2.73
53 54 1.135083 CGTGAAGCTCCGACAATACCT 60.135 52.381 0.00 0.00 0.00 3.08
54 55 2.098607 CGTGAAGCTCCGACAATACCTA 59.901 50.000 0.00 0.00 0.00 3.08
55 56 3.243434 CGTGAAGCTCCGACAATACCTAT 60.243 47.826 0.00 0.00 0.00 2.57
56 57 4.051922 GTGAAGCTCCGACAATACCTATG 58.948 47.826 0.00 0.00 0.00 2.23
57 58 2.821991 AGCTCCGACAATACCTATGC 57.178 50.000 0.00 0.00 0.00 3.14
58 59 2.039418 AGCTCCGACAATACCTATGCA 58.961 47.619 0.00 0.00 0.00 3.96
59 60 2.634940 AGCTCCGACAATACCTATGCAT 59.365 45.455 3.79 3.79 0.00 3.96
60 61 2.738846 GCTCCGACAATACCTATGCATG 59.261 50.000 10.16 0.00 0.00 4.06
61 62 2.738846 CTCCGACAATACCTATGCATGC 59.261 50.000 11.82 11.82 0.00 4.06
62 63 2.103941 TCCGACAATACCTATGCATGCA 59.896 45.455 25.04 25.04 0.00 3.96
63 64 2.224079 CCGACAATACCTATGCATGCAC 59.776 50.000 25.37 4.94 0.00 4.57
64 65 2.871633 CGACAATACCTATGCATGCACA 59.128 45.455 25.37 11.52 0.00 4.57
65 66 3.303329 CGACAATACCTATGCATGCACAC 60.303 47.826 25.37 0.00 0.00 3.82
66 67 2.613595 ACAATACCTATGCATGCACACG 59.386 45.455 25.37 15.06 0.00 4.49
67 68 2.871633 CAATACCTATGCATGCACACGA 59.128 45.455 25.37 8.10 0.00 4.35
68 69 2.223537 TACCTATGCATGCACACGAG 57.776 50.000 25.37 16.98 0.00 4.18
69 70 0.250234 ACCTATGCATGCACACGAGT 59.750 50.000 25.37 13.36 0.00 4.18
71 72 0.654160 CTATGCATGCACACGAGTGG 59.346 55.000 25.37 3.82 45.98 4.00
81 82 3.967886 CACGAGTGGAGTGTCAAGT 57.032 52.632 0.00 0.00 35.08 3.16
83 84 2.935042 CACGAGTGGAGTGTCAAGTAG 58.065 52.381 0.00 0.00 35.08 2.57
84 85 2.293677 CACGAGTGGAGTGTCAAGTAGT 59.706 50.000 0.00 0.00 35.08 2.73
85 86 3.501062 CACGAGTGGAGTGTCAAGTAGTA 59.499 47.826 0.00 0.00 35.08 1.82
86 87 4.156190 CACGAGTGGAGTGTCAAGTAGTAT 59.844 45.833 0.00 0.00 35.08 2.12
87 88 5.353400 CACGAGTGGAGTGTCAAGTAGTATA 59.647 44.000 0.00 0.00 35.08 1.47
88 89 5.353678 ACGAGTGGAGTGTCAAGTAGTATAC 59.646 44.000 0.00 0.00 43.47 1.47
89 90 5.220815 CGAGTGGAGTGTCAAGTAGTATACC 60.221 48.000 0.00 0.00 44.47 2.73
90 91 5.577100 AGTGGAGTGTCAAGTAGTATACCA 58.423 41.667 0.00 0.00 44.47 3.25
91 92 6.195700 AGTGGAGTGTCAAGTAGTATACCAT 58.804 40.000 0.00 0.00 44.47 3.55
92 93 6.321690 AGTGGAGTGTCAAGTAGTATACCATC 59.678 42.308 0.00 0.00 44.47 3.51
93 94 5.597182 TGGAGTGTCAAGTAGTATACCATCC 59.403 44.000 0.00 0.00 44.47 3.51
94 95 5.834204 GGAGTGTCAAGTAGTATACCATCCT 59.166 44.000 0.00 0.00 44.47 3.24
95 96 6.016108 GGAGTGTCAAGTAGTATACCATCCTC 60.016 46.154 0.00 0.00 44.47 3.71
96 97 5.531659 AGTGTCAAGTAGTATACCATCCTCG 59.468 44.000 0.00 0.00 44.47 4.63
97 98 5.530171 GTGTCAAGTAGTATACCATCCTCGA 59.470 44.000 0.00 0.00 44.47 4.04
98 99 6.039047 GTGTCAAGTAGTATACCATCCTCGAA 59.961 42.308 0.00 0.00 44.47 3.71
99 100 6.262496 TGTCAAGTAGTATACCATCCTCGAAG 59.738 42.308 0.00 0.00 44.47 3.79
100 101 5.768662 TCAAGTAGTATACCATCCTCGAAGG 59.231 44.000 0.00 0.00 44.47 3.46
101 102 4.664392 AGTAGTATACCATCCTCGAAGGG 58.336 47.826 0.00 0.00 44.47 3.95
102 103 2.890814 AGTATACCATCCTCGAAGGGG 58.109 52.381 0.00 0.00 35.59 4.79
103 104 2.179424 AGTATACCATCCTCGAAGGGGT 59.821 50.000 0.00 4.16 35.59 4.95
104 105 1.718280 ATACCATCCTCGAAGGGGTC 58.282 55.000 2.16 0.00 35.59 4.46
105 106 0.337082 TACCATCCTCGAAGGGGTCA 59.663 55.000 2.16 0.00 35.59 4.02
106 107 0.546747 ACCATCCTCGAAGGGGTCAA 60.547 55.000 0.00 0.00 35.59 3.18
107 108 0.179000 CCATCCTCGAAGGGGTCAAG 59.821 60.000 0.00 0.00 35.59 3.02
108 109 0.462759 CATCCTCGAAGGGGTCAAGC 60.463 60.000 0.00 0.00 35.59 4.01
109 110 1.961180 ATCCTCGAAGGGGTCAAGCG 61.961 60.000 0.00 0.00 35.59 4.68
110 111 2.646175 CCTCGAAGGGGTCAAGCGA 61.646 63.158 0.00 0.00 0.00 4.93
111 112 1.153745 CTCGAAGGGGTCAAGCGAG 60.154 63.158 0.00 0.00 41.77 5.03
112 113 2.815647 CGAAGGGGTCAAGCGAGC 60.816 66.667 0.00 0.00 39.00 5.03
113 114 2.347490 GAAGGGGTCAAGCGAGCA 59.653 61.111 0.00 0.00 41.62 4.26
114 115 2.032681 AAGGGGTCAAGCGAGCAC 59.967 61.111 0.00 0.00 43.71 4.40
118 119 4.681978 GGTCAAGCGAGCACGGGT 62.682 66.667 5.52 0.00 39.53 5.28
119 120 2.260434 GTCAAGCGAGCACGGGTA 59.740 61.111 5.52 0.00 40.15 3.69
120 121 1.373748 GTCAAGCGAGCACGGGTAA 60.374 57.895 5.52 0.00 40.15 2.85
121 122 0.947180 GTCAAGCGAGCACGGGTAAA 60.947 55.000 5.52 0.00 40.15 2.01
122 123 0.669318 TCAAGCGAGCACGGGTAAAG 60.669 55.000 5.52 0.00 40.15 1.85
123 124 1.375523 AAGCGAGCACGGGTAAAGG 60.376 57.895 5.52 0.00 40.15 3.11
124 125 1.823169 AAGCGAGCACGGGTAAAGGA 61.823 55.000 5.52 0.00 40.15 3.36
125 126 1.810030 GCGAGCACGGGTAAAGGAG 60.810 63.158 5.52 0.00 40.15 3.69
126 127 1.888018 CGAGCACGGGTAAAGGAGA 59.112 57.895 0.00 0.00 35.72 3.71
127 128 0.460311 CGAGCACGGGTAAAGGAGAT 59.540 55.000 0.00 0.00 35.72 2.75
128 129 1.802880 CGAGCACGGGTAAAGGAGATG 60.803 57.143 0.00 0.00 35.72 2.90
129 130 1.480954 GAGCACGGGTAAAGGAGATGA 59.519 52.381 0.00 0.00 0.00 2.92
130 131 2.103263 GAGCACGGGTAAAGGAGATGAT 59.897 50.000 0.00 0.00 0.00 2.45
131 132 2.505819 AGCACGGGTAAAGGAGATGATT 59.494 45.455 0.00 0.00 0.00 2.57
132 133 2.872858 GCACGGGTAAAGGAGATGATTC 59.127 50.000 0.00 0.00 0.00 2.52
133 134 3.681594 GCACGGGTAAAGGAGATGATTCA 60.682 47.826 0.00 0.00 0.00 2.57
134 135 3.871594 CACGGGTAAAGGAGATGATTCAC 59.128 47.826 0.00 0.00 0.00 3.18
135 136 3.775316 ACGGGTAAAGGAGATGATTCACT 59.225 43.478 0.00 0.00 0.00 3.41
136 137 4.225267 ACGGGTAAAGGAGATGATTCACTT 59.775 41.667 0.00 0.00 0.00 3.16
137 138 5.186198 CGGGTAAAGGAGATGATTCACTTT 58.814 41.667 5.60 5.60 36.20 2.66
138 139 5.648092 CGGGTAAAGGAGATGATTCACTTTT 59.352 40.000 5.60 0.00 34.87 2.27
139 140 6.403636 CGGGTAAAGGAGATGATTCACTTTTG 60.404 42.308 5.60 0.00 34.87 2.44
140 141 6.434340 GGGTAAAGGAGATGATTCACTTTTGT 59.566 38.462 5.60 0.00 34.87 2.83
157 158 8.087982 CACTTTTGTGTATGTGAAGTAGATGT 57.912 34.615 0.00 0.00 44.94 3.06
158 159 8.223769 CACTTTTGTGTATGTGAAGTAGATGTC 58.776 37.037 0.00 0.00 44.94 3.06
159 160 6.944557 TTTGTGTATGTGAAGTAGATGTCG 57.055 37.500 0.00 0.00 0.00 4.35
160 161 4.421058 TGTGTATGTGAAGTAGATGTCGC 58.579 43.478 0.00 0.00 0.00 5.19
161 162 4.082463 TGTGTATGTGAAGTAGATGTCGCA 60.082 41.667 0.00 0.00 38.54 5.10
162 163 4.265556 GTGTATGTGAAGTAGATGTCGCAC 59.734 45.833 0.00 0.00 37.11 5.34
163 164 1.977188 TGTGAAGTAGATGTCGCACG 58.023 50.000 0.00 0.00 29.56 5.34
164 165 1.268625 TGTGAAGTAGATGTCGCACGT 59.731 47.619 0.00 0.00 29.56 4.49
165 166 1.649171 GTGAAGTAGATGTCGCACGTG 59.351 52.381 12.28 12.28 0.00 4.49
166 167 1.268625 TGAAGTAGATGTCGCACGTGT 59.731 47.619 18.38 0.00 0.00 4.49
167 168 1.912110 GAAGTAGATGTCGCACGTGTC 59.088 52.381 18.38 6.19 0.00 3.67
168 169 0.879090 AGTAGATGTCGCACGTGTCA 59.121 50.000 18.38 14.12 0.00 3.58
169 170 0.982673 GTAGATGTCGCACGTGTCAC 59.017 55.000 18.38 14.10 0.00 3.67
170 171 0.879090 TAGATGTCGCACGTGTCACT 59.121 50.000 18.38 14.37 0.00 3.41
171 172 0.032130 AGATGTCGCACGTGTCACTT 59.968 50.000 18.38 11.66 0.00 3.16
172 173 0.161658 GATGTCGCACGTGTCACTTG 59.838 55.000 18.38 5.12 0.00 3.16
173 174 1.831389 ATGTCGCACGTGTCACTTGC 61.831 55.000 21.27 21.27 39.63 4.01
174 175 2.964925 TCGCACGTGTCACTTGCC 60.965 61.111 24.07 10.26 39.84 4.52
175 176 4.354212 CGCACGTGTCACTTGCCG 62.354 66.667 24.07 16.70 39.84 5.69
176 177 2.964925 GCACGTGTCACTTGCCGA 60.965 61.111 20.73 0.00 37.39 5.54
177 178 2.530497 GCACGTGTCACTTGCCGAA 61.530 57.895 20.73 0.00 37.39 4.30
178 179 1.841663 GCACGTGTCACTTGCCGAAT 61.842 55.000 20.73 0.00 37.39 3.34
179 180 0.110688 CACGTGTCACTTGCCGAATG 60.111 55.000 7.58 0.00 0.00 2.67
180 181 0.249699 ACGTGTCACTTGCCGAATGA 60.250 50.000 0.65 0.00 0.00 2.57
181 182 0.865111 CGTGTCACTTGCCGAATGAA 59.135 50.000 0.65 0.00 0.00 2.57
182 183 1.398451 CGTGTCACTTGCCGAATGAAC 60.398 52.381 0.65 0.00 0.00 3.18
183 184 1.873591 GTGTCACTTGCCGAATGAACT 59.126 47.619 0.00 0.00 0.00 3.01
184 185 2.096218 GTGTCACTTGCCGAATGAACTC 60.096 50.000 0.00 0.00 0.00 3.01
185 186 2.224281 TGTCACTTGCCGAATGAACTCT 60.224 45.455 0.00 0.00 0.00 3.24
186 187 2.808543 GTCACTTGCCGAATGAACTCTT 59.191 45.455 0.00 0.00 0.00 2.85
187 188 2.807967 TCACTTGCCGAATGAACTCTTG 59.192 45.455 0.00 0.00 0.00 3.02
188 189 2.807967 CACTTGCCGAATGAACTCTTGA 59.192 45.455 0.00 0.00 0.00 3.02
189 190 2.808543 ACTTGCCGAATGAACTCTTGAC 59.191 45.455 0.00 0.00 0.00 3.18
190 191 2.542020 TGCCGAATGAACTCTTGACA 57.458 45.000 0.00 0.00 0.00 3.58
191 192 3.057969 TGCCGAATGAACTCTTGACAT 57.942 42.857 0.00 0.00 0.00 3.06
192 193 2.743664 TGCCGAATGAACTCTTGACATG 59.256 45.455 0.00 0.00 0.00 3.21
193 194 2.096496 GCCGAATGAACTCTTGACATGG 59.904 50.000 0.00 0.00 0.00 3.66
194 195 3.338249 CCGAATGAACTCTTGACATGGT 58.662 45.455 0.00 0.00 0.00 3.55
195 196 3.125829 CCGAATGAACTCTTGACATGGTG 59.874 47.826 0.00 0.00 0.00 4.17
196 197 3.996363 CGAATGAACTCTTGACATGGTGA 59.004 43.478 0.00 0.00 0.00 4.02
197 198 4.633126 CGAATGAACTCTTGACATGGTGAT 59.367 41.667 0.00 0.00 0.00 3.06
198 199 5.446875 CGAATGAACTCTTGACATGGTGATG 60.447 44.000 0.00 0.00 35.49 3.07
199 200 4.356405 TGAACTCTTGACATGGTGATGT 57.644 40.909 0.00 0.00 46.01 3.06
240 241 4.935205 TCAACATCCTTTTCAGGTGATACG 59.065 41.667 0.00 0.00 41.69 3.06
255 256 3.061429 GTGATACGCTCTTTTCAGACAGC 59.939 47.826 0.00 0.00 0.00 4.40
269 270 1.849976 GACAGCTGCACAAGACTGCC 61.850 60.000 15.27 0.00 36.21 4.85
301 302 3.306294 CCTTTTTCTTGCAAAGCTAGGGG 60.306 47.826 0.00 0.00 45.70 4.79
538 626 1.608055 TTCCTGCACCACTGATGTTG 58.392 50.000 0.00 0.00 0.00 3.33
718 817 0.033601 AAAACCCAGCAGTCACACCA 60.034 50.000 0.00 0.00 0.00 4.17
893 1003 3.181465 TGGGAAAAGCACCGCAAATAAAA 60.181 39.130 0.00 0.00 0.00 1.52
991 1104 7.675161 TCCATTATCTCAGTTCCATAGTTCA 57.325 36.000 0.00 0.00 0.00 3.18
1018 1134 2.043526 GCAATGGATCCCCTTCCCATAT 59.956 50.000 9.90 0.00 39.58 1.78
1284 1400 2.693069 ACTGATCCTTCTTCTGCAACG 58.307 47.619 0.00 0.00 0.00 4.10
1635 1751 2.816689 CAGCGTATTACATGGAACGGA 58.183 47.619 4.40 0.00 35.93 4.69
1644 1760 1.097547 CATGGAACGGATCAGCACCC 61.098 60.000 0.00 0.00 0.00 4.61
1817 1939 4.462508 TGAAGATTGACTACTCAGGCAG 57.537 45.455 0.00 0.00 42.17 4.85
2297 5272 6.295180 GGGGAAAACCTCTATATCCGAGTTAG 60.295 46.154 0.00 0.00 40.03 2.34
2482 5465 6.064717 AGAGGGTAAACTTGATAATGCCATC 58.935 40.000 0.00 0.00 0.00 3.51
2504 5487 7.859540 CATCATGATGGAACTCCCTATAATCT 58.140 38.462 25.37 0.00 35.24 2.40
2506 5489 5.984695 TGATGGAACTCCCTATAATCTCG 57.015 43.478 0.00 0.00 35.38 4.04
2507 5490 4.220821 TGATGGAACTCCCTATAATCTCGC 59.779 45.833 0.00 0.00 35.38 5.03
2509 5492 3.964688 TGGAACTCCCTATAATCTCGCAA 59.035 43.478 0.00 0.00 35.38 4.85
2511 5494 5.104693 TGGAACTCCCTATAATCTCGCAAAA 60.105 40.000 0.00 0.00 35.38 2.44
2512 5495 5.820947 GGAACTCCCTATAATCTCGCAAAAA 59.179 40.000 0.00 0.00 0.00 1.94
2513 5496 6.486993 GGAACTCCCTATAATCTCGCAAAAAT 59.513 38.462 0.00 0.00 0.00 1.82
2516 5499 8.974060 ACTCCCTATAATCTCGCAAAAATAAA 57.026 30.769 0.00 0.00 0.00 1.40
2517 5500 9.574516 ACTCCCTATAATCTCGCAAAAATAAAT 57.425 29.630 0.00 0.00 0.00 1.40
2518 5501 9.831737 CTCCCTATAATCTCGCAAAAATAAATG 57.168 33.333 0.00 0.00 0.00 2.32
2519 5502 9.567776 TCCCTATAATCTCGCAAAAATAAATGA 57.432 29.630 0.00 0.00 0.00 2.57
2607 6446 2.952978 ACATACAAAACTTGGGCGTGAA 59.047 40.909 0.00 0.00 34.12 3.18
2681 6715 6.663944 AGTATCAAGCCGAAGTTTTGTATC 57.336 37.500 0.00 0.00 0.00 2.24
2699 6733 9.707957 TTTTGTATCTCCCAAATGTTACCATAT 57.292 29.630 0.00 0.00 32.28 1.78
2702 6736 8.498575 TGTATCTCCCAAATGTTACCATATTCA 58.501 33.333 0.00 0.00 0.00 2.57
2743 6780 7.164122 TGTGAGAAATAGATTGCTTGAGAGTT 58.836 34.615 0.00 0.00 0.00 3.01
2749 6786 3.936564 AGATTGCTTGAGAGTTGAGACC 58.063 45.455 0.00 0.00 0.00 3.85
2852 6890 5.689383 TTACAGACTGAATTTTGGCAGAC 57.311 39.130 10.08 0.00 36.07 3.51
2934 6972 1.737236 TCATATGCGTGTGCCTTGTTC 59.263 47.619 0.00 0.00 41.78 3.18
2970 7008 2.350522 GAGGTAGAACACAGTGCCATG 58.649 52.381 0.00 0.00 0.00 3.66
3035 7075 9.234827 TCAATGCTATTCCATATTTCTATGTGG 57.765 33.333 0.00 0.00 42.66 4.17
3118 7159 4.691860 AATTTGGAAGAAGCTGATGTCG 57.308 40.909 0.00 0.00 0.00 4.35
3627 7688 9.872684 AATAACTGATTATCCCTCAATTGATGT 57.127 29.630 8.96 0.00 30.27 3.06
3784 7845 7.502120 AAGCAAGCAACATATTACTAGATGG 57.498 36.000 0.00 0.00 0.00 3.51
4371 8670 6.441924 TGGAGAATGGAGATATATCACTTCCC 59.558 42.308 15.08 11.63 0.00 3.97
4435 8734 1.129998 CTGACGGAGCAGCAGAAAATG 59.870 52.381 0.00 0.00 0.00 2.32
4462 15828 8.894409 TGTGAATTCTAAAAATAACATGAGCG 57.106 30.769 7.05 0.00 0.00 5.03
4471 15837 5.621197 AAATAACATGAGCGTTACAGCAA 57.379 34.783 0.00 0.00 40.15 3.91
4503 15884 1.810030 GTACCTAGCAGTGCCGTGC 60.810 63.158 12.58 5.72 44.35 5.34
4527 15908 4.024048 GCACTTTGTACAACTGTATGCTGT 60.024 41.667 8.07 0.00 32.07 4.40
4532 15913 9.496873 ACTTTGTACAACTGTATGCTGTATAAA 57.503 29.630 8.07 10.06 36.60 1.40
4579 15974 4.479619 GCAAGAGGCTCTGTTTTAACATG 58.520 43.478 19.53 10.14 37.68 3.21
4607 16002 4.101448 CTCAACCCCAGGAGCCCG 62.101 72.222 0.00 0.00 0.00 6.13
4620 16019 4.133796 GCCCGCAGCAAATGGGAC 62.134 66.667 7.26 0.00 46.41 4.46
4660 16060 3.415457 AAAGACCCTTCTCAGCAAGAG 57.585 47.619 0.09 0.09 46.14 2.85
4674 16074 4.156556 TCAGCAAGAGTTTTGGATGCATAC 59.843 41.667 0.42 0.42 39.42 2.39
4680 16080 7.318141 CAAGAGTTTTGGATGCATACAAGAAT 58.682 34.615 23.11 18.75 31.11 2.40
4702 16106 8.637986 AGAATGCAAGTTAACCAACTGAAATTA 58.362 29.630 0.88 0.00 44.41 1.40
4714 16118 7.693952 ACCAACTGAAATTATGTATGCTTACG 58.306 34.615 5.40 0.00 0.00 3.18
4733 16300 6.900299 GCTTACGAAAAAGGATAGTTGAATCG 59.100 38.462 0.00 0.00 0.00 3.34
4734 16301 7.412672 GCTTACGAAAAAGGATAGTTGAATCGT 60.413 37.037 0.00 0.00 42.73 3.73
4735 16302 8.984891 TTACGAAAAAGGATAGTTGAATCGTA 57.015 30.769 0.00 0.00 40.84 3.43
4773 16873 2.938451 TGCATGCAGTATGTCTGTTAGC 59.062 45.455 18.46 0.00 45.23 3.09
4780 16880 5.104941 TGCAGTATGTCTGTTAGCCAGTATT 60.105 40.000 0.00 0.00 45.23 1.89
4781 16881 5.817816 GCAGTATGTCTGTTAGCCAGTATTT 59.182 40.000 0.00 0.00 45.23 1.40
4785 16885 4.430007 TGTCTGTTAGCCAGTATTTAGCG 58.570 43.478 0.00 0.00 42.19 4.26
4786 16886 3.245519 GTCTGTTAGCCAGTATTTAGCGC 59.754 47.826 0.00 0.00 42.19 5.92
4787 16887 3.118920 TCTGTTAGCCAGTATTTAGCGCA 60.119 43.478 11.47 0.00 42.19 6.09
4788 16888 3.194861 TGTTAGCCAGTATTTAGCGCAG 58.805 45.455 11.47 0.00 0.00 5.18
4792 17449 0.940126 CCAGTATTTAGCGCAGGCAG 59.060 55.000 11.47 0.00 43.41 4.85
4828 17488 5.437946 GGTTCCTACCAAGGGATAAAAGAG 58.562 45.833 0.00 0.00 44.36 2.85
4848 17510 6.455360 AGAGAACTGCTGATTTGTGAAAAA 57.545 33.333 0.00 0.00 0.00 1.94
4849 17511 6.268566 AGAGAACTGCTGATTTGTGAAAAAC 58.731 36.000 0.00 0.00 0.00 2.43
4850 17512 6.096001 AGAGAACTGCTGATTTGTGAAAAACT 59.904 34.615 0.00 0.00 0.00 2.66
4851 17513 6.038356 AGAACTGCTGATTTGTGAAAAACTG 58.962 36.000 0.00 0.00 0.00 3.16
4880 17542 1.528129 CCAGTGGCTGGTTTCTTCTC 58.472 55.000 6.99 0.00 45.82 2.87
4881 17547 1.528129 CAGTGGCTGGTTTCTTCTCC 58.472 55.000 0.00 0.00 0.00 3.71
4896 17562 0.329261 TCTCCCAGGCATTTCCACAG 59.671 55.000 0.00 0.00 37.29 3.66
4906 17572 3.146066 GCATTTCCACAGACACCTTGTA 58.854 45.455 0.00 0.00 0.00 2.41
4907 17573 3.189287 GCATTTCCACAGACACCTTGTAG 59.811 47.826 0.00 0.00 0.00 2.74
4908 17574 3.485463 TTTCCACAGACACCTTGTAGG 57.515 47.619 0.00 0.00 42.49 3.18
4909 17575 0.685097 TCCACAGACACCTTGTAGGC 59.315 55.000 0.00 0.00 39.63 3.93
4910 17576 0.687354 CCACAGACACCTTGTAGGCT 59.313 55.000 0.00 0.00 39.63 4.58
4911 17577 1.072331 CCACAGACACCTTGTAGGCTT 59.928 52.381 0.00 0.00 39.63 4.35
4912 17578 2.146342 CACAGACACCTTGTAGGCTTG 58.854 52.381 0.00 0.00 39.63 4.01
4913 17579 1.768870 ACAGACACCTTGTAGGCTTGT 59.231 47.619 0.00 0.00 39.63 3.16
4924 17590 2.224426 TGTAGGCTTGTACCCACAACTG 60.224 50.000 0.00 0.00 39.75 3.16
4929 17595 2.812011 GCTTGTACCCACAACTGTAAGG 59.188 50.000 0.00 0.00 39.75 2.69
4964 17646 0.716108 GCACTCATCGAAGACAACCG 59.284 55.000 0.00 0.00 42.51 4.44
4966 17648 0.603569 ACTCATCGAAGACAACCGCT 59.396 50.000 0.00 0.00 42.51 5.52
4967 17649 1.272781 CTCATCGAAGACAACCGCTC 58.727 55.000 0.00 0.00 42.51 5.03
4968 17650 0.456142 TCATCGAAGACAACCGCTCG 60.456 55.000 0.00 0.00 42.51 5.03
4992 17686 6.436843 ACGCGAGATTTCTTCCATTAATTT 57.563 33.333 15.93 0.00 0.00 1.82
5017 17711 6.150976 TGCATCAAATAGGGTGTAAGAAACAG 59.849 38.462 0.00 0.00 39.29 3.16
5029 17723 6.553524 GTGTAAGAAACAGCTAGATAGTCGT 58.446 40.000 0.00 0.00 39.29 4.34
5032 17726 8.900781 TGTAAGAAACAGCTAGATAGTCGTATT 58.099 33.333 0.00 0.00 33.01 1.89
5034 17728 6.740110 AGAAACAGCTAGATAGTCGTATTGG 58.260 40.000 0.00 0.00 0.00 3.16
5051 17745 0.320421 TGGTTAGAGCACGCACCTTC 60.320 55.000 6.40 0.00 0.00 3.46
5204 17937 1.064166 CCACCATCATTTGCTCCTCCT 60.064 52.381 0.00 0.00 0.00 3.69
5205 17938 2.295885 CACCATCATTTGCTCCTCCTC 58.704 52.381 0.00 0.00 0.00 3.71
5206 17939 1.213926 ACCATCATTTGCTCCTCCTCC 59.786 52.381 0.00 0.00 0.00 4.30
5207 17940 1.493871 CCATCATTTGCTCCTCCTCCT 59.506 52.381 0.00 0.00 0.00 3.69
5208 17941 2.486907 CCATCATTTGCTCCTCCTCCTC 60.487 54.545 0.00 0.00 0.00 3.71
5209 17942 1.207791 TCATTTGCTCCTCCTCCTCC 58.792 55.000 0.00 0.00 0.00 4.30
5210 17943 1.211456 CATTTGCTCCTCCTCCTCCT 58.789 55.000 0.00 0.00 0.00 3.69
5211 17944 1.140652 CATTTGCTCCTCCTCCTCCTC 59.859 57.143 0.00 0.00 0.00 3.71
5212 17945 0.618968 TTTGCTCCTCCTCCTCCTCC 60.619 60.000 0.00 0.00 0.00 4.30
5280 18016 2.125912 CAGACCAGCTCGTTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
5357 18098 2.123726 CCAGGGTTATGGGCCTGC 60.124 66.667 4.53 0.00 36.64 4.85
5371 18112 2.047844 CTGCCACTCCACGACAGG 60.048 66.667 0.00 0.00 0.00 4.00
5393 18134 9.384764 ACAGGTCTCTATCTGTTTAATTTAAGC 57.615 33.333 0.00 0.00 45.03 3.09
5395 18136 8.773216 AGGTCTCTATCTGTTTAATTTAAGCCT 58.227 33.333 1.23 0.00 0.00 4.58
5396 18137 9.397280 GGTCTCTATCTGTTTAATTTAAGCCTT 57.603 33.333 1.23 0.00 0.00 4.35
5468 18209 3.726291 ACAGCACAAATGTTTACACCC 57.274 42.857 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.518112 TGCAAGCGCCAAGGAACA 60.518 55.556 2.29 0.00 37.32 3.18
1 2 2.050077 GTGCAAGCGCCAAGGAAC 60.050 61.111 2.29 0.00 37.32 3.62
4 5 3.741476 GGAGTGCAAGCGCCAAGG 61.741 66.667 2.29 0.00 37.32 3.61
5 6 2.670934 AGGAGTGCAAGCGCCAAG 60.671 61.111 2.29 0.00 37.32 3.61
6 7 2.669569 GAGGAGTGCAAGCGCCAA 60.670 61.111 2.29 0.00 37.32 4.52
7 8 4.704833 GGAGGAGTGCAAGCGCCA 62.705 66.667 2.29 0.00 37.32 5.69
8 9 4.400961 AGGAGGAGTGCAAGCGCC 62.401 66.667 2.29 0.00 37.32 6.53
9 10 2.817396 GAGGAGGAGTGCAAGCGC 60.817 66.667 0.00 0.00 39.24 5.92
10 11 2.507992 CGAGGAGGAGTGCAAGCG 60.508 66.667 0.00 0.00 0.00 4.68
11 12 1.446966 GACGAGGAGGAGTGCAAGC 60.447 63.158 0.00 0.00 0.00 4.01
12 13 0.534412 ATGACGAGGAGGAGTGCAAG 59.466 55.000 0.00 0.00 0.00 4.01
13 14 0.532573 GATGACGAGGAGGAGTGCAA 59.467 55.000 0.00 0.00 0.00 4.08
14 15 1.323271 GGATGACGAGGAGGAGTGCA 61.323 60.000 0.00 0.00 0.00 4.57
15 16 1.439644 GGATGACGAGGAGGAGTGC 59.560 63.158 0.00 0.00 0.00 4.40
27 28 0.802607 GTCGGAGCTTCACGGATGAC 60.803 60.000 0.00 0.00 33.38 3.06
28 29 1.248101 TGTCGGAGCTTCACGGATGA 61.248 55.000 0.00 0.00 0.00 2.92
29 30 0.389817 TTGTCGGAGCTTCACGGATG 60.390 55.000 0.00 0.00 0.00 3.51
30 31 0.537188 ATTGTCGGAGCTTCACGGAT 59.463 50.000 0.00 0.00 0.00 4.18
31 32 1.135199 GTATTGTCGGAGCTTCACGGA 60.135 52.381 0.00 0.00 0.00 4.69
32 33 1.278238 GTATTGTCGGAGCTTCACGG 58.722 55.000 0.00 0.00 0.00 4.94
33 34 1.135083 AGGTATTGTCGGAGCTTCACG 60.135 52.381 0.00 0.00 0.00 4.35
34 35 2.674796 AGGTATTGTCGGAGCTTCAC 57.325 50.000 0.00 0.00 0.00 3.18
35 36 3.492656 GCATAGGTATTGTCGGAGCTTCA 60.493 47.826 0.00 0.00 0.00 3.02
36 37 3.060602 GCATAGGTATTGTCGGAGCTTC 58.939 50.000 0.00 0.00 0.00 3.86
37 38 2.434336 TGCATAGGTATTGTCGGAGCTT 59.566 45.455 0.00 0.00 0.00 3.74
38 39 2.039418 TGCATAGGTATTGTCGGAGCT 58.961 47.619 0.00 0.00 0.00 4.09
39 40 2.526304 TGCATAGGTATTGTCGGAGC 57.474 50.000 0.00 0.00 0.00 4.70
40 41 2.738846 GCATGCATAGGTATTGTCGGAG 59.261 50.000 14.21 0.00 0.00 4.63
41 42 2.103941 TGCATGCATAGGTATTGTCGGA 59.896 45.455 18.46 0.00 0.00 4.55
42 43 2.224079 GTGCATGCATAGGTATTGTCGG 59.776 50.000 25.64 0.00 0.00 4.79
43 44 2.871633 TGTGCATGCATAGGTATTGTCG 59.128 45.455 25.64 0.00 0.00 4.35
44 45 3.303329 CGTGTGCATGCATAGGTATTGTC 60.303 47.826 25.64 7.17 0.00 3.18
45 46 2.613595 CGTGTGCATGCATAGGTATTGT 59.386 45.455 25.64 0.00 0.00 2.71
46 47 2.871633 TCGTGTGCATGCATAGGTATTG 59.128 45.455 28.58 12.96 0.00 1.90
47 48 3.133691 CTCGTGTGCATGCATAGGTATT 58.866 45.455 28.58 0.00 0.00 1.89
48 49 2.103094 ACTCGTGTGCATGCATAGGTAT 59.897 45.455 28.58 18.61 0.00 2.73
49 50 1.480545 ACTCGTGTGCATGCATAGGTA 59.519 47.619 28.58 17.88 0.00 3.08
50 51 0.250234 ACTCGTGTGCATGCATAGGT 59.750 50.000 28.58 19.41 0.00 3.08
51 52 0.654160 CACTCGTGTGCATGCATAGG 59.346 55.000 25.64 25.62 37.38 2.57
52 53 0.654160 CCACTCGTGTGCATGCATAG 59.346 55.000 25.64 19.76 42.54 2.23
53 54 0.248843 TCCACTCGTGTGCATGCATA 59.751 50.000 25.64 19.63 42.54 3.14
54 55 1.003476 TCCACTCGTGTGCATGCAT 60.003 52.632 25.64 2.98 42.54 3.96
55 56 1.668793 CTCCACTCGTGTGCATGCA 60.669 57.895 18.46 18.46 42.54 3.96
56 57 1.669115 ACTCCACTCGTGTGCATGC 60.669 57.895 11.82 11.82 42.54 4.06
57 58 0.601046 ACACTCCACTCGTGTGCATG 60.601 55.000 12.06 11.15 43.44 4.06
58 59 0.319900 GACACTCCACTCGTGTGCAT 60.320 55.000 12.06 0.00 44.95 3.96
59 60 1.067416 GACACTCCACTCGTGTGCA 59.933 57.895 12.06 0.00 44.95 4.57
60 61 0.529773 TTGACACTCCACTCGTGTGC 60.530 55.000 12.06 0.00 44.95 4.57
61 62 1.202417 ACTTGACACTCCACTCGTGTG 60.202 52.381 10.61 10.61 44.95 3.82
63 64 2.293677 ACTACTTGACACTCCACTCGTG 59.706 50.000 0.00 0.00 38.32 4.35
64 65 2.584236 ACTACTTGACACTCCACTCGT 58.416 47.619 0.00 0.00 0.00 4.18
65 66 4.966965 ATACTACTTGACACTCCACTCG 57.033 45.455 0.00 0.00 0.00 4.18
66 67 5.651139 TGGTATACTACTTGACACTCCACTC 59.349 44.000 2.25 0.00 0.00 3.51
67 68 5.577100 TGGTATACTACTTGACACTCCACT 58.423 41.667 2.25 0.00 0.00 4.00
68 69 5.909621 TGGTATACTACTTGACACTCCAC 57.090 43.478 2.25 0.00 0.00 4.02
69 70 5.597182 GGATGGTATACTACTTGACACTCCA 59.403 44.000 2.25 0.00 0.00 3.86
70 71 5.834204 AGGATGGTATACTACTTGACACTCC 59.166 44.000 2.25 0.00 0.00 3.85
71 72 6.293516 CGAGGATGGTATACTACTTGACACTC 60.294 46.154 2.25 0.00 0.00 3.51
72 73 5.531659 CGAGGATGGTATACTACTTGACACT 59.468 44.000 2.25 0.00 0.00 3.55
73 74 5.530171 TCGAGGATGGTATACTACTTGACAC 59.470 44.000 2.25 0.00 0.00 3.67
74 75 5.687780 TCGAGGATGGTATACTACTTGACA 58.312 41.667 2.25 0.00 0.00 3.58
75 76 6.294065 CCTTCGAGGATGGTATACTACTTGAC 60.294 46.154 2.25 0.00 37.67 3.18
76 77 5.768662 CCTTCGAGGATGGTATACTACTTGA 59.231 44.000 2.25 0.00 37.67 3.02
77 78 5.047943 CCCTTCGAGGATGGTATACTACTTG 60.048 48.000 2.25 0.00 37.67 3.16
78 79 5.078256 CCCTTCGAGGATGGTATACTACTT 58.922 45.833 2.25 0.00 37.67 2.24
79 80 4.508763 CCCCTTCGAGGATGGTATACTACT 60.509 50.000 2.25 0.00 37.67 2.57
80 81 3.762823 CCCCTTCGAGGATGGTATACTAC 59.237 52.174 2.25 0.00 37.67 2.73
81 82 3.400322 ACCCCTTCGAGGATGGTATACTA 59.600 47.826 6.88 0.00 37.67 1.82
82 83 2.179424 ACCCCTTCGAGGATGGTATACT 59.821 50.000 6.88 0.00 37.67 2.12
83 84 2.561858 GACCCCTTCGAGGATGGTATAC 59.438 54.545 8.36 0.00 37.67 1.47
84 85 2.178325 TGACCCCTTCGAGGATGGTATA 59.822 50.000 8.36 0.40 37.67 1.47
85 86 1.062428 TGACCCCTTCGAGGATGGTAT 60.062 52.381 8.36 0.00 37.67 2.73
86 87 0.337082 TGACCCCTTCGAGGATGGTA 59.663 55.000 8.36 0.00 37.67 3.25
87 88 0.546747 TTGACCCCTTCGAGGATGGT 60.547 55.000 8.16 8.16 37.67 3.55
88 89 0.179000 CTTGACCCCTTCGAGGATGG 59.821 60.000 0.00 0.00 37.67 3.51
89 90 0.462759 GCTTGACCCCTTCGAGGATG 60.463 60.000 0.00 0.00 37.67 3.51
90 91 1.908483 GCTTGACCCCTTCGAGGAT 59.092 57.895 0.00 0.00 37.67 3.24
91 92 2.646175 CGCTTGACCCCTTCGAGGA 61.646 63.158 0.00 0.00 37.67 3.71
92 93 2.125512 CGCTTGACCCCTTCGAGG 60.126 66.667 0.00 0.00 36.33 4.63
93 94 1.153745 CTCGCTTGACCCCTTCGAG 60.154 63.158 0.00 0.00 40.22 4.04
94 95 2.970639 CTCGCTTGACCCCTTCGA 59.029 61.111 0.00 0.00 0.00 3.71
95 96 2.815647 GCTCGCTTGACCCCTTCG 60.816 66.667 0.00 0.00 0.00 3.79
96 97 2.035442 GTGCTCGCTTGACCCCTTC 61.035 63.158 0.00 0.00 0.00 3.46
97 98 2.032681 GTGCTCGCTTGACCCCTT 59.967 61.111 0.00 0.00 0.00 3.95
98 99 4.379243 CGTGCTCGCTTGACCCCT 62.379 66.667 0.00 0.00 0.00 4.79
101 102 2.775032 TTACCCGTGCTCGCTTGACC 62.775 60.000 1.89 0.00 35.54 4.02
102 103 0.947180 TTTACCCGTGCTCGCTTGAC 60.947 55.000 1.89 0.00 35.54 3.18
103 104 0.669318 CTTTACCCGTGCTCGCTTGA 60.669 55.000 1.89 0.00 35.54 3.02
104 105 1.635663 CCTTTACCCGTGCTCGCTTG 61.636 60.000 1.89 0.00 35.54 4.01
105 106 1.375523 CCTTTACCCGTGCTCGCTT 60.376 57.895 1.89 0.00 35.54 4.68
106 107 2.227089 CTCCTTTACCCGTGCTCGCT 62.227 60.000 1.89 0.00 35.54 4.93
107 108 1.810030 CTCCTTTACCCGTGCTCGC 60.810 63.158 1.89 0.00 35.54 5.03
108 109 0.460311 ATCTCCTTTACCCGTGCTCG 59.540 55.000 0.14 0.14 0.00 5.03
109 110 1.480954 TCATCTCCTTTACCCGTGCTC 59.519 52.381 0.00 0.00 0.00 4.26
110 111 1.568504 TCATCTCCTTTACCCGTGCT 58.431 50.000 0.00 0.00 0.00 4.40
111 112 2.622064 ATCATCTCCTTTACCCGTGC 57.378 50.000 0.00 0.00 0.00 5.34
112 113 3.871594 GTGAATCATCTCCTTTACCCGTG 59.128 47.826 0.00 0.00 0.00 4.94
113 114 3.775316 AGTGAATCATCTCCTTTACCCGT 59.225 43.478 0.00 0.00 0.00 5.28
114 115 4.408182 AGTGAATCATCTCCTTTACCCG 57.592 45.455 0.00 0.00 0.00 5.28
115 116 6.434340 ACAAAAGTGAATCATCTCCTTTACCC 59.566 38.462 0.00 0.00 31.56 3.69
116 117 7.040409 ACACAAAAGTGAATCATCTCCTTTACC 60.040 37.037 2.22 0.00 31.56 2.85
117 118 7.875971 ACACAAAAGTGAATCATCTCCTTTAC 58.124 34.615 2.22 0.00 31.56 2.01
118 119 9.739276 ATACACAAAAGTGAATCATCTCCTTTA 57.261 29.630 2.22 0.00 31.56 1.85
119 120 6.966534 ACACAAAAGTGAATCATCTCCTTT 57.033 33.333 2.22 0.00 32.46 3.11
120 121 7.667219 ACATACACAAAAGTGAATCATCTCCTT 59.333 33.333 2.22 0.00 0.00 3.36
121 122 7.120285 CACATACACAAAAGTGAATCATCTCCT 59.880 37.037 2.22 0.00 33.99 3.69
122 123 7.119699 TCACATACACAAAAGTGAATCATCTCC 59.880 37.037 2.22 0.00 37.99 3.71
123 124 8.032952 TCACATACACAAAAGTGAATCATCTC 57.967 34.615 2.22 0.00 37.99 2.75
124 125 7.984422 TCACATACACAAAAGTGAATCATCT 57.016 32.000 2.22 0.00 37.99 2.90
125 126 8.292448 ACTTCACATACACAAAAGTGAATCATC 58.708 33.333 7.22 0.00 46.26 2.92
126 127 8.169977 ACTTCACATACACAAAAGTGAATCAT 57.830 30.769 7.22 0.00 46.26 2.45
127 128 7.566760 ACTTCACATACACAAAAGTGAATCA 57.433 32.000 7.22 0.00 46.26 2.57
128 129 8.988934 TCTACTTCACATACACAAAAGTGAATC 58.011 33.333 7.22 0.00 46.26 2.52
129 130 8.902540 TCTACTTCACATACACAAAAGTGAAT 57.097 30.769 7.22 2.25 46.26 2.57
130 131 8.773645 CATCTACTTCACATACACAAAAGTGAA 58.226 33.333 2.22 0.00 45.57 3.18
131 132 7.931407 ACATCTACTTCACATACACAAAAGTGA 59.069 33.333 2.22 0.00 39.06 3.41
132 133 8.087982 ACATCTACTTCACATACACAAAAGTG 57.912 34.615 0.00 0.00 32.71 3.16
133 134 7.116376 CGACATCTACTTCACATACACAAAAGT 59.884 37.037 0.00 0.00 34.70 2.66
134 135 7.448228 CGACATCTACTTCACATACACAAAAG 58.552 38.462 0.00 0.00 0.00 2.27
135 136 6.128661 GCGACATCTACTTCACATACACAAAA 60.129 38.462 0.00 0.00 0.00 2.44
136 137 5.347635 GCGACATCTACTTCACATACACAAA 59.652 40.000 0.00 0.00 0.00 2.83
137 138 4.862574 GCGACATCTACTTCACATACACAA 59.137 41.667 0.00 0.00 0.00 3.33
138 139 4.082463 TGCGACATCTACTTCACATACACA 60.082 41.667 0.00 0.00 0.00 3.72
139 140 4.265556 GTGCGACATCTACTTCACATACAC 59.734 45.833 0.00 0.00 0.00 2.90
140 141 4.421058 GTGCGACATCTACTTCACATACA 58.579 43.478 0.00 0.00 0.00 2.29
141 142 3.482472 CGTGCGACATCTACTTCACATAC 59.518 47.826 0.00 0.00 0.00 2.39
142 143 3.128068 ACGTGCGACATCTACTTCACATA 59.872 43.478 0.00 0.00 0.00 2.29
143 144 2.094700 ACGTGCGACATCTACTTCACAT 60.095 45.455 0.00 0.00 0.00 3.21
144 145 1.268625 ACGTGCGACATCTACTTCACA 59.731 47.619 0.00 0.00 0.00 3.58
145 146 1.649171 CACGTGCGACATCTACTTCAC 59.351 52.381 0.82 0.00 0.00 3.18
146 147 1.268625 ACACGTGCGACATCTACTTCA 59.731 47.619 17.22 0.00 0.00 3.02
147 148 1.912110 GACACGTGCGACATCTACTTC 59.088 52.381 17.22 0.00 0.00 3.01
148 149 1.268625 TGACACGTGCGACATCTACTT 59.731 47.619 17.22 0.00 0.00 2.24
149 150 0.879090 TGACACGTGCGACATCTACT 59.121 50.000 17.22 0.00 0.00 2.57
150 151 0.982673 GTGACACGTGCGACATCTAC 59.017 55.000 17.22 3.14 0.00 2.59
151 152 0.879090 AGTGACACGTGCGACATCTA 59.121 50.000 17.22 0.00 0.00 1.98
152 153 0.032130 AAGTGACACGTGCGACATCT 59.968 50.000 17.22 10.38 0.00 2.90
153 154 0.161658 CAAGTGACACGTGCGACATC 59.838 55.000 17.22 5.76 0.00 3.06
154 155 1.831389 GCAAGTGACACGTGCGACAT 61.831 55.000 26.66 2.18 43.01 3.06
155 156 2.521771 GCAAGTGACACGTGCGACA 61.522 57.895 26.66 10.95 43.01 4.35
156 157 2.245532 GCAAGTGACACGTGCGAC 59.754 61.111 26.66 12.48 43.01 5.19
160 161 0.110688 CATTCGGCAAGTGACACGTG 60.111 55.000 15.48 15.48 0.00 4.49
161 162 0.249699 TCATTCGGCAAGTGACACGT 60.250 50.000 0.00 0.00 0.00 4.49
162 163 0.865111 TTCATTCGGCAAGTGACACG 59.135 50.000 0.00 0.00 0.00 4.49
163 164 1.873591 AGTTCATTCGGCAAGTGACAC 59.126 47.619 0.00 0.00 0.00 3.67
164 165 2.143122 GAGTTCATTCGGCAAGTGACA 58.857 47.619 0.00 0.00 0.00 3.58
165 166 2.417719 AGAGTTCATTCGGCAAGTGAC 58.582 47.619 0.00 0.00 0.00 3.67
166 167 2.807967 CAAGAGTTCATTCGGCAAGTGA 59.192 45.455 0.00 0.00 0.00 3.41
167 168 2.807967 TCAAGAGTTCATTCGGCAAGTG 59.192 45.455 0.00 0.00 0.00 3.16
168 169 2.808543 GTCAAGAGTTCATTCGGCAAGT 59.191 45.455 0.00 0.00 0.00 3.16
169 170 2.807967 TGTCAAGAGTTCATTCGGCAAG 59.192 45.455 0.00 0.00 0.00 4.01
170 171 2.844946 TGTCAAGAGTTCATTCGGCAA 58.155 42.857 0.00 0.00 0.00 4.52
171 172 2.542020 TGTCAAGAGTTCATTCGGCA 57.458 45.000 0.00 0.00 0.00 5.69
172 173 2.096496 CCATGTCAAGAGTTCATTCGGC 59.904 50.000 0.00 0.00 0.00 5.54
173 174 3.125829 CACCATGTCAAGAGTTCATTCGG 59.874 47.826 0.00 0.00 0.00 4.30
174 175 3.996363 TCACCATGTCAAGAGTTCATTCG 59.004 43.478 0.00 0.00 0.00 3.34
175 176 5.413833 ACATCACCATGTCAAGAGTTCATTC 59.586 40.000 0.00 0.00 39.15 2.67
176 177 5.319453 ACATCACCATGTCAAGAGTTCATT 58.681 37.500 0.00 0.00 39.15 2.57
177 178 4.914983 ACATCACCATGTCAAGAGTTCAT 58.085 39.130 0.00 0.00 39.15 2.57
178 179 4.356405 ACATCACCATGTCAAGAGTTCA 57.644 40.909 0.00 0.00 39.15 3.18
188 189 1.860641 TCCTACGGACATCACCATGT 58.139 50.000 0.00 0.00 46.64 3.21
189 190 2.759191 CATCCTACGGACATCACCATG 58.241 52.381 0.00 0.00 32.98 3.66
190 191 1.070758 GCATCCTACGGACATCACCAT 59.929 52.381 0.00 0.00 32.98 3.55
191 192 0.464036 GCATCCTACGGACATCACCA 59.536 55.000 0.00 0.00 32.98 4.17
192 193 0.753262 AGCATCCTACGGACATCACC 59.247 55.000 0.00 0.00 32.98 4.02
193 194 2.141535 GAGCATCCTACGGACATCAC 57.858 55.000 0.00 0.00 32.98 3.06
210 211 2.749076 TGAAAAGGATGTTGATGCGGAG 59.251 45.455 0.00 0.00 0.00 4.63
211 212 2.749076 CTGAAAAGGATGTTGATGCGGA 59.251 45.455 0.00 0.00 0.00 5.54
212 213 2.159338 CCTGAAAAGGATGTTGATGCGG 60.159 50.000 0.00 0.00 0.00 5.69
213 214 2.489329 ACCTGAAAAGGATGTTGATGCG 59.511 45.455 0.00 0.00 0.00 4.73
214 215 3.507233 TCACCTGAAAAGGATGTTGATGC 59.493 43.478 0.00 0.00 0.00 3.91
215 216 5.909621 ATCACCTGAAAAGGATGTTGATG 57.090 39.130 0.00 0.00 0.00 3.07
216 217 5.586243 CGTATCACCTGAAAAGGATGTTGAT 59.414 40.000 0.00 0.42 0.00 2.57
217 218 4.935205 CGTATCACCTGAAAAGGATGTTGA 59.065 41.667 0.00 0.00 0.00 3.18
218 219 4.437390 GCGTATCACCTGAAAAGGATGTTG 60.437 45.833 0.00 0.00 0.00 3.33
240 241 1.069364 GTGCAGCTGTCTGAAAAGAGC 60.069 52.381 16.64 0.00 42.95 4.09
255 256 2.582728 TTTTTGGCAGTCTTGTGCAG 57.417 45.000 0.00 0.00 45.93 4.41
276 277 5.279657 CCCTAGCTTTGCAAGAAAAAGGAAT 60.280 40.000 14.82 0.00 35.57 3.01
277 278 4.039124 CCCTAGCTTTGCAAGAAAAAGGAA 59.961 41.667 14.82 0.00 35.57 3.36
322 323 3.129113 TGCCAGCTATGCATTTAAGTGTG 59.871 43.478 3.54 0.00 32.85 3.82
352 353 0.664466 GGCCTTGCGCTTGTTTCTTC 60.664 55.000 9.73 0.00 37.74 2.87
472 543 4.869215 TGCATGTTTGACCATGTAAACTG 58.131 39.130 14.53 11.86 43.33 3.16
538 626 8.400947 ACACATATGAGATTGCACTTAAATGTC 58.599 33.333 10.38 0.00 0.00 3.06
893 1003 4.315588 GCAGAGCCAGTGAAGCAT 57.684 55.556 0.00 0.00 0.00 3.79
991 1104 1.898863 AGGGGATCCATTGCTGTAGT 58.101 50.000 15.23 0.00 34.83 2.73
1018 1134 4.826733 ACAAACAAGGCAGATGATTGTGTA 59.173 37.500 10.96 0.00 40.74 2.90
1152 1268 2.191400 CTGGACAGGGAGAAGAATCCA 58.809 52.381 0.00 0.00 41.52 3.41
1215 1331 4.932799 CACACAATGTTGTCTTCGGGTATA 59.067 41.667 0.00 0.00 39.91 1.47
1635 1751 3.849951 CGCCGGTAGGGTGCTGAT 61.850 66.667 1.90 0.00 39.96 2.90
1644 1760 1.030457 ATACCAGACTTCGCCGGTAG 58.970 55.000 1.90 0.56 37.42 3.18
1817 1939 6.146347 GCTATTCCAGATTCGTGTCTTTATCC 59.854 42.308 0.00 0.00 0.00 2.59
2160 2282 2.466846 GTGTAAGCATACGCCGTACAT 58.533 47.619 0.00 0.00 39.80 2.29
2297 5272 6.485648 ACAGTAAACTTTACCACTCAATCCAC 59.514 38.462 7.89 0.00 0.00 4.02
2442 5423 9.614792 GTTTACCCTCTAATATTTGTCTGTCAT 57.385 33.333 0.00 0.00 0.00 3.06
2482 5465 6.336566 CGAGATTATAGGGAGTTCCATCATG 58.663 44.000 0.00 0.00 38.24 3.07
2499 5482 9.515020 GTTCCATCATTTATTTTTGCGAGATTA 57.485 29.630 0.00 0.00 0.00 1.75
2500 5483 8.253113 AGTTCCATCATTTATTTTTGCGAGATT 58.747 29.630 0.00 0.00 0.00 2.40
2501 5484 7.775120 AGTTCCATCATTTATTTTTGCGAGAT 58.225 30.769 0.00 0.00 0.00 2.75
2503 5486 6.473455 GGAGTTCCATCATTTATTTTTGCGAG 59.527 38.462 0.00 0.00 35.64 5.03
2504 5487 6.329496 GGAGTTCCATCATTTATTTTTGCGA 58.671 36.000 0.00 0.00 35.64 5.10
2506 5489 6.643388 AGGGAGTTCCATCATTTATTTTTGC 58.357 36.000 0.00 0.00 38.24 3.68
2512 5495 8.830741 CCTTCTATAGGGAGTTCCATCATTTAT 58.169 37.037 0.00 0.00 40.67 1.40
2513 5496 8.016652 TCCTTCTATAGGGAGTTCCATCATTTA 58.983 37.037 0.00 0.00 44.86 1.40
2516 5499 5.982391 TCCTTCTATAGGGAGTTCCATCAT 58.018 41.667 0.00 0.00 44.86 2.45
2517 5500 5.418692 TCCTTCTATAGGGAGTTCCATCA 57.581 43.478 0.00 0.00 44.86 3.07
2518 5501 6.464607 GGTTTCCTTCTATAGGGAGTTCCATC 60.465 46.154 0.00 0.00 44.86 3.51
2519 5502 5.369993 GGTTTCCTTCTATAGGGAGTTCCAT 59.630 44.000 0.00 0.00 44.86 3.41
2522 5505 6.563037 AAGGTTTCCTTCTATAGGGAGTTC 57.437 41.667 0.00 0.00 40.17 3.01
2607 6446 3.222603 GTTGAACTGGATGGAGTGGTTT 58.777 45.455 0.00 0.00 0.00 3.27
2702 6736 5.907866 TCTCACATGAACAATTGCATCAT 57.092 34.783 17.27 17.27 34.22 2.45
2743 6780 3.007831 TGAACTACATGCACATGGTCTCA 59.992 43.478 14.73 8.64 42.91 3.27
2749 6786 6.426980 ACAAGTATGAACTACATGCACATG 57.573 37.500 9.06 9.06 42.58 3.21
2814 6851 7.443879 TCAGTCTGTAAGCAATCACAATTACAA 59.556 33.333 0.00 0.00 37.60 2.41
2852 6890 3.017265 ACATTGCTCTTCCGCTTTTTG 57.983 42.857 0.00 0.00 0.00 2.44
2934 6972 1.094073 CCTCCAAAGCTGCAGATCCG 61.094 60.000 20.43 5.68 0.00 4.18
2970 7008 3.876914 TGATGGAAATACACCGAGAATGC 59.123 43.478 0.00 0.00 0.00 3.56
3009 7049 9.234827 CCACATAGAAATATGGAATAGCATTGA 57.765 33.333 0.78 0.00 33.80 2.57
3035 7075 6.468000 GCAAACGTTATAGCAAAGGAACATAC 59.532 38.462 0.00 0.00 0.00 2.39
3047 7087 5.455525 GGAACATTGATGCAAACGTTATAGC 59.544 40.000 0.00 7.30 0.00 2.97
3118 7159 5.003804 TCAATAGAAGTGCTTGAAGTTCCC 58.996 41.667 0.00 0.00 31.00 3.97
3303 7344 6.544197 TGCATACTTTTAGGTGAAACAAGACA 59.456 34.615 0.00 0.00 39.98 3.41
3313 7354 4.759693 TGGACACTTGCATACTTTTAGGTG 59.240 41.667 0.00 0.00 0.00 4.00
3362 7403 5.335191 CCTTACTAAGCCTTTTCACAGCAAG 60.335 44.000 0.00 0.00 0.00 4.01
3784 7845 4.629200 CAGATATCTTAGGGCTCATTTCGC 59.371 45.833 1.33 0.00 0.00 4.70
4230 8525 0.251354 AGCAGCTGTCCACAATCGAT 59.749 50.000 16.64 0.00 0.00 3.59
4233 8528 0.801251 GTGAGCAGCTGTCCACAATC 59.199 55.000 25.34 11.07 0.00 2.67
4371 8670 0.111253 ACACAGGCTCTTTTGGAGGG 59.889 55.000 0.00 0.00 42.08 4.30
4435 8734 8.801913 GCTCATGTTATTTTTAGAATTCACAGC 58.198 33.333 8.44 0.00 0.00 4.40
4462 15828 2.159085 AGCGTCCCTCTATTGCTGTAAC 60.159 50.000 0.00 0.00 33.99 2.50
4503 15884 3.186409 AGCATACAGTTGTACAAAGTGCG 59.814 43.478 19.67 13.31 36.90 5.34
4532 15913 7.255277 GCTCTTCAAGACAAATACCAGTTTCTT 60.255 37.037 0.00 0.00 0.00 2.52
4533 15914 6.205658 GCTCTTCAAGACAAATACCAGTTTCT 59.794 38.462 0.00 0.00 0.00 2.52
4576 15971 6.432162 CCTGGGGTTGAGATACATTATTCATG 59.568 42.308 0.00 0.00 39.07 3.07
4579 15974 6.187727 TCCTGGGGTTGAGATACATTATTC 57.812 41.667 0.00 0.00 0.00 1.75
4590 15985 4.101448 CGGGCTCCTGGGGTTGAG 62.101 72.222 0.00 0.00 0.00 3.02
4607 16002 0.610232 AGACCTGTCCCATTTGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
4620 16019 8.669243 GGTCTTTAATAAGAACAATGAGACCTG 58.331 37.037 10.56 0.00 45.60 4.00
4674 16074 5.830912 TCAGTTGGTTAACTTGCATTCTTG 58.169 37.500 5.42 0.00 44.57 3.02
4680 16080 7.721402 ACATAATTTCAGTTGGTTAACTTGCA 58.279 30.769 5.42 0.00 44.57 4.08
4702 16106 8.612619 CAACTATCCTTTTTCGTAAGCATACAT 58.387 33.333 0.00 0.00 37.18 2.29
4740 16307 9.299963 GACATACTGCATGCAAAATGTATAAAA 57.700 29.630 31.89 11.78 38.29 1.52
4744 16838 6.500910 CAGACATACTGCATGCAAAATGTAT 58.499 36.000 31.89 28.58 39.86 2.29
4773 16873 0.940126 CTGCCTGCGCTAAATACTGG 59.060 55.000 9.73 0.00 35.36 4.00
4780 16880 2.034879 GTGCTTCTGCCTGCGCTAA 61.035 57.895 9.73 0.00 38.71 3.09
4781 16881 2.434884 GTGCTTCTGCCTGCGCTA 60.435 61.111 9.73 0.00 38.71 4.26
4785 16885 0.107508 TCTATGGTGCTTCTGCCTGC 60.108 55.000 0.00 0.00 38.71 4.85
4786 16886 1.474677 CCTCTATGGTGCTTCTGCCTG 60.475 57.143 0.00 0.00 38.71 4.85
4787 16887 0.835941 CCTCTATGGTGCTTCTGCCT 59.164 55.000 0.00 0.00 38.71 4.75
4788 16888 3.393472 CCTCTATGGTGCTTCTGCC 57.607 57.895 0.00 0.00 38.71 4.85
4812 17469 4.043435 AGCAGTTCTCTTTTATCCCTTGGT 59.957 41.667 0.00 0.00 0.00 3.67
4813 17473 4.397417 CAGCAGTTCTCTTTTATCCCTTGG 59.603 45.833 0.00 0.00 0.00 3.61
4828 17488 6.035843 TCAGTTTTTCACAAATCAGCAGTTC 58.964 36.000 0.00 0.00 0.00 3.01
4880 17542 0.251297 TGTCTGTGGAAATGCCTGGG 60.251 55.000 0.00 0.00 37.63 4.45
4881 17547 0.883833 GTGTCTGTGGAAATGCCTGG 59.116 55.000 0.00 0.00 37.63 4.45
4896 17562 2.614734 GGGTACAAGCCTACAAGGTGTC 60.615 54.545 0.00 0.00 37.80 3.67
4906 17572 0.843984 ACAGTTGTGGGTACAAGCCT 59.156 50.000 0.00 0.00 46.75 4.58
4907 17573 2.554370 TACAGTTGTGGGTACAAGCC 57.446 50.000 0.00 0.00 46.75 4.35
4908 17574 2.812011 CCTTACAGTTGTGGGTACAAGC 59.188 50.000 0.00 0.00 46.75 4.01
4909 17575 4.062991 GACCTTACAGTTGTGGGTACAAG 58.937 47.826 10.28 0.00 46.75 3.16
4910 17576 3.493002 CGACCTTACAGTTGTGGGTACAA 60.493 47.826 10.28 0.00 44.17 2.41
4911 17577 2.036217 CGACCTTACAGTTGTGGGTACA 59.964 50.000 10.28 0.00 36.27 2.90
4912 17578 2.680577 CGACCTTACAGTTGTGGGTAC 58.319 52.381 10.28 0.00 36.27 3.34
4913 17579 1.001181 GCGACCTTACAGTTGTGGGTA 59.999 52.381 10.28 0.00 36.27 3.69
4924 17590 1.805945 CCGTGAGCAGCGACCTTAC 60.806 63.158 0.00 0.00 0.00 2.34
4945 17612 0.716108 CGGTTGTCTTCGATGAGTGC 59.284 55.000 0.47 0.00 0.00 4.40
4966 17648 0.524414 TGGAAGAAATCTCGCGTCGA 59.476 50.000 5.77 4.46 0.00 4.20
4967 17649 1.560923 ATGGAAGAAATCTCGCGTCG 58.439 50.000 5.77 0.00 0.00 5.12
4968 17650 5.659048 ATTAATGGAAGAAATCTCGCGTC 57.341 39.130 5.77 0.00 0.00 5.19
4992 17686 6.007076 TGTTTCTTACACCCTATTTGATGCA 58.993 36.000 0.00 0.00 0.00 3.96
5017 17711 6.072618 TGCTCTAACCAATACGACTATCTAGC 60.073 42.308 0.00 0.00 0.00 3.42
5027 17721 1.323534 GTGCGTGCTCTAACCAATACG 59.676 52.381 0.00 0.00 34.93 3.06
5029 17723 1.553248 AGGTGCGTGCTCTAACCAATA 59.447 47.619 8.79 0.00 35.01 1.90
5032 17726 0.320421 GAAGGTGCGTGCTCTAACCA 60.320 55.000 8.79 0.00 35.01 3.67
5034 17728 0.388134 TCGAAGGTGCGTGCTCTAAC 60.388 55.000 0.00 0.00 0.00 2.34
5155 17877 0.835941 CTTCCTCCTCCCCTCACATG 59.164 60.000 0.00 0.00 0.00 3.21
5255 17991 3.973267 GAGCTGGTCTGGTCGACGC 62.973 68.421 9.92 5.32 43.79 5.19
5357 18098 0.896019 AGAGACCTGTCGTGGAGTGG 60.896 60.000 0.00 0.00 34.09 4.00
5367 18108 9.384764 GCTTAAATTAAACAGATAGAGACCTGT 57.615 33.333 0.00 0.00 44.69 4.00
5438 18179 6.407475 AACATTTGTGCTGTTTCTGAAAAC 57.593 33.333 4.09 0.26 44.18 2.43
5439 18180 7.600375 TGTAAACATTTGTGCTGTTTCTGAAAA 59.400 29.630 4.09 0.00 43.72 2.29
5440 18181 7.062839 GTGTAAACATTTGTGCTGTTTCTGAAA 59.937 33.333 4.47 0.00 43.72 2.69
5443 18184 5.231991 GGTGTAAACATTTGTGCTGTTTCTG 59.768 40.000 4.47 0.00 43.72 3.02
5445 18186 4.506288 GGGTGTAAACATTTGTGCTGTTTC 59.494 41.667 4.47 0.00 43.72 2.78
5448 18189 3.295973 AGGGTGTAAACATTTGTGCTGT 58.704 40.909 0.00 0.00 0.00 4.40
5449 18190 4.320608 AAGGGTGTAAACATTTGTGCTG 57.679 40.909 0.00 0.00 0.00 4.41
5450 18191 5.351948 AAAAGGGTGTAAACATTTGTGCT 57.648 34.783 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.