Multiple sequence alignment - TraesCS6B01G429600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G429600 chr6B 100.000 2813 0 0 1 2813 697534322 697537134 0.000000e+00 5195.0
1 TraesCS6B01G429600 chr6B 96.573 2276 57 3 559 2813 697462418 697464693 0.000000e+00 3751.0
2 TraesCS6B01G429600 chr6B 85.080 1059 128 13 989 2044 697437214 697438245 0.000000e+00 1053.0
3 TraesCS6B01G429600 chr6B 82.549 871 127 11 1544 2401 697528044 697528902 0.000000e+00 743.0
4 TraesCS6B01G429600 chr6B 85.601 632 79 8 1416 2044 697438435 697439057 0.000000e+00 652.0
5 TraesCS6B01G429600 chr6B 84.464 560 75 2 989 1548 697520021 697520568 2.460000e-150 542.0
6 TraesCS6B01G429600 chr6A 90.225 1688 141 13 536 2205 605052959 605051278 0.000000e+00 2182.0
7 TraesCS6B01G429600 chr6A 84.314 663 55 15 2200 2813 605050543 605049881 1.110000e-168 603.0
8 TraesCS6B01G429600 chr6A 88.889 117 13 0 2292 2408 605055669 605055553 8.120000e-31 145.0
9 TraesCS6B01G429600 chr5B 81.928 415 56 11 2409 2807 626066079 626065668 1.610000e-87 333.0
10 TraesCS6B01G429600 chr5D 80.964 415 57 13 2409 2805 502182735 502182325 2.720000e-80 309.0
11 TraesCS6B01G429600 chr2B 80.529 416 63 12 2410 2810 457282431 457282843 1.270000e-78 303.0
12 TraesCS6B01G429600 chr2A 80.387 413 63 12 2410 2807 522084986 522085395 5.890000e-77 298.0
13 TraesCS6B01G429600 chr7D 80.488 410 59 14 2409 2803 591481876 591482279 7.620000e-76 294.0
14 TraesCS6B01G429600 chr5A 83.987 306 46 3 2409 2714 379830059 379829757 9.860000e-75 291.0
15 TraesCS6B01G429600 chr7A 79.952 414 65 9 2409 2807 644771657 644772067 3.550000e-74 289.0
16 TraesCS6B01G429600 chr7A 76.404 267 49 12 1076 1335 671219640 671219381 6.320000e-27 132.0
17 TraesCS6B01G429600 chr1B 76.792 293 57 8 1068 1353 9845524 9845812 1.350000e-33 154.0
18 TraesCS6B01G429600 chr1A 77.273 264 46 11 1079 1335 9103940 9103684 2.920000e-30 143.0
19 TraesCS6B01G429600 chr1D 75.486 257 63 0 1080 1336 7707093 7707349 2.940000e-25 126.0
20 TraesCS6B01G429600 chr1D 78.736 174 35 2 1070 1242 7745109 7745281 6.370000e-22 115.0
21 TraesCS6B01G429600 chr6D 97.059 34 1 0 268 301 23001265 23001232 1.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G429600 chr6B 697534322 697537134 2812 False 5195.000000 5195 100.000000 1 2813 1 chr6B.!!$F4 2812
1 TraesCS6B01G429600 chr6B 697462418 697464693 2275 False 3751.000000 3751 96.573000 559 2813 1 chr6B.!!$F1 2254
2 TraesCS6B01G429600 chr6B 697437214 697439057 1843 False 852.500000 1053 85.340500 989 2044 2 chr6B.!!$F5 1055
3 TraesCS6B01G429600 chr6B 697528044 697528902 858 False 743.000000 743 82.549000 1544 2401 1 chr6B.!!$F3 857
4 TraesCS6B01G429600 chr6B 697520021 697520568 547 False 542.000000 542 84.464000 989 1548 1 chr6B.!!$F2 559
5 TraesCS6B01G429600 chr6A 605049881 605055669 5788 True 976.666667 2182 87.809333 536 2813 3 chr6A.!!$R1 2277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.037975 CTGGGTCCTTTTGCATGTGC 60.038 55.0 0.00 0.0 42.5 4.57 F
1098 3287 0.036388 CGCTCAACTTCAAGGGCCTA 60.036 55.0 6.41 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 3876 1.122019 AGAAGCGGAGTCTTGGTGGT 61.122 55.0 0.00 0.0 0.00 4.16 R
1909 4111 3.050619 CTCTACGTTGTCACAACAGACC 58.949 50.0 20.58 0.0 37.73 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.994186 GGGCGTAGTAAATTGGGAGA 57.006 50.000 0.00 0.00 0.00 3.71
21 22 2.433239 GGGCGTAGTAAATTGGGAGAGA 59.567 50.000 0.00 0.00 0.00 3.10
22 23 3.071167 GGGCGTAGTAAATTGGGAGAGAT 59.929 47.826 0.00 0.00 0.00 2.75
23 24 4.058817 GGCGTAGTAAATTGGGAGAGATG 58.941 47.826 0.00 0.00 0.00 2.90
24 25 4.202223 GGCGTAGTAAATTGGGAGAGATGA 60.202 45.833 0.00 0.00 0.00 2.92
25 26 4.745620 GCGTAGTAAATTGGGAGAGATGAC 59.254 45.833 0.00 0.00 0.00 3.06
26 27 5.681437 GCGTAGTAAATTGGGAGAGATGACA 60.681 44.000 0.00 0.00 0.00 3.58
27 28 5.980116 CGTAGTAAATTGGGAGAGATGACAG 59.020 44.000 0.00 0.00 0.00 3.51
29 30 5.032846 AGTAAATTGGGAGAGATGACAGGA 58.967 41.667 0.00 0.00 0.00 3.86
31 32 1.186200 TTGGGAGAGATGACAGGACG 58.814 55.000 0.00 0.00 0.00 4.79
32 33 0.684479 TGGGAGAGATGACAGGACGG 60.684 60.000 0.00 0.00 0.00 4.79
33 34 1.395826 GGGAGAGATGACAGGACGGG 61.396 65.000 0.00 0.00 0.00 5.28
35 36 0.395862 GAGAGATGACAGGACGGGGA 60.396 60.000 0.00 0.00 0.00 4.81
36 37 0.041238 AGAGATGACAGGACGGGGAA 59.959 55.000 0.00 0.00 0.00 3.97
38 39 1.278127 GAGATGACAGGACGGGGAAAA 59.722 52.381 0.00 0.00 0.00 2.29
39 40 1.279271 AGATGACAGGACGGGGAAAAG 59.721 52.381 0.00 0.00 0.00 2.27
40 41 1.003233 GATGACAGGACGGGGAAAAGT 59.997 52.381 0.00 0.00 0.00 2.66
41 42 1.719529 TGACAGGACGGGGAAAAGTA 58.280 50.000 0.00 0.00 0.00 2.24
42 43 2.048601 TGACAGGACGGGGAAAAGTAA 58.951 47.619 0.00 0.00 0.00 2.24
43 44 2.438763 TGACAGGACGGGGAAAAGTAAA 59.561 45.455 0.00 0.00 0.00 2.01
44 45 3.072211 GACAGGACGGGGAAAAGTAAAG 58.928 50.000 0.00 0.00 0.00 1.85
45 46 1.810755 CAGGACGGGGAAAAGTAAAGC 59.189 52.381 0.00 0.00 0.00 3.51
48 49 1.196127 GACGGGGAAAAGTAAAGCACG 59.804 52.381 0.00 0.00 0.00 5.34
49 50 0.519961 CGGGGAAAAGTAAAGCACGG 59.480 55.000 0.00 0.00 0.00 4.94
50 51 1.612676 GGGGAAAAGTAAAGCACGGT 58.387 50.000 0.00 0.00 0.00 4.83
51 52 2.781923 GGGGAAAAGTAAAGCACGGTA 58.218 47.619 0.00 0.00 0.00 4.02
52 53 2.485426 GGGGAAAAGTAAAGCACGGTAC 59.515 50.000 0.00 0.00 0.00 3.34
66 67 2.578369 GGTACACGACGCATAGCTG 58.422 57.895 0.00 0.00 0.00 4.24
67 68 0.179145 GGTACACGACGCATAGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
68 69 1.064505 GGTACACGACGCATAGCTGTA 59.935 52.381 0.00 0.00 0.00 2.74
69 70 2.107178 GTACACGACGCATAGCTGTAC 58.893 52.381 0.00 7.99 32.70 2.90
70 71 0.179145 ACACGACGCATAGCTGTACC 60.179 55.000 0.00 0.00 0.00 3.34
71 72 0.179148 CACGACGCATAGCTGTACCA 60.179 55.000 0.00 0.00 0.00 3.25
72 73 0.179145 ACGACGCATAGCTGTACCAC 60.179 55.000 0.00 0.00 0.00 4.16
74 75 1.560923 GACGCATAGCTGTACCACTG 58.439 55.000 0.00 0.00 0.00 3.66
75 76 0.175760 ACGCATAGCTGTACCACTGG 59.824 55.000 0.00 0.00 0.00 4.00
76 77 0.530650 CGCATAGCTGTACCACTGGG 60.531 60.000 0.00 0.00 41.29 4.45
77 78 0.815615 GCATAGCTGTACCACTGGGC 60.816 60.000 0.00 0.00 37.90 5.36
78 79 0.530650 CATAGCTGTACCACTGGGCG 60.531 60.000 0.00 0.00 37.90 6.13
79 80 2.311688 ATAGCTGTACCACTGGGCGC 62.312 60.000 0.00 0.00 37.90 6.53
93 94 4.615815 GCGCGGGCATCTCTCCAT 62.616 66.667 20.76 0.00 39.62 3.41
94 95 2.664185 CGCGGGCATCTCTCCATG 60.664 66.667 0.00 0.00 0.00 3.66
106 107 6.179504 CATCTCTCCATGCACATATTAAGC 57.820 41.667 0.00 0.00 0.00 3.09
107 108 5.557576 TCTCTCCATGCACATATTAAGCT 57.442 39.130 0.00 0.00 0.00 3.74
109 110 5.070847 TCTCTCCATGCACATATTAAGCTGA 59.929 40.000 0.00 0.00 0.00 4.26
110 111 5.872963 TCTCCATGCACATATTAAGCTGAT 58.127 37.500 0.00 0.00 0.00 2.90
111 112 6.301486 TCTCCATGCACATATTAAGCTGATT 58.699 36.000 0.00 0.00 0.00 2.57
112 113 6.429078 TCTCCATGCACATATTAAGCTGATTC 59.571 38.462 0.00 0.00 0.00 2.52
113 114 5.474532 TCCATGCACATATTAAGCTGATTCC 59.525 40.000 0.00 0.00 0.00 3.01
114 115 5.336213 CCATGCACATATTAAGCTGATTCCC 60.336 44.000 0.00 0.00 0.00 3.97
115 116 5.052693 TGCACATATTAAGCTGATTCCCT 57.947 39.130 0.00 0.00 0.00 4.20
116 117 4.823442 TGCACATATTAAGCTGATTCCCTG 59.177 41.667 0.00 0.00 0.00 4.45
117 118 5.065914 GCACATATTAAGCTGATTCCCTGA 58.934 41.667 0.00 0.00 0.00 3.86
118 119 5.532406 GCACATATTAAGCTGATTCCCTGAA 59.468 40.000 0.00 0.00 0.00 3.02
119 120 6.514048 GCACATATTAAGCTGATTCCCTGAAC 60.514 42.308 0.00 0.00 0.00 3.18
120 121 6.543465 CACATATTAAGCTGATTCCCTGAACA 59.457 38.462 0.00 0.00 0.00 3.18
121 122 6.769822 ACATATTAAGCTGATTCCCTGAACAG 59.230 38.462 0.00 0.00 0.00 3.16
124 125 3.278668 AGCTGATTCCCTGAACAGATG 57.721 47.619 3.19 0.00 32.90 2.90
125 126 2.575279 AGCTGATTCCCTGAACAGATGT 59.425 45.455 3.19 0.00 32.90 3.06
126 127 3.776969 AGCTGATTCCCTGAACAGATGTA 59.223 43.478 3.19 0.00 32.90 2.29
128 129 4.623886 GCTGATTCCCTGAACAGATGTACA 60.624 45.833 0.00 0.00 32.90 2.90
130 131 5.430886 TGATTCCCTGAACAGATGTACATG 58.569 41.667 14.43 3.72 0.00 3.21
131 132 5.189539 TGATTCCCTGAACAGATGTACATGA 59.810 40.000 14.43 0.00 0.00 3.07
132 133 5.497464 TTCCCTGAACAGATGTACATGAA 57.503 39.130 14.43 4.30 0.00 2.57
133 134 4.832248 TCCCTGAACAGATGTACATGAAC 58.168 43.478 14.43 0.00 0.00 3.18
134 135 4.285775 TCCCTGAACAGATGTACATGAACA 59.714 41.667 14.43 6.63 0.00 3.18
135 136 5.045651 TCCCTGAACAGATGTACATGAACAT 60.046 40.000 14.43 0.00 42.75 2.71
137 138 5.876460 CCTGAACAGATGTACATGAACATGA 59.124 40.000 14.43 0.13 40.17 3.07
138 139 6.183360 CCTGAACAGATGTACATGAACATGAC 60.183 42.308 14.43 13.44 40.17 3.06
140 141 5.072040 ACAGATGTACATGAACATGACGA 57.928 39.130 14.43 4.79 40.17 4.20
141 142 4.864806 ACAGATGTACATGAACATGACGAC 59.135 41.667 14.43 13.99 40.17 4.34
142 143 4.027377 CAGATGTACATGAACATGACGACG 60.027 45.833 14.43 0.00 40.17 5.12
143 144 3.291809 TGTACATGAACATGACGACGT 57.708 42.857 19.56 0.00 41.20 4.34
144 145 2.983803 TGTACATGAACATGACGACGTG 59.016 45.455 19.56 5.53 41.20 4.49
145 146 1.428448 ACATGAACATGACGACGTGG 58.572 50.000 19.56 0.00 41.20 4.94
147 148 1.351430 ATGAACATGACGACGTGGCG 61.351 55.000 4.58 0.00 37.35 5.69
149 150 2.210524 GAACATGACGACGTGGCGTG 62.211 60.000 5.02 6.27 45.72 5.34
152 153 1.080093 ATGACGACGTGGCGTGATT 60.080 52.632 5.02 0.00 45.72 2.57
154 155 0.730155 TGACGACGTGGCGTGATTAC 60.730 55.000 5.02 0.00 45.72 1.89
155 156 0.455633 GACGACGTGGCGTGATTACT 60.456 55.000 5.02 0.00 45.72 2.24
158 159 1.202110 CGACGTGGCGTGATTACTACT 60.202 52.381 0.00 0.00 41.37 2.57
159 160 2.182825 GACGTGGCGTGATTACTACTG 58.817 52.381 0.00 0.00 41.37 2.74
160 161 1.542915 ACGTGGCGTGATTACTACTGT 59.457 47.619 0.00 0.00 39.18 3.55
162 163 3.191162 ACGTGGCGTGATTACTACTGTAA 59.809 43.478 0.00 0.00 39.65 2.41
163 164 4.168014 CGTGGCGTGATTACTACTGTAAA 58.832 43.478 0.00 0.00 41.36 2.01
165 166 5.276207 CGTGGCGTGATTACTACTGTAAATG 60.276 44.000 0.00 0.00 41.36 2.32
166 167 5.808540 GTGGCGTGATTACTACTGTAAATGA 59.191 40.000 0.00 0.00 41.36 2.57
167 168 6.479001 GTGGCGTGATTACTACTGTAAATGAT 59.521 38.462 0.00 0.00 41.36 2.45
168 169 7.650504 GTGGCGTGATTACTACTGTAAATGATA 59.349 37.037 0.00 0.00 41.36 2.15
169 170 8.198778 TGGCGTGATTACTACTGTAAATGATAA 58.801 33.333 0.00 0.00 41.36 1.75
178 179 8.256611 ACTACTGTAAATGATAACACTGCTTG 57.743 34.615 0.00 0.00 0.00 4.01
179 180 8.094548 ACTACTGTAAATGATAACACTGCTTGA 58.905 33.333 0.00 0.00 0.00 3.02
182 183 7.826252 ACTGTAAATGATAACACTGCTTGATCT 59.174 33.333 0.00 0.00 0.00 2.75
184 185 6.690194 AAATGATAACACTGCTTGATCTCC 57.310 37.500 0.00 0.00 0.00 3.71
186 187 3.118261 TGATAACACTGCTTGATCTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
189 190 0.467384 CACTGCTTGATCTCCCCGAT 59.533 55.000 0.00 0.00 34.25 4.18
190 191 1.134280 CACTGCTTGATCTCCCCGATT 60.134 52.381 0.00 0.00 30.84 3.34
191 192 1.139853 ACTGCTTGATCTCCCCGATTC 59.860 52.381 0.00 0.00 30.84 2.52
192 193 1.139654 CTGCTTGATCTCCCCGATTCA 59.860 52.381 0.00 0.00 30.84 2.57
193 194 1.559219 TGCTTGATCTCCCCGATTCAA 59.441 47.619 0.00 0.00 30.84 2.69
194 195 1.943340 GCTTGATCTCCCCGATTCAAC 59.057 52.381 0.00 0.00 30.84 3.18
195 196 2.680805 GCTTGATCTCCCCGATTCAACA 60.681 50.000 0.00 0.00 30.84 3.33
196 197 2.691409 TGATCTCCCCGATTCAACAC 57.309 50.000 0.00 0.00 30.84 3.32
197 198 1.905894 TGATCTCCCCGATTCAACACA 59.094 47.619 0.00 0.00 30.84 3.72
198 199 2.304470 TGATCTCCCCGATTCAACACAA 59.696 45.455 0.00 0.00 30.84 3.33
199 200 3.054434 TGATCTCCCCGATTCAACACAAT 60.054 43.478 0.00 0.00 30.84 2.71
200 201 2.985896 TCTCCCCGATTCAACACAATC 58.014 47.619 0.00 0.00 0.00 2.67
201 202 2.304470 TCTCCCCGATTCAACACAATCA 59.696 45.455 0.00 0.00 32.99 2.57
202 203 2.420022 CTCCCCGATTCAACACAATCAC 59.580 50.000 0.00 0.00 32.99 3.06
203 204 1.130373 CCCCGATTCAACACAATCACG 59.870 52.381 0.00 0.00 32.99 4.35
204 205 1.465689 CCCGATTCAACACAATCACGC 60.466 52.381 0.00 0.00 32.99 5.34
208 209 2.049077 TTCAACACAATCACGCATGC 57.951 45.000 7.91 7.91 0.00 4.06
209 210 0.950116 TCAACACAATCACGCATGCA 59.050 45.000 19.57 0.00 0.00 3.96
210 211 1.069091 TCAACACAATCACGCATGCAG 60.069 47.619 19.57 12.98 0.00 4.41
212 213 1.239296 ACACAATCACGCATGCAGCT 61.239 50.000 19.57 0.00 42.61 4.24
213 214 0.728542 CACAATCACGCATGCAGCTA 59.271 50.000 19.57 0.00 42.61 3.32
216 217 0.949397 AATCACGCATGCAGCTATGG 59.051 50.000 19.57 1.32 42.61 2.74
217 218 0.179037 ATCACGCATGCAGCTATGGT 60.179 50.000 19.57 2.04 42.61 3.55
218 219 1.091197 TCACGCATGCAGCTATGGTG 61.091 55.000 19.57 15.10 42.61 4.17
220 221 0.392863 ACGCATGCAGCTATGGTGAA 60.393 50.000 19.57 0.00 42.61 3.18
221 222 0.734309 CGCATGCAGCTATGGTGAAA 59.266 50.000 19.57 0.00 42.61 2.69
222 223 1.335810 CGCATGCAGCTATGGTGAAAT 59.664 47.619 19.57 0.00 42.61 2.17
223 224 2.603892 CGCATGCAGCTATGGTGAAATC 60.604 50.000 19.57 0.00 42.61 2.17
224 225 2.359848 GCATGCAGCTATGGTGAAATCA 59.640 45.455 14.21 0.00 41.15 2.57
225 226 3.181484 GCATGCAGCTATGGTGAAATCAA 60.181 43.478 14.21 0.00 41.15 2.57
226 227 4.678574 GCATGCAGCTATGGTGAAATCAAA 60.679 41.667 14.21 0.00 41.15 2.69
227 228 5.412640 CATGCAGCTATGGTGAAATCAAAA 58.587 37.500 0.00 0.00 32.22 2.44
230 231 5.185442 TGCAGCTATGGTGAAATCAAAATGA 59.815 36.000 0.66 0.00 32.22 2.57
231 232 5.747197 GCAGCTATGGTGAAATCAAAATGAG 59.253 40.000 0.66 0.00 32.22 2.90
232 233 6.405065 GCAGCTATGGTGAAATCAAAATGAGA 60.405 38.462 0.66 0.00 32.22 3.27
234 235 7.701078 CAGCTATGGTGAAATCAAAATGAGAAG 59.299 37.037 0.00 0.00 32.22 2.85
235 236 7.613022 AGCTATGGTGAAATCAAAATGAGAAGA 59.387 33.333 0.00 0.00 0.00 2.87
236 237 7.914346 GCTATGGTGAAATCAAAATGAGAAGAG 59.086 37.037 0.00 0.00 0.00 2.85
237 238 6.017400 TGGTGAAATCAAAATGAGAAGAGC 57.983 37.500 0.00 0.00 0.00 4.09
238 239 5.771666 TGGTGAAATCAAAATGAGAAGAGCT 59.228 36.000 0.00 0.00 0.00 4.09
239 240 6.266103 TGGTGAAATCAAAATGAGAAGAGCTT 59.734 34.615 0.00 0.00 0.00 3.74
240 241 7.448161 TGGTGAAATCAAAATGAGAAGAGCTTA 59.552 33.333 0.00 0.00 0.00 3.09
244 245 9.852091 GAAATCAAAATGAGAAGAGCTTATTGT 57.148 29.630 0.00 0.00 33.55 2.71
253 254 7.103641 TGAGAAGAGCTTATTGTTTATCGGTT 58.896 34.615 0.00 0.00 0.00 4.44
254 255 7.606456 TGAGAAGAGCTTATTGTTTATCGGTTT 59.394 33.333 0.00 0.00 0.00 3.27
255 256 8.336801 AGAAGAGCTTATTGTTTATCGGTTTT 57.663 30.769 0.00 0.00 0.00 2.43
256 257 8.237267 AGAAGAGCTTATTGTTTATCGGTTTTG 58.763 33.333 0.00 0.00 0.00 2.44
258 259 8.281212 AGAGCTTATTGTTTATCGGTTTTGAT 57.719 30.769 0.00 0.00 0.00 2.57
259 260 8.398665 AGAGCTTATTGTTTATCGGTTTTGATC 58.601 33.333 0.00 0.00 0.00 2.92
260 261 8.050778 AGCTTATTGTTTATCGGTTTTGATCA 57.949 30.769 0.00 0.00 0.00 2.92
261 262 7.968405 AGCTTATTGTTTATCGGTTTTGATCAC 59.032 33.333 0.00 0.00 0.00 3.06
263 264 8.958175 TTATTGTTTATCGGTTTTGATCACAC 57.042 30.769 0.00 0.00 0.00 3.82
264 265 5.365403 TGTTTATCGGTTTTGATCACACC 57.635 39.130 11.85 11.85 0.00 4.16
265 266 4.216687 TGTTTATCGGTTTTGATCACACCC 59.783 41.667 15.01 1.85 0.00 4.61
267 268 0.107081 TCGGTTTTGATCACACCCGT 59.893 50.000 16.20 0.00 35.20 5.28
268 269 0.237235 CGGTTTTGATCACACCCGTG 59.763 55.000 9.48 0.00 45.08 4.94
269 270 0.596082 GGTTTTGATCACACCCGTGG 59.404 55.000 11.03 0.00 43.79 4.94
270 271 1.600023 GTTTTGATCACACCCGTGGA 58.400 50.000 0.00 0.00 43.79 4.02
271 272 1.265905 GTTTTGATCACACCCGTGGAC 59.734 52.381 0.00 0.00 43.79 4.02
272 273 0.470341 TTTGATCACACCCGTGGACA 59.530 50.000 0.00 0.00 43.79 4.02
273 274 0.470341 TTGATCACACCCGTGGACAA 59.530 50.000 0.00 0.00 43.79 3.18
274 275 0.690192 TGATCACACCCGTGGACAAT 59.310 50.000 0.00 0.00 43.79 2.71
275 276 1.073125 TGATCACACCCGTGGACAATT 59.927 47.619 0.00 0.00 43.79 2.32
276 277 2.159382 GATCACACCCGTGGACAATTT 58.841 47.619 0.00 0.00 43.79 1.82
277 278 1.313772 TCACACCCGTGGACAATTTG 58.686 50.000 0.00 0.00 43.79 2.32
280 281 0.039256 CACCCGTGGACAATTTGCTG 60.039 55.000 0.00 0.00 0.00 4.41
281 282 1.178534 ACCCGTGGACAATTTGCTGG 61.179 55.000 0.00 0.00 0.00 4.85
283 284 0.039256 CCGTGGACAATTTGCTGGTG 60.039 55.000 0.00 0.00 0.00 4.17
284 285 0.950836 CGTGGACAATTTGCTGGTGA 59.049 50.000 0.00 0.00 0.00 4.02
285 286 1.336440 CGTGGACAATTTGCTGGTGAA 59.664 47.619 0.00 0.00 0.00 3.18
286 287 2.223688 CGTGGACAATTTGCTGGTGAAA 60.224 45.455 0.00 0.00 0.00 2.69
287 288 3.552684 CGTGGACAATTTGCTGGTGAAAT 60.553 43.478 0.00 0.00 0.00 2.17
288 289 3.989817 GTGGACAATTTGCTGGTGAAATC 59.010 43.478 0.00 0.00 0.00 2.17
289 290 3.640498 TGGACAATTTGCTGGTGAAATCA 59.360 39.130 0.00 0.00 0.00 2.57
290 291 4.100653 TGGACAATTTGCTGGTGAAATCAA 59.899 37.500 0.00 0.00 0.00 2.57
291 292 5.055812 GGACAATTTGCTGGTGAAATCAAA 58.944 37.500 0.00 0.00 33.64 2.69
292 293 5.050159 GGACAATTTGCTGGTGAAATCAAAC 60.050 40.000 0.00 0.00 32.17 2.93
293 294 5.426504 ACAATTTGCTGGTGAAATCAAACA 58.573 33.333 0.00 0.00 32.17 2.83
294 295 6.056884 ACAATTTGCTGGTGAAATCAAACAT 58.943 32.000 0.00 0.00 32.17 2.71
295 296 6.203338 ACAATTTGCTGGTGAAATCAAACATC 59.797 34.615 0.00 0.00 32.17 3.06
297 298 5.471556 TTGCTGGTGAAATCAAACATCAT 57.528 34.783 0.00 0.00 0.00 2.45
299 300 6.778834 TGCTGGTGAAATCAAACATCATAT 57.221 33.333 0.00 0.00 0.00 1.78
300 301 7.172868 TGCTGGTGAAATCAAACATCATATT 57.827 32.000 0.00 0.00 0.00 1.28
301 302 8.291191 TGCTGGTGAAATCAAACATCATATTA 57.709 30.769 0.00 0.00 0.00 0.98
302 303 8.747471 TGCTGGTGAAATCAAACATCATATTAA 58.253 29.630 0.00 0.00 0.00 1.40
303 304 9.585099 GCTGGTGAAATCAAACATCATATTAAA 57.415 29.630 0.00 0.00 0.00 1.52
324 325 8.755696 TTAAACATGACCAAAGATATTGTTGC 57.244 30.769 0.00 0.00 0.00 4.17
325 326 6.594788 AACATGACCAAAGATATTGTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
326 327 6.594788 ACATGACCAAAGATATTGTTGCTT 57.405 33.333 0.00 0.00 0.00 3.91
327 328 6.392354 ACATGACCAAAGATATTGTTGCTTG 58.608 36.000 0.00 0.00 0.00 4.01
328 329 4.808558 TGACCAAAGATATTGTTGCTTGC 58.191 39.130 0.00 0.00 0.00 4.01
331 332 6.208402 TGACCAAAGATATTGTTGCTTGCTTA 59.792 34.615 0.00 0.00 0.00 3.09
333 334 6.209391 ACCAAAGATATTGTTGCTTGCTTAGT 59.791 34.615 0.00 0.00 0.00 2.24
336 337 8.454106 CAAAGATATTGTTGCTTGCTTAGTACT 58.546 33.333 0.00 0.00 0.00 2.73
337 338 8.567285 AAGATATTGTTGCTTGCTTAGTACTT 57.433 30.769 0.00 0.00 0.00 2.24
342 343 8.797266 ATTGTTGCTTGCTTAGTACTTAAAAC 57.203 30.769 0.00 0.00 0.00 2.43
343 344 6.423862 TGTTGCTTGCTTAGTACTTAAAACG 58.576 36.000 0.00 0.00 0.00 3.60
344 345 5.025986 TGCTTGCTTAGTACTTAAAACGC 57.974 39.130 0.00 0.00 0.00 4.84
345 346 4.753107 TGCTTGCTTAGTACTTAAAACGCT 59.247 37.500 0.00 0.00 0.00 5.07
347 348 6.424509 TGCTTGCTTAGTACTTAAAACGCTAA 59.575 34.615 0.00 0.00 0.00 3.09
350 351 7.298507 TGCTTAGTACTTAAAACGCTAATGG 57.701 36.000 0.00 0.00 0.00 3.16
351 352 6.875195 TGCTTAGTACTTAAAACGCTAATGGT 59.125 34.615 0.00 0.00 0.00 3.55
352 353 7.148540 TGCTTAGTACTTAAAACGCTAATGGTG 60.149 37.037 0.00 0.00 0.00 4.17
353 354 7.063780 GCTTAGTACTTAAAACGCTAATGGTGA 59.936 37.037 0.00 0.00 0.00 4.02
354 355 8.830201 TTAGTACTTAAAACGCTAATGGTGAA 57.170 30.769 0.00 0.00 0.00 3.18
355 356 7.125536 AGTACTTAAAACGCTAATGGTGAAC 57.874 36.000 0.00 0.00 0.00 3.18
356 357 5.025986 ACTTAAAACGCTAATGGTGAACG 57.974 39.130 0.00 0.00 0.00 3.95
357 358 2.325509 AAAACGCTAATGGTGAACGC 57.674 45.000 0.00 0.00 0.00 4.84
358 359 1.519408 AAACGCTAATGGTGAACGCT 58.481 45.000 0.00 0.00 0.00 5.07
359 360 1.076332 AACGCTAATGGTGAACGCTC 58.924 50.000 0.00 0.00 0.00 5.03
360 361 0.739813 ACGCTAATGGTGAACGCTCC 60.740 55.000 0.00 0.00 0.00 4.70
361 362 0.460284 CGCTAATGGTGAACGCTCCT 60.460 55.000 0.00 0.00 0.00 3.69
362 363 1.291132 GCTAATGGTGAACGCTCCTC 58.709 55.000 0.00 0.00 0.00 3.71
364 365 0.174845 TAATGGTGAACGCTCCTCCG 59.825 55.000 0.00 0.00 0.00 4.63
366 367 2.432628 GGTGAACGCTCCTCCGTG 60.433 66.667 0.00 0.00 41.90 4.94
367 368 3.112709 GTGAACGCTCCTCCGTGC 61.113 66.667 0.00 0.00 41.90 5.34
368 369 3.303135 TGAACGCTCCTCCGTGCT 61.303 61.111 0.00 0.00 41.90 4.40
369 370 2.048127 GAACGCTCCTCCGTGCTT 60.048 61.111 0.00 0.00 41.90 3.91
370 371 2.048127 AACGCTCCTCCGTGCTTC 60.048 61.111 0.00 0.00 41.90 3.86
371 372 3.916392 AACGCTCCTCCGTGCTTCG 62.916 63.158 0.00 0.00 41.90 3.79
373 374 4.443266 GCTCCTCCGTGCTTCGCT 62.443 66.667 0.00 0.00 38.35 4.93
374 375 2.507992 CTCCTCCGTGCTTCGCTG 60.508 66.667 0.00 0.00 38.35 5.18
375 376 3.997064 CTCCTCCGTGCTTCGCTGG 62.997 68.421 0.00 0.00 38.35 4.85
376 377 4.069232 CCTCCGTGCTTCGCTGGA 62.069 66.667 0.00 0.00 38.35 3.86
387 388 4.072088 CGCTGGACGCAAACGGTC 62.072 66.667 0.00 0.00 46.04 4.79
388 389 3.723348 GCTGGACGCAAACGGTCC 61.723 66.667 4.06 4.06 46.04 4.46
389 390 2.280524 CTGGACGCAAACGGTCCA 60.281 61.111 12.60 12.60 46.04 4.02
390 391 2.589442 TGGACGCAAACGGTCCAC 60.589 61.111 9.46 0.00 46.04 4.02
400 401 2.048877 CGGTCCACGTACGCCTTT 60.049 61.111 16.72 0.00 37.93 3.11
401 402 1.665599 CGGTCCACGTACGCCTTTT 60.666 57.895 16.72 0.00 37.93 2.27
403 404 1.205820 GTCCACGTACGCCTTTTGC 59.794 57.895 16.72 0.00 0.00 3.68
406 407 1.206578 CACGTACGCCTTTTGCCAG 59.793 57.895 16.72 0.00 36.24 4.85
407 408 2.175811 CGTACGCCTTTTGCCAGC 59.824 61.111 0.52 0.00 36.24 4.85
408 409 2.566529 GTACGCCTTTTGCCAGCC 59.433 61.111 0.00 0.00 36.24 4.85
409 410 2.114199 TACGCCTTTTGCCAGCCA 59.886 55.556 0.00 0.00 36.24 4.75
412 413 2.435410 GCCTTTTGCCAGCCATGC 60.435 61.111 0.00 0.00 0.00 4.06
413 414 3.061752 CCTTTTGCCAGCCATGCA 58.938 55.556 0.00 0.00 36.84 3.96
414 415 1.600107 CCTTTTGCCAGCCATGCAT 59.400 52.632 0.00 0.00 38.76 3.96
415 416 0.742990 CCTTTTGCCAGCCATGCATG 60.743 55.000 20.19 20.19 38.76 4.06
416 417 1.366111 CTTTTGCCAGCCATGCATGC 61.366 55.000 21.69 11.82 38.76 4.06
417 418 2.113243 TTTTGCCAGCCATGCATGCA 62.113 50.000 25.04 25.04 38.76 3.96
418 419 2.789845 TTTGCCAGCCATGCATGCAC 62.790 55.000 25.37 14.85 38.76 4.57
419 420 3.765578 GCCAGCCATGCATGCACA 61.766 61.111 25.37 0.00 0.00 4.57
420 421 2.494445 CCAGCCATGCATGCACAG 59.506 61.111 25.37 18.31 0.00 3.66
421 422 2.494445 CAGCCATGCATGCACAGG 59.506 61.111 28.18 28.18 0.00 4.00
422 423 2.036731 AGCCATGCATGCACAGGT 59.963 55.556 30.74 23.96 0.00 4.00
423 424 1.033202 CAGCCATGCATGCACAGGTA 61.033 55.000 30.74 8.97 0.00 3.08
425 426 1.723273 CCATGCATGCACAGGTACG 59.277 57.895 25.37 5.46 0.00 3.67
426 427 1.026182 CCATGCATGCACAGGTACGT 61.026 55.000 25.37 0.38 0.00 3.57
427 428 1.650825 CATGCATGCACAGGTACGTA 58.349 50.000 25.37 0.00 0.00 3.57
428 429 1.327460 CATGCATGCACAGGTACGTAC 59.673 52.381 25.37 17.56 0.00 3.67
429 430 0.318762 TGCATGCACAGGTACGTACA 59.681 50.000 26.02 5.92 0.00 2.90
431 432 1.593006 GCATGCACAGGTACGTACATC 59.407 52.381 26.02 10.66 0.00 3.06
432 433 1.852280 CATGCACAGGTACGTACATCG 59.148 52.381 26.02 15.95 46.00 3.84
433 434 0.171679 TGCACAGGTACGTACATCGG 59.828 55.000 26.02 14.43 44.69 4.18
434 435 1.143969 GCACAGGTACGTACATCGGC 61.144 60.000 26.02 19.72 44.69 5.54
435 436 0.526954 CACAGGTACGTACATCGGCC 60.527 60.000 26.02 8.71 44.69 6.13
437 438 1.380246 AGGTACGTACATCGGCCCA 60.380 57.895 26.02 0.00 44.69 5.36
438 439 0.757935 AGGTACGTACATCGGCCCAT 60.758 55.000 26.02 0.00 44.69 4.00
439 440 0.599204 GGTACGTACATCGGCCCATG 60.599 60.000 26.02 9.02 44.69 3.66
440 441 1.068417 TACGTACATCGGCCCATGC 59.932 57.895 10.63 0.00 44.69 4.06
441 442 1.396607 TACGTACATCGGCCCATGCT 61.397 55.000 10.63 0.71 44.69 3.79
443 444 1.447643 GTACATCGGCCCATGCTCT 59.552 57.895 10.63 0.00 37.74 4.09
444 445 0.882042 GTACATCGGCCCATGCTCTG 60.882 60.000 10.63 0.00 37.74 3.35
445 446 2.665008 TACATCGGCCCATGCTCTGC 62.665 60.000 10.63 0.00 37.74 4.26
448 449 4.529219 CGGCCCATGCTCTGCGTA 62.529 66.667 0.00 0.00 37.74 4.42
449 450 2.897350 GGCCCATGCTCTGCGTAC 60.897 66.667 0.00 0.00 37.74 3.67
450 451 2.125147 GCCCATGCTCTGCGTACA 60.125 61.111 0.00 0.00 33.53 2.90
452 453 2.167219 CCCATGCTCTGCGTACACG 61.167 63.158 0.00 0.00 43.27 4.49
456 457 0.456824 ATGCTCTGCGTACACGTCAG 60.457 55.000 15.41 15.41 41.40 3.51
457 458 1.209383 GCTCTGCGTACACGTCAGA 59.791 57.895 19.93 19.93 44.05 3.27
458 459 0.179161 GCTCTGCGTACACGTCAGAT 60.179 55.000 20.80 0.00 44.61 2.90
459 460 1.539341 CTCTGCGTACACGTCAGATG 58.461 55.000 20.80 14.43 44.61 2.90
460 461 0.456142 TCTGCGTACACGTCAGATGC 60.456 55.000 18.35 0.00 42.68 3.91
461 462 1.413767 CTGCGTACACGTCAGATGCC 61.414 60.000 16.11 0.00 42.05 4.40
462 463 1.153823 GCGTACACGTCAGATGCCT 60.154 57.895 3.44 0.00 42.22 4.75
463 464 1.413767 GCGTACACGTCAGATGCCTG 61.414 60.000 3.44 0.00 42.22 4.85
464 465 0.109272 CGTACACGTCAGATGCCTGT 60.109 55.000 0.00 0.00 41.16 4.00
465 466 1.131693 CGTACACGTCAGATGCCTGTA 59.868 52.381 0.00 0.00 41.16 2.74
466 467 2.414957 CGTACACGTCAGATGCCTGTAA 60.415 50.000 0.00 0.00 41.16 2.41
467 468 2.370281 ACACGTCAGATGCCTGTAAG 57.630 50.000 0.00 0.00 41.16 2.34
468 469 1.893137 ACACGTCAGATGCCTGTAAGA 59.107 47.619 0.00 0.00 41.16 2.10
469 470 2.497675 ACACGTCAGATGCCTGTAAGAT 59.502 45.455 0.00 0.00 41.16 2.40
470 471 2.862536 CACGTCAGATGCCTGTAAGATG 59.137 50.000 0.00 0.00 41.16 2.90
471 472 1.863454 CGTCAGATGCCTGTAAGATGC 59.137 52.381 0.00 0.00 41.16 3.91
472 473 2.216898 GTCAGATGCCTGTAAGATGCC 58.783 52.381 0.00 0.00 41.16 4.40
473 474 2.121948 TCAGATGCCTGTAAGATGCCT 58.878 47.619 0.00 0.00 41.16 4.75
474 475 2.158856 TCAGATGCCTGTAAGATGCCTG 60.159 50.000 0.00 0.00 41.16 4.85
475 476 1.142465 AGATGCCTGTAAGATGCCTGG 59.858 52.381 0.00 0.00 34.07 4.45
477 478 1.207488 TGCCTGTAAGATGCCTGGGT 61.207 55.000 0.00 0.00 34.07 4.51
478 479 0.464554 GCCTGTAAGATGCCTGGGTC 60.465 60.000 0.00 0.00 34.07 4.46
479 480 0.181350 CCTGTAAGATGCCTGGGTCC 59.819 60.000 0.00 0.00 34.07 4.46
481 482 1.561542 CTGTAAGATGCCTGGGTCCTT 59.438 52.381 0.00 0.00 34.07 3.36
482 483 1.992557 TGTAAGATGCCTGGGTCCTTT 59.007 47.619 0.00 0.00 0.00 3.11
483 484 2.378547 TGTAAGATGCCTGGGTCCTTTT 59.621 45.455 0.00 0.00 0.00 2.27
484 485 1.928868 AAGATGCCTGGGTCCTTTTG 58.071 50.000 0.00 0.00 0.00 2.44
485 486 0.613012 AGATGCCTGGGTCCTTTTGC 60.613 55.000 0.00 0.00 0.00 3.68
486 487 0.899717 GATGCCTGGGTCCTTTTGCA 60.900 55.000 0.00 0.00 0.00 4.08
488 489 1.186917 TGCCTGGGTCCTTTTGCATG 61.187 55.000 0.00 0.00 0.00 4.06
489 490 1.187567 GCCTGGGTCCTTTTGCATGT 61.188 55.000 0.00 0.00 0.00 3.21
490 491 0.604578 CCTGGGTCCTTTTGCATGTG 59.395 55.000 0.00 0.00 0.00 3.21
491 492 0.037975 CTGGGTCCTTTTGCATGTGC 60.038 55.000 0.00 0.00 42.50 4.57
492 493 1.080569 GGGTCCTTTTGCATGTGCG 60.081 57.895 0.01 0.00 45.83 5.34
493 494 1.659794 GGTCCTTTTGCATGTGCGT 59.340 52.632 0.01 0.00 45.83 5.24
494 495 0.664166 GGTCCTTTTGCATGTGCGTG 60.664 55.000 0.01 0.00 45.83 5.34
497 498 2.023223 CTTTTGCATGTGCGTGGGC 61.023 57.895 0.01 0.00 45.83 5.36
498 499 3.512223 TTTTGCATGTGCGTGGGCC 62.512 57.895 0.00 0.00 45.83 5.80
511 512 4.344865 GGGCCCTCGCTGGTTCAA 62.345 66.667 17.04 0.00 34.44 2.69
513 514 1.223487 GGCCCTCGCTGGTTCAATA 59.777 57.895 0.00 0.00 34.44 1.90
514 515 1.095807 GGCCCTCGCTGGTTCAATAC 61.096 60.000 0.00 0.00 34.44 1.89
516 517 1.656652 CCCTCGCTGGTTCAATACAG 58.343 55.000 0.00 0.00 37.76 2.74
517 518 1.656652 CCTCGCTGGTTCAATACAGG 58.343 55.000 0.00 0.00 35.30 4.00
519 520 0.392461 TCGCTGGTTCAATACAGGCC 60.392 55.000 0.00 0.00 35.30 5.19
522 523 1.892474 GCTGGTTCAATACAGGCCAAA 59.108 47.619 5.01 0.00 35.30 3.28
523 524 2.298729 GCTGGTTCAATACAGGCCAAAA 59.701 45.455 5.01 0.00 35.30 2.44
524 525 3.244044 GCTGGTTCAATACAGGCCAAAAA 60.244 43.478 5.01 0.00 35.30 1.94
526 527 5.337169 GCTGGTTCAATACAGGCCAAAAATA 60.337 40.000 5.01 0.00 35.30 1.40
528 529 7.251321 TGGTTCAATACAGGCCAAAAATAAT 57.749 32.000 5.01 0.00 0.00 1.28
529 530 7.684529 TGGTTCAATACAGGCCAAAAATAATT 58.315 30.769 5.01 0.00 0.00 1.40
530 531 7.821846 TGGTTCAATACAGGCCAAAAATAATTC 59.178 33.333 5.01 0.00 0.00 2.17
531 532 7.010091 GGTTCAATACAGGCCAAAAATAATTCG 59.990 37.037 5.01 0.00 0.00 3.34
532 533 7.397892 TCAATACAGGCCAAAAATAATTCGA 57.602 32.000 5.01 0.00 0.00 3.71
535 536 9.743057 CAATACAGGCCAAAAATAATTCGAATA 57.257 29.630 11.83 0.48 0.00 1.75
536 537 9.744468 AATACAGGCCAAAAATAATTCGAATAC 57.256 29.630 11.83 0.00 0.00 1.89
537 538 7.164230 ACAGGCCAAAAATAATTCGAATACA 57.836 32.000 11.83 2.82 0.00 2.29
538 539 7.257722 ACAGGCCAAAAATAATTCGAATACAG 58.742 34.615 11.83 0.00 0.00 2.74
539 540 6.198966 CAGGCCAAAAATAATTCGAATACAGC 59.801 38.462 11.83 6.23 0.00 4.40
540 541 6.096846 AGGCCAAAAATAATTCGAATACAGCT 59.903 34.615 11.83 0.00 0.00 4.24
541 542 7.284489 AGGCCAAAAATAATTCGAATACAGCTA 59.716 33.333 11.83 0.00 0.00 3.32
569 2745 1.308069 TAACCTCGTACGCTCGCCTT 61.308 55.000 11.24 0.00 0.00 4.35
634 2819 4.012895 CGACCACACAAGCACGGC 62.013 66.667 0.00 0.00 0.00 5.68
702 2891 1.910276 GCTCCCTGGGCTTGCTTTT 60.910 57.895 8.22 0.00 0.00 2.27
703 2892 1.475169 GCTCCCTGGGCTTGCTTTTT 61.475 55.000 8.22 0.00 0.00 1.94
721 2910 5.408604 GCTTTTTCTAATTCTCAGGTCGTCA 59.591 40.000 0.00 0.00 0.00 4.35
725 2914 5.661056 TCTAATTCTCAGGTCGTCATGTT 57.339 39.130 0.00 0.00 0.00 2.71
781 2970 1.600636 CCTTCAAGGGCACGCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
1098 3287 0.036388 CGCTCAACTTCAAGGGCCTA 60.036 55.000 6.41 0.00 0.00 3.93
1203 3393 2.750807 GCTCATCCACAATGGTATGCCT 60.751 50.000 0.16 0.00 39.03 4.75
1316 3506 2.512896 GGCTCGATTCTGGGCCAT 59.487 61.111 6.72 0.00 43.59 4.40
1327 3517 1.138859 TCTGGGCCATCTACATTGACG 59.861 52.381 6.72 0.00 0.00 4.35
1378 3568 3.364167 GGTGCACGTGCGAGTTTTATTAA 60.364 43.478 33.22 10.34 45.83 1.40
1488 3686 2.363306 TGTTTGTGGGCAAGACAGAT 57.637 45.000 0.00 0.00 35.82 2.90
1511 3709 5.527026 AAGGAGAAAGATGAAGGGACAAT 57.473 39.130 0.00 0.00 0.00 2.71
1678 3876 3.169908 TGTGGTGTGGAGCTTCTACATA 58.830 45.455 0.00 0.00 39.99 2.29
1698 3896 0.895530 CCACCAAGACTCCGCTTCTA 59.104 55.000 0.00 0.00 0.00 2.10
1699 3897 1.482593 CCACCAAGACTCCGCTTCTAT 59.517 52.381 0.00 0.00 0.00 1.98
1909 4111 8.802856 CGAATACTATTGTTCTTTCTCTCACAG 58.197 37.037 0.00 0.00 0.00 3.66
2403 5394 0.393077 ACACTTGGTGGAAGAGGTCG 59.607 55.000 2.75 0.00 37.94 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.433239 TCTCTCCCAATTTACTACGCCC 59.567 50.000 0.00 0.00 0.00 6.13
1 2 3.814005 TCTCTCCCAATTTACTACGCC 57.186 47.619 0.00 0.00 0.00 5.68
2 3 4.745620 GTCATCTCTCCCAATTTACTACGC 59.254 45.833 0.00 0.00 0.00 4.42
3 4 5.902681 TGTCATCTCTCCCAATTTACTACG 58.097 41.667 0.00 0.00 0.00 3.51
5 6 6.098409 GTCCTGTCATCTCTCCCAATTTACTA 59.902 42.308 0.00 0.00 0.00 1.82
7 8 5.119694 GTCCTGTCATCTCTCCCAATTTAC 58.880 45.833 0.00 0.00 0.00 2.01
8 9 4.141937 CGTCCTGTCATCTCTCCCAATTTA 60.142 45.833 0.00 0.00 0.00 1.40
9 10 3.369892 CGTCCTGTCATCTCTCCCAATTT 60.370 47.826 0.00 0.00 0.00 1.82
10 11 2.169352 CGTCCTGTCATCTCTCCCAATT 59.831 50.000 0.00 0.00 0.00 2.32
11 12 1.759445 CGTCCTGTCATCTCTCCCAAT 59.241 52.381 0.00 0.00 0.00 3.16
12 13 1.186200 CGTCCTGTCATCTCTCCCAA 58.814 55.000 0.00 0.00 0.00 4.12
13 14 0.684479 CCGTCCTGTCATCTCTCCCA 60.684 60.000 0.00 0.00 0.00 4.37
14 15 1.395826 CCCGTCCTGTCATCTCTCCC 61.396 65.000 0.00 0.00 0.00 4.30
15 16 1.395826 CCCCGTCCTGTCATCTCTCC 61.396 65.000 0.00 0.00 0.00 3.71
16 17 0.395862 TCCCCGTCCTGTCATCTCTC 60.396 60.000 0.00 0.00 0.00 3.20
17 18 0.041238 TTCCCCGTCCTGTCATCTCT 59.959 55.000 0.00 0.00 0.00 3.10
18 19 0.902531 TTTCCCCGTCCTGTCATCTC 59.097 55.000 0.00 0.00 0.00 2.75
19 20 1.279271 CTTTTCCCCGTCCTGTCATCT 59.721 52.381 0.00 0.00 0.00 2.90
21 22 1.064825 ACTTTTCCCCGTCCTGTCAT 58.935 50.000 0.00 0.00 0.00 3.06
22 23 1.719529 TACTTTTCCCCGTCCTGTCA 58.280 50.000 0.00 0.00 0.00 3.58
23 24 2.845363 TTACTTTTCCCCGTCCTGTC 57.155 50.000 0.00 0.00 0.00 3.51
24 25 2.812983 GCTTTACTTTTCCCCGTCCTGT 60.813 50.000 0.00 0.00 0.00 4.00
25 26 1.810755 GCTTTACTTTTCCCCGTCCTG 59.189 52.381 0.00 0.00 0.00 3.86
26 27 1.422402 TGCTTTACTTTTCCCCGTCCT 59.578 47.619 0.00 0.00 0.00 3.85
27 28 1.538512 GTGCTTTACTTTTCCCCGTCC 59.461 52.381 0.00 0.00 0.00 4.79
29 30 1.232119 CGTGCTTTACTTTTCCCCGT 58.768 50.000 0.00 0.00 0.00 5.28
31 32 1.612676 ACCGTGCTTTACTTTTCCCC 58.387 50.000 0.00 0.00 0.00 4.81
32 33 3.058708 GTGTACCGTGCTTTACTTTTCCC 60.059 47.826 0.00 0.00 0.00 3.97
33 34 3.363280 CGTGTACCGTGCTTTACTTTTCC 60.363 47.826 0.00 0.00 0.00 3.13
35 36 3.245990 GTCGTGTACCGTGCTTTACTTTT 59.754 43.478 4.11 0.00 37.94 2.27
36 37 2.796593 GTCGTGTACCGTGCTTTACTTT 59.203 45.455 4.11 0.00 37.94 2.66
38 39 1.664016 CGTCGTGTACCGTGCTTTACT 60.664 52.381 4.11 0.00 37.94 2.24
39 40 0.704551 CGTCGTGTACCGTGCTTTAC 59.295 55.000 4.11 0.00 37.94 2.01
40 41 1.003262 GCGTCGTGTACCGTGCTTTA 61.003 55.000 12.48 0.00 36.54 1.85
41 42 2.305127 GCGTCGTGTACCGTGCTTT 61.305 57.895 12.48 0.00 36.54 3.51
42 43 2.732094 GCGTCGTGTACCGTGCTT 60.732 61.111 12.48 0.00 36.54 3.91
43 44 1.925415 TATGCGTCGTGTACCGTGCT 61.925 55.000 16.99 10.07 38.93 4.40
44 45 1.469126 CTATGCGTCGTGTACCGTGC 61.469 60.000 12.70 12.70 38.74 5.34
45 46 1.469126 GCTATGCGTCGTGTACCGTG 61.469 60.000 0.00 0.88 37.94 4.94
48 49 0.179145 ACAGCTATGCGTCGTGTACC 60.179 55.000 0.00 0.00 0.00 3.34
49 50 2.107178 GTACAGCTATGCGTCGTGTAC 58.893 52.381 8.72 8.72 37.42 2.90
50 51 1.064505 GGTACAGCTATGCGTCGTGTA 59.935 52.381 0.00 0.00 0.00 2.90
51 52 0.179145 GGTACAGCTATGCGTCGTGT 60.179 55.000 0.00 0.00 0.00 4.49
52 53 0.179148 TGGTACAGCTATGCGTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
55 56 1.560923 CAGTGGTACAGCTATGCGTC 58.439 55.000 0.00 0.00 41.80 5.19
57 58 0.530650 CCCAGTGGTACAGCTATGCG 60.531 60.000 8.74 0.00 41.80 4.73
58 59 0.815615 GCCCAGTGGTACAGCTATGC 60.816 60.000 8.74 0.00 41.80 3.14
59 60 0.530650 CGCCCAGTGGTACAGCTATG 60.531 60.000 8.74 0.00 41.80 2.23
60 61 1.823295 CGCCCAGTGGTACAGCTAT 59.177 57.895 8.74 0.00 41.80 2.97
61 62 3.014085 GCGCCCAGTGGTACAGCTA 62.014 63.158 8.74 0.00 41.80 3.32
62 63 4.394712 GCGCCCAGTGGTACAGCT 62.395 66.667 8.74 0.00 41.80 4.24
76 77 4.615815 ATGGAGAGATGCCCGCGC 62.616 66.667 0.00 0.00 0.00 6.86
77 78 2.664185 CATGGAGAGATGCCCGCG 60.664 66.667 0.00 0.00 0.00 6.46
78 79 2.976903 GCATGGAGAGATGCCCGC 60.977 66.667 0.00 0.00 42.57 6.13
79 80 1.890979 GTGCATGGAGAGATGCCCG 60.891 63.158 0.00 0.00 46.98 6.13
80 81 0.178998 ATGTGCATGGAGAGATGCCC 60.179 55.000 0.00 0.00 46.98 5.36
83 84 5.938710 AGCTTAATATGTGCATGGAGAGATG 59.061 40.000 0.00 0.00 0.00 2.90
84 85 5.938710 CAGCTTAATATGTGCATGGAGAGAT 59.061 40.000 0.00 0.00 0.00 2.75
85 86 5.070847 TCAGCTTAATATGTGCATGGAGAGA 59.929 40.000 0.00 0.00 0.00 3.10
86 87 5.303165 TCAGCTTAATATGTGCATGGAGAG 58.697 41.667 0.00 0.00 0.00 3.20
88 89 6.349115 GGAATCAGCTTAATATGTGCATGGAG 60.349 42.308 0.00 0.00 0.00 3.86
89 90 5.474532 GGAATCAGCTTAATATGTGCATGGA 59.525 40.000 0.00 0.00 0.00 3.41
90 91 5.336213 GGGAATCAGCTTAATATGTGCATGG 60.336 44.000 0.00 0.00 0.00 3.66
91 92 5.475909 AGGGAATCAGCTTAATATGTGCATG 59.524 40.000 0.00 0.00 0.00 4.06
93 94 4.823442 CAGGGAATCAGCTTAATATGTGCA 59.177 41.667 0.00 0.00 0.00 4.57
94 95 5.065914 TCAGGGAATCAGCTTAATATGTGC 58.934 41.667 0.00 0.00 0.00 4.57
95 96 6.543465 TGTTCAGGGAATCAGCTTAATATGTG 59.457 38.462 0.00 0.00 0.00 3.21
96 97 6.662755 TGTTCAGGGAATCAGCTTAATATGT 58.337 36.000 0.00 0.00 0.00 2.29
97 98 6.994496 TCTGTTCAGGGAATCAGCTTAATATG 59.006 38.462 0.00 0.00 0.00 1.78
98 99 7.141758 TCTGTTCAGGGAATCAGCTTAATAT 57.858 36.000 0.00 0.00 0.00 1.28
99 100 6.560003 TCTGTTCAGGGAATCAGCTTAATA 57.440 37.500 0.00 0.00 0.00 0.98
100 101 5.441718 TCTGTTCAGGGAATCAGCTTAAT 57.558 39.130 0.00 0.00 0.00 1.40
102 103 4.225942 ACATCTGTTCAGGGAATCAGCTTA 59.774 41.667 0.00 0.00 0.00 3.09
103 104 3.009916 ACATCTGTTCAGGGAATCAGCTT 59.990 43.478 0.00 0.00 0.00 3.74
105 106 2.996631 ACATCTGTTCAGGGAATCAGC 58.003 47.619 0.00 0.00 0.00 4.26
106 107 5.089970 TGTACATCTGTTCAGGGAATCAG 57.910 43.478 0.00 0.00 0.00 2.90
107 108 5.189539 TCATGTACATCTGTTCAGGGAATCA 59.810 40.000 5.07 0.00 30.05 2.57
109 110 5.698741 TCATGTACATCTGTTCAGGGAAT 57.301 39.130 5.07 0.00 30.05 3.01
110 111 5.221823 TGTTCATGTACATCTGTTCAGGGAA 60.222 40.000 5.07 0.46 30.05 3.97
111 112 4.285775 TGTTCATGTACATCTGTTCAGGGA 59.714 41.667 5.07 0.00 30.05 4.20
112 113 4.578871 TGTTCATGTACATCTGTTCAGGG 58.421 43.478 5.07 0.00 30.05 4.45
113 114 5.876460 TCATGTTCATGTACATCTGTTCAGG 59.124 40.000 14.38 3.81 36.64 3.86
114 115 6.454715 CGTCATGTTCATGTACATCTGTTCAG 60.455 42.308 14.38 3.25 36.64 3.02
115 116 5.348451 CGTCATGTTCATGTACATCTGTTCA 59.652 40.000 14.38 2.20 36.64 3.18
116 117 5.576774 TCGTCATGTTCATGTACATCTGTTC 59.423 40.000 14.38 5.05 36.64 3.18
117 118 5.348724 GTCGTCATGTTCATGTACATCTGTT 59.651 40.000 14.38 0.00 36.64 3.16
118 119 4.864806 GTCGTCATGTTCATGTACATCTGT 59.135 41.667 14.38 0.00 36.64 3.41
119 120 4.027377 CGTCGTCATGTTCATGTACATCTG 60.027 45.833 14.38 7.27 36.64 2.90
120 121 4.105486 CGTCGTCATGTTCATGTACATCT 58.895 43.478 14.38 0.00 36.64 2.90
121 122 3.857665 ACGTCGTCATGTTCATGTACATC 59.142 43.478 14.38 4.83 36.64 3.06
124 125 2.344441 CCACGTCGTCATGTTCATGTAC 59.656 50.000 11.73 0.00 0.00 2.90
125 126 2.601804 CCACGTCGTCATGTTCATGTA 58.398 47.619 11.73 0.00 0.00 2.29
126 127 1.428448 CCACGTCGTCATGTTCATGT 58.572 50.000 11.73 0.00 0.00 3.21
128 129 1.351430 CGCCACGTCGTCATGTTCAT 61.351 55.000 0.00 0.00 0.00 2.57
130 131 2.019951 ACGCCACGTCGTCATGTTC 61.020 57.895 0.00 0.00 38.44 3.18
131 132 2.028484 ACGCCACGTCGTCATGTT 59.972 55.556 0.00 0.00 38.44 2.71
132 133 2.486636 ATCACGCCACGTCGTCATGT 62.487 55.000 0.00 0.00 41.21 3.21
133 134 1.351430 AATCACGCCACGTCGTCATG 61.351 55.000 0.00 0.00 41.21 3.07
134 135 0.171679 TAATCACGCCACGTCGTCAT 59.828 50.000 0.00 0.00 41.21 3.06
135 136 0.730155 GTAATCACGCCACGTCGTCA 60.730 55.000 0.00 0.00 41.21 4.35
137 138 0.804364 TAGTAATCACGCCACGTCGT 59.196 50.000 0.00 0.00 44.35 4.34
138 139 1.186030 GTAGTAATCACGCCACGTCG 58.814 55.000 0.00 0.00 38.32 5.12
140 141 1.542915 ACAGTAGTAATCACGCCACGT 59.457 47.619 0.00 0.00 42.36 4.49
141 142 2.273370 ACAGTAGTAATCACGCCACG 57.727 50.000 0.00 0.00 0.00 4.94
142 143 5.808540 TCATTTACAGTAGTAATCACGCCAC 59.191 40.000 0.00 0.00 39.78 5.01
143 144 5.968254 TCATTTACAGTAGTAATCACGCCA 58.032 37.500 0.00 0.00 39.78 5.69
144 145 8.485591 GTTATCATTTACAGTAGTAATCACGCC 58.514 37.037 0.00 0.00 39.78 5.68
145 146 9.027129 TGTTATCATTTACAGTAGTAATCACGC 57.973 33.333 0.00 0.00 39.78 5.34
152 153 9.366216 CAAGCAGTGTTATCATTTACAGTAGTA 57.634 33.333 0.00 0.00 0.00 1.82
154 155 8.479313 TCAAGCAGTGTTATCATTTACAGTAG 57.521 34.615 0.00 0.00 0.00 2.57
155 156 9.098355 GATCAAGCAGTGTTATCATTTACAGTA 57.902 33.333 0.00 0.00 0.00 2.74
158 159 7.280876 GGAGATCAAGCAGTGTTATCATTTACA 59.719 37.037 0.00 0.00 0.00 2.41
159 160 7.254932 GGGAGATCAAGCAGTGTTATCATTTAC 60.255 40.741 0.00 0.00 0.00 2.01
160 161 6.767902 GGGAGATCAAGCAGTGTTATCATTTA 59.232 38.462 0.00 0.00 0.00 1.40
162 163 5.128919 GGGAGATCAAGCAGTGTTATCATT 58.871 41.667 0.00 0.00 0.00 2.57
163 164 4.445448 GGGGAGATCAAGCAGTGTTATCAT 60.445 45.833 0.00 0.00 0.00 2.45
165 166 3.471680 GGGGAGATCAAGCAGTGTTATC 58.528 50.000 0.00 0.00 0.00 1.75
166 167 2.158900 CGGGGAGATCAAGCAGTGTTAT 60.159 50.000 0.00 0.00 0.00 1.89
167 168 1.207089 CGGGGAGATCAAGCAGTGTTA 59.793 52.381 0.00 0.00 0.00 2.41
168 169 0.036010 CGGGGAGATCAAGCAGTGTT 60.036 55.000 0.00 0.00 0.00 3.32
169 170 0.904865 TCGGGGAGATCAAGCAGTGT 60.905 55.000 0.00 0.00 0.00 3.55
173 174 1.203237 TGAATCGGGGAGATCAAGCA 58.797 50.000 0.00 0.00 38.98 3.91
174 175 1.943340 GTTGAATCGGGGAGATCAAGC 59.057 52.381 0.00 0.00 38.98 4.01
175 176 2.939103 GTGTTGAATCGGGGAGATCAAG 59.061 50.000 0.00 0.00 38.98 3.02
176 177 2.304470 TGTGTTGAATCGGGGAGATCAA 59.696 45.455 0.00 0.00 38.98 2.57
178 179 2.691409 TGTGTTGAATCGGGGAGATC 57.309 50.000 0.00 0.00 38.98 2.75
179 180 3.054434 TGATTGTGTTGAATCGGGGAGAT 60.054 43.478 0.00 0.00 42.43 2.75
182 183 2.432444 GTGATTGTGTTGAATCGGGGA 58.568 47.619 0.00 0.00 35.43 4.81
184 185 1.465689 GCGTGATTGTGTTGAATCGGG 60.466 52.381 0.00 0.00 35.43 5.14
186 187 2.592796 TGCGTGATTGTGTTGAATCG 57.407 45.000 0.00 0.00 35.43 3.34
189 190 1.336125 TGCATGCGTGATTGTGTTGAA 59.664 42.857 14.09 0.00 0.00 2.69
190 191 0.950116 TGCATGCGTGATTGTGTTGA 59.050 45.000 14.09 0.00 0.00 3.18
191 192 1.333115 CTGCATGCGTGATTGTGTTG 58.667 50.000 14.09 0.00 0.00 3.33
192 193 0.387622 GCTGCATGCGTGATTGTGTT 60.388 50.000 14.09 0.00 0.00 3.32
193 194 1.210931 GCTGCATGCGTGATTGTGT 59.789 52.632 14.09 0.00 0.00 3.72
194 195 4.066769 GCTGCATGCGTGATTGTG 57.933 55.556 14.09 0.00 0.00 3.33
203 204 2.359848 TGATTTCACCATAGCTGCATGC 59.640 45.455 11.82 11.82 43.29 4.06
204 205 4.642445 TTGATTTCACCATAGCTGCATG 57.358 40.909 1.02 3.85 0.00 4.06
208 209 7.092137 TCTCATTTTGATTTCACCATAGCTG 57.908 36.000 0.00 0.00 0.00 4.24
209 210 7.613022 TCTTCTCATTTTGATTTCACCATAGCT 59.387 33.333 0.00 0.00 0.00 3.32
210 211 7.765307 TCTTCTCATTTTGATTTCACCATAGC 58.235 34.615 0.00 0.00 0.00 2.97
212 213 7.613022 AGCTCTTCTCATTTTGATTTCACCATA 59.387 33.333 0.00 0.00 0.00 2.74
213 214 6.436532 AGCTCTTCTCATTTTGATTTCACCAT 59.563 34.615 0.00 0.00 0.00 3.55
216 217 9.852091 AATAAGCTCTTCTCATTTTGATTTCAC 57.148 29.630 0.00 0.00 0.00 3.18
217 218 9.850628 CAATAAGCTCTTCTCATTTTGATTTCA 57.149 29.630 0.00 0.00 0.00 2.69
218 219 9.852091 ACAATAAGCTCTTCTCATTTTGATTTC 57.148 29.630 0.00 0.00 0.00 2.17
224 225 9.994432 CGATAAACAATAAGCTCTTCTCATTTT 57.006 29.630 0.00 0.00 0.00 1.82
225 226 8.616076 CCGATAAACAATAAGCTCTTCTCATTT 58.384 33.333 0.00 0.00 0.00 2.32
226 227 7.770897 ACCGATAAACAATAAGCTCTTCTCATT 59.229 33.333 0.00 0.00 0.00 2.57
227 228 7.275920 ACCGATAAACAATAAGCTCTTCTCAT 58.724 34.615 0.00 0.00 0.00 2.90
230 231 7.923414 AAACCGATAAACAATAAGCTCTTCT 57.077 32.000 0.00 0.00 0.00 2.85
231 232 8.234546 TCAAAACCGATAAACAATAAGCTCTTC 58.765 33.333 0.00 0.00 0.00 2.87
232 233 8.106247 TCAAAACCGATAAACAATAAGCTCTT 57.894 30.769 0.00 0.00 0.00 2.85
234 235 8.181573 TGATCAAAACCGATAAACAATAAGCTC 58.818 33.333 0.00 0.00 0.00 4.09
235 236 7.968405 GTGATCAAAACCGATAAACAATAAGCT 59.032 33.333 0.00 0.00 0.00 3.74
236 237 7.753132 TGTGATCAAAACCGATAAACAATAAGC 59.247 33.333 0.00 0.00 0.00 3.09
237 238 9.061610 GTGTGATCAAAACCGATAAACAATAAG 57.938 33.333 0.00 0.00 0.00 1.73
238 239 8.024285 GGTGTGATCAAAACCGATAAACAATAA 58.976 33.333 11.93 0.00 0.00 1.40
239 240 7.362229 GGGTGTGATCAAAACCGATAAACAATA 60.362 37.037 18.17 0.00 34.62 1.90
240 241 6.386654 GGTGTGATCAAAACCGATAAACAAT 58.613 36.000 11.93 0.00 0.00 2.71
244 245 3.437395 CGGGTGTGATCAAAACCGATAAA 59.563 43.478 34.77 0.00 38.77 1.40
245 246 3.004171 CGGGTGTGATCAAAACCGATAA 58.996 45.455 34.77 0.00 38.77 1.75
247 248 1.271163 ACGGGTGTGATCAAAACCGAT 60.271 47.619 42.03 25.86 39.31 4.18
248 249 0.107081 ACGGGTGTGATCAAAACCGA 59.893 50.000 42.03 0.00 39.31 4.69
249 250 2.624169 ACGGGTGTGATCAAAACCG 58.376 52.632 35.75 35.75 40.69 4.44
259 260 0.318614 GCAAATTGTCCACGGGTGTG 60.319 55.000 0.00 0.00 46.00 3.82
260 261 0.467290 AGCAAATTGTCCACGGGTGT 60.467 50.000 0.00 0.00 0.00 4.16
261 262 0.039256 CAGCAAATTGTCCACGGGTG 60.039 55.000 0.00 0.00 0.00 4.61
263 264 1.178534 ACCAGCAAATTGTCCACGGG 61.179 55.000 0.00 0.00 0.00 5.28
264 265 0.039256 CACCAGCAAATTGTCCACGG 60.039 55.000 0.00 0.00 0.00 4.94
265 266 0.950836 TCACCAGCAAATTGTCCACG 59.049 50.000 0.00 0.00 0.00 4.94
267 268 3.640498 TGATTTCACCAGCAAATTGTCCA 59.360 39.130 0.00 0.00 0.00 4.02
268 269 4.255833 TGATTTCACCAGCAAATTGTCC 57.744 40.909 0.00 0.00 0.00 4.02
269 270 5.523188 TGTTTGATTTCACCAGCAAATTGTC 59.477 36.000 0.00 0.00 33.43 3.18
270 271 5.426504 TGTTTGATTTCACCAGCAAATTGT 58.573 33.333 0.00 0.00 33.43 2.71
271 272 5.987777 TGTTTGATTTCACCAGCAAATTG 57.012 34.783 0.00 0.00 33.43 2.32
272 273 6.289834 TGATGTTTGATTTCACCAGCAAATT 58.710 32.000 0.00 0.00 33.43 1.82
273 274 5.856156 TGATGTTTGATTTCACCAGCAAAT 58.144 33.333 0.00 0.00 33.43 2.32
274 275 5.273674 TGATGTTTGATTTCACCAGCAAA 57.726 34.783 0.00 0.00 0.00 3.68
275 276 4.933505 TGATGTTTGATTTCACCAGCAA 57.066 36.364 0.00 0.00 0.00 3.91
276 277 6.778834 ATATGATGTTTGATTTCACCAGCA 57.221 33.333 0.00 1.36 31.11 4.41
277 278 9.585099 TTTAATATGATGTTTGATTTCACCAGC 57.415 29.630 0.00 0.00 0.00 4.85
299 300 8.584157 AGCAACAATATCTTTGGTCATGTTTAA 58.416 29.630 0.00 0.00 0.00 1.52
300 301 8.121305 AGCAACAATATCTTTGGTCATGTTTA 57.879 30.769 0.00 0.00 0.00 2.01
301 302 6.996509 AGCAACAATATCTTTGGTCATGTTT 58.003 32.000 0.00 0.00 0.00 2.83
302 303 6.594788 AGCAACAATATCTTTGGTCATGTT 57.405 33.333 0.00 0.00 0.00 2.71
303 304 6.392354 CAAGCAACAATATCTTTGGTCATGT 58.608 36.000 0.00 0.00 32.36 3.21
304 305 5.290158 GCAAGCAACAATATCTTTGGTCATG 59.710 40.000 2.42 0.00 32.36 3.07
305 306 5.186409 AGCAAGCAACAATATCTTTGGTCAT 59.814 36.000 0.00 0.00 32.36 3.06
308 309 5.473066 AAGCAAGCAACAATATCTTTGGT 57.527 34.783 0.00 0.00 34.97 3.67
309 310 6.624423 ACTAAGCAAGCAACAATATCTTTGG 58.376 36.000 0.00 0.00 0.00 3.28
310 311 8.454106 AGTACTAAGCAAGCAACAATATCTTTG 58.546 33.333 0.00 0.00 0.00 2.77
312 313 8.567285 AAGTACTAAGCAAGCAACAATATCTT 57.433 30.769 0.00 0.00 0.00 2.40
313 314 9.667107 TTAAGTACTAAGCAAGCAACAATATCT 57.333 29.630 0.00 0.00 0.00 1.98
316 317 9.887406 GTTTTAAGTACTAAGCAAGCAACAATA 57.113 29.630 0.00 0.00 0.00 1.90
317 318 7.589954 CGTTTTAAGTACTAAGCAAGCAACAAT 59.410 33.333 0.00 0.00 0.00 2.71
318 319 6.908284 CGTTTTAAGTACTAAGCAAGCAACAA 59.092 34.615 0.00 0.00 0.00 2.83
319 320 6.423862 CGTTTTAAGTACTAAGCAAGCAACA 58.576 36.000 0.00 0.00 0.00 3.33
320 321 5.338822 GCGTTTTAAGTACTAAGCAAGCAAC 59.661 40.000 0.00 0.00 0.00 4.17
322 323 4.753107 AGCGTTTTAAGTACTAAGCAAGCA 59.247 37.500 0.00 0.00 0.00 3.91
323 324 5.278964 AGCGTTTTAAGTACTAAGCAAGC 57.721 39.130 0.00 0.00 0.00 4.01
324 325 7.903431 CCATTAGCGTTTTAAGTACTAAGCAAG 59.097 37.037 0.00 0.00 0.00 4.01
325 326 7.388500 ACCATTAGCGTTTTAAGTACTAAGCAA 59.612 33.333 0.00 0.00 0.00 3.91
326 327 6.875195 ACCATTAGCGTTTTAAGTACTAAGCA 59.125 34.615 0.00 0.00 0.00 3.91
327 328 7.063780 TCACCATTAGCGTTTTAAGTACTAAGC 59.936 37.037 0.00 0.00 0.00 3.09
328 329 8.470040 TCACCATTAGCGTTTTAAGTACTAAG 57.530 34.615 0.00 0.00 0.00 2.18
331 332 6.128742 CGTTCACCATTAGCGTTTTAAGTACT 60.129 38.462 0.00 0.00 0.00 2.73
333 334 5.389725 GCGTTCACCATTAGCGTTTTAAGTA 60.390 40.000 0.00 0.00 0.00 2.24
336 337 3.499157 AGCGTTCACCATTAGCGTTTTAA 59.501 39.130 0.00 0.00 0.00 1.52
337 338 3.068560 AGCGTTCACCATTAGCGTTTTA 58.931 40.909 0.00 0.00 0.00 1.52
340 341 1.076332 GAGCGTTCACCATTAGCGTT 58.924 50.000 0.00 0.00 0.00 4.84
342 343 0.460284 AGGAGCGTTCACCATTAGCG 60.460 55.000 0.53 0.00 0.00 4.26
343 344 1.291132 GAGGAGCGTTCACCATTAGC 58.709 55.000 0.53 0.00 0.00 3.09
344 345 1.802880 CGGAGGAGCGTTCACCATTAG 60.803 57.143 13.08 0.00 0.00 1.73
345 346 0.174845 CGGAGGAGCGTTCACCATTA 59.825 55.000 13.08 0.00 0.00 1.90
347 348 2.283529 ACGGAGGAGCGTTCACCAT 61.284 57.895 13.08 0.00 0.00 3.55
350 351 3.112709 GCACGGAGGAGCGTTCAC 61.113 66.667 0.53 0.00 0.00 3.18
351 352 2.765250 GAAGCACGGAGGAGCGTTCA 62.765 60.000 0.53 0.00 37.72 3.18
352 353 2.048127 AAGCACGGAGGAGCGTTC 60.048 61.111 0.00 0.00 37.72 3.95
353 354 2.048127 GAAGCACGGAGGAGCGTT 60.048 61.111 0.00 0.00 37.72 4.84
354 355 4.421479 CGAAGCACGGAGGAGCGT 62.421 66.667 0.00 0.00 37.72 5.07
372 373 2.280524 TGGACCGTTTGCGTCCAG 60.281 61.111 5.59 0.00 40.55 3.86
373 374 2.589442 GTGGACCGTTTGCGTCCA 60.589 61.111 5.59 5.59 41.94 4.02
374 375 3.708734 CGTGGACCGTTTGCGTCC 61.709 66.667 0.00 0.00 38.15 4.79
387 388 2.182614 CTGGCAAAAGGCGTACGTGG 62.183 60.000 17.90 0.00 46.16 4.94
388 389 1.206578 CTGGCAAAAGGCGTACGTG 59.793 57.895 17.90 7.80 46.16 4.49
389 390 2.613506 GCTGGCAAAAGGCGTACGT 61.614 57.895 17.90 0.00 46.16 3.57
390 391 2.175811 GCTGGCAAAAGGCGTACG 59.824 61.111 11.84 11.84 46.16 3.67
394 395 2.125832 CATGGCTGGCAAAAGGCG 60.126 61.111 8.35 0.00 45.39 5.52
395 396 2.435410 GCATGGCTGGCAAAAGGC 60.435 61.111 8.35 6.40 42.86 4.35
396 397 0.742990 CATGCATGGCTGGCAAAAGG 60.743 55.000 19.40 0.00 45.60 3.11
397 398 1.366111 GCATGCATGGCTGGCAAAAG 61.366 55.000 27.34 2.62 45.60 2.27
398 399 1.376166 GCATGCATGGCTGGCAAAA 60.376 52.632 27.34 0.00 45.60 2.44
399 400 2.266372 GCATGCATGGCTGGCAAA 59.734 55.556 27.34 0.00 45.60 3.68
400 401 2.997897 TGCATGCATGGCTGGCAA 60.998 55.556 27.34 1.94 45.60 4.52
401 402 3.765578 GTGCATGCATGGCTGGCA 61.766 61.111 25.64 16.11 46.66 4.92
403 404 2.494445 CTGTGCATGCATGGCTGG 59.506 61.111 25.64 6.87 0.00 4.85
406 407 1.434696 GTACCTGTGCATGCATGGC 59.565 57.895 30.30 19.18 0.00 4.40
407 408 1.026182 ACGTACCTGTGCATGCATGG 61.026 55.000 29.36 29.36 0.00 3.66
408 409 1.327460 GTACGTACCTGTGCATGCATG 59.673 52.381 25.64 22.70 0.00 4.06
409 410 1.066502 TGTACGTACCTGTGCATGCAT 60.067 47.619 25.64 10.48 29.14 3.96
412 413 1.852280 CGATGTACGTACCTGTGCATG 59.148 52.381 22.43 0.00 43.80 4.06
413 414 1.202371 CCGATGTACGTACCTGTGCAT 60.202 52.381 22.43 8.44 45.95 3.96
414 415 0.171679 CCGATGTACGTACCTGTGCA 59.828 55.000 22.43 3.48 38.82 4.57
415 416 1.143969 GCCGATGTACGTACCTGTGC 61.144 60.000 22.43 15.61 40.78 4.57
416 417 0.526954 GGCCGATGTACGTACCTGTG 60.527 60.000 22.43 10.10 40.78 3.66
417 418 1.669999 GGGCCGATGTACGTACCTGT 61.670 60.000 22.43 8.99 40.78 4.00
418 419 1.066918 GGGCCGATGTACGTACCTG 59.933 63.158 22.43 11.83 40.78 4.00
419 420 0.757935 ATGGGCCGATGTACGTACCT 60.758 55.000 22.43 13.31 40.78 3.08
420 421 0.599204 CATGGGCCGATGTACGTACC 60.599 60.000 22.43 7.53 40.78 3.34
421 422 1.219522 GCATGGGCCGATGTACGTAC 61.220 60.000 26.28 18.90 40.78 3.67
422 423 1.068417 GCATGGGCCGATGTACGTA 59.932 57.895 26.28 0.00 40.78 3.57
423 424 2.203015 GCATGGGCCGATGTACGT 60.203 61.111 26.28 0.00 40.78 3.57
425 426 0.882042 CAGAGCATGGGCCGATGTAC 60.882 60.000 26.28 19.79 42.56 2.90
426 427 1.447217 CAGAGCATGGGCCGATGTA 59.553 57.895 26.28 0.00 42.56 2.29
427 428 2.191375 CAGAGCATGGGCCGATGT 59.809 61.111 26.28 14.60 42.56 3.06
428 429 3.285215 GCAGAGCATGGGCCGATG 61.285 66.667 22.46 22.46 42.56 3.84
429 430 4.923942 CGCAGAGCATGGGCCGAT 62.924 66.667 0.00 0.00 42.56 4.18
431 432 4.529219 TACGCAGAGCATGGGCCG 62.529 66.667 0.00 0.00 45.49 6.13
432 433 2.897350 GTACGCAGAGCATGGGCC 60.897 66.667 0.00 0.00 45.49 5.80
433 434 2.125147 TGTACGCAGAGCATGGGC 60.125 61.111 6.00 0.00 45.49 5.36
434 435 2.167219 CGTGTACGCAGAGCATGGG 61.167 63.158 7.29 4.71 46.92 4.00
435 436 1.413767 GACGTGTACGCAGAGCATGG 61.414 60.000 7.29 0.00 44.43 3.66
437 438 0.456824 CTGACGTGTACGCAGAGCAT 60.457 55.000 17.64 0.00 42.05 3.79
438 439 1.081442 CTGACGTGTACGCAGAGCA 60.081 57.895 17.64 0.00 42.05 4.26
439 440 0.179161 ATCTGACGTGTACGCAGAGC 60.179 55.000 24.23 6.39 46.65 4.09
440 441 1.539341 CATCTGACGTGTACGCAGAG 58.461 55.000 24.23 16.98 46.65 3.35
443 444 1.445410 GGCATCTGACGTGTACGCA 60.445 57.895 7.29 3.21 44.43 5.24
444 445 1.153823 AGGCATCTGACGTGTACGC 60.154 57.895 4.06 0.00 44.43 4.42
445 446 0.109272 ACAGGCATCTGACGTGTACG 60.109 55.000 0.00 2.43 43.49 3.67
447 448 3.086282 TCTTACAGGCATCTGACGTGTA 58.914 45.455 0.00 0.00 43.49 2.90
448 449 1.893137 TCTTACAGGCATCTGACGTGT 59.107 47.619 0.00 0.00 43.49 4.49
449 450 2.654749 TCTTACAGGCATCTGACGTG 57.345 50.000 0.00 0.00 43.49 4.49
450 451 2.739932 GCATCTTACAGGCATCTGACGT 60.740 50.000 0.00 0.00 43.49 4.34
452 453 2.158842 AGGCATCTTACAGGCATCTGAC 60.159 50.000 0.00 0.00 43.49 3.51
456 457 1.602311 CCAGGCATCTTACAGGCATC 58.398 55.000 0.00 0.00 0.00 3.91
457 458 0.184451 CCCAGGCATCTTACAGGCAT 59.816 55.000 0.00 0.00 0.00 4.40
458 459 1.207488 ACCCAGGCATCTTACAGGCA 61.207 55.000 0.00 0.00 0.00 4.75
459 460 0.464554 GACCCAGGCATCTTACAGGC 60.465 60.000 0.00 0.00 0.00 4.85
460 461 0.181350 GGACCCAGGCATCTTACAGG 59.819 60.000 0.00 0.00 0.00 4.00
461 462 1.207791 AGGACCCAGGCATCTTACAG 58.792 55.000 0.00 0.00 0.00 2.74
462 463 1.668826 AAGGACCCAGGCATCTTACA 58.331 50.000 0.00 0.00 0.00 2.41
463 464 2.755103 CAAAAGGACCCAGGCATCTTAC 59.245 50.000 0.00 0.00 0.00 2.34
464 465 2.883888 GCAAAAGGACCCAGGCATCTTA 60.884 50.000 0.00 0.00 0.00 2.10
465 466 1.928868 CAAAAGGACCCAGGCATCTT 58.071 50.000 0.00 0.00 0.00 2.40
466 467 0.613012 GCAAAAGGACCCAGGCATCT 60.613 55.000 0.00 0.00 0.00 2.90
467 468 0.899717 TGCAAAAGGACCCAGGCATC 60.900 55.000 0.00 0.00 0.00 3.91
468 469 0.252375 ATGCAAAAGGACCCAGGCAT 60.252 50.000 0.00 5.07 37.17 4.40
469 470 1.155859 ATGCAAAAGGACCCAGGCA 59.844 52.632 0.00 0.00 35.54 4.75
470 471 1.187567 ACATGCAAAAGGACCCAGGC 61.188 55.000 0.00 0.00 0.00 4.85
471 472 0.604578 CACATGCAAAAGGACCCAGG 59.395 55.000 0.00 0.00 0.00 4.45
472 473 0.037975 GCACATGCAAAAGGACCCAG 60.038 55.000 0.00 0.00 41.59 4.45
473 474 1.804396 CGCACATGCAAAAGGACCCA 61.804 55.000 4.49 0.00 42.21 4.51
474 475 1.080569 CGCACATGCAAAAGGACCC 60.081 57.895 4.49 0.00 42.21 4.46
475 476 0.664166 CACGCACATGCAAAAGGACC 60.664 55.000 4.49 0.00 42.21 4.46
477 478 1.659233 CCACGCACATGCAAAAGGA 59.341 52.632 4.49 0.00 42.21 3.36
478 479 1.373246 CCCACGCACATGCAAAAGG 60.373 57.895 4.49 0.00 42.21 3.11
479 480 2.023223 GCCCACGCACATGCAAAAG 61.023 57.895 4.49 0.00 42.21 2.27
481 482 3.988525 GGCCCACGCACATGCAAA 61.989 61.111 4.49 0.00 42.21 3.68
494 495 2.265467 TATTGAACCAGCGAGGGCCC 62.265 60.000 16.46 16.46 43.89 5.80
497 498 1.656652 CTGTATTGAACCAGCGAGGG 58.343 55.000 3.26 0.00 43.89 4.30
498 499 1.656652 CCTGTATTGAACCAGCGAGG 58.343 55.000 0.00 0.00 45.67 4.63
501 502 0.676466 TGGCCTGTATTGAACCAGCG 60.676 55.000 3.32 0.00 0.00 5.18
503 504 4.599047 TTTTTGGCCTGTATTGAACCAG 57.401 40.909 3.32 0.00 0.00 4.00
504 505 6.672266 TTATTTTTGGCCTGTATTGAACCA 57.328 33.333 3.32 0.00 0.00 3.67
505 506 7.010091 CGAATTATTTTTGGCCTGTATTGAACC 59.990 37.037 3.32 0.00 0.00 3.62
506 507 7.757624 TCGAATTATTTTTGGCCTGTATTGAAC 59.242 33.333 3.32 0.00 0.00 3.18
507 508 7.831753 TCGAATTATTTTTGGCCTGTATTGAA 58.168 30.769 3.32 0.00 0.00 2.69
508 509 7.397892 TCGAATTATTTTTGGCCTGTATTGA 57.602 32.000 3.32 0.00 0.00 2.57
509 510 8.647143 ATTCGAATTATTTTTGGCCTGTATTG 57.353 30.769 4.39 0.00 0.00 1.90
510 511 9.744468 GTATTCGAATTATTTTTGGCCTGTATT 57.256 29.630 17.19 0.00 0.00 1.89
511 512 8.908903 TGTATTCGAATTATTTTTGGCCTGTAT 58.091 29.630 17.19 0.00 0.00 2.29
513 514 7.164230 TGTATTCGAATTATTTTTGGCCTGT 57.836 32.000 17.19 0.00 0.00 4.00
514 515 6.198966 GCTGTATTCGAATTATTTTTGGCCTG 59.801 38.462 17.19 0.00 0.00 4.85
516 517 6.273071 AGCTGTATTCGAATTATTTTTGGCC 58.727 36.000 17.19 0.00 0.00 5.36
517 518 9.118236 GATAGCTGTATTCGAATTATTTTTGGC 57.882 33.333 17.19 9.52 0.00 4.52
528 529 9.431887 GGTTATAAATGGATAGCTGTATTCGAA 57.568 33.333 0.00 0.00 0.00 3.71
529 530 8.812972 AGGTTATAAATGGATAGCTGTATTCGA 58.187 33.333 0.00 0.00 0.00 3.71
530 531 9.088512 GAGGTTATAAATGGATAGCTGTATTCG 57.911 37.037 0.00 0.00 0.00 3.34
531 532 9.088512 CGAGGTTATAAATGGATAGCTGTATTC 57.911 37.037 0.00 0.00 0.00 1.75
532 533 8.594550 ACGAGGTTATAAATGGATAGCTGTATT 58.405 33.333 0.00 0.00 0.00 1.89
535 536 6.420913 ACGAGGTTATAAATGGATAGCTGT 57.579 37.500 0.00 0.00 0.00 4.40
536 537 6.527023 CGTACGAGGTTATAAATGGATAGCTG 59.473 42.308 10.44 0.00 0.00 4.24
537 538 6.618811 CGTACGAGGTTATAAATGGATAGCT 58.381 40.000 10.44 0.00 0.00 3.32
538 539 5.287992 GCGTACGAGGTTATAAATGGATAGC 59.712 44.000 21.65 0.00 0.00 2.97
539 540 6.618811 AGCGTACGAGGTTATAAATGGATAG 58.381 40.000 21.65 0.00 0.00 2.08
540 541 6.579666 AGCGTACGAGGTTATAAATGGATA 57.420 37.500 21.65 0.00 0.00 2.59
541 542 5.464030 AGCGTACGAGGTTATAAATGGAT 57.536 39.130 21.65 0.00 0.00 3.41
552 2728 2.539263 GAAAGGCGAGCGTACGAGGT 62.539 60.000 21.65 1.53 35.09 3.85
569 2745 2.173758 TAGGCGCATGGACGGTTGAA 62.174 55.000 10.83 0.00 0.00 2.69
634 2819 6.074642 CACGTAGATTTGAGCTCGTATCTAG 58.925 44.000 25.92 22.08 32.04 2.43
702 2891 5.661056 ACATGACGACCTGAGAATTAGAA 57.339 39.130 0.00 0.00 0.00 2.10
703 2892 5.410924 CAACATGACGACCTGAGAATTAGA 58.589 41.667 0.00 0.00 0.00 2.10
721 2910 2.569657 CGTGCATGCTGCCAACAT 59.430 55.556 20.33 0.00 44.23 2.71
781 2970 2.494471 TCACCGACGTCAAGGAATACAT 59.506 45.455 17.16 0.00 0.00 2.29
1098 3287 4.163839 TCCTCTTCCTAGTACTCGTAGCTT 59.836 45.833 0.00 0.00 0.00 3.74
1151 3341 0.306533 CTTGTTCACCGGGTTTGACG 59.693 55.000 6.32 0.00 0.00 4.35
1218 3408 4.827284 TCATCGATGTACTCCAAGATAGCA 59.173 41.667 24.09 0.00 0.00 3.49
1316 3506 4.594123 TGAACCTTGTCGTCAATGTAGA 57.406 40.909 4.06 0.00 32.79 2.59
1488 3686 6.418101 CATTGTCCCTTCATCTTTCTCCTTA 58.582 40.000 0.00 0.00 0.00 2.69
1678 3876 1.122019 AGAAGCGGAGTCTTGGTGGT 61.122 55.000 0.00 0.00 0.00 4.16
1698 3896 2.198287 GCGCTCCATCCATGCCAAT 61.198 57.895 0.00 0.00 0.00 3.16
1699 3897 2.829914 GCGCTCCATCCATGCCAA 60.830 61.111 0.00 0.00 0.00 4.52
1909 4111 3.050619 CTCTACGTTGTCACAACAGACC 58.949 50.000 20.58 0.00 37.73 3.85
2403 5394 5.219987 GCTAACGATAAGCGATATCCGTTTC 60.220 44.000 16.59 8.62 44.57 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.