Multiple sequence alignment - TraesCS6B01G429500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G429500 chr6B 100.000 3062 0 0 1 3062 697467709 697464648 0.000000e+00 5655.0
1 TraesCS6B01G429500 chr6B 99.421 1208 3 3 1856 3062 697538293 697537089 0.000000e+00 2189.0
2 TraesCS6B01G429500 chr6B 99.097 886 8 0 975 1860 697540910 697540025 0.000000e+00 1592.0
3 TraesCS6B01G429500 chr6B 98.817 507 6 0 4 510 210273731 210273225 0.000000e+00 904.0
4 TraesCS6B01G429500 chr6B 98.431 510 8 0 1 510 704877644 704877135 0.000000e+00 898.0
5 TraesCS6B01G429500 chr6A 95.714 1190 48 2 975 2164 605043528 605044714 0.000000e+00 1912.0
6 TraesCS6B01G429500 chr6A 87.621 412 37 9 2654 3061 605049525 605049926 1.660000e-127 466.0
7 TraesCS6B01G429500 chr6A 89.701 301 17 5 2180 2480 605044701 605044987 3.730000e-99 372.0
8 TraesCS6B01G429500 chr6A 90.625 128 11 1 2543 2669 605044988 605045115 5.250000e-38 169.0
9 TraesCS6B01G429500 chr6A 96.774 62 2 0 841 902 605053633 605053694 1.500000e-18 104.0
10 TraesCS6B01G429500 chr7B 98.824 510 6 0 1 510 448656517 448656008 0.000000e+00 909.0
11 TraesCS6B01G429500 chr7D 98.627 510 7 0 1 510 418952076 418951567 0.000000e+00 904.0
12 TraesCS6B01G429500 chr7D 98.235 510 9 0 1 510 562127172 562127681 0.000000e+00 893.0
13 TraesCS6B01G429500 chr7D 98.039 510 10 0 1 510 491880421 491879912 0.000000e+00 887.0
14 TraesCS6B01G429500 chr7D 80.000 90 17 1 2339 2427 554319005 554318916 7.090000e-07 65.8
15 TraesCS6B01G429500 chr3D 98.627 510 7 0 1 510 607832729 607833238 0.000000e+00 904.0
16 TraesCS6B01G429500 chr2B 98.431 510 8 0 1 510 632590758 632591267 0.000000e+00 898.0
17 TraesCS6B01G429500 chr5D 98.235 510 9 0 1 510 303831882 303831373 0.000000e+00 893.0
18 TraesCS6B01G429500 chr5D 79.327 208 37 5 2311 2514 297985291 297985496 1.140000e-29 141.0
19 TraesCS6B01G429500 chr6D 87.027 185 18 2 1958 2140 458534114 458533934 1.440000e-48 204.0
20 TraesCS6B01G429500 chr3B 83.673 98 13 3 2331 2427 497713420 497713515 4.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G429500 chr6B 697464648 697467709 3061 True 5655.000000 5655 100.000000 1 3062 1 chr6B.!!$R2 3061
1 TraesCS6B01G429500 chr6B 697537089 697540910 3821 True 1890.500000 2189 99.259000 975 3062 2 chr6B.!!$R4 2087
2 TraesCS6B01G429500 chr6B 210273225 210273731 506 True 904.000000 904 98.817000 4 510 1 chr6B.!!$R1 506
3 TraesCS6B01G429500 chr6B 704877135 704877644 509 True 898.000000 898 98.431000 1 510 1 chr6B.!!$R3 509
4 TraesCS6B01G429500 chr6A 605043528 605045115 1587 False 817.666667 1912 92.013333 975 2669 3 chr6A.!!$F1 1694
5 TraesCS6B01G429500 chr6A 605049525 605053694 4169 False 285.000000 466 92.197500 841 3061 2 chr6A.!!$F2 2220
6 TraesCS6B01G429500 chr7B 448656008 448656517 509 True 909.000000 909 98.824000 1 510 1 chr7B.!!$R1 509
7 TraesCS6B01G429500 chr7D 418951567 418952076 509 True 904.000000 904 98.627000 1 510 1 chr7D.!!$R1 509
8 TraesCS6B01G429500 chr7D 562127172 562127681 509 False 893.000000 893 98.235000 1 510 1 chr7D.!!$F1 509
9 TraesCS6B01G429500 chr7D 491879912 491880421 509 True 887.000000 887 98.039000 1 510 1 chr7D.!!$R2 509
10 TraesCS6B01G429500 chr3D 607832729 607833238 509 False 904.000000 904 98.627000 1 510 1 chr3D.!!$F1 509
11 TraesCS6B01G429500 chr2B 632590758 632591267 509 False 898.000000 898 98.431000 1 510 1 chr2B.!!$F1 509
12 TraesCS6B01G429500 chr5D 303831373 303831882 509 True 893.000000 893 98.235000 1 510 1 chr5D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 732 0.03759 TACACAGGGAATGGTGCACC 59.962 55.0 29.67 29.67 38.57 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 3906 5.124036 AGAATCCGATTTATTCCCCACAA 57.876 39.13 0.0 0.0 34.5 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 1.877443 GTGGTTTGTATGACAAGCGGT 59.123 47.619 0.95 0.00 39.74 5.68
414 415 1.000506 GGAAGTTAGTGCACAGACCGA 59.999 52.381 21.04 0.00 0.00 4.69
510 511 1.093159 ATCGTCCGCGTAAAGAGAGT 58.907 50.000 4.92 0.00 39.49 3.24
511 512 0.877071 TCGTCCGCGTAAAGAGAGTT 59.123 50.000 4.92 0.00 39.49 3.01
512 513 1.267806 TCGTCCGCGTAAAGAGAGTTT 59.732 47.619 4.92 0.00 39.49 2.66
513 514 2.483877 TCGTCCGCGTAAAGAGAGTTTA 59.516 45.455 4.92 0.00 39.49 2.01
514 515 2.844804 CGTCCGCGTAAAGAGAGTTTAG 59.155 50.000 4.92 0.00 0.00 1.85
515 516 3.177487 GTCCGCGTAAAGAGAGTTTAGG 58.823 50.000 4.92 0.00 0.00 2.69
516 517 1.925185 CCGCGTAAAGAGAGTTTAGGC 59.075 52.381 4.92 10.64 40.39 3.93
517 518 2.602878 CGCGTAAAGAGAGTTTAGGCA 58.397 47.619 17.48 0.00 42.51 4.75
518 519 2.991190 CGCGTAAAGAGAGTTTAGGCAA 59.009 45.455 17.48 0.00 42.51 4.52
519 520 3.181533 CGCGTAAAGAGAGTTTAGGCAAC 60.182 47.826 17.48 0.00 42.51 4.17
520 521 3.124806 GCGTAAAGAGAGTTTAGGCAACC 59.875 47.826 14.22 0.00 42.18 3.77
521 522 4.566987 CGTAAAGAGAGTTTAGGCAACCT 58.433 43.478 0.00 0.00 35.77 3.50
522 523 4.995487 CGTAAAGAGAGTTTAGGCAACCTT 59.005 41.667 0.00 0.00 35.77 3.50
523 524 5.469084 CGTAAAGAGAGTTTAGGCAACCTTT 59.531 40.000 0.00 0.00 35.77 3.11
524 525 6.647895 CGTAAAGAGAGTTTAGGCAACCTTTA 59.352 38.462 0.00 0.00 35.77 1.85
525 526 6.879276 AAAGAGAGTTTAGGCAACCTTTAC 57.121 37.500 0.00 0.00 35.77 2.01
526 527 4.907809 AGAGAGTTTAGGCAACCTTTACC 58.092 43.478 0.00 0.00 35.77 2.85
527 528 4.597940 AGAGAGTTTAGGCAACCTTTACCT 59.402 41.667 0.00 0.00 35.77 3.08
528 529 4.652822 AGAGTTTAGGCAACCTTTACCTG 58.347 43.478 0.00 0.00 35.77 4.00
529 530 3.154710 AGTTTAGGCAACCTTTACCTGC 58.845 45.455 0.00 0.00 35.77 4.85
530 531 2.888414 GTTTAGGCAACCTTTACCTGCA 59.112 45.455 0.00 0.00 37.83 4.41
531 532 2.194201 TAGGCAACCTTTACCTGCAC 57.806 50.000 0.00 0.00 37.83 4.57
532 533 0.539669 AGGCAACCTTTACCTGCACC 60.540 55.000 0.00 0.00 37.83 5.01
533 534 1.532604 GGCAACCTTTACCTGCACCC 61.533 60.000 0.00 0.00 37.83 4.61
534 535 1.862602 GCAACCTTTACCTGCACCCG 61.863 60.000 0.00 0.00 36.09 5.28
535 536 0.250553 CAACCTTTACCTGCACCCGA 60.251 55.000 0.00 0.00 0.00 5.14
536 537 0.475044 AACCTTTACCTGCACCCGAA 59.525 50.000 0.00 0.00 0.00 4.30
537 538 0.696501 ACCTTTACCTGCACCCGAAT 59.303 50.000 0.00 0.00 0.00 3.34
538 539 1.339727 ACCTTTACCTGCACCCGAATC 60.340 52.381 0.00 0.00 0.00 2.52
539 540 1.379527 CTTTACCTGCACCCGAATCC 58.620 55.000 0.00 0.00 0.00 3.01
540 541 0.693622 TTTACCTGCACCCGAATCCA 59.306 50.000 0.00 0.00 0.00 3.41
541 542 0.251916 TTACCTGCACCCGAATCCAG 59.748 55.000 0.00 0.00 0.00 3.86
542 543 0.907704 TACCTGCACCCGAATCCAGT 60.908 55.000 0.00 0.00 0.00 4.00
543 544 1.746615 CCTGCACCCGAATCCAGTG 60.747 63.158 0.00 0.00 34.58 3.66
544 545 1.746615 CTGCACCCGAATCCAGTGG 60.747 63.158 1.40 1.40 32.05 4.00
545 546 2.184020 CTGCACCCGAATCCAGTGGA 62.184 60.000 15.88 15.88 35.55 4.02
546 547 1.224592 GCACCCGAATCCAGTGGAT 59.775 57.895 19.53 19.53 45.46 3.41
547 548 1.097547 GCACCCGAATCCAGTGGATG 61.098 60.000 25.51 14.81 42.27 3.51
548 549 1.097547 CACCCGAATCCAGTGGATGC 61.098 60.000 25.51 22.33 42.27 3.91
549 550 1.224315 CCCGAATCCAGTGGATGCA 59.776 57.895 26.94 0.45 42.27 3.96
550 551 0.394216 CCCGAATCCAGTGGATGCAA 60.394 55.000 26.94 0.04 42.27 4.08
551 552 1.683943 CCGAATCCAGTGGATGCAAT 58.316 50.000 26.94 12.00 42.27 3.56
552 553 1.335810 CCGAATCCAGTGGATGCAATG 59.664 52.381 26.94 12.68 42.27 2.82
553 554 2.019249 CGAATCCAGTGGATGCAATGT 58.981 47.619 26.94 10.91 42.27 2.71
554 555 2.424601 CGAATCCAGTGGATGCAATGTT 59.575 45.455 26.94 10.94 42.27 2.71
555 556 3.732774 CGAATCCAGTGGATGCAATGTTG 60.733 47.826 26.94 10.82 42.27 3.33
556 557 2.583024 TCCAGTGGATGCAATGTTGA 57.417 45.000 8.12 1.88 0.00 3.18
557 558 2.439409 TCCAGTGGATGCAATGTTGAG 58.561 47.619 8.12 0.00 0.00 3.02
558 559 1.475280 CCAGTGGATGCAATGTTGAGG 59.525 52.381 13.67 0.00 0.00 3.86
559 560 1.135199 CAGTGGATGCAATGTTGAGGC 60.135 52.381 6.49 0.00 0.00 4.70
560 561 0.889994 GTGGATGCAATGTTGAGGCA 59.110 50.000 0.00 0.00 42.43 4.75
561 562 1.273048 GTGGATGCAATGTTGAGGCAA 59.727 47.619 0.00 0.00 41.43 4.52
562 563 1.273048 TGGATGCAATGTTGAGGCAAC 59.727 47.619 0.00 3.47 43.78 4.17
571 572 1.463674 GTTGAGGCAACATAGGTGGG 58.536 55.000 5.49 0.00 43.09 4.61
572 573 1.004277 GTTGAGGCAACATAGGTGGGA 59.996 52.381 5.49 0.00 43.09 4.37
573 574 1.595311 TGAGGCAACATAGGTGGGAT 58.405 50.000 0.00 0.00 41.41 3.85
574 575 1.212688 TGAGGCAACATAGGTGGGATG 59.787 52.381 0.00 0.00 41.41 3.51
575 576 0.106519 AGGCAACATAGGTGGGATGC 60.107 55.000 0.00 0.00 41.41 3.91
576 577 1.109323 GGCAACATAGGTGGGATGCC 61.109 60.000 5.29 5.29 42.40 4.40
577 578 0.395586 GCAACATAGGTGGGATGCCA 60.396 55.000 0.00 0.00 31.48 4.92
578 579 1.755265 GCAACATAGGTGGGATGCCAT 60.755 52.381 10.01 0.00 31.48 4.40
579 580 1.958579 CAACATAGGTGGGATGCCATG 59.041 52.381 10.01 6.09 0.00 3.66
580 581 1.225373 ACATAGGTGGGATGCCATGT 58.775 50.000 10.01 6.83 0.00 3.21
581 582 1.570501 ACATAGGTGGGATGCCATGTT 59.429 47.619 10.01 0.49 29.80 2.71
582 583 2.233271 CATAGGTGGGATGCCATGTTC 58.767 52.381 10.01 0.00 0.00 3.18
583 584 1.294041 TAGGTGGGATGCCATGTTCA 58.706 50.000 10.01 0.00 0.00 3.18
584 585 0.409092 AGGTGGGATGCCATGTTCAA 59.591 50.000 10.01 0.00 0.00 2.69
585 586 1.203162 AGGTGGGATGCCATGTTCAAA 60.203 47.619 10.01 0.00 0.00 2.69
586 587 1.832998 GGTGGGATGCCATGTTCAAAT 59.167 47.619 10.01 0.00 0.00 2.32
587 588 3.030291 GGTGGGATGCCATGTTCAAATA 58.970 45.455 10.01 0.00 0.00 1.40
588 589 3.450457 GGTGGGATGCCATGTTCAAATAA 59.550 43.478 10.01 0.00 0.00 1.40
589 590 4.081198 GGTGGGATGCCATGTTCAAATAAA 60.081 41.667 10.01 0.00 0.00 1.40
590 591 5.111293 GTGGGATGCCATGTTCAAATAAAG 58.889 41.667 10.01 0.00 0.00 1.85
591 592 4.161942 TGGGATGCCATGTTCAAATAAAGG 59.838 41.667 0.00 0.00 0.00 3.11
592 593 4.443315 GGGATGCCATGTTCAAATAAAGGG 60.443 45.833 0.00 0.00 0.00 3.95
593 594 3.608316 TGCCATGTTCAAATAAAGGGC 57.392 42.857 0.00 0.00 40.51 5.19
594 595 2.902486 TGCCATGTTCAAATAAAGGGCA 59.098 40.909 0.00 0.00 46.95 5.36
595 596 3.518705 TGCCATGTTCAAATAAAGGGCAT 59.481 39.130 0.00 0.00 44.54 4.40
596 597 3.872771 GCCATGTTCAAATAAAGGGCATG 59.127 43.478 0.00 0.00 39.88 4.06
597 598 4.382901 GCCATGTTCAAATAAAGGGCATGA 60.383 41.667 0.00 0.00 39.88 3.07
598 599 5.732633 CCATGTTCAAATAAAGGGCATGAA 58.267 37.500 0.00 0.00 35.58 2.57
599 600 5.581874 CCATGTTCAAATAAAGGGCATGAAC 59.418 40.000 0.00 9.37 46.20 3.18
600 601 6.400568 CATGTTCAAATAAAGGGCATGAACT 58.599 36.000 15.40 0.00 46.18 3.01
601 602 6.418057 TGTTCAAATAAAGGGCATGAACTT 57.582 33.333 15.40 0.00 46.18 2.66
602 603 7.531857 TGTTCAAATAAAGGGCATGAACTTA 57.468 32.000 15.40 0.00 46.18 2.24
603 604 8.133024 TGTTCAAATAAAGGGCATGAACTTAT 57.867 30.769 15.40 0.00 46.18 1.73
604 605 8.592809 TGTTCAAATAAAGGGCATGAACTTATT 58.407 29.630 15.40 0.00 46.18 1.40
605 606 8.872845 GTTCAAATAAAGGGCATGAACTTATTG 58.127 33.333 0.00 6.71 43.93 1.90
606 607 7.555087 TCAAATAAAGGGCATGAACTTATTGG 58.445 34.615 0.00 0.00 0.00 3.16
607 608 6.484364 AATAAAGGGCATGAACTTATTGGG 57.516 37.500 0.00 0.00 0.00 4.12
608 609 2.459555 AGGGCATGAACTTATTGGGG 57.540 50.000 0.00 0.00 0.00 4.96
609 610 1.645919 AGGGCATGAACTTATTGGGGT 59.354 47.619 0.00 0.00 0.00 4.95
610 611 2.031870 GGGCATGAACTTATTGGGGTC 58.968 52.381 0.00 0.00 0.00 4.46
611 612 2.358195 GGGCATGAACTTATTGGGGTCT 60.358 50.000 0.00 0.00 0.00 3.85
612 613 2.952310 GGCATGAACTTATTGGGGTCTC 59.048 50.000 0.00 0.00 0.00 3.36
613 614 2.614057 GCATGAACTTATTGGGGTCTCG 59.386 50.000 0.00 0.00 0.00 4.04
614 615 3.681594 GCATGAACTTATTGGGGTCTCGA 60.682 47.826 0.00 0.00 0.00 4.04
615 616 3.887621 TGAACTTATTGGGGTCTCGAG 57.112 47.619 5.93 5.93 0.00 4.04
616 617 3.170717 TGAACTTATTGGGGTCTCGAGT 58.829 45.455 13.13 0.00 0.00 4.18
617 618 3.194968 TGAACTTATTGGGGTCTCGAGTC 59.805 47.826 13.13 6.74 0.00 3.36
618 619 2.816411 ACTTATTGGGGTCTCGAGTCA 58.184 47.619 13.13 4.52 0.00 3.41
619 620 3.375699 ACTTATTGGGGTCTCGAGTCAT 58.624 45.455 13.13 0.00 0.00 3.06
620 621 3.133003 ACTTATTGGGGTCTCGAGTCATG 59.867 47.826 13.13 0.00 0.00 3.07
621 622 1.866015 ATTGGGGTCTCGAGTCATGA 58.134 50.000 13.13 0.00 0.00 3.07
622 623 1.866015 TTGGGGTCTCGAGTCATGAT 58.134 50.000 13.13 0.00 0.00 2.45
623 624 1.866015 TGGGGTCTCGAGTCATGATT 58.134 50.000 13.13 0.00 0.00 2.57
624 625 3.026707 TGGGGTCTCGAGTCATGATTA 57.973 47.619 13.13 0.00 0.00 1.75
625 626 3.576861 TGGGGTCTCGAGTCATGATTAT 58.423 45.455 13.13 0.00 0.00 1.28
626 627 3.967326 TGGGGTCTCGAGTCATGATTATT 59.033 43.478 13.13 0.00 0.00 1.40
627 628 5.144832 TGGGGTCTCGAGTCATGATTATTA 58.855 41.667 13.13 0.00 0.00 0.98
628 629 5.243954 TGGGGTCTCGAGTCATGATTATTAG 59.756 44.000 13.13 0.00 0.00 1.73
629 630 5.336849 GGGGTCTCGAGTCATGATTATTAGG 60.337 48.000 13.13 0.00 0.00 2.69
630 631 5.477291 GGGTCTCGAGTCATGATTATTAGGA 59.523 44.000 13.13 0.00 0.00 2.94
631 632 6.153680 GGGTCTCGAGTCATGATTATTAGGAT 59.846 42.308 13.13 0.00 0.00 3.24
632 633 7.032580 GGTCTCGAGTCATGATTATTAGGATG 58.967 42.308 13.13 0.00 0.00 3.51
633 634 7.032580 GTCTCGAGTCATGATTATTAGGATGG 58.967 42.308 13.13 0.00 0.00 3.51
634 635 6.948309 TCTCGAGTCATGATTATTAGGATGGA 59.052 38.462 13.13 0.00 0.00 3.41
635 636 7.451566 TCTCGAGTCATGATTATTAGGATGGAA 59.548 37.037 13.13 0.00 0.00 3.53
636 637 7.606349 TCGAGTCATGATTATTAGGATGGAAG 58.394 38.462 0.00 0.00 0.00 3.46
637 638 6.312426 CGAGTCATGATTATTAGGATGGAAGC 59.688 42.308 0.00 0.00 0.00 3.86
638 639 6.169094 AGTCATGATTATTAGGATGGAAGCG 58.831 40.000 0.00 0.00 0.00 4.68
639 640 5.934625 GTCATGATTATTAGGATGGAAGCGT 59.065 40.000 0.00 0.00 0.00 5.07
640 641 6.091441 GTCATGATTATTAGGATGGAAGCGTC 59.909 42.308 0.00 0.00 0.00 5.19
641 642 5.545063 TGATTATTAGGATGGAAGCGTCA 57.455 39.130 1.14 0.00 0.00 4.35
642 643 5.924356 TGATTATTAGGATGGAAGCGTCAA 58.076 37.500 1.14 0.00 0.00 3.18
643 644 5.991606 TGATTATTAGGATGGAAGCGTCAAG 59.008 40.000 1.14 0.00 0.00 3.02
653 654 3.870606 GCGTCAAGCGTGTGGTAT 58.129 55.556 0.00 0.00 43.66 2.73
654 655 2.159181 GCGTCAAGCGTGTGGTATT 58.841 52.632 0.00 0.00 43.66 1.89
655 656 0.094730 GCGTCAAGCGTGTGGTATTC 59.905 55.000 0.00 0.00 43.66 1.75
656 657 1.710013 CGTCAAGCGTGTGGTATTCT 58.290 50.000 0.00 0.00 35.54 2.40
657 658 2.066262 CGTCAAGCGTGTGGTATTCTT 58.934 47.619 0.00 0.00 35.54 2.52
658 659 2.478894 CGTCAAGCGTGTGGTATTCTTT 59.521 45.455 0.00 0.00 35.54 2.52
659 660 3.059188 CGTCAAGCGTGTGGTATTCTTTT 60.059 43.478 0.00 0.00 35.54 2.27
660 661 4.464112 GTCAAGCGTGTGGTATTCTTTTC 58.536 43.478 0.00 0.00 0.00 2.29
661 662 4.213482 GTCAAGCGTGTGGTATTCTTTTCT 59.787 41.667 0.00 0.00 0.00 2.52
662 663 4.819630 TCAAGCGTGTGGTATTCTTTTCTT 59.180 37.500 0.00 0.00 0.00 2.52
663 664 5.298276 TCAAGCGTGTGGTATTCTTTTCTTT 59.702 36.000 0.00 0.00 0.00 2.52
664 665 5.108385 AGCGTGTGGTATTCTTTTCTTTG 57.892 39.130 0.00 0.00 0.00 2.77
665 666 4.578928 AGCGTGTGGTATTCTTTTCTTTGT 59.421 37.500 0.00 0.00 0.00 2.83
666 667 5.067283 AGCGTGTGGTATTCTTTTCTTTGTT 59.933 36.000 0.00 0.00 0.00 2.83
667 668 5.173131 GCGTGTGGTATTCTTTTCTTTGTTG 59.827 40.000 0.00 0.00 0.00 3.33
668 669 5.173131 CGTGTGGTATTCTTTTCTTTGTTGC 59.827 40.000 0.00 0.00 0.00 4.17
669 670 6.039616 GTGTGGTATTCTTTTCTTTGTTGCA 58.960 36.000 0.00 0.00 0.00 4.08
670 671 6.198966 GTGTGGTATTCTTTTCTTTGTTGCAG 59.801 38.462 0.00 0.00 0.00 4.41
671 672 5.175673 GTGGTATTCTTTTCTTTGTTGCAGC 59.824 40.000 0.00 0.00 0.00 5.25
672 673 4.382754 GGTATTCTTTTCTTTGTTGCAGCG 59.617 41.667 0.00 0.00 0.00 5.18
673 674 1.838913 TCTTTTCTTTGTTGCAGCGC 58.161 45.000 0.00 0.00 0.00 5.92
674 675 1.133982 TCTTTTCTTTGTTGCAGCGCA 59.866 42.857 11.47 0.00 36.47 6.09
675 676 1.256117 CTTTTCTTTGTTGCAGCGCAC 59.744 47.619 11.47 0.68 38.71 5.34
676 677 0.172127 TTTCTTTGTTGCAGCGCACA 59.828 45.000 11.47 4.16 38.71 4.57
677 678 0.248580 TTCTTTGTTGCAGCGCACAG 60.249 50.000 11.47 0.00 38.71 3.66
678 679 1.094650 TCTTTGTTGCAGCGCACAGA 61.095 50.000 11.47 0.00 38.71 3.41
679 680 0.039798 CTTTGTTGCAGCGCACAGAT 60.040 50.000 11.47 0.00 38.71 2.90
680 681 0.385029 TTTGTTGCAGCGCACAGATT 59.615 45.000 11.47 0.00 38.71 2.40
681 682 0.040157 TTGTTGCAGCGCACAGATTC 60.040 50.000 11.47 0.71 38.71 2.52
682 683 0.886043 TGTTGCAGCGCACAGATTCT 60.886 50.000 11.47 0.00 38.71 2.40
683 684 0.239347 GTTGCAGCGCACAGATTCTT 59.761 50.000 11.47 0.00 38.71 2.52
684 685 0.953727 TTGCAGCGCACAGATTCTTT 59.046 45.000 11.47 0.00 38.71 2.52
685 686 0.953727 TGCAGCGCACAGATTCTTTT 59.046 45.000 11.47 0.00 31.71 2.27
686 687 1.334054 GCAGCGCACAGATTCTTTTG 58.666 50.000 11.47 0.00 0.00 2.44
687 688 1.334054 CAGCGCACAGATTCTTTTGC 58.666 50.000 11.47 6.88 0.00 3.68
688 689 1.068748 CAGCGCACAGATTCTTTTGCT 60.069 47.619 11.47 5.04 32.56 3.91
689 690 2.160219 CAGCGCACAGATTCTTTTGCTA 59.840 45.455 11.47 0.00 32.56 3.49
690 691 2.417933 AGCGCACAGATTCTTTTGCTAG 59.582 45.455 11.47 0.00 32.56 3.42
691 692 2.160417 GCGCACAGATTCTTTTGCTAGT 59.840 45.455 0.30 0.00 32.56 2.57
692 693 3.740590 CGCACAGATTCTTTTGCTAGTG 58.259 45.455 12.87 5.06 32.56 2.74
693 694 3.433274 CGCACAGATTCTTTTGCTAGTGA 59.567 43.478 12.87 0.00 32.56 3.41
694 695 4.083855 CGCACAGATTCTTTTGCTAGTGAA 60.084 41.667 12.87 0.00 32.56 3.18
695 696 5.391310 CGCACAGATTCTTTTGCTAGTGAAT 60.391 40.000 12.87 0.00 32.56 2.57
696 697 6.183360 CGCACAGATTCTTTTGCTAGTGAATA 60.183 38.462 12.87 0.00 32.56 1.75
697 698 6.963805 GCACAGATTCTTTTGCTAGTGAATAC 59.036 38.462 9.02 0.00 32.00 1.89
698 699 7.361201 GCACAGATTCTTTTGCTAGTGAATACA 60.361 37.037 9.02 0.00 32.00 2.29
699 700 7.959651 CACAGATTCTTTTGCTAGTGAATACAC 59.040 37.037 0.00 0.00 46.24 2.90
728 729 3.275617 TGTATACACAGGGAATGGTGC 57.724 47.619 0.08 0.00 38.57 5.01
729 730 2.573915 TGTATACACAGGGAATGGTGCA 59.426 45.455 0.08 0.00 38.57 4.57
730 731 2.128771 ATACACAGGGAATGGTGCAC 57.871 50.000 8.80 8.80 38.57 4.57
731 732 0.037590 TACACAGGGAATGGTGCACC 59.962 55.000 29.67 29.67 38.57 5.01
747 748 2.532531 CACCAGATGCACAAATCGTC 57.467 50.000 0.00 0.00 0.00 4.20
748 749 1.131126 CACCAGATGCACAAATCGTCC 59.869 52.381 0.00 0.00 0.00 4.79
749 750 1.271325 ACCAGATGCACAAATCGTCCA 60.271 47.619 0.00 0.00 0.00 4.02
750 751 2.019249 CCAGATGCACAAATCGTCCAT 58.981 47.619 0.00 0.00 0.00 3.41
751 752 2.223409 CCAGATGCACAAATCGTCCATG 60.223 50.000 0.00 0.00 0.00 3.66
752 753 2.421073 CAGATGCACAAATCGTCCATGT 59.579 45.455 0.00 0.00 0.00 3.21
753 754 2.421073 AGATGCACAAATCGTCCATGTG 59.579 45.455 0.00 0.97 45.54 3.21
754 755 0.880441 TGCACAAATCGTCCATGTGG 59.120 50.000 7.19 0.00 43.54 4.17
755 756 0.881118 GCACAAATCGTCCATGTGGT 59.119 50.000 7.19 0.00 43.54 4.16
756 757 2.080693 GCACAAATCGTCCATGTGGTA 58.919 47.619 7.19 0.00 43.54 3.25
757 758 2.486203 GCACAAATCGTCCATGTGGTAA 59.514 45.455 7.19 0.00 43.54 2.85
758 759 3.426159 GCACAAATCGTCCATGTGGTAAG 60.426 47.826 7.19 0.00 43.54 2.34
759 760 2.747446 ACAAATCGTCCATGTGGTAAGC 59.253 45.455 0.00 0.00 36.34 3.09
760 761 2.746904 CAAATCGTCCATGTGGTAAGCA 59.253 45.455 0.00 0.00 36.34 3.91
761 762 2.779755 ATCGTCCATGTGGTAAGCAA 57.220 45.000 0.00 0.00 36.34 3.91
762 763 1.803334 TCGTCCATGTGGTAAGCAAC 58.197 50.000 0.00 0.00 36.34 4.17
794 795 9.910267 AAAAACGTTATTATAGGGTGGATACTT 57.090 29.630 0.00 0.00 37.61 2.24
795 796 8.897872 AAACGTTATTATAGGGTGGATACTTG 57.102 34.615 0.00 0.00 37.61 3.16
796 797 7.844493 ACGTTATTATAGGGTGGATACTTGA 57.156 36.000 0.00 0.00 37.61 3.02
797 798 7.664758 ACGTTATTATAGGGTGGATACTTGAC 58.335 38.462 0.00 0.00 37.61 3.18
798 799 7.288389 ACGTTATTATAGGGTGGATACTTGACA 59.712 37.037 0.00 0.00 37.61 3.58
799 800 7.813148 CGTTATTATAGGGTGGATACTTGACAG 59.187 40.741 0.00 0.00 37.61 3.51
800 801 6.688073 ATTATAGGGTGGATACTTGACAGG 57.312 41.667 0.00 0.00 37.61 4.00
801 802 1.584724 AGGGTGGATACTTGACAGGG 58.415 55.000 0.00 0.00 37.61 4.45
802 803 1.203440 AGGGTGGATACTTGACAGGGT 60.203 52.381 0.00 0.00 37.61 4.34
803 804 2.045326 AGGGTGGATACTTGACAGGGTA 59.955 50.000 0.00 0.00 37.61 3.69
804 805 2.434702 GGGTGGATACTTGACAGGGTAG 59.565 54.545 0.00 0.00 37.61 3.18
805 806 2.434702 GGTGGATACTTGACAGGGTAGG 59.565 54.545 0.00 0.00 37.61 3.18
806 807 3.105283 GTGGATACTTGACAGGGTAGGT 58.895 50.000 0.00 0.00 37.61 3.08
807 808 4.284178 GTGGATACTTGACAGGGTAGGTA 58.716 47.826 0.00 0.00 37.61 3.08
808 809 4.099113 GTGGATACTTGACAGGGTAGGTAC 59.901 50.000 0.00 0.00 37.61 3.34
809 810 4.264487 TGGATACTTGACAGGGTAGGTACA 60.264 45.833 0.00 0.00 37.61 2.90
810 811 4.341520 GGATACTTGACAGGGTAGGTACAG 59.658 50.000 0.00 0.00 0.00 2.74
811 812 3.537795 ACTTGACAGGGTAGGTACAGA 57.462 47.619 0.00 0.00 0.00 3.41
812 813 4.062490 ACTTGACAGGGTAGGTACAGAT 57.938 45.455 0.00 0.00 0.00 2.90
813 814 3.769844 ACTTGACAGGGTAGGTACAGATG 59.230 47.826 0.00 0.00 0.00 2.90
814 815 2.108168 TGACAGGGTAGGTACAGATGC 58.892 52.381 0.00 0.00 0.00 3.91
815 816 1.413077 GACAGGGTAGGTACAGATGCC 59.587 57.143 0.00 0.00 0.00 4.40
816 817 0.389391 CAGGGTAGGTACAGATGCCG 59.611 60.000 0.00 0.00 35.31 5.69
817 818 1.069258 GGGTAGGTACAGATGCCGC 59.931 63.158 0.00 0.00 35.31 6.53
818 819 1.400530 GGGTAGGTACAGATGCCGCT 61.401 60.000 0.00 0.00 35.31 5.52
819 820 1.325355 GGTAGGTACAGATGCCGCTA 58.675 55.000 0.00 0.00 35.31 4.26
820 821 1.684983 GGTAGGTACAGATGCCGCTAA 59.315 52.381 0.00 0.00 35.31 3.09
821 822 2.101917 GGTAGGTACAGATGCCGCTAAA 59.898 50.000 0.00 0.00 35.31 1.85
822 823 3.431207 GGTAGGTACAGATGCCGCTAAAA 60.431 47.826 0.00 0.00 35.31 1.52
823 824 3.343941 AGGTACAGATGCCGCTAAAAA 57.656 42.857 0.00 0.00 35.31 1.94
824 825 3.886123 AGGTACAGATGCCGCTAAAAAT 58.114 40.909 0.00 0.00 35.31 1.82
825 826 4.270008 AGGTACAGATGCCGCTAAAAATT 58.730 39.130 0.00 0.00 35.31 1.82
826 827 5.433526 AGGTACAGATGCCGCTAAAAATTA 58.566 37.500 0.00 0.00 35.31 1.40
827 828 5.296035 AGGTACAGATGCCGCTAAAAATTAC 59.704 40.000 0.00 0.00 35.31 1.89
828 829 5.296035 GGTACAGATGCCGCTAAAAATTACT 59.704 40.000 0.00 0.00 0.00 2.24
829 830 5.897377 ACAGATGCCGCTAAAAATTACTT 57.103 34.783 0.00 0.00 0.00 2.24
830 831 6.267496 ACAGATGCCGCTAAAAATTACTTT 57.733 33.333 0.00 0.00 0.00 2.66
831 832 6.092748 ACAGATGCCGCTAAAAATTACTTTG 58.907 36.000 0.00 0.00 0.00 2.77
832 833 5.516339 CAGATGCCGCTAAAAATTACTTTGG 59.484 40.000 0.00 0.00 0.00 3.28
833 834 3.580731 TGCCGCTAAAAATTACTTTGGC 58.419 40.909 1.90 1.90 38.87 4.52
838 839 5.129901 GCTAAAAATTACTTTGGCGCATG 57.870 39.130 10.83 0.00 33.83 4.06
839 840 4.032786 GCTAAAAATTACTTTGGCGCATGG 59.967 41.667 10.83 0.00 33.83 3.66
840 841 3.951775 AAAATTACTTTGGCGCATGGA 57.048 38.095 10.83 0.00 0.00 3.41
841 842 4.470334 AAAATTACTTTGGCGCATGGAT 57.530 36.364 10.83 0.00 0.00 3.41
842 843 3.441496 AATTACTTTGGCGCATGGATG 57.559 42.857 10.83 0.00 0.00 3.51
852 853 1.226491 GCATGGATGCGTGTCTTGC 60.226 57.895 8.33 0.00 44.67 4.01
853 854 1.651240 GCATGGATGCGTGTCTTGCT 61.651 55.000 8.33 0.00 44.67 3.91
854 855 0.806868 CATGGATGCGTGTCTTGCTT 59.193 50.000 0.00 0.00 0.00 3.91
855 856 1.089920 ATGGATGCGTGTCTTGCTTC 58.910 50.000 0.00 0.00 36.19 3.86
856 857 1.796796 GGATGCGTGTCTTGCTTCC 59.203 57.895 4.44 4.44 45.63 3.46
857 858 2.846371 GATGCGTGTCTTGCTTCCT 58.154 52.632 0.00 0.00 32.17 3.36
858 859 1.160137 GATGCGTGTCTTGCTTCCTT 58.840 50.000 0.00 0.00 32.17 3.36
859 860 0.877071 ATGCGTGTCTTGCTTCCTTG 59.123 50.000 0.00 0.00 0.00 3.61
860 861 0.463654 TGCGTGTCTTGCTTCCTTGT 60.464 50.000 0.00 0.00 0.00 3.16
861 862 0.235926 GCGTGTCTTGCTTCCTTGTC 59.764 55.000 0.00 0.00 0.00 3.18
862 863 0.508641 CGTGTCTTGCTTCCTTGTCG 59.491 55.000 0.00 0.00 0.00 4.35
863 864 0.868406 GTGTCTTGCTTCCTTGTCGG 59.132 55.000 0.00 0.00 0.00 4.79
864 865 0.756294 TGTCTTGCTTCCTTGTCGGA 59.244 50.000 0.00 0.00 41.06 4.55
875 876 3.408634 TCCTTGTCGGAAGATTTGAACC 58.591 45.455 0.00 0.00 45.19 3.62
876 877 3.146066 CCTTGTCGGAAGATTTGAACCA 58.854 45.455 0.00 0.00 45.19 3.67
877 878 3.189287 CCTTGTCGGAAGATTTGAACCAG 59.811 47.826 0.00 0.00 45.19 4.00
878 879 3.762407 TGTCGGAAGATTTGAACCAGA 57.238 42.857 0.00 0.00 45.19 3.86
879 880 3.399330 TGTCGGAAGATTTGAACCAGAC 58.601 45.455 0.00 0.00 45.19 3.51
880 881 2.412089 GTCGGAAGATTTGAACCAGACG 59.588 50.000 0.00 0.00 45.19 4.18
881 882 2.036733 TCGGAAGATTTGAACCAGACGT 59.963 45.455 0.00 0.00 33.31 4.34
882 883 2.157668 CGGAAGATTTGAACCAGACGTG 59.842 50.000 0.00 0.00 0.00 4.49
883 884 2.095718 GGAAGATTTGAACCAGACGTGC 60.096 50.000 0.00 0.00 0.00 5.34
884 885 2.254546 AGATTTGAACCAGACGTGCA 57.745 45.000 0.00 0.00 0.00 4.57
885 886 1.873591 AGATTTGAACCAGACGTGCAC 59.126 47.619 6.82 6.82 25.46 4.57
886 887 1.873591 GATTTGAACCAGACGTGCACT 59.126 47.619 16.19 1.46 25.46 4.40
887 888 1.013596 TTTGAACCAGACGTGCACTG 58.986 50.000 16.19 11.05 35.43 3.66
888 889 0.176910 TTGAACCAGACGTGCACTGA 59.823 50.000 16.19 0.00 37.54 3.41
889 890 0.392706 TGAACCAGACGTGCACTGAT 59.607 50.000 16.19 0.00 37.54 2.90
890 891 0.792640 GAACCAGACGTGCACTGATG 59.207 55.000 16.19 9.92 37.54 3.07
891 892 0.392706 AACCAGACGTGCACTGATGA 59.607 50.000 16.19 0.00 37.54 2.92
892 893 0.037882 ACCAGACGTGCACTGATGAG 60.038 55.000 16.19 0.00 37.54 2.90
893 894 1.357258 CCAGACGTGCACTGATGAGC 61.357 60.000 16.19 0.00 37.54 4.26
894 895 1.079543 AGACGTGCACTGATGAGCC 60.080 57.895 16.19 0.00 0.00 4.70
895 896 1.374631 GACGTGCACTGATGAGCCA 60.375 57.895 16.19 0.00 0.00 4.75
896 897 0.950555 GACGTGCACTGATGAGCCAA 60.951 55.000 16.19 0.00 0.00 4.52
897 898 0.952497 ACGTGCACTGATGAGCCAAG 60.952 55.000 16.19 0.00 0.00 3.61
898 899 0.952497 CGTGCACTGATGAGCCAAGT 60.952 55.000 16.19 0.00 0.00 3.16
899 900 1.242076 GTGCACTGATGAGCCAAGTT 58.758 50.000 10.32 0.00 0.00 2.66
900 901 1.610522 GTGCACTGATGAGCCAAGTTT 59.389 47.619 10.32 0.00 0.00 2.66
901 902 2.813754 GTGCACTGATGAGCCAAGTTTA 59.186 45.455 10.32 0.00 0.00 2.01
902 903 3.076621 TGCACTGATGAGCCAAGTTTAG 58.923 45.455 0.00 0.00 0.00 1.85
903 904 3.077359 GCACTGATGAGCCAAGTTTAGT 58.923 45.455 0.00 0.00 0.00 2.24
904 905 3.120060 GCACTGATGAGCCAAGTTTAGTG 60.120 47.826 0.00 0.00 37.82 2.74
905 906 4.067896 CACTGATGAGCCAAGTTTAGTGT 58.932 43.478 0.00 0.00 32.02 3.55
906 907 5.237815 CACTGATGAGCCAAGTTTAGTGTA 58.762 41.667 0.00 0.00 32.02 2.90
907 908 5.120830 CACTGATGAGCCAAGTTTAGTGTAC 59.879 44.000 0.00 0.00 32.02 2.90
908 909 4.575885 TGATGAGCCAAGTTTAGTGTACC 58.424 43.478 0.00 0.00 0.00 3.34
909 910 4.041075 TGATGAGCCAAGTTTAGTGTACCA 59.959 41.667 0.00 0.00 0.00 3.25
910 911 4.634012 TGAGCCAAGTTTAGTGTACCAT 57.366 40.909 0.00 0.00 0.00 3.55
911 912 4.575885 TGAGCCAAGTTTAGTGTACCATC 58.424 43.478 0.00 0.00 0.00 3.51
912 913 4.041075 TGAGCCAAGTTTAGTGTACCATCA 59.959 41.667 0.00 0.00 0.00 3.07
913 914 4.324267 AGCCAAGTTTAGTGTACCATCAC 58.676 43.478 0.00 0.00 38.46 3.06
914 915 4.069304 GCCAAGTTTAGTGTACCATCACA 58.931 43.478 0.00 0.00 40.37 3.58
915 916 4.517453 GCCAAGTTTAGTGTACCATCACAA 59.483 41.667 0.00 0.00 40.37 3.33
916 917 5.009210 GCCAAGTTTAGTGTACCATCACAAA 59.991 40.000 0.00 0.00 40.37 2.83
917 918 6.460399 GCCAAGTTTAGTGTACCATCACAAAA 60.460 38.462 0.00 0.00 40.37 2.44
918 919 7.484975 CCAAGTTTAGTGTACCATCACAAAAA 58.515 34.615 0.00 0.00 40.37 1.94
940 941 4.559862 AAAAATTGTGTTTGTGGGGTGA 57.440 36.364 0.00 0.00 0.00 4.02
941 942 3.535280 AAATTGTGTTTGTGGGGTGAC 57.465 42.857 0.00 0.00 0.00 3.67
942 943 2.452600 ATTGTGTTTGTGGGGTGACT 57.547 45.000 0.00 0.00 0.00 3.41
943 944 3.586470 ATTGTGTTTGTGGGGTGACTA 57.414 42.857 0.00 0.00 0.00 2.59
944 945 3.367646 TTGTGTTTGTGGGGTGACTAA 57.632 42.857 0.00 0.00 0.00 2.24
945 946 3.367646 TGTGTTTGTGGGGTGACTAAA 57.632 42.857 0.00 0.00 0.00 1.85
946 947 3.018149 TGTGTTTGTGGGGTGACTAAAC 58.982 45.455 0.00 0.00 33.20 2.01
947 948 3.018149 GTGTTTGTGGGGTGACTAAACA 58.982 45.455 0.00 0.00 38.48 2.83
948 949 3.066203 GTGTTTGTGGGGTGACTAAACAG 59.934 47.826 0.00 0.00 40.59 3.16
949 950 3.054287 TGTTTGTGGGGTGACTAAACAGA 60.054 43.478 0.00 0.00 36.61 3.41
950 951 3.485463 TTGTGGGGTGACTAAACAGAG 57.515 47.619 0.00 0.00 0.00 3.35
951 952 1.071699 TGTGGGGTGACTAAACAGAGC 59.928 52.381 0.00 0.00 0.00 4.09
952 953 1.071699 GTGGGGTGACTAAACAGAGCA 59.928 52.381 0.00 0.00 0.00 4.26
953 954 1.071699 TGGGGTGACTAAACAGAGCAC 59.928 52.381 0.00 0.00 0.00 4.40
954 955 1.071699 GGGGTGACTAAACAGAGCACA 59.928 52.381 0.00 0.00 0.00 4.57
955 956 2.290323 GGGGTGACTAAACAGAGCACAT 60.290 50.000 0.00 0.00 0.00 3.21
956 957 2.744202 GGGTGACTAAACAGAGCACATG 59.256 50.000 0.00 0.00 0.00 3.21
957 958 2.160417 GGTGACTAAACAGAGCACATGC 59.840 50.000 0.00 0.00 42.49 4.06
958 959 2.807967 GTGACTAAACAGAGCACATGCA 59.192 45.455 6.64 0.00 45.16 3.96
959 960 3.069289 TGACTAAACAGAGCACATGCAG 58.931 45.455 6.64 0.00 45.16 4.41
960 961 3.244181 TGACTAAACAGAGCACATGCAGA 60.244 43.478 6.64 0.00 45.16 4.26
961 962 3.332919 ACTAAACAGAGCACATGCAGAG 58.667 45.455 6.64 0.00 45.16 3.35
962 963 2.267174 AAACAGAGCACATGCAGAGT 57.733 45.000 6.64 0.00 45.16 3.24
963 964 2.267174 AACAGAGCACATGCAGAGTT 57.733 45.000 6.64 4.53 45.16 3.01
964 965 3.407424 AACAGAGCACATGCAGAGTTA 57.593 42.857 6.64 0.00 45.16 2.24
965 966 2.693069 ACAGAGCACATGCAGAGTTAC 58.307 47.619 6.64 0.00 45.16 2.50
966 967 2.301296 ACAGAGCACATGCAGAGTTACT 59.699 45.455 6.64 0.00 45.16 2.24
967 968 3.244353 ACAGAGCACATGCAGAGTTACTT 60.244 43.478 6.64 0.00 45.16 2.24
968 969 3.124806 CAGAGCACATGCAGAGTTACTTG 59.875 47.826 6.64 0.00 45.16 3.16
969 970 3.070018 GAGCACATGCAGAGTTACTTGT 58.930 45.455 6.64 0.00 45.16 3.16
970 971 2.810274 AGCACATGCAGAGTTACTTGTG 59.190 45.455 6.64 9.11 45.16 3.33
971 972 3.193157 CACATGCAGAGTTACTTGTGC 57.807 47.619 12.06 12.06 35.85 4.57
972 973 2.095567 CACATGCAGAGTTACTTGTGCC 60.096 50.000 15.10 2.33 35.85 5.01
973 974 2.153645 CATGCAGAGTTACTTGTGCCA 58.846 47.619 15.10 6.69 34.91 4.92
977 978 1.195448 CAGAGTTACTTGTGCCAAGCG 59.805 52.381 13.00 0.00 0.00 4.68
980 981 2.484264 GAGTTACTTGTGCCAAGCGAAT 59.516 45.455 13.00 3.78 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 4.777366 TCCCAAGTCATCTACTTCATCACA 59.223 41.667 0.00 0.00 45.64 3.58
183 184 2.036992 GCCAAAACATCACCACCATTGA 59.963 45.455 0.00 0.00 0.00 2.57
510 511 2.888414 GTGCAGGTAAAGGTTGCCTAAA 59.112 45.455 0.00 0.00 44.48 1.85
511 512 2.510613 GTGCAGGTAAAGGTTGCCTAA 58.489 47.619 0.00 0.00 44.48 2.69
512 513 1.271707 GGTGCAGGTAAAGGTTGCCTA 60.272 52.381 0.00 0.00 44.48 3.93
514 515 1.532604 GGGTGCAGGTAAAGGTTGCC 61.533 60.000 0.00 0.00 37.03 4.52
515 516 1.862602 CGGGTGCAGGTAAAGGTTGC 61.863 60.000 0.00 0.00 38.30 4.17
516 517 0.250553 TCGGGTGCAGGTAAAGGTTG 60.251 55.000 0.00 0.00 0.00 3.77
517 518 0.475044 TTCGGGTGCAGGTAAAGGTT 59.525 50.000 0.00 0.00 0.00 3.50
518 519 0.696501 ATTCGGGTGCAGGTAAAGGT 59.303 50.000 0.00 0.00 0.00 3.50
519 520 1.379527 GATTCGGGTGCAGGTAAAGG 58.620 55.000 0.00 0.00 0.00 3.11
520 521 1.339631 TGGATTCGGGTGCAGGTAAAG 60.340 52.381 0.00 0.00 0.00 1.85
521 522 0.693622 TGGATTCGGGTGCAGGTAAA 59.306 50.000 0.00 0.00 0.00 2.01
522 523 0.251916 CTGGATTCGGGTGCAGGTAA 59.748 55.000 0.00 0.00 34.33 2.85
523 524 0.907704 ACTGGATTCGGGTGCAGGTA 60.908 55.000 12.43 0.00 41.31 3.08
524 525 2.224159 ACTGGATTCGGGTGCAGGT 61.224 57.895 12.43 0.00 41.31 4.00
525 526 1.746615 CACTGGATTCGGGTGCAGG 60.747 63.158 12.43 1.04 41.31 4.85
526 527 1.746615 CCACTGGATTCGGGTGCAG 60.747 63.158 7.67 7.67 42.52 4.41
527 528 1.561769 ATCCACTGGATTCGGGTGCA 61.562 55.000 4.55 0.00 39.79 4.57
528 529 1.097547 CATCCACTGGATTCGGGTGC 61.098 60.000 7.95 0.00 39.79 5.01
529 530 1.097547 GCATCCACTGGATTCGGGTG 61.098 60.000 7.95 0.00 39.79 4.61
530 531 1.224592 GCATCCACTGGATTCGGGT 59.775 57.895 7.95 0.00 39.79 5.28
531 532 0.394216 TTGCATCCACTGGATTCGGG 60.394 55.000 7.95 0.00 39.79 5.14
532 533 1.335810 CATTGCATCCACTGGATTCGG 59.664 52.381 7.95 0.00 39.79 4.30
533 534 2.019249 ACATTGCATCCACTGGATTCG 58.981 47.619 7.95 0.00 39.79 3.34
534 535 3.444742 TCAACATTGCATCCACTGGATTC 59.555 43.478 7.95 4.23 39.79 2.52
535 536 3.433343 TCAACATTGCATCCACTGGATT 58.567 40.909 7.95 0.00 39.79 3.01
536 537 3.021695 CTCAACATTGCATCCACTGGAT 58.978 45.455 4.55 4.55 44.21 3.41
537 538 2.439409 CTCAACATTGCATCCACTGGA 58.561 47.619 0.00 0.00 35.55 3.86
538 539 1.475280 CCTCAACATTGCATCCACTGG 59.525 52.381 0.00 0.00 0.00 4.00
539 540 1.135199 GCCTCAACATTGCATCCACTG 60.135 52.381 0.00 0.00 0.00 3.66
540 541 1.180029 GCCTCAACATTGCATCCACT 58.820 50.000 0.00 0.00 0.00 4.00
541 542 0.889994 TGCCTCAACATTGCATCCAC 59.110 50.000 0.00 0.00 0.00 4.02
542 543 1.273048 GTTGCCTCAACATTGCATCCA 59.727 47.619 4.95 0.00 43.09 3.41
543 544 2.000429 GTTGCCTCAACATTGCATCC 58.000 50.000 4.95 0.00 43.09 3.51
552 553 1.004277 TCCCACCTATGTTGCCTCAAC 59.996 52.381 2.96 2.96 43.78 3.18
553 554 1.367346 TCCCACCTATGTTGCCTCAA 58.633 50.000 0.00 0.00 0.00 3.02
554 555 1.212688 CATCCCACCTATGTTGCCTCA 59.787 52.381 0.00 0.00 0.00 3.86
555 556 1.972872 CATCCCACCTATGTTGCCTC 58.027 55.000 0.00 0.00 0.00 4.70
556 557 0.106519 GCATCCCACCTATGTTGCCT 60.107 55.000 0.00 0.00 0.00 4.75
557 558 1.109323 GGCATCCCACCTATGTTGCC 61.109 60.000 0.00 0.00 42.40 4.52
558 559 0.395586 TGGCATCCCACCTATGTTGC 60.396 55.000 0.00 0.00 35.79 4.17
559 560 1.958579 CATGGCATCCCACCTATGTTG 59.041 52.381 0.00 0.00 45.77 3.33
560 561 1.570501 ACATGGCATCCCACCTATGTT 59.429 47.619 0.00 0.00 45.77 2.71
561 562 1.225373 ACATGGCATCCCACCTATGT 58.775 50.000 0.00 0.00 45.77 2.29
562 563 2.233271 GAACATGGCATCCCACCTATG 58.767 52.381 0.00 0.00 45.77 2.23
563 564 1.852309 TGAACATGGCATCCCACCTAT 59.148 47.619 0.00 0.00 45.77 2.57
564 565 1.294041 TGAACATGGCATCCCACCTA 58.706 50.000 0.00 0.00 45.77 3.08
565 566 0.409092 TTGAACATGGCATCCCACCT 59.591 50.000 0.00 0.00 45.77 4.00
566 567 1.265236 TTTGAACATGGCATCCCACC 58.735 50.000 0.00 0.00 45.77 4.61
567 568 4.734398 TTATTTGAACATGGCATCCCAC 57.266 40.909 0.00 0.00 45.77 4.61
569 570 4.443315 CCCTTTATTTGAACATGGCATCCC 60.443 45.833 0.00 0.00 0.00 3.85
570 571 4.696455 CCCTTTATTTGAACATGGCATCC 58.304 43.478 0.00 0.00 0.00 3.51
571 572 4.122046 GCCCTTTATTTGAACATGGCATC 58.878 43.478 0.00 0.00 37.58 3.91
572 573 3.518705 TGCCCTTTATTTGAACATGGCAT 59.481 39.130 0.00 0.00 42.32 4.40
573 574 2.902486 TGCCCTTTATTTGAACATGGCA 59.098 40.909 0.00 0.00 44.77 4.92
574 575 3.608316 TGCCCTTTATTTGAACATGGC 57.392 42.857 0.00 0.00 38.13 4.40
575 576 5.341872 TCATGCCCTTTATTTGAACATGG 57.658 39.130 0.00 0.00 35.34 3.66
576 577 6.400568 AGTTCATGCCCTTTATTTGAACATG 58.599 36.000 14.36 0.00 45.34 3.21
577 578 6.610075 AGTTCATGCCCTTTATTTGAACAT 57.390 33.333 14.36 0.54 45.34 2.71
578 579 6.418057 AAGTTCATGCCCTTTATTTGAACA 57.582 33.333 14.36 0.00 45.34 3.18
579 580 8.872845 CAATAAGTTCATGCCCTTTATTTGAAC 58.127 33.333 6.09 6.09 44.00 3.18
580 581 8.040132 CCAATAAGTTCATGCCCTTTATTTGAA 58.960 33.333 2.61 0.00 0.00 2.69
581 582 7.364585 CCCAATAAGTTCATGCCCTTTATTTGA 60.365 37.037 2.61 0.00 0.00 2.69
582 583 6.762661 CCCAATAAGTTCATGCCCTTTATTTG 59.237 38.462 2.61 5.29 0.00 2.32
583 584 6.126796 CCCCAATAAGTTCATGCCCTTTATTT 60.127 38.462 2.61 0.00 0.00 1.40
584 585 5.366477 CCCCAATAAGTTCATGCCCTTTATT 59.634 40.000 2.61 1.79 0.00 1.40
585 586 4.901250 CCCCAATAAGTTCATGCCCTTTAT 59.099 41.667 2.61 0.00 0.00 1.40
586 587 4.264623 ACCCCAATAAGTTCATGCCCTTTA 60.265 41.667 2.61 0.00 0.00 1.85
587 588 3.106827 CCCCAATAAGTTCATGCCCTTT 58.893 45.455 2.61 0.00 0.00 3.11
588 589 2.044353 ACCCCAATAAGTTCATGCCCTT 59.956 45.455 0.00 0.00 0.00 3.95
589 590 1.645919 ACCCCAATAAGTTCATGCCCT 59.354 47.619 0.00 0.00 0.00 5.19
590 591 2.031870 GACCCCAATAAGTTCATGCCC 58.968 52.381 0.00 0.00 0.00 5.36
591 592 2.952310 GAGACCCCAATAAGTTCATGCC 59.048 50.000 0.00 0.00 0.00 4.40
592 593 2.614057 CGAGACCCCAATAAGTTCATGC 59.386 50.000 0.00 0.00 0.00 4.06
593 594 4.122776 CTCGAGACCCCAATAAGTTCATG 58.877 47.826 6.58 0.00 0.00 3.07
594 595 3.775316 ACTCGAGACCCCAATAAGTTCAT 59.225 43.478 21.68 0.00 0.00 2.57
595 596 3.170717 ACTCGAGACCCCAATAAGTTCA 58.829 45.455 21.68 0.00 0.00 3.18
596 597 3.194968 TGACTCGAGACCCCAATAAGTTC 59.805 47.826 21.68 1.41 0.00 3.01
597 598 3.170717 TGACTCGAGACCCCAATAAGTT 58.829 45.455 21.68 0.00 0.00 2.66
598 599 2.816411 TGACTCGAGACCCCAATAAGT 58.184 47.619 21.68 0.00 0.00 2.24
599 600 3.384789 TCATGACTCGAGACCCCAATAAG 59.615 47.826 21.68 0.00 0.00 1.73
600 601 3.371034 TCATGACTCGAGACCCCAATAA 58.629 45.455 21.68 0.00 0.00 1.40
601 602 3.026707 TCATGACTCGAGACCCCAATA 57.973 47.619 21.68 0.00 0.00 1.90
602 603 1.866015 TCATGACTCGAGACCCCAAT 58.134 50.000 21.68 0.00 0.00 3.16
603 604 1.866015 ATCATGACTCGAGACCCCAA 58.134 50.000 21.68 0.00 0.00 4.12
604 605 1.866015 AATCATGACTCGAGACCCCA 58.134 50.000 21.68 11.32 0.00 4.96
605 606 4.608948 AATAATCATGACTCGAGACCCC 57.391 45.455 21.68 5.72 0.00 4.95
606 607 5.477291 TCCTAATAATCATGACTCGAGACCC 59.523 44.000 21.68 8.30 0.00 4.46
607 608 6.576662 TCCTAATAATCATGACTCGAGACC 57.423 41.667 21.68 10.93 0.00 3.85
608 609 7.032580 CCATCCTAATAATCATGACTCGAGAC 58.967 42.308 21.68 14.43 0.00 3.36
609 610 6.948309 TCCATCCTAATAATCATGACTCGAGA 59.052 38.462 21.68 0.00 0.00 4.04
610 611 7.163001 TCCATCCTAATAATCATGACTCGAG 57.837 40.000 11.84 11.84 0.00 4.04
611 612 7.539034 TTCCATCCTAATAATCATGACTCGA 57.461 36.000 0.00 0.00 0.00 4.04
612 613 6.312426 GCTTCCATCCTAATAATCATGACTCG 59.688 42.308 0.00 0.00 0.00 4.18
613 614 6.312426 CGCTTCCATCCTAATAATCATGACTC 59.688 42.308 0.00 0.00 0.00 3.36
614 615 6.169094 CGCTTCCATCCTAATAATCATGACT 58.831 40.000 0.00 0.00 0.00 3.41
615 616 5.934625 ACGCTTCCATCCTAATAATCATGAC 59.065 40.000 0.00 0.00 0.00 3.06
616 617 6.114187 ACGCTTCCATCCTAATAATCATGA 57.886 37.500 0.00 0.00 0.00 3.07
617 618 5.934043 TGACGCTTCCATCCTAATAATCATG 59.066 40.000 0.00 0.00 0.00 3.07
618 619 6.114187 TGACGCTTCCATCCTAATAATCAT 57.886 37.500 0.00 0.00 0.00 2.45
619 620 5.545063 TGACGCTTCCATCCTAATAATCA 57.455 39.130 0.00 0.00 0.00 2.57
620 621 5.106908 GCTTGACGCTTCCATCCTAATAATC 60.107 44.000 0.00 0.00 35.14 1.75
621 622 4.757149 GCTTGACGCTTCCATCCTAATAAT 59.243 41.667 0.00 0.00 35.14 1.28
622 623 4.127171 GCTTGACGCTTCCATCCTAATAA 58.873 43.478 0.00 0.00 35.14 1.40
623 624 3.728845 GCTTGACGCTTCCATCCTAATA 58.271 45.455 0.00 0.00 35.14 0.98
624 625 2.565841 GCTTGACGCTTCCATCCTAAT 58.434 47.619 0.00 0.00 35.14 1.73
625 626 1.739035 CGCTTGACGCTTCCATCCTAA 60.739 52.381 0.00 0.00 36.13 2.69
626 627 0.179111 CGCTTGACGCTTCCATCCTA 60.179 55.000 0.00 0.00 36.13 2.94
627 628 1.448540 CGCTTGACGCTTCCATCCT 60.449 57.895 0.00 0.00 36.13 3.24
628 629 3.093278 CGCTTGACGCTTCCATCC 58.907 61.111 0.00 0.00 36.13 3.51
638 639 4.213482 AGAAAAGAATACCACACGCTTGAC 59.787 41.667 0.00 0.00 0.00 3.18
639 640 4.385825 AGAAAAGAATACCACACGCTTGA 58.614 39.130 0.00 0.00 0.00 3.02
640 641 4.749245 AGAAAAGAATACCACACGCTTG 57.251 40.909 0.00 0.00 0.00 4.01
641 642 5.067283 ACAAAGAAAAGAATACCACACGCTT 59.933 36.000 0.00 0.00 0.00 4.68
642 643 4.578928 ACAAAGAAAAGAATACCACACGCT 59.421 37.500 0.00 0.00 0.00 5.07
643 644 4.855531 ACAAAGAAAAGAATACCACACGC 58.144 39.130 0.00 0.00 0.00 5.34
644 645 5.173131 GCAACAAAGAAAAGAATACCACACG 59.827 40.000 0.00 0.00 0.00 4.49
645 646 6.039616 TGCAACAAAGAAAAGAATACCACAC 58.960 36.000 0.00 0.00 0.00 3.82
646 647 6.214191 TGCAACAAAGAAAAGAATACCACA 57.786 33.333 0.00 0.00 0.00 4.17
647 648 5.175673 GCTGCAACAAAGAAAAGAATACCAC 59.824 40.000 0.00 0.00 0.00 4.16
648 649 5.288804 GCTGCAACAAAGAAAAGAATACCA 58.711 37.500 0.00 0.00 0.00 3.25
649 650 4.382754 CGCTGCAACAAAGAAAAGAATACC 59.617 41.667 0.00 0.00 0.00 2.73
650 651 4.143535 GCGCTGCAACAAAGAAAAGAATAC 60.144 41.667 0.00 0.00 0.00 1.89
651 652 3.980775 GCGCTGCAACAAAGAAAAGAATA 59.019 39.130 0.00 0.00 0.00 1.75
652 653 2.796593 GCGCTGCAACAAAGAAAAGAAT 59.203 40.909 0.00 0.00 0.00 2.40
653 654 2.192624 GCGCTGCAACAAAGAAAAGAA 58.807 42.857 0.00 0.00 0.00 2.52
654 655 1.133982 TGCGCTGCAACAAAGAAAAGA 59.866 42.857 9.73 0.00 34.76 2.52
655 656 1.256117 GTGCGCTGCAACAAAGAAAAG 59.744 47.619 9.73 0.00 41.47 2.27
656 657 1.276415 GTGCGCTGCAACAAAGAAAA 58.724 45.000 9.73 0.00 41.47 2.29
657 658 0.172127 TGTGCGCTGCAACAAAGAAA 59.828 45.000 9.73 0.00 41.47 2.52
658 659 0.248580 CTGTGCGCTGCAACAAAGAA 60.249 50.000 9.73 0.00 41.47 2.52
659 660 1.094650 TCTGTGCGCTGCAACAAAGA 61.095 50.000 9.73 8.12 41.47 2.52
660 661 0.039798 ATCTGTGCGCTGCAACAAAG 60.040 50.000 9.73 1.84 41.47 2.77
661 662 0.385029 AATCTGTGCGCTGCAACAAA 59.615 45.000 9.73 0.00 41.47 2.83
662 663 0.040157 GAATCTGTGCGCTGCAACAA 60.040 50.000 9.73 0.00 41.47 2.83
663 664 0.886043 AGAATCTGTGCGCTGCAACA 60.886 50.000 9.73 3.08 41.47 3.33
664 665 0.239347 AAGAATCTGTGCGCTGCAAC 59.761 50.000 9.73 0.00 41.47 4.17
665 666 0.953727 AAAGAATCTGTGCGCTGCAA 59.046 45.000 9.73 0.00 41.47 4.08
666 667 0.953727 AAAAGAATCTGTGCGCTGCA 59.046 45.000 9.73 7.03 35.60 4.41
667 668 1.334054 CAAAAGAATCTGTGCGCTGC 58.666 50.000 9.73 1.68 0.00 5.25
668 669 1.068748 AGCAAAAGAATCTGTGCGCTG 60.069 47.619 9.73 0.00 41.90 5.18
669 670 1.242076 AGCAAAAGAATCTGTGCGCT 58.758 45.000 9.73 3.27 41.90 5.92
670 671 2.160417 ACTAGCAAAAGAATCTGTGCGC 59.840 45.455 0.00 0.00 41.90 6.09
671 672 3.433274 TCACTAGCAAAAGAATCTGTGCG 59.567 43.478 11.88 3.95 41.90 5.34
672 673 5.362556 TTCACTAGCAAAAGAATCTGTGC 57.637 39.130 10.25 10.25 37.26 4.57
673 674 7.959651 GTGTATTCACTAGCAAAAGAATCTGTG 59.040 37.037 0.00 0.00 40.98 3.66
674 675 7.661437 TGTGTATTCACTAGCAAAAGAATCTGT 59.339 33.333 4.01 0.00 44.14 3.41
675 676 8.032952 TGTGTATTCACTAGCAAAAGAATCTG 57.967 34.615 4.01 0.00 44.14 2.90
676 677 8.671921 CATGTGTATTCACTAGCAAAAGAATCT 58.328 33.333 4.01 0.00 44.14 2.40
677 678 8.454106 ACATGTGTATTCACTAGCAAAAGAATC 58.546 33.333 0.00 0.00 44.14 2.52
678 679 8.340618 ACATGTGTATTCACTAGCAAAAGAAT 57.659 30.769 0.00 0.00 44.14 2.40
679 680 7.744087 ACATGTGTATTCACTAGCAAAAGAA 57.256 32.000 0.00 0.00 44.14 2.52
682 683 9.884636 AGTATACATGTGTATTCACTAGCAAAA 57.115 29.630 9.11 0.00 44.14 2.44
683 684 9.313118 CAGTATACATGTGTATTCACTAGCAAA 57.687 33.333 9.11 0.00 44.14 3.68
684 685 8.474831 ACAGTATACATGTGTATTCACTAGCAA 58.525 33.333 9.11 0.00 44.14 3.91
685 686 8.007405 ACAGTATACATGTGTATTCACTAGCA 57.993 34.615 9.11 0.00 44.14 3.49
708 709 2.573915 TGCACCATTCCCTGTGTATACA 59.426 45.455 0.08 0.08 34.94 2.29
709 710 2.943033 GTGCACCATTCCCTGTGTATAC 59.057 50.000 5.22 0.00 34.94 1.47
710 711 2.092646 GGTGCACCATTCCCTGTGTATA 60.093 50.000 31.23 0.00 34.94 1.47
711 712 1.340991 GGTGCACCATTCCCTGTGTAT 60.341 52.381 31.23 0.00 34.94 2.29
712 713 0.037590 GGTGCACCATTCCCTGTGTA 59.962 55.000 31.23 0.00 34.94 2.90
713 714 1.228552 GGTGCACCATTCCCTGTGT 60.229 57.895 31.23 0.00 34.94 3.72
714 715 1.228521 TGGTGCACCATTCCCTGTG 60.229 57.895 34.74 0.00 42.01 3.66
715 716 1.075482 CTGGTGCACCATTCCCTGT 59.925 57.895 37.66 0.00 46.46 4.00
716 717 0.033796 ATCTGGTGCACCATTCCCTG 60.034 55.000 37.66 24.57 46.46 4.45
717 718 0.033796 CATCTGGTGCACCATTCCCT 60.034 55.000 37.66 17.83 46.46 4.20
718 719 2.496942 CATCTGGTGCACCATTCCC 58.503 57.895 37.66 10.72 46.46 3.97
728 729 1.131126 GGACGATTTGTGCATCTGGTG 59.869 52.381 0.00 0.00 39.04 4.17
729 730 1.271325 TGGACGATTTGTGCATCTGGT 60.271 47.619 0.00 0.00 44.74 4.00
730 731 1.452110 TGGACGATTTGTGCATCTGG 58.548 50.000 0.00 0.00 44.74 3.86
736 737 0.881118 ACCACATGGACGATTTGTGC 59.119 50.000 4.53 0.00 39.48 4.57
737 738 3.426159 GCTTACCACATGGACGATTTGTG 60.426 47.826 4.53 0.00 40.29 3.33
738 739 2.747446 GCTTACCACATGGACGATTTGT 59.253 45.455 4.53 0.00 38.94 2.83
739 740 2.746904 TGCTTACCACATGGACGATTTG 59.253 45.455 4.53 0.00 38.94 2.32
740 741 3.066291 TGCTTACCACATGGACGATTT 57.934 42.857 4.53 0.00 38.94 2.17
741 742 2.747446 GTTGCTTACCACATGGACGATT 59.253 45.455 4.53 0.00 38.94 3.34
742 743 2.356135 GTTGCTTACCACATGGACGAT 58.644 47.619 4.53 0.00 38.94 3.73
743 744 1.609580 GGTTGCTTACCACATGGACGA 60.610 52.381 4.53 0.00 46.92 4.20
744 745 0.802494 GGTTGCTTACCACATGGACG 59.198 55.000 4.53 0.00 46.92 4.79
768 769 9.910267 AAGTATCCACCCTATAATAACGTTTTT 57.090 29.630 5.91 7.78 0.00 1.94
769 770 9.333724 CAAGTATCCACCCTATAATAACGTTTT 57.666 33.333 5.91 3.53 0.00 2.43
770 771 8.707449 TCAAGTATCCACCCTATAATAACGTTT 58.293 33.333 5.91 0.00 0.00 3.60
771 772 8.146412 GTCAAGTATCCACCCTATAATAACGTT 58.854 37.037 5.88 5.88 0.00 3.99
772 773 7.288389 TGTCAAGTATCCACCCTATAATAACGT 59.712 37.037 0.00 0.00 0.00 3.99
773 774 7.663827 TGTCAAGTATCCACCCTATAATAACG 58.336 38.462 0.00 0.00 0.00 3.18
774 775 8.095169 CCTGTCAAGTATCCACCCTATAATAAC 58.905 40.741 0.00 0.00 0.00 1.89
775 776 7.236847 CCCTGTCAAGTATCCACCCTATAATAA 59.763 40.741 0.00 0.00 0.00 1.40
776 777 6.729100 CCCTGTCAAGTATCCACCCTATAATA 59.271 42.308 0.00 0.00 0.00 0.98
777 778 5.548056 CCCTGTCAAGTATCCACCCTATAAT 59.452 44.000 0.00 0.00 0.00 1.28
778 779 4.905456 CCCTGTCAAGTATCCACCCTATAA 59.095 45.833 0.00 0.00 0.00 0.98
779 780 4.078219 ACCCTGTCAAGTATCCACCCTATA 60.078 45.833 0.00 0.00 0.00 1.31
780 781 3.311402 ACCCTGTCAAGTATCCACCCTAT 60.311 47.826 0.00 0.00 0.00 2.57
781 782 2.045326 ACCCTGTCAAGTATCCACCCTA 59.955 50.000 0.00 0.00 0.00 3.53
782 783 1.203440 ACCCTGTCAAGTATCCACCCT 60.203 52.381 0.00 0.00 0.00 4.34
783 784 1.286248 ACCCTGTCAAGTATCCACCC 58.714 55.000 0.00 0.00 0.00 4.61
784 785 2.434702 CCTACCCTGTCAAGTATCCACC 59.565 54.545 0.00 0.00 0.00 4.61
785 786 3.105283 ACCTACCCTGTCAAGTATCCAC 58.895 50.000 0.00 0.00 0.00 4.02
786 787 3.484953 ACCTACCCTGTCAAGTATCCA 57.515 47.619 0.00 0.00 0.00 3.41
787 788 4.284178 TGTACCTACCCTGTCAAGTATCC 58.716 47.826 0.00 0.00 0.00 2.59
788 789 5.198965 TCTGTACCTACCCTGTCAAGTATC 58.801 45.833 0.00 0.00 0.00 2.24
789 790 5.202746 TCTGTACCTACCCTGTCAAGTAT 57.797 43.478 0.00 0.00 0.00 2.12
790 791 4.662966 TCTGTACCTACCCTGTCAAGTA 57.337 45.455 0.00 0.00 0.00 2.24
791 792 3.537795 TCTGTACCTACCCTGTCAAGT 57.462 47.619 0.00 0.00 0.00 3.16
792 793 3.430929 GCATCTGTACCTACCCTGTCAAG 60.431 52.174 0.00 0.00 0.00 3.02
793 794 2.500098 GCATCTGTACCTACCCTGTCAA 59.500 50.000 0.00 0.00 0.00 3.18
794 795 2.108168 GCATCTGTACCTACCCTGTCA 58.892 52.381 0.00 0.00 0.00 3.58
795 796 1.413077 GGCATCTGTACCTACCCTGTC 59.587 57.143 0.00 0.00 0.00 3.51
796 797 1.497161 GGCATCTGTACCTACCCTGT 58.503 55.000 0.00 0.00 0.00 4.00
797 798 0.389391 CGGCATCTGTACCTACCCTG 59.611 60.000 0.00 0.00 0.00 4.45
798 799 1.400530 GCGGCATCTGTACCTACCCT 61.401 60.000 0.00 0.00 0.00 4.34
799 800 1.069258 GCGGCATCTGTACCTACCC 59.931 63.158 0.00 0.00 0.00 3.69
800 801 1.325355 TAGCGGCATCTGTACCTACC 58.675 55.000 1.45 0.00 0.00 3.18
801 802 3.447918 TTTAGCGGCATCTGTACCTAC 57.552 47.619 1.45 0.00 0.00 3.18
802 803 4.475051 TTTTTAGCGGCATCTGTACCTA 57.525 40.909 1.45 0.00 0.00 3.08
803 804 3.343941 TTTTTAGCGGCATCTGTACCT 57.656 42.857 1.45 0.00 0.00 3.08
804 805 4.632538 AATTTTTAGCGGCATCTGTACC 57.367 40.909 1.45 0.00 0.00 3.34
805 806 6.359480 AGTAATTTTTAGCGGCATCTGTAC 57.641 37.500 1.45 0.00 0.00 2.90
806 807 6.995511 AAGTAATTTTTAGCGGCATCTGTA 57.004 33.333 1.45 0.00 0.00 2.74
807 808 5.897377 AAGTAATTTTTAGCGGCATCTGT 57.103 34.783 1.45 0.00 0.00 3.41
808 809 5.516339 CCAAAGTAATTTTTAGCGGCATCTG 59.484 40.000 1.45 0.00 0.00 2.90
809 810 5.650543 CCAAAGTAATTTTTAGCGGCATCT 58.349 37.500 1.45 0.00 0.00 2.90
810 811 4.267690 GCCAAAGTAATTTTTAGCGGCATC 59.732 41.667 1.45 0.00 35.35 3.91
811 812 4.180817 GCCAAAGTAATTTTTAGCGGCAT 58.819 39.130 1.45 0.00 35.35 4.40
812 813 3.580731 GCCAAAGTAATTTTTAGCGGCA 58.419 40.909 1.45 0.00 35.35 5.69
813 814 2.596862 CGCCAAAGTAATTTTTAGCGGC 59.403 45.455 13.59 9.34 41.66 6.53
814 815 2.596862 GCGCCAAAGTAATTTTTAGCGG 59.403 45.455 19.55 5.83 43.76 5.52
815 816 3.238441 TGCGCCAAAGTAATTTTTAGCG 58.762 40.909 15.91 15.91 45.16 4.26
816 817 4.032786 CCATGCGCCAAAGTAATTTTTAGC 59.967 41.667 4.18 0.00 0.00 3.09
817 818 5.406649 TCCATGCGCCAAAGTAATTTTTAG 58.593 37.500 4.18 0.00 0.00 1.85
818 819 5.392767 TCCATGCGCCAAAGTAATTTTTA 57.607 34.783 4.18 0.00 0.00 1.52
819 820 4.264460 TCCATGCGCCAAAGTAATTTTT 57.736 36.364 4.18 0.00 0.00 1.94
820 821 3.951775 TCCATGCGCCAAAGTAATTTT 57.048 38.095 4.18 0.00 0.00 1.82
821 822 3.784338 CATCCATGCGCCAAAGTAATTT 58.216 40.909 4.18 0.00 0.00 1.82
822 823 2.481795 GCATCCATGCGCCAAAGTAATT 60.482 45.455 4.18 0.00 44.67 1.40
823 824 1.067516 GCATCCATGCGCCAAAGTAAT 59.932 47.619 4.18 0.00 44.67 1.89
824 825 0.455410 GCATCCATGCGCCAAAGTAA 59.545 50.000 4.18 0.00 44.67 2.24
825 826 2.105984 GCATCCATGCGCCAAAGTA 58.894 52.632 4.18 0.00 44.67 2.24
826 827 2.887360 GCATCCATGCGCCAAAGT 59.113 55.556 4.18 0.00 44.67 2.66
835 836 0.806868 AAGCAAGACACGCATCCATG 59.193 50.000 0.00 0.00 0.00 3.66
836 837 1.089920 GAAGCAAGACACGCATCCAT 58.910 50.000 0.00 0.00 0.00 3.41
837 838 0.955428 GGAAGCAAGACACGCATCCA 60.955 55.000 1.78 0.00 44.69 3.41
838 839 0.674895 AGGAAGCAAGACACGCATCC 60.675 55.000 0.00 0.00 45.46 3.51
839 840 1.135859 CAAGGAAGCAAGACACGCATC 60.136 52.381 0.00 0.00 0.00 3.91
840 841 0.877071 CAAGGAAGCAAGACACGCAT 59.123 50.000 0.00 0.00 0.00 4.73
841 842 0.463654 ACAAGGAAGCAAGACACGCA 60.464 50.000 0.00 0.00 0.00 5.24
842 843 0.235926 GACAAGGAAGCAAGACACGC 59.764 55.000 0.00 0.00 0.00 5.34
843 844 0.508641 CGACAAGGAAGCAAGACACG 59.491 55.000 0.00 0.00 0.00 4.49
844 845 0.868406 CCGACAAGGAAGCAAGACAC 59.132 55.000 0.00 0.00 45.00 3.67
845 846 3.305709 CCGACAAGGAAGCAAGACA 57.694 52.632 0.00 0.00 45.00 3.41
855 856 3.146066 TGGTTCAAATCTTCCGACAAGG 58.854 45.455 0.00 0.00 42.97 3.61
856 857 4.065088 TCTGGTTCAAATCTTCCGACAAG 58.935 43.478 0.00 0.00 0.00 3.16
857 858 3.813166 GTCTGGTTCAAATCTTCCGACAA 59.187 43.478 0.00 0.00 0.00 3.18
858 859 3.399330 GTCTGGTTCAAATCTTCCGACA 58.601 45.455 0.00 0.00 0.00 4.35
859 860 2.412089 CGTCTGGTTCAAATCTTCCGAC 59.588 50.000 0.00 0.00 0.00 4.79
860 861 2.036733 ACGTCTGGTTCAAATCTTCCGA 59.963 45.455 0.00 0.00 0.00 4.55
861 862 2.157668 CACGTCTGGTTCAAATCTTCCG 59.842 50.000 0.00 0.00 0.00 4.30
862 863 2.095718 GCACGTCTGGTTCAAATCTTCC 60.096 50.000 0.00 0.00 0.00 3.46
863 864 2.548057 TGCACGTCTGGTTCAAATCTTC 59.452 45.455 0.00 0.00 0.00 2.87
864 865 2.290641 GTGCACGTCTGGTTCAAATCTT 59.709 45.455 0.00 0.00 0.00 2.40
865 866 1.873591 GTGCACGTCTGGTTCAAATCT 59.126 47.619 0.00 0.00 0.00 2.40
866 867 1.873591 AGTGCACGTCTGGTTCAAATC 59.126 47.619 12.01 0.00 0.00 2.17
867 868 1.603802 CAGTGCACGTCTGGTTCAAAT 59.396 47.619 12.01 0.00 0.00 2.32
868 869 1.013596 CAGTGCACGTCTGGTTCAAA 58.986 50.000 12.01 0.00 0.00 2.69
869 870 0.176910 TCAGTGCACGTCTGGTTCAA 59.823 50.000 12.01 0.00 34.15 2.69
870 871 0.392706 ATCAGTGCACGTCTGGTTCA 59.607 50.000 12.01 0.00 34.15 3.18
871 872 0.792640 CATCAGTGCACGTCTGGTTC 59.207 55.000 12.01 0.00 34.15 3.62
872 873 0.392706 TCATCAGTGCACGTCTGGTT 59.607 50.000 12.01 0.00 34.15 3.67
873 874 0.037882 CTCATCAGTGCACGTCTGGT 60.038 55.000 12.01 0.00 34.15 4.00
874 875 1.357258 GCTCATCAGTGCACGTCTGG 61.357 60.000 12.01 1.66 34.50 3.86
875 876 1.357258 GGCTCATCAGTGCACGTCTG 61.357 60.000 12.01 10.00 36.01 3.51
876 877 1.079543 GGCTCATCAGTGCACGTCT 60.080 57.895 12.01 0.00 36.01 4.18
877 878 0.950555 TTGGCTCATCAGTGCACGTC 60.951 55.000 12.01 0.00 36.01 4.34
878 879 0.952497 CTTGGCTCATCAGTGCACGT 60.952 55.000 12.01 0.00 36.01 4.49
879 880 0.952497 ACTTGGCTCATCAGTGCACG 60.952 55.000 12.01 6.78 36.01 5.34
880 881 1.242076 AACTTGGCTCATCAGTGCAC 58.758 50.000 9.40 9.40 36.01 4.57
881 882 1.985473 AAACTTGGCTCATCAGTGCA 58.015 45.000 0.00 0.00 36.01 4.57
882 883 3.077359 ACTAAACTTGGCTCATCAGTGC 58.923 45.455 0.00 0.00 0.00 4.40
883 884 4.067896 ACACTAAACTTGGCTCATCAGTG 58.932 43.478 0.00 0.00 38.44 3.66
884 885 4.357918 ACACTAAACTTGGCTCATCAGT 57.642 40.909 0.00 0.00 0.00 3.41
885 886 4.631813 GGTACACTAAACTTGGCTCATCAG 59.368 45.833 0.00 0.00 0.00 2.90
886 887 4.041075 TGGTACACTAAACTTGGCTCATCA 59.959 41.667 0.00 0.00 0.00 3.07
887 888 4.575885 TGGTACACTAAACTTGGCTCATC 58.424 43.478 0.00 0.00 0.00 2.92
888 889 4.634012 TGGTACACTAAACTTGGCTCAT 57.366 40.909 0.00 0.00 0.00 2.90
919 920 4.019771 AGTCACCCCACAAACACAATTTTT 60.020 37.500 0.00 0.00 0.00 1.94
920 921 3.517500 AGTCACCCCACAAACACAATTTT 59.482 39.130 0.00 0.00 0.00 1.82
921 922 3.103742 AGTCACCCCACAAACACAATTT 58.896 40.909 0.00 0.00 0.00 1.82
922 923 2.745968 AGTCACCCCACAAACACAATT 58.254 42.857 0.00 0.00 0.00 2.32
923 924 2.452600 AGTCACCCCACAAACACAAT 57.547 45.000 0.00 0.00 0.00 2.71
924 925 3.367646 TTAGTCACCCCACAAACACAA 57.632 42.857 0.00 0.00 0.00 3.33
925 926 3.018149 GTTTAGTCACCCCACAAACACA 58.982 45.455 0.00 0.00 0.00 3.72
926 927 3.018149 TGTTTAGTCACCCCACAAACAC 58.982 45.455 0.00 0.00 34.97 3.32
927 928 3.054287 TCTGTTTAGTCACCCCACAAACA 60.054 43.478 0.00 0.00 36.91 2.83
928 929 3.547746 TCTGTTTAGTCACCCCACAAAC 58.452 45.455 0.00 0.00 0.00 2.93
929 930 3.815809 CTCTGTTTAGTCACCCCACAAA 58.184 45.455 0.00 0.00 0.00 2.83
930 931 2.486548 GCTCTGTTTAGTCACCCCACAA 60.487 50.000 0.00 0.00 0.00 3.33
931 932 1.071699 GCTCTGTTTAGTCACCCCACA 59.928 52.381 0.00 0.00 0.00 4.17
932 933 1.071699 TGCTCTGTTTAGTCACCCCAC 59.928 52.381 0.00 0.00 0.00 4.61
933 934 1.071699 GTGCTCTGTTTAGTCACCCCA 59.928 52.381 0.00 0.00 0.00 4.96
934 935 1.071699 TGTGCTCTGTTTAGTCACCCC 59.928 52.381 0.00 0.00 32.00 4.95
935 936 2.543777 TGTGCTCTGTTTAGTCACCC 57.456 50.000 0.00 0.00 32.00 4.61
936 937 2.160417 GCATGTGCTCTGTTTAGTCACC 59.840 50.000 0.00 0.00 38.21 4.02
937 938 2.807967 TGCATGTGCTCTGTTTAGTCAC 59.192 45.455 6.55 0.00 42.66 3.67
938 939 3.069289 CTGCATGTGCTCTGTTTAGTCA 58.931 45.455 6.55 0.00 42.66 3.41
939 940 3.329386 TCTGCATGTGCTCTGTTTAGTC 58.671 45.455 6.55 0.00 42.66 2.59
940 941 3.244353 ACTCTGCATGTGCTCTGTTTAGT 60.244 43.478 6.55 0.00 42.66 2.24
941 942 3.332919 ACTCTGCATGTGCTCTGTTTAG 58.667 45.455 6.55 0.00 42.66 1.85
942 943 3.407424 ACTCTGCATGTGCTCTGTTTA 57.593 42.857 6.55 0.00 42.66 2.01
943 944 2.267174 ACTCTGCATGTGCTCTGTTT 57.733 45.000 6.55 0.00 42.66 2.83
944 945 2.267174 AACTCTGCATGTGCTCTGTT 57.733 45.000 6.55 5.61 42.66 3.16
945 946 2.301296 AGTAACTCTGCATGTGCTCTGT 59.699 45.455 6.55 0.00 42.66 3.41
946 947 2.969990 AGTAACTCTGCATGTGCTCTG 58.030 47.619 6.55 0.00 42.66 3.35
947 948 3.244353 ACAAGTAACTCTGCATGTGCTCT 60.244 43.478 6.55 0.00 42.66 4.09
948 949 3.070018 ACAAGTAACTCTGCATGTGCTC 58.930 45.455 6.55 0.00 42.66 4.26
949 950 2.810274 CACAAGTAACTCTGCATGTGCT 59.190 45.455 6.55 0.00 42.66 4.40
950 951 3.193157 CACAAGTAACTCTGCATGTGC 57.807 47.619 0.31 0.00 42.50 4.57
951 952 2.095567 GGCACAAGTAACTCTGCATGTG 60.096 50.000 8.15 8.15 40.72 3.21
952 953 2.154462 GGCACAAGTAACTCTGCATGT 58.846 47.619 0.00 0.00 0.00 3.21
953 954 2.153645 TGGCACAAGTAACTCTGCATG 58.846 47.619 0.00 0.00 31.92 4.06
954 955 2.566833 TGGCACAAGTAACTCTGCAT 57.433 45.000 0.00 0.00 31.92 3.96
967 968 0.810648 GATTGGATTCGCTTGGCACA 59.189 50.000 0.00 0.00 0.00 4.57
968 969 0.101219 GGATTGGATTCGCTTGGCAC 59.899 55.000 0.00 0.00 0.00 5.01
969 970 0.323269 TGGATTGGATTCGCTTGGCA 60.323 50.000 0.00 0.00 0.00 4.92
970 971 1.035139 ATGGATTGGATTCGCTTGGC 58.965 50.000 0.00 0.00 0.00 4.52
971 972 2.287188 CGAATGGATTGGATTCGCTTGG 60.287 50.000 0.00 0.00 43.96 3.61
972 973 2.990941 CGAATGGATTGGATTCGCTTG 58.009 47.619 0.00 0.00 43.96 4.01
977 978 4.196193 TGTGGTACGAATGGATTGGATTC 58.804 43.478 0.00 0.00 0.00 2.52
980 981 3.704800 TTGTGGTACGAATGGATTGGA 57.295 42.857 0.00 0.00 0.00 3.53
2169 3906 5.124036 AGAATCCGATTTATTCCCCACAA 57.876 39.130 0.00 0.00 34.50 3.33
2457 4194 7.484993 TTTTCCACATGAATTTGATGGAGAT 57.515 32.000 0.00 0.00 40.47 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.