Multiple sequence alignment - TraesCS6B01G429400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G429400 chr6B 100.000 3136 0 0 1 3136 697461546 697464681 0.000000e+00 5792
1 TraesCS6B01G429400 chr6B 96.555 2264 57 3 873 3136 697534880 697537122 0.000000e+00 3729
2 TraesCS6B01G429400 chr6B 81.353 1389 199 32 987 2367 697436909 697438245 0.000000e+00 1075
3 TraesCS6B01G429400 chr6B 82.534 876 128 11 1868 2730 697528045 697528908 0.000000e+00 747
4 TraesCS6B01G429400 chr6B 86.076 632 76 8 1739 2367 697438435 697439057 0.000000e+00 669
5 TraesCS6B01G429400 chr6B 84.698 562 72 6 1310 1871 697520021 697520568 1.640000e-152 549
6 TraesCS6B01G429400 chr6B 80.782 307 27 18 710 986 697533390 697533694 8.810000e-51 211
7 TraesCS6B01G429400 chr6A 87.987 2081 193 30 474 2528 605053327 605051278 0.000000e+00 2405
8 TraesCS6B01G429400 chr6A 85.714 651 56 7 2523 3136 605050543 605049893 0.000000e+00 652
9 TraesCS6B01G429400 chr6A 89.744 117 12 0 2615 2731 605055669 605055553 1.950000e-32 150
10 TraesCS6B01G429400 chr4D 89.274 317 31 2 161 475 502380296 502379981 8.150000e-106 394
11 TraesCS6B01G429400 chr5B 83.863 409 59 6 2732 3136 626066079 626065674 1.760000e-102 383
12 TraesCS6B01G429400 chr5B 86.520 319 34 7 161 475 57100417 57100104 2.990000e-90 342
13 TraesCS6B01G429400 chr5B 94.375 160 6 2 1 160 38580287 38580131 3.120000e-60 243
14 TraesCS6B01G429400 chr7D 88.365 318 34 2 161 475 111077992 111077675 2.280000e-101 379
15 TraesCS6B01G429400 chr7D 82.108 408 64 9 2732 3136 591481876 591482277 1.080000e-89 340
16 TraesCS6B01G429400 chr4A 88.013 317 36 1 161 475 709857204 709857520 1.060000e-99 374
17 TraesCS6B01G429400 chr1D 88.088 319 30 2 161 477 441544718 441545030 3.820000e-99 372
18 TraesCS6B01G429400 chr1D 92.500 160 10 1 1 160 469043918 469043761 8.750000e-56 228
19 TraesCS6B01G429400 chr1D 75.097 257 64 0 1401 1657 7707093 7707349 1.530000e-23 121
20 TraesCS6B01G429400 chr1D 77.586 174 37 2 1391 1563 7745109 7745281 1.540000e-18 104
21 TraesCS6B01G429400 chr2B 83.168 404 62 6 2733 3133 457282431 457282831 6.390000e-97 364
22 TraesCS6B01G429400 chr2B 85.276 326 40 7 161 481 749786916 749786594 2.330000e-86 329
23 TraesCS6B01G429400 chr2B 92.500 160 10 1 1 160 161711312 161711155 8.750000e-56 228
24 TraesCS6B01G429400 chr2B 91.875 160 11 1 1 160 424440574 424440417 4.070000e-54 222
25 TraesCS6B01G429400 chr5D 82.968 411 61 7 2732 3136 502182735 502182328 2.300000e-96 363
26 TraesCS6B01G429400 chr5D 91.250 160 12 1 1 160 2621876 2622033 1.890000e-52 217
27 TraesCS6B01G429400 chr2A 82.555 407 65 6 2733 3136 522084986 522085389 1.380000e-93 353
28 TraesCS6B01G429400 chr7B 86.751 317 40 1 161 477 614900047 614899733 4.980000e-93 351
29 TraesCS6B01G429400 chr7B 94.375 160 7 1 1 160 721103055 721103212 8.690000e-61 244
30 TraesCS6B01G429400 chr7B 74.060 266 57 10 1397 1656 645256204 645256463 7.160000e-17 99
31 TraesCS6B01G429400 chr2D 86.751 317 39 3 161 475 639138152 639137837 1.790000e-92 350
32 TraesCS6B01G429400 chr1A 86.207 319 41 3 161 477 398139255 398138938 2.990000e-90 342
33 TraesCS6B01G429400 chr1A 76.136 264 49 11 1400 1656 9103940 9103684 3.280000e-25 126
34 TraesCS6B01G429400 chr5A 81.863 408 65 8 2732 3136 379830059 379829658 5.010000e-88 335
35 TraesCS6B01G429400 chr7A 81.373 408 70 6 2732 3136 644771657 644772061 8.390000e-86 327
36 TraesCS6B01G429400 chr7A 74.812 266 55 10 1397 1656 671219640 671219381 3.310000e-20 110
37 TraesCS6B01G429400 chr1B 94.375 160 7 1 1 160 196061041 196061198 8.690000e-61 244
38 TraesCS6B01G429400 chr1B 92.500 160 10 1 1 160 613001741 613001584 8.750000e-56 228
39 TraesCS6B01G429400 chr1B 75.373 268 64 2 1391 1657 349569522 349569788 9.130000e-26 128
40 TraesCS6B01G429400 chr1B 75.085 293 62 8 1389 1674 9845524 9845812 3.280000e-25 126
41 TraesCS6B01G429400 chr3B 91.875 160 11 1 1 160 603609082 603608925 4.070000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G429400 chr6B 697461546 697464681 3135 False 5792 5792 100.0000 1 3136 1 chr6B.!!$F1 3135
1 TraesCS6B01G429400 chr6B 697533390 697537122 3732 False 1970 3729 88.6685 710 3136 2 chr6B.!!$F5 2426
2 TraesCS6B01G429400 chr6B 697436909 697439057 2148 False 872 1075 83.7145 987 2367 2 chr6B.!!$F4 1380
3 TraesCS6B01G429400 chr6B 697528045 697528908 863 False 747 747 82.5340 1868 2730 1 chr6B.!!$F3 862
4 TraesCS6B01G429400 chr6B 697520021 697520568 547 False 549 549 84.6980 1310 1871 1 chr6B.!!$F2 561
5 TraesCS6B01G429400 chr6A 605049893 605055669 5776 True 1069 2405 87.8150 474 3136 3 chr6A.!!$R1 2662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.03254 GCCCAAAAGAACAGGCAGTG 59.967 55.0 0.0 0.0 45.07 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 5417 0.864797 GTATTCGGTGTCGCGACTCC 60.865 60.0 37.92 37.92 40.54 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.555782 GATTGCGTGCGCTTCACA 59.444 55.556 17.49 0.00 45.92 3.58
20 21 0.039256 ATTGCGTGCGCTTCACAATT 60.039 45.000 17.49 0.00 45.92 2.32
21 22 0.248825 TTGCGTGCGCTTCACAATTT 60.249 45.000 17.49 0.00 45.92 1.82
22 23 0.933973 TGCGTGCGCTTCACAATTTG 60.934 50.000 17.49 0.00 45.92 2.32
23 24 1.768603 CGTGCGCTTCACAATTTGC 59.231 52.632 9.73 0.00 45.92 3.68
24 25 0.933973 CGTGCGCTTCACAATTTGCA 60.934 50.000 9.73 0.00 45.92 4.08
25 26 0.503961 GTGCGCTTCACAATTTGCAC 59.496 50.000 9.73 0.00 44.98 4.57
26 27 0.385029 TGCGCTTCACAATTTGCACT 59.615 45.000 9.73 0.00 0.00 4.40
27 28 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
28 29 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
29 30 2.046313 CGCTTCACAATTTGCACTGTC 58.954 47.619 0.00 0.00 0.00 3.51
30 31 2.287188 CGCTTCACAATTTGCACTGTCT 60.287 45.455 0.00 0.00 0.00 3.41
31 32 3.047796 GCTTCACAATTTGCACTGTCTG 58.952 45.455 0.00 0.00 0.00 3.51
32 33 3.489738 GCTTCACAATTTGCACTGTCTGT 60.490 43.478 0.00 0.00 0.00 3.41
34 35 4.717233 TCACAATTTGCACTGTCTGTTT 57.283 36.364 0.00 0.00 0.00 2.83
35 36 5.070770 TCACAATTTGCACTGTCTGTTTT 57.929 34.783 0.00 0.00 0.00 2.43
50 51 2.202756 TTTTTGGGCGCGCGTTTT 60.203 50.000 32.35 0.00 0.00 2.43
51 52 1.810030 TTTTTGGGCGCGCGTTTTT 60.810 47.368 32.35 0.00 0.00 1.94
52 53 2.025359 TTTTTGGGCGCGCGTTTTTG 62.025 50.000 32.35 1.79 0.00 2.44
53 54 4.933064 TTGGGCGCGCGTTTTTGG 62.933 61.111 32.35 0.92 0.00 3.28
74 75 3.123050 GGCACCTGCTAAAACAAAGTTG 58.877 45.455 0.00 0.00 41.70 3.16
75 76 3.123050 GCACCTGCTAAAACAAAGTTGG 58.877 45.455 0.00 0.00 38.21 3.77
77 78 4.359706 CACCTGCTAAAACAAAGTTGGTC 58.640 43.478 0.00 0.00 0.00 4.02
78 79 3.383505 ACCTGCTAAAACAAAGTTGGTCC 59.616 43.478 0.00 0.00 0.00 4.46
79 80 3.243737 CCTGCTAAAACAAAGTTGGTCCC 60.244 47.826 0.00 0.00 0.00 4.46
80 81 2.359531 TGCTAAAACAAAGTTGGTCCCG 59.640 45.455 0.00 0.00 0.00 5.14
81 82 2.860971 GCTAAAACAAAGTTGGTCCCGC 60.861 50.000 0.00 0.00 0.00 6.13
82 83 0.101579 AAAACAAAGTTGGTCCCGCG 59.898 50.000 0.00 0.00 0.00 6.46
83 84 1.730451 AAACAAAGTTGGTCCCGCGG 61.730 55.000 21.04 21.04 0.00 6.46
84 85 4.038080 CAAAGTTGGTCCCGCGGC 62.038 66.667 22.85 6.98 0.00 6.53
93 94 2.668889 TCCCGCGGCGCTTTAAAA 60.669 55.556 30.54 6.24 0.00 1.52
94 95 2.202427 CCCGCGGCGCTTTAAAAG 60.202 61.111 30.54 12.10 0.00 2.27
95 96 2.559330 CCGCGGCGCTTTAAAAGT 59.441 55.556 30.54 0.00 0.00 2.66
96 97 1.795962 CCGCGGCGCTTTAAAAGTG 60.796 57.895 30.54 10.52 41.86 3.16
105 106 2.595386 GCTTTAAAAGTGCGATGGTGG 58.405 47.619 0.00 0.00 0.00 4.61
106 107 2.595386 CTTTAAAAGTGCGATGGTGGC 58.405 47.619 0.00 0.00 0.00 5.01
107 108 0.519519 TTAAAAGTGCGATGGTGGCG 59.480 50.000 0.00 0.00 0.00 5.69
117 118 1.886861 GATGGTGGCGCGCTATAACG 61.887 60.000 32.29 0.00 0.00 3.18
118 119 2.584143 GGTGGCGCGCTATAACGT 60.584 61.111 32.29 0.00 34.88 3.99
119 120 2.169146 GGTGGCGCGCTATAACGTT 61.169 57.895 32.29 5.88 34.88 3.99
121 122 0.922717 GTGGCGCGCTATAACGTTTA 59.077 50.000 32.29 1.77 34.88 2.01
122 123 1.523934 GTGGCGCGCTATAACGTTTAT 59.476 47.619 32.29 0.73 34.88 1.40
124 125 2.033577 TGGCGCGCTATAACGTTTATTG 60.034 45.455 32.29 0.86 34.88 1.90
126 127 2.660900 GCGCGCTATAACGTTTATTGGG 60.661 50.000 26.67 8.60 34.88 4.12
128 129 2.660900 GCGCTATAACGTTTATTGGGCG 60.661 50.000 5.91 14.79 42.37 6.13
129 130 2.660900 CGCTATAACGTTTATTGGGCGC 60.661 50.000 5.91 0.00 34.19 6.53
130 131 2.660900 GCTATAACGTTTATTGGGCGCG 60.661 50.000 5.91 0.00 0.00 6.86
132 133 0.390866 TAACGTTTATTGGGCGCGGA 60.391 50.000 5.91 0.00 0.00 5.54
133 134 1.027792 AACGTTTATTGGGCGCGGAT 61.028 50.000 8.83 0.00 0.00 4.18
135 136 0.099791 CGTTTATTGGGCGCGGATTT 59.900 50.000 8.83 0.00 0.00 2.17
136 137 1.468395 CGTTTATTGGGCGCGGATTTT 60.468 47.619 8.83 0.00 0.00 1.82
151 152 2.105128 TTTTTGTGCGGCCGTTGG 59.895 55.556 28.70 0.00 0.00 3.77
152 153 2.415608 TTTTTGTGCGGCCGTTGGA 61.416 52.632 28.70 8.23 0.00 3.53
153 154 2.343163 TTTTTGTGCGGCCGTTGGAG 62.343 55.000 28.70 0.00 0.00 3.86
155 156 3.545124 TTGTGCGGCCGTTGGAGAT 62.545 57.895 28.70 0.00 0.00 2.75
156 157 3.499737 GTGCGGCCGTTGGAGATG 61.500 66.667 28.70 0.00 0.00 2.90
159 160 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
173 174 3.596101 AGATGCTCCATCTCCAATAGGT 58.404 45.455 2.02 0.00 46.83 3.08
174 175 3.327172 AGATGCTCCATCTCCAATAGGTG 59.673 47.826 2.02 0.00 46.83 4.00
175 176 1.141657 TGCTCCATCTCCAATAGGTGC 59.858 52.381 0.00 0.00 40.15 5.01
177 178 2.843701 CTCCATCTCCAATAGGTGCAC 58.156 52.381 8.80 8.80 34.71 4.57
178 179 2.171237 CTCCATCTCCAATAGGTGCACA 59.829 50.000 20.43 0.00 34.71 4.57
179 180 2.575735 TCCATCTCCAATAGGTGCACAA 59.424 45.455 20.43 6.36 34.71 3.33
180 181 3.010027 TCCATCTCCAATAGGTGCACAAA 59.990 43.478 20.43 5.94 34.71 2.83
181 182 3.763360 CCATCTCCAATAGGTGCACAAAA 59.237 43.478 20.43 3.06 34.71 2.44
182 183 4.220382 CCATCTCCAATAGGTGCACAAAAA 59.780 41.667 20.43 0.23 34.71 1.94
183 184 5.105228 CCATCTCCAATAGGTGCACAAAAAT 60.105 40.000 20.43 2.88 34.71 1.82
185 186 6.418057 TCTCCAATAGGTGCACAAAAATTT 57.582 33.333 20.43 0.10 35.89 1.82
186 187 6.454795 TCTCCAATAGGTGCACAAAAATTTC 58.545 36.000 20.43 0.00 35.89 2.17
188 189 4.143137 CCAATAGGTGCACAAAAATTTCGC 60.143 41.667 20.43 0.00 0.00 4.70
191 192 0.111310 GTGCACAAAAATTTCGCGCC 60.111 50.000 13.17 0.00 0.00 6.53
193 194 0.943835 GCACAAAAATTTCGCGCCCT 60.944 50.000 0.00 0.00 0.00 5.19
194 195 1.667467 GCACAAAAATTTCGCGCCCTA 60.667 47.619 0.00 0.00 0.00 3.53
195 196 2.667137 CACAAAAATTTCGCGCCCTAA 58.333 42.857 0.00 0.00 0.00 2.69
196 197 3.053455 CACAAAAATTTCGCGCCCTAAA 58.947 40.909 0.00 0.06 0.00 1.85
197 198 3.491267 CACAAAAATTTCGCGCCCTAAAA 59.509 39.130 0.00 0.00 0.00 1.52
198 199 4.151512 CACAAAAATTTCGCGCCCTAAAAT 59.848 37.500 0.00 0.00 0.00 1.82
199 200 5.346281 CACAAAAATTTCGCGCCCTAAAATA 59.654 36.000 0.00 0.00 0.00 1.40
200 201 5.575218 ACAAAAATTTCGCGCCCTAAAATAG 59.425 36.000 0.00 0.00 0.00 1.73
202 203 4.976224 AATTTCGCGCCCTAAAATAGTT 57.024 36.364 0.00 0.00 0.00 2.24
203 204 4.976224 ATTTCGCGCCCTAAAATAGTTT 57.024 36.364 0.00 0.00 0.00 2.66
204 205 4.769859 TTTCGCGCCCTAAAATAGTTTT 57.230 36.364 0.00 0.00 36.67 2.43
207 208 3.310501 TCGCGCCCTAAAATAGTTTTAGC 59.689 43.478 0.00 6.54 46.75 3.09
208 209 3.064271 CGCGCCCTAAAATAGTTTTAGCA 59.936 43.478 13.91 0.00 46.75 3.49
209 210 4.261031 CGCGCCCTAAAATAGTTTTAGCAT 60.261 41.667 13.91 0.00 46.75 3.79
210 211 4.976116 GCGCCCTAAAATAGTTTTAGCATG 59.024 41.667 13.91 0.00 46.75 4.06
212 213 5.289595 GCCCTAAAATAGTTTTAGCATGCC 58.710 41.667 15.66 0.00 46.75 4.40
213 214 5.163457 GCCCTAAAATAGTTTTAGCATGCCA 60.163 40.000 15.66 0.00 46.75 4.92
214 215 6.273071 CCCTAAAATAGTTTTAGCATGCCAC 58.727 40.000 15.66 6.44 46.75 5.01
215 216 6.096846 CCCTAAAATAGTTTTAGCATGCCACT 59.903 38.462 15.66 13.69 46.75 4.00
216 217 6.974622 CCTAAAATAGTTTTAGCATGCCACTG 59.025 38.462 15.66 0.00 46.75 3.66
217 218 5.982890 AAATAGTTTTAGCATGCCACTGT 57.017 34.783 15.66 7.18 0.00 3.55
219 220 6.683974 AATAGTTTTAGCATGCCACTGTAG 57.316 37.500 15.66 0.00 0.00 2.74
220 221 2.749621 AGTTTTAGCATGCCACTGTAGC 59.250 45.455 15.66 0.00 0.00 3.58
221 222 2.487762 GTTTTAGCATGCCACTGTAGCA 59.512 45.455 15.66 2.88 45.94 3.49
222 223 2.488204 TTAGCATGCCACTGTAGCAA 57.512 45.000 15.66 0.00 44.83 3.91
223 224 2.715749 TAGCATGCCACTGTAGCAAT 57.284 45.000 15.66 0.00 44.83 3.56
225 226 2.173519 AGCATGCCACTGTAGCAATTT 58.826 42.857 15.66 0.00 44.83 1.82
227 228 3.763360 AGCATGCCACTGTAGCAATTTTA 59.237 39.130 15.66 0.00 44.83 1.52
228 229 4.107622 GCATGCCACTGTAGCAATTTTAG 58.892 43.478 6.36 0.00 44.83 1.85
229 230 4.380867 GCATGCCACTGTAGCAATTTTAGT 60.381 41.667 6.36 0.00 44.83 2.24
232 233 3.057596 GCCACTGTAGCAATTTTAGTGCA 60.058 43.478 1.86 0.00 44.74 4.57
233 234 4.475944 CCACTGTAGCAATTTTAGTGCAC 58.524 43.478 9.40 9.40 44.74 4.57
234 235 4.475944 CACTGTAGCAATTTTAGTGCACC 58.524 43.478 14.63 0.00 44.74 5.01
235 236 3.188460 ACTGTAGCAATTTTAGTGCACCG 59.812 43.478 14.63 0.00 44.74 4.94
236 237 2.486203 TGTAGCAATTTTAGTGCACCGG 59.514 45.455 14.63 0.00 44.74 5.28
237 238 1.904287 AGCAATTTTAGTGCACCGGA 58.096 45.000 14.63 0.00 44.74 5.14
239 240 1.402325 GCAATTTTAGTGCACCGGACC 60.402 52.381 14.63 0.00 41.80 4.46
240 241 1.201414 CAATTTTAGTGCACCGGACCC 59.799 52.381 14.63 0.00 0.00 4.46
241 242 0.402504 ATTTTAGTGCACCGGACCCA 59.597 50.000 14.63 0.00 0.00 4.51
242 243 0.183014 TTTTAGTGCACCGGACCCAA 59.817 50.000 14.63 0.00 0.00 4.12
243 244 0.535553 TTTAGTGCACCGGACCCAAC 60.536 55.000 14.63 0.00 0.00 3.77
244 245 1.697082 TTAGTGCACCGGACCCAACA 61.697 55.000 14.63 0.00 0.00 3.33
245 246 1.485294 TAGTGCACCGGACCCAACAT 61.485 55.000 14.63 0.00 0.00 2.71
247 248 1.900981 TGCACCGGACCCAACATTG 60.901 57.895 9.46 0.00 0.00 2.82
248 249 2.961768 CACCGGACCCAACATTGC 59.038 61.111 9.46 0.00 0.00 3.56
250 251 1.152830 ACCGGACCCAACATTGCTT 59.847 52.632 9.46 0.00 0.00 3.91
251 252 0.469144 ACCGGACCCAACATTGCTTT 60.469 50.000 9.46 0.00 0.00 3.51
252 253 1.202952 ACCGGACCCAACATTGCTTTA 60.203 47.619 9.46 0.00 0.00 1.85
254 255 1.135402 CGGACCCAACATTGCTTTAGC 60.135 52.381 0.00 0.00 42.50 3.09
267 268 3.317603 GCTTTAGCAGATGCCCAAAAA 57.682 42.857 0.14 0.00 43.38 1.94
269 270 3.244976 CTTTAGCAGATGCCCAAAAACG 58.755 45.455 0.14 0.00 43.38 3.60
270 271 0.525761 TAGCAGATGCCCAAAAACGC 59.474 50.000 0.14 0.00 43.38 4.84
271 272 2.088178 GCAGATGCCCAAAAACGCG 61.088 57.895 3.53 3.53 34.31 6.01
272 273 2.088178 CAGATGCCCAAAAACGCGC 61.088 57.895 5.73 0.00 0.00 6.86
278 279 4.933064 CCAAAAACGCGCGCCCAA 62.933 61.111 32.58 0.00 0.00 4.12
279 280 2.956964 CAAAAACGCGCGCCCAAA 60.957 55.556 32.58 0.00 0.00 3.28
280 281 2.202756 AAAAACGCGCGCCCAAAA 60.203 50.000 32.58 0.00 0.00 2.44
281 282 2.234335 AAAAACGCGCGCCCAAAAG 61.234 52.632 32.58 13.10 0.00 2.27
282 283 2.615262 AAAAACGCGCGCCCAAAAGA 62.615 50.000 32.58 0.00 0.00 2.52
283 284 2.615262 AAAACGCGCGCCCAAAAGAA 62.615 50.000 32.58 0.00 0.00 2.52
284 285 3.817274 AACGCGCGCCCAAAAGAAC 62.817 57.895 32.58 0.00 0.00 3.01
285 286 4.320928 CGCGCGCCCAAAAGAACA 62.321 61.111 27.72 0.00 0.00 3.18
286 287 2.429069 GCGCGCCCAAAAGAACAG 60.429 61.111 23.24 0.00 0.00 3.16
287 288 2.255252 CGCGCCCAAAAGAACAGG 59.745 61.111 0.00 0.00 0.00 4.00
288 289 2.049156 GCGCCCAAAAGAACAGGC 60.049 61.111 0.00 0.00 42.18 4.85
289 290 2.855514 GCGCCCAAAAGAACAGGCA 61.856 57.895 0.00 0.00 46.08 4.75
290 291 1.286880 CGCCCAAAAGAACAGGCAG 59.713 57.895 0.30 0.00 46.08 4.85
292 293 0.032540 GCCCAAAAGAACAGGCAGTG 59.967 55.000 0.00 0.00 45.07 3.66
293 294 1.402787 CCCAAAAGAACAGGCAGTGT 58.597 50.000 0.00 0.00 43.24 3.55
295 296 2.955660 CCCAAAAGAACAGGCAGTGTAA 59.044 45.455 0.00 0.00 39.03 2.41
297 298 4.039124 CCCAAAAGAACAGGCAGTGTAAAT 59.961 41.667 0.00 0.00 39.03 1.40
298 299 5.453198 CCCAAAAGAACAGGCAGTGTAAATT 60.453 40.000 0.00 0.00 39.03 1.82
299 300 5.463061 CCAAAAGAACAGGCAGTGTAAATTG 59.537 40.000 0.00 0.00 39.03 2.32
300 301 5.852282 AAAGAACAGGCAGTGTAAATTGT 57.148 34.783 0.00 0.00 39.03 2.71
301 302 4.836125 AGAACAGGCAGTGTAAATTGTG 57.164 40.909 0.00 0.00 39.03 3.33
302 303 4.460263 AGAACAGGCAGTGTAAATTGTGA 58.540 39.130 0.00 0.00 39.03 3.58
303 304 4.887071 AGAACAGGCAGTGTAAATTGTGAA 59.113 37.500 0.00 0.00 39.03 3.18
304 305 4.836125 ACAGGCAGTGTAAATTGTGAAG 57.164 40.909 0.00 0.00 37.75 3.02
305 306 3.004734 ACAGGCAGTGTAAATTGTGAAGC 59.995 43.478 0.00 0.00 37.75 3.86
306 307 3.004629 CAGGCAGTGTAAATTGTGAAGCA 59.995 43.478 0.00 0.00 0.00 3.91
307 308 3.004734 AGGCAGTGTAAATTGTGAAGCAC 59.995 43.478 0.00 0.00 34.56 4.40
308 309 2.973224 GCAGTGTAAATTGTGAAGCACG 59.027 45.455 0.00 0.00 37.14 5.34
309 310 2.973224 CAGTGTAAATTGTGAAGCACGC 59.027 45.455 0.00 0.00 37.14 5.34
311 312 0.974836 GTAAATTGTGAAGCACGCGC 59.025 50.000 5.73 0.00 37.14 6.86
312 313 0.588737 TAAATTGTGAAGCACGCGCA 59.411 45.000 5.73 0.00 42.27 6.09
313 314 0.248825 AAATTGTGAAGCACGCGCAA 60.249 45.000 5.73 0.00 42.27 4.85
314 315 0.039256 AATTGTGAAGCACGCGCAAT 60.039 45.000 5.73 2.64 45.39 3.56
315 316 0.454957 ATTGTGAAGCACGCGCAATC 60.455 50.000 5.73 0.00 41.19 2.67
317 318 3.787676 TGAAGCACGCGCAATCCG 61.788 61.111 5.73 0.00 42.27 4.18
318 319 4.520846 GAAGCACGCGCAATCCGG 62.521 66.667 5.73 0.00 42.27 5.14
328 329 2.774799 GCAATCCGGCGCCTCAAAT 61.775 57.895 26.68 9.38 0.00 2.32
332 333 0.965363 ATCCGGCGCCTCAAATTTGT 60.965 50.000 26.68 0.00 0.00 2.83
333 334 0.321741 TCCGGCGCCTCAAATTTGTA 60.322 50.000 26.68 4.40 0.00 2.41
334 335 0.098728 CCGGCGCCTCAAATTTGTAG 59.901 55.000 26.68 12.81 0.00 2.74
336 337 0.811281 GGCGCCTCAAATTTGTAGCT 59.189 50.000 22.15 0.00 0.00 3.32
337 338 1.202348 GGCGCCTCAAATTTGTAGCTT 59.798 47.619 22.15 0.00 0.00 3.74
338 339 2.352715 GGCGCCTCAAATTTGTAGCTTT 60.353 45.455 22.15 0.00 0.00 3.51
339 340 3.317150 GCGCCTCAAATTTGTAGCTTTT 58.683 40.909 23.22 0.00 0.00 2.27
343 344 6.321717 CGCCTCAAATTTGTAGCTTTTGATA 58.678 36.000 23.22 2.00 38.34 2.15
344 345 6.470235 CGCCTCAAATTTGTAGCTTTTGATAG 59.530 38.462 23.22 7.11 38.34 2.08
345 346 6.254373 GCCTCAAATTTGTAGCTTTTGATAGC 59.746 38.462 17.47 11.84 38.34 2.97
346 347 6.470235 CCTCAAATTTGTAGCTTTTGATAGCG 59.530 38.462 17.47 1.03 45.82 4.26
349 350 7.865385 TCAAATTTGTAGCTTTTGATAGCGTTT 59.135 29.630 17.47 0.00 45.82 3.60
350 351 8.487176 CAAATTTGTAGCTTTTGATAGCGTTTT 58.513 29.630 10.15 0.00 45.82 2.43
351 352 8.587952 AATTTGTAGCTTTTGATAGCGTTTTT 57.412 26.923 0.00 0.00 45.82 1.94
352 353 7.617533 TTTGTAGCTTTTGATAGCGTTTTTC 57.382 32.000 0.00 0.00 45.82 2.29
353 354 6.307031 TGTAGCTTTTGATAGCGTTTTTCA 57.693 33.333 0.00 0.00 45.82 2.69
355 356 4.229876 AGCTTTTGATAGCGTTTTTCAGC 58.770 39.130 0.00 0.00 45.82 4.26
356 357 3.058129 GCTTTTGATAGCGTTTTTCAGCG 59.942 43.478 0.00 0.00 38.61 5.18
363 364 2.026879 GTTTTTCAGCGCGCCCAA 59.973 55.556 30.33 18.36 0.00 4.12
366 367 2.400896 TTTTTCAGCGCGCCCAACTC 62.401 55.000 30.33 0.00 0.00 3.01
367 368 3.825160 TTTCAGCGCGCCCAACTCT 62.825 57.895 30.33 3.60 0.00 3.24
368 369 3.825160 TTCAGCGCGCCCAACTCTT 62.825 57.895 30.33 2.66 0.00 2.85
369 370 3.357079 CAGCGCGCCCAACTCTTT 61.357 61.111 30.33 1.73 0.00 2.52
370 371 2.594592 AGCGCGCCCAACTCTTTT 60.595 55.556 30.33 0.79 0.00 2.27
371 372 2.193536 AGCGCGCCCAACTCTTTTT 61.194 52.632 30.33 0.13 0.00 1.94
388 389 3.460857 TTTTTGCGTGCCCACTATTTT 57.539 38.095 0.00 0.00 0.00 1.82
389 390 4.585955 TTTTTGCGTGCCCACTATTTTA 57.414 36.364 0.00 0.00 0.00 1.52
390 391 3.562567 TTTGCGTGCCCACTATTTTAC 57.437 42.857 0.00 0.00 0.00 2.01
391 392 2.186532 TGCGTGCCCACTATTTTACA 57.813 45.000 0.00 0.00 0.00 2.41
392 393 2.080693 TGCGTGCCCACTATTTTACAG 58.919 47.619 0.00 0.00 0.00 2.74
393 394 1.202143 GCGTGCCCACTATTTTACAGC 60.202 52.381 0.00 0.00 0.00 4.40
394 395 2.356135 CGTGCCCACTATTTTACAGCT 58.644 47.619 0.00 0.00 0.00 4.24
396 397 3.181510 CGTGCCCACTATTTTACAGCTTC 60.182 47.826 0.00 0.00 0.00 3.86
399 400 3.181496 GCCCACTATTTTACAGCTTCTGC 60.181 47.826 0.00 0.00 34.37 4.26
413 414 1.761784 CTTCTGCTGGAGCTATCTGGT 59.238 52.381 0.00 0.00 42.66 4.00
414 415 2.755952 TCTGCTGGAGCTATCTGGTA 57.244 50.000 0.00 0.00 42.66 3.25
416 417 2.034878 CTGCTGGAGCTATCTGGTACA 58.965 52.381 0.00 0.00 42.66 2.90
417 418 2.632028 CTGCTGGAGCTATCTGGTACAT 59.368 50.000 0.00 0.00 42.66 2.29
418 419 3.829026 CTGCTGGAGCTATCTGGTACATA 59.171 47.826 0.00 0.00 42.66 2.29
419 420 4.223144 TGCTGGAGCTATCTGGTACATAA 58.777 43.478 0.00 0.00 42.66 1.90
420 421 4.653801 TGCTGGAGCTATCTGGTACATAAA 59.346 41.667 0.00 0.00 42.66 1.40
421 422 5.130311 TGCTGGAGCTATCTGGTACATAAAA 59.870 40.000 0.00 0.00 42.66 1.52
422 423 6.055588 GCTGGAGCTATCTGGTACATAAAAA 58.944 40.000 0.00 0.00 36.28 1.94
440 441 2.325509 AAACACGGATTTTAGCGTGC 57.674 45.000 0.00 0.00 35.99 5.34
442 443 1.060308 CACGGATTTTAGCGTGCGG 59.940 57.895 0.00 0.00 33.25 5.69
443 444 2.022762 CGGATTTTAGCGTGCGGC 59.977 61.111 0.00 0.00 44.05 6.53
444 445 2.407616 GGATTTTAGCGTGCGGCC 59.592 61.111 0.00 0.00 45.17 6.13
445 446 2.407616 GATTTTAGCGTGCGGCCC 59.592 61.111 0.00 0.00 45.17 5.80
446 447 2.360600 ATTTTAGCGTGCGGCCCA 60.361 55.556 0.00 0.00 45.17 5.36
447 448 2.322999 GATTTTAGCGTGCGGCCCAG 62.323 60.000 0.00 0.00 45.17 4.45
448 449 3.835790 TTTTAGCGTGCGGCCCAGT 62.836 57.895 0.00 0.00 45.17 4.00
450 451 3.835790 TTAGCGTGCGGCCCAGTTT 62.836 57.895 0.00 0.00 45.17 2.66
451 452 3.835790 TAGCGTGCGGCCCAGTTTT 62.836 57.895 0.00 0.00 45.17 2.43
452 453 4.279043 GCGTGCGGCCCAGTTTTT 62.279 61.111 0.00 0.00 34.80 1.94
453 454 2.354539 CGTGCGGCCCAGTTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
462 463 1.367102 CCAGTTTTTGGGCGCATGT 59.633 52.632 10.83 0.00 43.75 3.21
463 464 0.249826 CCAGTTTTTGGGCGCATGTT 60.250 50.000 10.83 0.00 43.75 2.71
464 465 0.860533 CAGTTTTTGGGCGCATGTTG 59.139 50.000 10.83 0.00 0.00 3.33
465 466 0.749649 AGTTTTTGGGCGCATGTTGA 59.250 45.000 10.83 0.00 0.00 3.18
466 467 1.137872 AGTTTTTGGGCGCATGTTGAA 59.862 42.857 10.83 0.00 0.00 2.69
467 468 1.526464 GTTTTTGGGCGCATGTTGAAG 59.474 47.619 10.83 0.00 0.00 3.02
468 469 1.035923 TTTTGGGCGCATGTTGAAGA 58.964 45.000 10.83 0.00 0.00 2.87
469 470 1.255882 TTTGGGCGCATGTTGAAGAT 58.744 45.000 10.83 0.00 0.00 2.40
470 471 0.527113 TTGGGCGCATGTTGAAGATG 59.473 50.000 10.83 0.00 0.00 2.90
471 472 1.226773 GGGCGCATGTTGAAGATGC 60.227 57.895 16.36 16.36 42.41 3.91
472 473 1.660560 GGGCGCATGTTGAAGATGCT 61.661 55.000 22.34 0.00 43.45 3.79
474 475 0.731417 GCGCATGTTGAAGATGCTCT 59.269 50.000 22.34 0.00 43.45 4.09
475 476 1.935873 GCGCATGTTGAAGATGCTCTA 59.064 47.619 22.34 0.00 43.45 2.43
476 477 2.352651 GCGCATGTTGAAGATGCTCTAA 59.647 45.455 22.34 0.00 43.45 2.10
477 478 3.786818 GCGCATGTTGAAGATGCTCTAAC 60.787 47.826 22.34 5.77 43.45 2.34
488 2358 5.690464 AGATGCTCTAACAGTTGATTCCT 57.310 39.130 0.00 0.00 0.00 3.36
507 2377 3.577649 CTCGTGTGAGGTGTCTTGTAT 57.422 47.619 0.00 0.00 38.65 2.29
508 2378 3.914312 CTCGTGTGAGGTGTCTTGTATT 58.086 45.455 0.00 0.00 38.65 1.89
509 2379 3.649073 TCGTGTGAGGTGTCTTGTATTG 58.351 45.455 0.00 0.00 0.00 1.90
510 2380 2.736721 CGTGTGAGGTGTCTTGTATTGG 59.263 50.000 0.00 0.00 0.00 3.16
511 2381 2.484264 GTGTGAGGTGTCTTGTATTGGC 59.516 50.000 0.00 0.00 0.00 4.52
512 2382 2.371841 TGTGAGGTGTCTTGTATTGGCT 59.628 45.455 0.00 0.00 0.00 4.75
513 2383 3.181445 TGTGAGGTGTCTTGTATTGGCTT 60.181 43.478 0.00 0.00 0.00 4.35
514 2384 3.189287 GTGAGGTGTCTTGTATTGGCTTG 59.811 47.826 0.00 0.00 0.00 4.01
515 2385 3.181445 TGAGGTGTCTTGTATTGGCTTGT 60.181 43.478 0.00 0.00 0.00 3.16
520 2390 5.234116 GGTGTCTTGTATTGGCTTGTTTTTG 59.766 40.000 0.00 0.00 0.00 2.44
531 2401 1.330213 CTTGTTTTTGGCTTTTGGGCG 59.670 47.619 0.00 0.00 44.11 6.13
534 2404 1.092345 TTTTTGGCTTTTGGGCGTGC 61.092 50.000 0.00 0.00 44.11 5.34
555 2425 3.031013 CCCTCTGTTGTTTTCCCAACTT 58.969 45.455 5.73 0.00 44.01 2.66
556 2426 3.181476 CCCTCTGTTGTTTTCCCAACTTG 60.181 47.826 5.73 0.16 44.01 3.16
560 2430 6.350612 CCTCTGTTGTTTTCCCAACTTGTTTA 60.351 38.462 5.73 0.00 44.01 2.01
561 2431 6.994221 TCTGTTGTTTTCCCAACTTGTTTAA 58.006 32.000 5.73 0.00 44.01 1.52
562 2432 7.442656 TCTGTTGTTTTCCCAACTTGTTTAAA 58.557 30.769 5.73 0.00 44.01 1.52
563 2433 7.931948 TCTGTTGTTTTCCCAACTTGTTTAAAA 59.068 29.630 5.73 0.00 44.01 1.52
588 2458 6.469782 AAATTCACACTTGGATCTGTTGTT 57.530 33.333 0.00 0.00 0.00 2.83
589 2459 4.898829 TTCACACTTGGATCTGTTGTTG 57.101 40.909 0.00 0.00 0.00 3.33
590 2460 3.884895 TCACACTTGGATCTGTTGTTGT 58.115 40.909 0.00 0.00 0.00 3.32
594 2464 5.469760 CACACTTGGATCTGTTGTTGTATGA 59.530 40.000 0.00 0.00 0.00 2.15
597 2467 7.080099 CACTTGGATCTGTTGTTGTATGAAAG 58.920 38.462 0.00 0.00 0.00 2.62
628 2498 9.363763 GGACTTTATTATAGTATAAAGCGGTCC 57.636 37.037 20.14 20.14 45.54 4.46
653 2523 4.985538 GAGAGAACTCTGATCCGGTAAA 57.014 45.455 9.16 0.00 40.61 2.01
681 2551 5.925509 TCATAGTGCAGTTAATTCCCTACC 58.074 41.667 0.00 0.00 0.00 3.18
684 2554 2.683362 GTGCAGTTAATTCCCTACCAGC 59.317 50.000 0.00 0.00 0.00 4.85
716 2586 2.140065 ATGATCCGTGATGTAGTGCG 57.860 50.000 0.00 0.00 0.00 5.34
722 2592 0.992072 CGTGATGTAGTGCGGTTCAG 59.008 55.000 0.00 0.00 0.00 3.02
737 2607 3.368843 CGGTTCAGTGGAGACATGAGATT 60.369 47.826 0.00 0.00 46.14 2.40
750 2620 7.655328 GGAGACATGAGATTATTTGTACTCCAG 59.345 40.741 0.00 0.00 36.93 3.86
773 2646 1.686052 GTTTTCAGTGCATGGTTGGGA 59.314 47.619 0.00 0.00 0.00 4.37
775 2648 0.478072 TTCAGTGCATGGTTGGGAGT 59.522 50.000 0.00 0.00 0.00 3.85
777 2650 1.604593 AGTGCATGGTTGGGAGTGC 60.605 57.895 0.00 0.00 38.05 4.40
778 2651 1.902918 GTGCATGGTTGGGAGTGCA 60.903 57.895 0.00 0.00 44.50 4.57
782 2655 1.002315 GCATGGTTGGGAGTGCAAAAT 59.998 47.619 0.00 0.00 37.52 1.82
792 2681 3.308530 GGAGTGCAAAATACACAGCAAC 58.691 45.455 0.00 0.00 40.59 4.17
795 2684 3.253188 AGTGCAAAATACACAGCAACGAT 59.747 39.130 0.00 0.00 40.59 3.73
801 2690 1.977188 TACACAGCAACGATGAGACG 58.023 50.000 0.00 0.00 39.31 4.18
833 2722 2.503765 TGGAAACTGACACAACAGGAGA 59.496 45.455 0.00 0.00 41.59 3.71
834 2723 3.134458 GGAAACTGACACAACAGGAGAG 58.866 50.000 0.00 0.00 41.59 3.20
840 2729 4.461081 ACTGACACAACAGGAGAGACTATC 59.539 45.833 0.00 0.00 41.59 2.08
865 2754 2.165998 GAGAAGAAACATTGGGCAGCT 58.834 47.619 0.00 0.00 0.00 4.24
866 2755 3.009473 AGAGAAGAAACATTGGGCAGCTA 59.991 43.478 0.00 0.00 0.00 3.32
875 2775 2.656947 TTGGGCAGCTATCCATTACC 57.343 50.000 7.88 0.00 32.48 2.85
883 2783 2.176889 GCTATCCATTACCCTCGCCTA 58.823 52.381 0.00 0.00 0.00 3.93
892 2792 0.396139 ACCCTCGCCTATCAACCGTA 60.396 55.000 0.00 0.00 0.00 4.02
929 2831 2.610873 GGTCCTACCTATCTTCCTGGG 58.389 57.143 0.00 0.00 34.73 4.45
975 4169 4.677378 CGGTTAGATACGAGCTCAAATCTG 59.323 45.833 26.70 13.49 31.38 2.90
976 4170 5.593010 GGTTAGATACGAGCTCAAATCTGT 58.407 41.667 26.70 14.11 31.38 3.41
1036 4230 3.441572 GCTTGCTTTGCCTAATTCTCAGA 59.558 43.478 0.00 0.00 0.00 3.27
1076 4270 1.079405 CGGGTCCGCATGTAACAGT 60.079 57.895 0.00 0.00 0.00 3.55
1171 4365 6.433404 GTCCTCTATCAATAATCCCTACACGA 59.567 42.308 0.00 0.00 0.00 4.35
1221 4415 4.117685 AGTCTGGTTCAAACTTCGTACAC 58.882 43.478 0.00 0.00 0.00 2.90
1232 4426 8.609478 TCAAACTTCGTACACATTTTCTTTTC 57.391 30.769 0.00 0.00 0.00 2.29
1458 4673 4.917906 AGAGGACCTTGCAAATAAGAGT 57.082 40.909 0.00 0.00 0.00 3.24
1472 4687 2.296073 AAGAGTGACCTTCTCCTCGT 57.704 50.000 0.00 0.00 32.93 4.18
1713 4928 8.857216 CGAGTTTTATTAGTTTGTCGATACACT 58.143 33.333 6.23 6.23 34.61 3.55
1866 5087 1.257743 GGCGGTGGATATGCTAGAGA 58.742 55.000 0.00 0.00 0.00 3.10
1956 5177 1.333177 GTTGGGTGGTATGGTTGCAA 58.667 50.000 0.00 0.00 0.00 4.08
2191 5415 3.954200 TGATAGGAGTGCAATGCAAAGA 58.046 40.909 10.44 0.00 41.47 2.52
2192 5416 4.334552 TGATAGGAGTGCAATGCAAAGAA 58.665 39.130 10.44 0.00 41.47 2.52
2193 5417 4.397103 TGATAGGAGTGCAATGCAAAGAAG 59.603 41.667 10.44 0.00 41.47 2.85
2333 5559 9.965902 CCTCCCTAATATAAATAGCTCAATGTT 57.034 33.333 0.00 0.00 0.00 2.71
3045 7082 6.916909 TGGTAGAAATAGGCCCAAATTATCA 58.083 36.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.385029 AGTGCAAATTGTGAAGCGCA 59.615 45.000 11.47 0.00 39.78 6.09
9 10 2.046313 GACAGTGCAAATTGTGAAGCG 58.954 47.619 4.67 0.00 0.00 4.68
10 11 3.047796 CAGACAGTGCAAATTGTGAAGC 58.952 45.455 4.67 0.00 0.00 3.86
11 12 4.297299 ACAGACAGTGCAAATTGTGAAG 57.703 40.909 4.67 0.00 0.00 3.02
12 13 4.717233 AACAGACAGTGCAAATTGTGAA 57.283 36.364 4.67 0.00 0.00 3.18
13 14 4.717233 AAACAGACAGTGCAAATTGTGA 57.283 36.364 4.67 0.00 0.00 3.58
14 15 5.783100 AAAAACAGACAGTGCAAATTGTG 57.217 34.783 4.67 0.00 0.00 3.33
34 35 2.202756 AAAAACGCGCGCCCAAAA 60.203 50.000 32.58 0.00 0.00 2.44
35 36 2.956964 CAAAAACGCGCGCCCAAA 60.957 55.556 32.58 0.00 0.00 3.28
43 44 2.354539 CAGGTGCCCAAAAACGCG 60.355 61.111 3.53 3.53 0.00 6.01
44 45 1.801309 TAGCAGGTGCCCAAAAACGC 61.801 55.000 0.00 0.00 43.38 4.84
45 46 0.671251 TTAGCAGGTGCCCAAAAACG 59.329 50.000 0.00 0.00 43.38 3.60
46 47 2.869801 GTTTTAGCAGGTGCCCAAAAAC 59.130 45.455 15.98 15.98 43.38 2.43
47 48 2.501723 TGTTTTAGCAGGTGCCCAAAAA 59.498 40.909 11.57 7.95 43.38 1.94
48 49 2.111384 TGTTTTAGCAGGTGCCCAAAA 58.889 42.857 0.00 3.45 43.38 2.44
50 51 1.781786 TTGTTTTAGCAGGTGCCCAA 58.218 45.000 0.00 0.00 43.38 4.12
51 52 1.686052 CTTTGTTTTAGCAGGTGCCCA 59.314 47.619 0.00 0.00 43.38 5.36
52 53 1.686587 ACTTTGTTTTAGCAGGTGCCC 59.313 47.619 0.00 0.00 43.38 5.36
53 54 3.123050 CAACTTTGTTTTAGCAGGTGCC 58.877 45.455 0.00 0.00 43.38 5.01
54 55 3.123050 CCAACTTTGTTTTAGCAGGTGC 58.877 45.455 0.00 0.00 42.49 5.01
57 58 3.243737 GGGACCAACTTTGTTTTAGCAGG 60.244 47.826 0.00 0.00 0.00 4.85
58 59 3.550030 CGGGACCAACTTTGTTTTAGCAG 60.550 47.826 0.00 0.00 0.00 4.24
59 60 2.359531 CGGGACCAACTTTGTTTTAGCA 59.640 45.455 0.00 0.00 0.00 3.49
60 61 2.860971 GCGGGACCAACTTTGTTTTAGC 60.861 50.000 0.00 0.00 0.00 3.09
61 62 2.603652 CGCGGGACCAACTTTGTTTTAG 60.604 50.000 0.00 0.00 0.00 1.85
63 64 0.101579 CGCGGGACCAACTTTGTTTT 59.898 50.000 0.00 0.00 0.00 2.43
64 65 1.730451 CCGCGGGACCAACTTTGTTT 61.730 55.000 20.10 0.00 0.00 2.83
66 67 2.593436 CCGCGGGACCAACTTTGT 60.593 61.111 20.10 0.00 0.00 2.83
67 68 4.038080 GCCGCGGGACCAACTTTG 62.038 66.667 29.38 0.00 0.00 2.77
75 76 2.844224 CTTTTAAAGCGCCGCGGGAC 62.844 60.000 29.38 10.39 0.00 4.46
77 78 2.202427 CTTTTAAAGCGCCGCGGG 60.202 61.111 29.38 18.25 0.00 6.13
78 79 1.795962 CACTTTTAAAGCGCCGCGG 60.796 57.895 24.05 24.05 0.00 6.46
79 80 2.425394 GCACTTTTAAAGCGCCGCG 61.425 57.895 8.83 8.83 30.51 6.46
80 81 2.425394 CGCACTTTTAAAGCGCCGC 61.425 57.895 11.42 0.00 45.14 6.53
81 82 3.735894 CGCACTTTTAAAGCGCCG 58.264 55.556 11.42 5.27 45.14 6.46
86 87 2.595386 GCCACCATCGCACTTTTAAAG 58.405 47.619 2.81 2.81 0.00 1.85
88 89 0.519519 CGCCACCATCGCACTTTTAA 59.480 50.000 0.00 0.00 0.00 1.52
89 90 2.167161 CGCCACCATCGCACTTTTA 58.833 52.632 0.00 0.00 0.00 1.52
90 91 2.953821 CGCCACCATCGCACTTTT 59.046 55.556 0.00 0.00 0.00 2.27
97 98 1.663388 TTATAGCGCGCCACCATCG 60.663 57.895 30.33 0.00 0.00 3.84
98 99 1.860078 GTTATAGCGCGCCACCATC 59.140 57.895 30.33 10.76 0.00 3.51
99 100 1.954146 CGTTATAGCGCGCCACCAT 60.954 57.895 30.33 18.09 0.00 3.55
100 101 2.583868 CGTTATAGCGCGCCACCA 60.584 61.111 30.33 11.46 0.00 4.17
101 102 1.698714 AAACGTTATAGCGCGCCACC 61.699 55.000 30.33 10.66 34.88 4.61
103 104 1.855513 ATAAACGTTATAGCGCGCCA 58.144 45.000 30.33 16.82 34.88 5.69
104 105 2.556806 CAATAAACGTTATAGCGCGCC 58.443 47.619 30.33 11.30 34.88 6.53
105 106 2.556806 CCAATAAACGTTATAGCGCGC 58.443 47.619 26.66 26.66 34.88 6.86
106 107 2.660900 GCCCAATAAACGTTATAGCGCG 60.661 50.000 9.05 0.00 34.88 6.86
107 108 2.660900 CGCCCAATAAACGTTATAGCGC 60.661 50.000 9.05 0.00 34.23 5.92
108 109 2.660900 GCGCCCAATAAACGTTATAGCG 60.661 50.000 17.85 17.85 43.58 4.26
111 112 1.865970 CCGCGCCCAATAAACGTTATA 59.134 47.619 0.00 0.00 0.00 0.98
113 114 0.390866 TCCGCGCCCAATAAACGTTA 60.391 50.000 0.00 0.00 0.00 3.18
117 118 2.287393 AAAATCCGCGCCCAATAAAC 57.713 45.000 0.00 0.00 0.00 2.01
135 136 2.829003 TCCAACGGCCGCACAAAA 60.829 55.556 28.58 2.77 0.00 2.44
136 137 3.283684 CTCCAACGGCCGCACAAA 61.284 61.111 28.58 6.34 0.00 2.83
142 143 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
153 154 3.672808 CACCTATTGGAGATGGAGCATC 58.327 50.000 0.00 0.00 37.69 3.91
155 156 1.141657 GCACCTATTGGAGATGGAGCA 59.858 52.381 0.00 0.00 36.45 4.26
156 157 1.141657 TGCACCTATTGGAGATGGAGC 59.858 52.381 0.00 0.00 36.85 4.70
158 159 2.195727 TGTGCACCTATTGGAGATGGA 58.804 47.619 15.69 0.00 37.04 3.41
159 160 2.715749 TGTGCACCTATTGGAGATGG 57.284 50.000 15.69 0.00 37.04 3.51
163 164 5.345741 CGAAATTTTTGTGCACCTATTGGAG 59.654 40.000 15.69 0.00 37.04 3.86
168 169 3.241701 CGCGAAATTTTTGTGCACCTAT 58.758 40.909 15.69 0.00 0.00 2.57
169 170 2.656085 CGCGAAATTTTTGTGCACCTA 58.344 42.857 15.69 0.00 0.00 3.08
170 171 1.486439 CGCGAAATTTTTGTGCACCT 58.514 45.000 15.69 0.00 0.00 4.00
171 172 0.111310 GCGCGAAATTTTTGTGCACC 60.111 50.000 23.71 0.00 38.89 5.01
172 173 0.111310 GGCGCGAAATTTTTGTGCAC 60.111 50.000 27.56 10.75 40.74 4.57
173 174 1.218230 GGGCGCGAAATTTTTGTGCA 61.218 50.000 27.56 0.00 40.74 4.57
174 175 0.943835 AGGGCGCGAAATTTTTGTGC 60.944 50.000 21.55 21.55 38.36 4.57
175 176 2.339728 TAGGGCGCGAAATTTTTGTG 57.660 45.000 12.10 5.69 0.00 3.33
177 178 4.919677 ATTTTAGGGCGCGAAATTTTTG 57.080 36.364 12.10 0.00 0.00 2.44
178 179 5.716094 ACTATTTTAGGGCGCGAAATTTTT 58.284 33.333 12.10 5.60 0.00 1.94
179 180 5.319140 ACTATTTTAGGGCGCGAAATTTT 57.681 34.783 12.10 7.47 0.00 1.82
180 181 4.976224 ACTATTTTAGGGCGCGAAATTT 57.024 36.364 12.10 9.37 0.00 1.82
181 182 4.976224 AACTATTTTAGGGCGCGAAATT 57.024 36.364 12.10 13.46 0.00 1.82
182 183 4.976224 AAACTATTTTAGGGCGCGAAAT 57.024 36.364 12.10 9.25 0.00 2.17
183 184 4.769859 AAAACTATTTTAGGGCGCGAAA 57.230 36.364 12.10 4.94 0.00 3.46
193 194 7.461182 ACAGTGGCATGCTAAAACTATTTTA 57.539 32.000 18.92 0.00 34.19 1.52
194 195 6.345096 ACAGTGGCATGCTAAAACTATTTT 57.655 33.333 18.92 0.30 36.67 1.82
195 196 5.982890 ACAGTGGCATGCTAAAACTATTT 57.017 34.783 18.92 2.45 0.00 1.40
196 197 5.066505 GCTACAGTGGCATGCTAAAACTATT 59.933 40.000 18.92 9.07 0.00 1.73
197 198 4.576463 GCTACAGTGGCATGCTAAAACTAT 59.424 41.667 18.92 8.33 0.00 2.12
198 199 3.938963 GCTACAGTGGCATGCTAAAACTA 59.061 43.478 18.92 2.34 0.00 2.24
199 200 2.749621 GCTACAGTGGCATGCTAAAACT 59.250 45.455 18.92 13.07 0.00 2.66
200 201 2.487762 TGCTACAGTGGCATGCTAAAAC 59.512 45.455 18.92 11.01 34.56 2.43
202 203 2.488204 TGCTACAGTGGCATGCTAAA 57.512 45.000 18.92 0.42 34.56 1.85
203 204 2.488204 TTGCTACAGTGGCATGCTAA 57.512 45.000 18.92 3.29 39.54 3.09
204 205 2.715749 ATTGCTACAGTGGCATGCTA 57.284 45.000 18.92 9.16 39.54 3.49
206 207 2.660189 AAATTGCTACAGTGGCATGC 57.340 45.000 13.03 9.90 39.54 4.06
207 208 5.097529 CACTAAAATTGCTACAGTGGCATG 58.902 41.667 13.03 2.23 39.54 4.06
208 209 4.380867 GCACTAAAATTGCTACAGTGGCAT 60.381 41.667 13.03 0.00 39.54 4.40
209 210 3.057596 GCACTAAAATTGCTACAGTGGCA 60.058 43.478 7.65 7.65 37.63 4.92
210 211 3.057596 TGCACTAAAATTGCTACAGTGGC 60.058 43.478 0.99 0.99 40.86 5.01
212 213 4.475944 GGTGCACTAAAATTGCTACAGTG 58.524 43.478 17.98 0.00 40.86 3.66
213 214 3.188460 CGGTGCACTAAAATTGCTACAGT 59.812 43.478 17.98 0.00 40.86 3.55
214 215 3.426159 CCGGTGCACTAAAATTGCTACAG 60.426 47.826 17.98 0.00 40.86 2.74
215 216 2.486203 CCGGTGCACTAAAATTGCTACA 59.514 45.455 17.98 0.00 40.86 2.74
216 217 2.745281 TCCGGTGCACTAAAATTGCTAC 59.255 45.455 17.98 0.00 40.86 3.58
217 218 2.745281 GTCCGGTGCACTAAAATTGCTA 59.255 45.455 17.98 0.00 40.86 3.49
219 220 1.402325 GGTCCGGTGCACTAAAATTGC 60.402 52.381 17.98 0.00 40.63 3.56
220 221 1.201414 GGGTCCGGTGCACTAAAATTG 59.799 52.381 17.98 0.00 0.00 2.32
221 222 1.202952 TGGGTCCGGTGCACTAAAATT 60.203 47.619 17.98 0.00 0.00 1.82
222 223 0.402504 TGGGTCCGGTGCACTAAAAT 59.597 50.000 17.98 0.00 0.00 1.82
223 224 0.183014 TTGGGTCCGGTGCACTAAAA 59.817 50.000 17.98 0.00 0.00 1.52
225 226 1.071814 GTTGGGTCCGGTGCACTAA 59.928 57.895 17.98 0.00 0.00 2.24
227 228 2.351924 AATGTTGGGTCCGGTGCACT 62.352 55.000 17.98 0.00 0.00 4.40
228 229 1.901464 AATGTTGGGTCCGGTGCAC 60.901 57.895 8.80 8.80 0.00 4.57
229 230 1.900981 CAATGTTGGGTCCGGTGCA 60.901 57.895 0.00 0.00 0.00 4.57
232 233 0.469144 AAAGCAATGTTGGGTCCGGT 60.469 50.000 0.00 0.00 0.00 5.28
233 234 1.472480 CTAAAGCAATGTTGGGTCCGG 59.528 52.381 0.00 0.00 0.00 5.14
234 235 1.135402 GCTAAAGCAATGTTGGGTCCG 60.135 52.381 0.00 0.00 41.59 4.79
235 236 2.654749 GCTAAAGCAATGTTGGGTCC 57.345 50.000 0.00 0.00 41.59 4.46
247 248 2.995939 GTTTTTGGGCATCTGCTAAAGC 59.004 45.455 1.70 0.00 41.70 3.51
248 249 3.244976 CGTTTTTGGGCATCTGCTAAAG 58.755 45.455 1.70 0.00 41.70 1.85
250 251 1.067915 GCGTTTTTGGGCATCTGCTAA 60.068 47.619 1.70 0.00 41.70 3.09
251 252 0.525761 GCGTTTTTGGGCATCTGCTA 59.474 50.000 1.70 0.00 41.70 3.49
252 253 1.290009 GCGTTTTTGGGCATCTGCT 59.710 52.632 1.70 0.00 41.70 4.24
254 255 2.088178 GCGCGTTTTTGGGCATCTG 61.088 57.895 8.43 0.00 46.11 2.90
261 262 4.933064 TTGGGCGCGCGTTTTTGG 62.933 61.111 32.35 0.92 0.00 3.28
262 263 2.409580 CTTTTGGGCGCGCGTTTTTG 62.410 55.000 32.35 10.14 0.00 2.44
263 264 2.202756 TTTTGGGCGCGCGTTTTT 60.203 50.000 32.35 0.00 0.00 1.94
264 265 2.615262 TTCTTTTGGGCGCGCGTTTT 62.615 50.000 32.35 0.00 0.00 2.43
265 266 3.127352 TTCTTTTGGGCGCGCGTTT 62.127 52.632 32.35 0.00 0.00 3.60
266 267 3.587933 TTCTTTTGGGCGCGCGTT 61.588 55.556 32.35 0.00 0.00 4.84
267 268 4.322385 GTTCTTTTGGGCGCGCGT 62.322 61.111 32.35 0.00 0.00 6.01
269 270 2.429069 CTGTTCTTTTGGGCGCGC 60.429 61.111 25.94 25.94 0.00 6.86
270 271 2.255252 CCTGTTCTTTTGGGCGCG 59.745 61.111 0.00 0.00 0.00 6.86
271 272 2.049156 GCCTGTTCTTTTGGGCGC 60.049 61.111 0.00 0.00 35.08 6.53
272 273 1.286880 CTGCCTGTTCTTTTGGGCG 59.713 57.895 0.00 0.00 46.72 6.13
277 278 6.042143 CACAATTTACACTGCCTGTTCTTTT 58.958 36.000 0.00 0.00 33.91 2.27
278 279 5.359576 TCACAATTTACACTGCCTGTTCTTT 59.640 36.000 0.00 0.00 33.91 2.52
279 280 4.887071 TCACAATTTACACTGCCTGTTCTT 59.113 37.500 0.00 0.00 33.91 2.52
280 281 4.460263 TCACAATTTACACTGCCTGTTCT 58.540 39.130 0.00 0.00 33.91 3.01
281 282 4.829064 TCACAATTTACACTGCCTGTTC 57.171 40.909 0.00 0.00 33.91 3.18
282 283 4.499696 GCTTCACAATTTACACTGCCTGTT 60.500 41.667 0.00 0.00 33.91 3.16
283 284 3.004734 GCTTCACAATTTACACTGCCTGT 59.995 43.478 0.00 0.00 36.82 4.00
284 285 3.004629 TGCTTCACAATTTACACTGCCTG 59.995 43.478 0.00 0.00 0.00 4.85
285 286 3.004734 GTGCTTCACAATTTACACTGCCT 59.995 43.478 0.00 0.00 34.08 4.75
286 287 3.308530 GTGCTTCACAATTTACACTGCC 58.691 45.455 0.00 0.00 34.08 4.85
287 288 2.973224 CGTGCTTCACAATTTACACTGC 59.027 45.455 0.00 0.00 33.40 4.40
288 289 2.973224 GCGTGCTTCACAATTTACACTG 59.027 45.455 0.00 0.00 33.40 3.66
289 290 2.349438 CGCGTGCTTCACAATTTACACT 60.349 45.455 0.00 0.00 33.40 3.55
290 291 1.969256 CGCGTGCTTCACAATTTACAC 59.031 47.619 0.00 0.00 33.40 2.90
292 293 0.974836 GCGCGTGCTTCACAATTTAC 59.025 50.000 15.02 0.00 38.39 2.01
293 294 0.588737 TGCGCGTGCTTCACAATTTA 59.411 45.000 23.16 0.00 43.34 1.40
295 296 0.039256 ATTGCGCGTGCTTCACAATT 60.039 45.000 23.16 0.00 43.34 2.32
297 298 1.082169 GATTGCGCGTGCTTCACAA 60.082 52.632 23.16 7.87 43.34 3.33
298 299 2.555782 GATTGCGCGTGCTTCACA 59.444 55.556 23.16 0.00 43.34 3.58
299 300 2.202349 GGATTGCGCGTGCTTCAC 60.202 61.111 23.16 10.51 43.34 3.18
300 301 3.787676 CGGATTGCGCGTGCTTCA 61.788 61.111 23.16 6.52 43.34 3.02
301 302 4.520846 CCGGATTGCGCGTGCTTC 62.521 66.667 23.16 17.75 43.34 3.86
311 312 0.173255 AAATTTGAGGCGCCGGATTG 59.827 50.000 23.20 0.00 0.00 2.67
312 313 0.173255 CAAATTTGAGGCGCCGGATT 59.827 50.000 23.20 16.29 0.00 3.01
313 314 0.965363 ACAAATTTGAGGCGCCGGAT 60.965 50.000 24.64 10.90 0.00 4.18
314 315 0.321741 TACAAATTTGAGGCGCCGGA 60.322 50.000 24.64 8.86 0.00 5.14
315 316 0.098728 CTACAAATTTGAGGCGCCGG 59.901 55.000 24.64 0.00 0.00 6.13
317 318 0.811281 AGCTACAAATTTGAGGCGCC 59.189 50.000 24.64 21.89 35.62 6.53
318 319 2.636768 AAGCTACAAATTTGAGGCGC 57.363 45.000 24.64 17.99 35.62 6.53
319 320 4.545610 TCAAAAGCTACAAATTTGAGGCG 58.454 39.130 24.64 13.34 37.95 5.52
320 321 6.254373 GCTATCAAAAGCTACAAATTTGAGGC 59.746 38.462 24.64 23.32 43.81 4.70
321 322 6.470235 CGCTATCAAAAGCTACAAATTTGAGG 59.530 38.462 24.64 15.88 43.81 3.86
322 323 7.023575 ACGCTATCAAAAGCTACAAATTTGAG 58.976 34.615 24.64 16.76 43.81 3.02
323 324 6.908825 ACGCTATCAAAAGCTACAAATTTGA 58.091 32.000 24.64 11.78 44.44 2.69
324 325 7.566858 AACGCTATCAAAAGCTACAAATTTG 57.433 32.000 16.67 16.67 40.49 2.32
325 326 8.587952 AAAACGCTATCAAAAGCTACAAATTT 57.412 26.923 0.00 0.00 40.49 1.82
326 327 8.587952 AAAAACGCTATCAAAAGCTACAAATT 57.412 26.923 0.00 0.00 40.49 1.82
328 329 7.197017 TGAAAAACGCTATCAAAAGCTACAAA 58.803 30.769 0.00 0.00 40.49 2.83
332 333 5.390613 GCTGAAAAACGCTATCAAAAGCTA 58.609 37.500 0.00 0.00 40.49 3.32
333 334 4.229876 GCTGAAAAACGCTATCAAAAGCT 58.770 39.130 0.00 0.00 40.49 3.74
334 335 3.058129 CGCTGAAAAACGCTATCAAAAGC 59.942 43.478 0.00 0.00 39.21 3.51
345 346 3.815569 TTGGGCGCGCTGAAAAACG 62.816 57.895 32.29 0.00 0.00 3.60
346 347 2.026879 TTGGGCGCGCTGAAAAAC 59.973 55.556 32.29 12.21 0.00 2.43
349 350 3.353836 GAGTTGGGCGCGCTGAAA 61.354 61.111 32.29 19.35 0.00 2.69
350 351 3.825160 AAGAGTTGGGCGCGCTGAA 62.825 57.895 32.29 20.42 0.00 3.02
351 352 3.825160 AAAGAGTTGGGCGCGCTGA 62.825 57.895 32.29 15.15 0.00 4.26
352 353 2.406452 AAAAAGAGTTGGGCGCGCTG 62.406 55.000 32.29 0.00 0.00 5.18
353 354 2.193536 AAAAAGAGTTGGGCGCGCT 61.194 52.632 32.29 10.98 0.00 5.92
368 369 3.460857 AAAATAGTGGGCACGCAAAAA 57.539 38.095 0.56 0.00 36.20 1.94
369 370 3.318275 TGTAAAATAGTGGGCACGCAAAA 59.682 39.130 0.56 0.00 36.20 2.44
370 371 2.885266 TGTAAAATAGTGGGCACGCAAA 59.115 40.909 0.56 0.00 36.20 3.68
371 372 2.486203 CTGTAAAATAGTGGGCACGCAA 59.514 45.455 0.56 0.00 36.20 4.85
373 374 1.202143 GCTGTAAAATAGTGGGCACGC 60.202 52.381 0.00 0.00 36.20 5.34
374 375 2.356135 AGCTGTAAAATAGTGGGCACG 58.644 47.619 0.00 0.00 36.20 5.34
375 376 4.010349 AGAAGCTGTAAAATAGTGGGCAC 58.990 43.478 0.00 0.00 0.00 5.01
376 377 4.009675 CAGAAGCTGTAAAATAGTGGGCA 58.990 43.478 0.00 0.00 0.00 5.36
377 378 3.181496 GCAGAAGCTGTAAAATAGTGGGC 60.181 47.826 0.00 0.00 37.91 5.36
392 393 1.540797 CCAGATAGCTCCAGCAGAAGC 60.541 57.143 0.48 0.00 45.16 3.86
393 394 1.761784 ACCAGATAGCTCCAGCAGAAG 59.238 52.381 0.48 0.00 45.16 2.85
394 395 1.871418 ACCAGATAGCTCCAGCAGAA 58.129 50.000 0.48 0.00 45.16 3.02
396 397 2.034878 TGTACCAGATAGCTCCAGCAG 58.965 52.381 0.48 0.00 45.16 4.24
425 426 2.746803 GCCGCACGCTAAAATCCGT 61.747 57.895 0.00 0.00 38.35 4.69
427 428 2.407616 GGCCGCACGCTAAAATCC 59.592 61.111 0.00 0.00 37.74 3.01
429 430 2.360600 TGGGCCGCACGCTAAAAT 60.361 55.556 0.00 0.00 37.74 1.82
431 432 3.835790 AACTGGGCCGCACGCTAAA 62.836 57.895 0.00 0.00 37.74 1.85
435 436 4.279043 AAAAACTGGGCCGCACGC 62.279 61.111 0.00 0.00 0.00 5.34
444 445 0.249826 AACATGCGCCCAAAAACTGG 60.250 50.000 4.18 0.00 45.97 4.00
445 446 0.860533 CAACATGCGCCCAAAAACTG 59.139 50.000 4.18 0.00 0.00 3.16
446 447 0.749649 TCAACATGCGCCCAAAAACT 59.250 45.000 4.18 0.00 0.00 2.66
447 448 1.526464 CTTCAACATGCGCCCAAAAAC 59.474 47.619 4.18 0.00 0.00 2.43
448 449 1.410517 TCTTCAACATGCGCCCAAAAA 59.589 42.857 4.18 0.00 0.00 1.94
450 451 1.067706 CATCTTCAACATGCGCCCAAA 60.068 47.619 4.18 0.00 0.00 3.28
451 452 0.527113 CATCTTCAACATGCGCCCAA 59.473 50.000 4.18 0.00 0.00 4.12
452 453 1.936436 GCATCTTCAACATGCGCCCA 61.936 55.000 4.18 0.00 37.51 5.36
453 454 1.226773 GCATCTTCAACATGCGCCC 60.227 57.895 4.18 0.00 37.51 6.13
454 455 4.389772 GCATCTTCAACATGCGCC 57.610 55.556 4.18 0.00 37.51 6.53
467 468 4.505922 CGAGGAATCAACTGTTAGAGCATC 59.494 45.833 0.00 0.00 0.00 3.91
468 469 4.081420 ACGAGGAATCAACTGTTAGAGCAT 60.081 41.667 0.00 0.00 0.00 3.79
469 470 3.258372 ACGAGGAATCAACTGTTAGAGCA 59.742 43.478 0.00 0.00 0.00 4.26
470 471 3.614616 CACGAGGAATCAACTGTTAGAGC 59.385 47.826 0.00 0.00 0.00 4.09
471 472 4.623167 CACACGAGGAATCAACTGTTAGAG 59.377 45.833 0.00 0.00 0.00 2.43
472 473 4.279922 TCACACGAGGAATCAACTGTTAGA 59.720 41.667 0.00 0.00 0.00 2.10
474 475 4.556233 CTCACACGAGGAATCAACTGTTA 58.444 43.478 0.00 0.00 35.44 2.41
475 476 3.393800 CTCACACGAGGAATCAACTGTT 58.606 45.455 0.00 0.00 35.44 3.16
476 477 3.032017 CTCACACGAGGAATCAACTGT 57.968 47.619 0.00 0.00 35.44 3.55
488 2358 3.554129 CCAATACAAGACACCTCACACGA 60.554 47.826 0.00 0.00 0.00 4.35
506 2376 3.380954 CCAAAAGCCAAAAACAAGCCAAT 59.619 39.130 0.00 0.00 0.00 3.16
507 2377 2.751806 CCAAAAGCCAAAAACAAGCCAA 59.248 40.909 0.00 0.00 0.00 4.52
508 2378 2.363683 CCAAAAGCCAAAAACAAGCCA 58.636 42.857 0.00 0.00 0.00 4.75
509 2379 1.675483 CCCAAAAGCCAAAAACAAGCC 59.325 47.619 0.00 0.00 0.00 4.35
510 2380 1.065401 GCCCAAAAGCCAAAAACAAGC 59.935 47.619 0.00 0.00 0.00 4.01
511 2381 1.330213 CGCCCAAAAGCCAAAAACAAG 59.670 47.619 0.00 0.00 0.00 3.16
512 2382 1.339151 ACGCCCAAAAGCCAAAAACAA 60.339 42.857 0.00 0.00 0.00 2.83
513 2383 0.250513 ACGCCCAAAAGCCAAAAACA 59.749 45.000 0.00 0.00 0.00 2.83
514 2384 0.655208 CACGCCCAAAAGCCAAAAAC 59.345 50.000 0.00 0.00 0.00 2.43
515 2385 1.092345 GCACGCCCAAAAGCCAAAAA 61.092 50.000 0.00 0.00 0.00 1.94
531 2401 0.673985 GGGAAAACAACAGAGGGCAC 59.326 55.000 0.00 0.00 0.00 5.01
563 2433 6.877236 ACAACAGATCCAAGTGTGAATTTTT 58.123 32.000 0.00 0.00 0.00 1.94
566 2436 5.360714 ACAACAACAGATCCAAGTGTGAATT 59.639 36.000 0.00 0.00 0.00 2.17
567 2437 4.889409 ACAACAACAGATCCAAGTGTGAAT 59.111 37.500 0.00 0.00 0.00 2.57
568 2438 4.269183 ACAACAACAGATCCAAGTGTGAA 58.731 39.130 0.00 0.00 0.00 3.18
569 2439 3.884895 ACAACAACAGATCCAAGTGTGA 58.115 40.909 0.00 0.00 0.00 3.58
570 2440 5.469760 TCATACAACAACAGATCCAAGTGTG 59.530 40.000 0.00 0.00 0.00 3.82
571 2441 5.620206 TCATACAACAACAGATCCAAGTGT 58.380 37.500 0.00 0.00 0.00 3.55
572 2442 6.558771 TTCATACAACAACAGATCCAAGTG 57.441 37.500 0.00 0.00 0.00 3.16
577 2447 7.278868 CCTCTACTTTCATACAACAACAGATCC 59.721 40.741 0.00 0.00 0.00 3.36
583 2453 7.964604 AAGTCCTCTACTTTCATACAACAAC 57.035 36.000 0.00 0.00 46.61 3.32
615 2485 6.039605 AGTTCTCTCTAAGGACCGCTTTATAC 59.960 42.308 0.00 0.00 33.40 1.47
618 2488 4.342359 AGTTCTCTCTAAGGACCGCTTTA 58.658 43.478 0.00 0.00 33.40 1.85
619 2489 3.166679 AGTTCTCTCTAAGGACCGCTTT 58.833 45.455 0.00 0.00 33.40 3.51
620 2490 2.756207 GAGTTCTCTCTAAGGACCGCTT 59.244 50.000 0.00 0.00 33.40 4.68
621 2491 2.371306 GAGTTCTCTCTAAGGACCGCT 58.629 52.381 0.00 0.00 33.40 5.52
653 2523 7.349598 AGGGAATTAACTGCACTATGATTTCT 58.650 34.615 0.00 0.00 0.00 2.52
681 2551 2.408271 TCATTTCTACCCAGCTGCTG 57.592 50.000 22.44 22.44 0.00 4.41
684 2554 2.158900 ACGGATCATTTCTACCCAGCTG 60.159 50.000 6.78 6.78 0.00 4.24
716 2586 3.902881 ATCTCATGTCTCCACTGAACC 57.097 47.619 0.00 0.00 0.00 3.62
722 2592 7.439655 GGAGTACAAATAATCTCATGTCTCCAC 59.560 40.741 13.47 0.00 38.52 4.02
737 2607 6.485313 CACTGAAAACCACTGGAGTACAAATA 59.515 38.462 0.71 0.00 0.00 1.40
750 2620 2.472816 CAACCATGCACTGAAAACCAC 58.527 47.619 0.00 0.00 0.00 4.16
773 2646 2.616376 TCGTTGCTGTGTATTTTGCACT 59.384 40.909 0.00 0.00 37.70 4.40
775 2648 3.251972 TCATCGTTGCTGTGTATTTTGCA 59.748 39.130 0.00 0.00 0.00 4.08
777 2650 5.082059 GTCTCATCGTTGCTGTGTATTTTG 58.918 41.667 0.00 0.00 0.00 2.44
778 2651 4.143115 CGTCTCATCGTTGCTGTGTATTTT 60.143 41.667 0.00 0.00 0.00 1.82
782 2655 1.402325 CCGTCTCATCGTTGCTGTGTA 60.402 52.381 0.00 0.00 0.00 2.90
792 2681 1.380524 ACTACAGTCCCGTCTCATCG 58.619 55.000 0.00 0.00 0.00 3.84
795 2684 1.202964 TCCAACTACAGTCCCGTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
801 2690 3.181458 TGTCAGTTTCCAACTACAGTCCC 60.181 47.826 0.00 0.00 40.46 4.46
818 2707 4.142271 GGATAGTCTCTCCTGTTGTGTCAG 60.142 50.000 0.00 0.00 35.45 3.51
833 2722 6.882768 ATGTTTCTTCTCTTGGGATAGTCT 57.117 37.500 0.00 0.00 0.00 3.24
834 2723 6.317391 CCAATGTTTCTTCTCTTGGGATAGTC 59.683 42.308 0.00 0.00 34.12 2.59
860 2749 1.941668 GCGAGGGTAATGGATAGCTGC 60.942 57.143 0.00 0.00 32.48 5.25
865 2754 4.055710 TGATAGGCGAGGGTAATGGATA 57.944 45.455 0.00 0.00 0.00 2.59
866 2755 2.902608 TGATAGGCGAGGGTAATGGAT 58.097 47.619 0.00 0.00 0.00 3.41
875 2775 0.742505 TGTACGGTTGATAGGCGAGG 59.257 55.000 0.00 0.00 0.00 4.63
883 2783 3.728076 ATAGACGCATGTACGGTTGAT 57.272 42.857 0.00 0.00 37.37 2.57
892 2792 3.825014 AGGACCGTTATATAGACGCATGT 59.175 43.478 10.22 5.40 39.09 3.21
975 4169 1.358725 ATGTACGTGGATGCGCACAC 61.359 55.000 14.90 17.15 40.34 3.82
976 4170 0.173708 TATGTACGTGGATGCGCACA 59.826 50.000 14.90 3.79 41.52 4.57
1036 4230 3.381983 TGCTGCCGACAGGACGAT 61.382 61.111 0.00 0.00 44.63 3.73
1067 4261 1.542492 AGGTCGTCCGACTGTTACAT 58.458 50.000 18.17 0.00 44.04 2.29
1068 4262 1.267806 GAAGGTCGTCCGACTGTTACA 59.732 52.381 18.17 0.00 44.04 2.41
1076 4270 2.939261 GCCCTTGAAGGTCGTCCGA 61.939 63.158 10.82 0.00 39.05 4.55
1171 4365 3.047807 ATACCATGCCGCCAGCTGT 62.048 57.895 13.81 0.00 44.23 4.40
1232 4426 7.114388 CGATGCAACATCCATAAATTCTCAATG 59.886 37.037 0.00 0.00 0.00 2.82
1247 4441 9.810231 AAATTAAAAACAAATCGATGCAACATC 57.190 25.926 0.00 0.00 0.00 3.06
1326 4540 3.036429 ATGCTCGTCTTCCCCTGCC 62.036 63.158 0.00 0.00 0.00 4.85
1458 4673 1.699730 TTGACACGAGGAGAAGGTCA 58.300 50.000 0.00 0.00 36.76 4.02
1472 4687 1.065345 TCTTGTTCACCGGGTTTGACA 60.065 47.619 6.32 0.00 0.00 3.58
1600 4815 2.901051 CTAGCGCGTTGGTAGGGGTG 62.901 65.000 8.43 0.00 43.47 4.61
1866 5087 1.931007 GAGCATTCCCTCAAGGCCCT 61.931 60.000 0.00 0.00 43.14 5.19
1956 5177 1.604378 CCTCGGTTCCTTGCATCCT 59.396 57.895 0.00 0.00 0.00 3.24
2191 5415 1.874345 ATTCGGTGTCGCGACTCCTT 61.874 55.000 40.89 28.80 41.47 3.36
2192 5416 1.028330 TATTCGGTGTCGCGACTCCT 61.028 55.000 40.89 30.74 41.47 3.69
2193 5417 0.864797 GTATTCGGTGTCGCGACTCC 60.865 60.000 37.92 37.92 40.54 3.85
3045 7082 8.902540 TGCAAACGATTTATCAGGAATATACT 57.097 30.769 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.