Multiple sequence alignment - TraesCS6B01G429300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G429300 chr6B 100.000 3299 0 0 1 3299 697406455 697403157 0.000000e+00 6093
1 TraesCS6B01G429300 chr6B 89.412 2229 167 35 1077 3299 696995437 696993272 0.000000e+00 2745
2 TraesCS6B01G429300 chr6B 86.257 1448 120 37 1856 3298 697227068 697225695 0.000000e+00 1498
3 TraesCS6B01G429300 chr6B 86.138 1450 119 39 1856 3298 697261023 697259649 0.000000e+00 1489
4 TraesCS6B01G429300 chr6B 85.981 1448 124 37 1856 3298 697118099 697116726 0.000000e+00 1476
5 TraesCS6B01G429300 chr6B 89.990 1039 71 20 840 1866 697119396 697118379 0.000000e+00 1312
6 TraesCS6B01G429300 chr6B 89.692 1038 78 17 840 1866 697373414 697372395 0.000000e+00 1297
7 TraesCS6B01G429300 chr6B 89.702 1039 74 21 840 1866 697228364 697227347 0.000000e+00 1295
8 TraesCS6B01G429300 chr6B 89.702 1039 74 20 840 1866 697262319 697261302 0.000000e+00 1295
9 TraesCS6B01G429300 chr6B 86.172 998 72 28 1856 2851 697372117 697371184 0.000000e+00 1018
10 TraesCS6B01G429300 chr6B 88.345 429 40 6 2872 3298 697357326 697356906 1.060000e-139 507
11 TraesCS6B01G429300 chr6B 90.357 280 24 3 1 279 18209516 18209239 6.730000e-97 364
12 TraesCS6B01G429300 chr6D 91.418 2878 161 47 458 3298 458531540 458528712 0.000000e+00 3868
13 TraesCS6B01G429300 chr6D 93.560 1444 72 10 1856 3299 458507536 458506114 0.000000e+00 2132
14 TraesCS6B01G429300 chr6D 90.682 1041 60 20 840 1866 458508974 458507957 0.000000e+00 1351
15 TraesCS6B01G429300 chr6D 90.530 264 21 2 12 272 456820294 456820556 2.440000e-91 346
16 TraesCS6B01G429300 chr6A 89.731 2493 158 44 394 2847 605101969 605104402 0.000000e+00 3096
17 TraesCS6B01G429300 chr6A 88.820 483 39 10 2819 3299 605117789 605118258 2.210000e-161 579
18 TraesCS6B01G429300 chr6A 91.007 278 22 1 1 275 162447545 162447268 4.020000e-99 372
19 TraesCS6B01G429300 chr3D 91.273 275 24 0 1 275 84573821 84573547 3.110000e-100 375
20 TraesCS6B01G429300 chr3D 90.805 261 23 1 12 272 517742654 517742395 6.780000e-92 348
21 TraesCS6B01G429300 chr7D 91.544 272 20 3 1 272 130928985 130929253 4.020000e-99 372
22 TraesCS6B01G429300 chr7D 90.110 273 26 1 12 284 92243471 92243200 1.460000e-93 353
23 TraesCS6B01G429300 chr2D 89.170 277 26 3 1 274 43739413 43739688 3.150000e-90 342
24 TraesCS6B01G429300 chr1D 90.152 264 23 2 12 273 396311196 396310934 1.130000e-89 340
25 TraesCS6B01G429300 chr4D 81.847 314 49 7 1997 2307 500529187 500529495 1.170000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G429300 chr6B 697403157 697406455 3298 True 6093.0 6093 100.0000 1 3299 1 chr6B.!!$R4 3298
1 TraesCS6B01G429300 chr6B 696993272 696995437 2165 True 2745.0 2745 89.4120 1077 3299 1 chr6B.!!$R2 2222
2 TraesCS6B01G429300 chr6B 697225695 697228364 2669 True 1396.5 1498 87.9795 840 3298 2 chr6B.!!$R6 2458
3 TraesCS6B01G429300 chr6B 697116726 697119396 2670 True 1394.0 1476 87.9855 840 3298 2 chr6B.!!$R5 2458
4 TraesCS6B01G429300 chr6B 697259649 697262319 2670 True 1392.0 1489 87.9200 840 3298 2 chr6B.!!$R7 2458
5 TraesCS6B01G429300 chr6B 697371184 697373414 2230 True 1157.5 1297 87.9320 840 2851 2 chr6B.!!$R8 2011
6 TraesCS6B01G429300 chr6D 458528712 458531540 2828 True 3868.0 3868 91.4180 458 3298 1 chr6D.!!$R1 2840
7 TraesCS6B01G429300 chr6D 458506114 458508974 2860 True 1741.5 2132 92.1210 840 3299 2 chr6D.!!$R2 2459
8 TraesCS6B01G429300 chr6A 605101969 605104402 2433 False 3096.0 3096 89.7310 394 2847 1 chr6A.!!$F1 2453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.035056 CAGCCGACCCCTCTTTTGAT 60.035 55.0 0.0 0.0 0.00 2.57 F
667 677 0.036306 ACTCCGCCGACCTTTTTGAT 59.964 50.0 0.0 0.0 0.00 2.57 F
1443 1495 0.478072 ACTTTGATGGACCTGTGCCA 59.522 50.0 0.0 0.0 40.24 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1840 1.283793 CTTGAGCAACACGGCTTGG 59.716 57.895 0.0 0.0 45.99 3.61 R
2076 2585 1.625818 ACGATGACTTTTCCTCCTGCT 59.374 47.619 0.0 0.0 0.00 4.24 R
2301 2810 2.154462 CACCTTACTTTGGGAGCACAG 58.846 52.381 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.468540 AAAGTTTAAAGGGACCTGATTGC 57.531 39.130 0.00 0.00 0.00 3.56
23 24 4.388577 AGTTTAAAGGGACCTGATTGCT 57.611 40.909 0.00 0.00 0.00 3.91
24 25 4.740902 AGTTTAAAGGGACCTGATTGCTT 58.259 39.130 0.00 0.00 0.00 3.91
25 26 5.147767 AGTTTAAAGGGACCTGATTGCTTT 58.852 37.500 0.00 0.00 0.00 3.51
26 27 5.602561 AGTTTAAAGGGACCTGATTGCTTTT 59.397 36.000 0.00 0.00 0.00 2.27
27 28 6.099701 AGTTTAAAGGGACCTGATTGCTTTTT 59.900 34.615 0.00 0.00 0.00 1.94
46 47 4.911514 TTTTAAGTTTGCAGGGACACTC 57.088 40.909 0.00 0.00 0.00 3.51
47 48 3.569194 TTAAGTTTGCAGGGACACTCA 57.431 42.857 0.00 0.00 0.00 3.41
48 49 1.680338 AAGTTTGCAGGGACACTCAC 58.320 50.000 0.00 0.00 0.00 3.51
49 50 0.546122 AGTTTGCAGGGACACTCACA 59.454 50.000 0.00 0.00 0.00 3.58
50 51 1.143684 AGTTTGCAGGGACACTCACAT 59.856 47.619 0.00 0.00 0.00 3.21
51 52 1.267806 GTTTGCAGGGACACTCACATG 59.732 52.381 0.00 0.00 0.00 3.21
52 53 0.473755 TTGCAGGGACACTCACATGT 59.526 50.000 0.00 0.00 34.78 3.21
53 54 0.250424 TGCAGGGACACTCACATGTG 60.250 55.000 20.18 20.18 43.07 3.21
54 55 0.957395 GCAGGGACACTCACATGTGG 60.957 60.000 25.16 17.57 41.84 4.17
55 56 0.321919 CAGGGACACTCACATGTGGG 60.322 60.000 24.38 24.38 41.84 4.61
56 57 1.675641 GGGACACTCACATGTGGGC 60.676 63.158 25.84 11.71 41.84 5.36
57 58 1.675641 GGACACTCACATGTGGGCC 60.676 63.158 25.84 17.15 41.84 5.80
58 59 1.675641 GACACTCACATGTGGGCCC 60.676 63.158 25.84 17.59 41.84 5.80
59 60 2.361610 CACTCACATGTGGGCCCC 60.362 66.667 25.84 11.72 33.38 5.80
60 61 2.858476 ACTCACATGTGGGCCCCA 60.858 61.111 25.84 17.75 33.38 4.96
61 62 2.044650 CTCACATGTGGGCCCCAG 60.045 66.667 25.16 10.54 32.34 4.45
62 63 2.858476 TCACATGTGGGCCCCAGT 60.858 61.111 25.16 9.69 32.34 4.00
63 64 2.118076 CACATGTGGGCCCCAGTT 59.882 61.111 22.27 4.98 32.34 3.16
64 65 2.118076 ACATGTGGGCCCCAGTTG 59.882 61.111 22.27 14.85 32.34 3.16
65 66 2.118076 CATGTGGGCCCCAGTTGT 59.882 61.111 22.27 0.00 32.34 3.32
66 67 1.978617 CATGTGGGCCCCAGTTGTC 60.979 63.158 22.27 0.00 32.34 3.18
67 68 2.468868 ATGTGGGCCCCAGTTGTCA 61.469 57.895 22.27 0.00 32.34 3.58
68 69 1.803453 ATGTGGGCCCCAGTTGTCAT 61.803 55.000 22.27 0.00 32.34 3.06
69 70 1.228862 GTGGGCCCCAGTTGTCATT 60.229 57.895 22.27 0.00 32.34 2.57
70 71 0.831711 GTGGGCCCCAGTTGTCATTT 60.832 55.000 22.27 0.00 32.34 2.32
71 72 0.780637 TGGGCCCCAGTTGTCATTTA 59.219 50.000 22.27 0.00 0.00 1.40
72 73 1.148027 TGGGCCCCAGTTGTCATTTAA 59.852 47.619 22.27 0.00 0.00 1.52
73 74 2.225496 TGGGCCCCAGTTGTCATTTAAT 60.225 45.455 22.27 0.00 0.00 1.40
74 75 2.168313 GGGCCCCAGTTGTCATTTAATG 59.832 50.000 12.23 0.00 0.00 1.90
75 76 2.168313 GGCCCCAGTTGTCATTTAATGG 59.832 50.000 5.02 0.00 0.00 3.16
76 77 2.831526 GCCCCAGTTGTCATTTAATGGT 59.168 45.455 5.02 0.00 0.00 3.55
77 78 3.260632 GCCCCAGTTGTCATTTAATGGTT 59.739 43.478 5.02 0.00 0.00 3.67
78 79 4.464597 GCCCCAGTTGTCATTTAATGGTTA 59.535 41.667 5.02 0.00 0.00 2.85
79 80 5.046950 GCCCCAGTTGTCATTTAATGGTTAA 60.047 40.000 5.02 0.00 0.00 2.01
80 81 6.519213 GCCCCAGTTGTCATTTAATGGTTAAA 60.519 38.462 5.02 0.00 39.24 1.52
81 82 6.871492 CCCCAGTTGTCATTTAATGGTTAAAC 59.129 38.462 5.02 5.31 37.88 2.01
82 83 7.437748 CCCAGTTGTCATTTAATGGTTAAACA 58.562 34.615 5.02 0.00 37.88 2.83
83 84 7.928706 CCCAGTTGTCATTTAATGGTTAAACAA 59.071 33.333 0.00 5.26 37.88 2.83
84 85 9.319143 CCAGTTGTCATTTAATGGTTAAACAAA 57.681 29.630 0.00 0.00 37.88 2.83
86 87 9.026074 AGTTGTCATTTAATGGTTAAACAAACG 57.974 29.630 0.00 0.00 37.88 3.60
87 88 7.932120 TGTCATTTAATGGTTAAACAAACGG 57.068 32.000 0.00 0.00 37.88 4.44
88 89 7.490000 TGTCATTTAATGGTTAAACAAACGGT 58.510 30.769 0.00 0.00 37.88 4.83
89 90 7.648510 TGTCATTTAATGGTTAAACAAACGGTC 59.351 33.333 0.00 0.00 37.88 4.79
90 91 7.648510 GTCATTTAATGGTTAAACAAACGGTCA 59.351 33.333 0.00 0.00 37.88 4.02
91 92 8.195436 TCATTTAATGGTTAAACAAACGGTCAA 58.805 29.630 0.00 0.00 37.88 3.18
92 93 8.818057 CATTTAATGGTTAAACAAACGGTCAAA 58.182 29.630 0.00 0.00 37.88 2.69
93 94 8.767478 TTTAATGGTTAAACAAACGGTCAAAA 57.233 26.923 0.00 0.00 39.13 2.44
94 95 6.650239 AATGGTTAAACAAACGGTCAAAAC 57.350 33.333 0.00 0.00 39.13 2.43
95 96 5.130292 TGGTTAAACAAACGGTCAAAACA 57.870 34.783 0.00 0.00 39.13 2.83
96 97 5.535333 TGGTTAAACAAACGGTCAAAACAA 58.465 33.333 0.00 0.00 39.13 2.83
97 98 6.164176 TGGTTAAACAAACGGTCAAAACAAT 58.836 32.000 0.00 0.00 39.13 2.71
98 99 6.310711 TGGTTAAACAAACGGTCAAAACAATC 59.689 34.615 0.00 0.00 39.13 2.67
99 100 6.310711 GGTTAAACAAACGGTCAAAACAATCA 59.689 34.615 0.00 0.00 39.13 2.57
100 101 7.387945 GTTAAACAAACGGTCAAAACAATCAG 58.612 34.615 0.00 0.00 0.00 2.90
101 102 4.712122 ACAAACGGTCAAAACAATCAGT 57.288 36.364 0.00 0.00 0.00 3.41
102 103 5.066968 ACAAACGGTCAAAACAATCAGTT 57.933 34.783 0.00 0.00 43.89 3.16
116 117 6.331369 ACAATCAGTTTTCTTACATGTGGG 57.669 37.500 9.11 0.80 0.00 4.61
117 118 5.163513 CAATCAGTTTTCTTACATGTGGGC 58.836 41.667 9.11 0.00 0.00 5.36
118 119 3.153919 TCAGTTTTCTTACATGTGGGCC 58.846 45.455 9.11 0.00 0.00 5.80
119 120 2.231235 CAGTTTTCTTACATGTGGGCCC 59.769 50.000 17.59 17.59 0.00 5.80
120 121 1.548719 GTTTTCTTACATGTGGGCCCC 59.451 52.381 22.27 11.72 0.00 5.80
121 122 0.780637 TTTCTTACATGTGGGCCCCA 59.219 50.000 22.27 17.75 0.00 4.96
122 123 0.780637 TTCTTACATGTGGGCCCCAA 59.219 50.000 22.27 7.85 34.18 4.12
123 124 0.039035 TCTTACATGTGGGCCCCAAC 59.961 55.000 22.27 13.01 34.18 3.77
124 125 0.039618 CTTACATGTGGGCCCCAACT 59.960 55.000 22.27 8.59 34.18 3.16
125 126 1.283613 CTTACATGTGGGCCCCAACTA 59.716 52.381 22.27 7.63 34.18 2.24
126 127 1.602440 TACATGTGGGCCCCAACTAT 58.398 50.000 22.27 5.40 34.18 2.12
127 128 0.258774 ACATGTGGGCCCCAACTATC 59.741 55.000 22.27 0.00 34.18 2.08
128 129 0.258484 CATGTGGGCCCCAACTATCA 59.742 55.000 22.27 0.00 34.18 2.15
129 130 1.133388 CATGTGGGCCCCAACTATCAT 60.133 52.381 22.27 0.00 34.18 2.45
130 131 1.900254 TGTGGGCCCCAACTATCATA 58.100 50.000 22.27 0.00 34.18 2.15
131 132 2.209758 TGTGGGCCCCAACTATCATAA 58.790 47.619 22.27 0.00 34.18 1.90
132 133 2.788807 TGTGGGCCCCAACTATCATAAT 59.211 45.455 22.27 0.00 34.18 1.28
133 134 3.181434 TGTGGGCCCCAACTATCATAATC 60.181 47.826 22.27 0.00 34.18 1.75
134 135 3.059853 TGGGCCCCAACTATCATAATCA 58.940 45.455 22.27 0.00 0.00 2.57
135 136 3.181434 TGGGCCCCAACTATCATAATCAC 60.181 47.826 22.27 0.00 0.00 3.06
136 137 3.074412 GGCCCCAACTATCATAATCACG 58.926 50.000 0.00 0.00 0.00 4.35
137 138 3.244422 GGCCCCAACTATCATAATCACGA 60.244 47.826 0.00 0.00 0.00 4.35
138 139 4.565652 GGCCCCAACTATCATAATCACGAT 60.566 45.833 0.00 0.00 0.00 3.73
139 140 4.631813 GCCCCAACTATCATAATCACGATC 59.368 45.833 0.00 0.00 0.00 3.69
140 141 5.793817 CCCCAACTATCATAATCACGATCA 58.206 41.667 0.00 0.00 0.00 2.92
141 142 6.230472 CCCCAACTATCATAATCACGATCAA 58.770 40.000 0.00 0.00 0.00 2.57
142 143 6.881065 CCCCAACTATCATAATCACGATCAAT 59.119 38.462 0.00 0.00 0.00 2.57
143 144 7.391554 CCCCAACTATCATAATCACGATCAATT 59.608 37.037 0.00 0.00 0.00 2.32
144 145 8.232513 CCCAACTATCATAATCACGATCAATTG 58.767 37.037 0.00 0.00 0.00 2.32
145 146 8.777413 CCAACTATCATAATCACGATCAATTGT 58.223 33.333 5.13 0.00 0.00 2.71
151 152 8.207521 TCATAATCACGATCAATTGTAAAGCA 57.792 30.769 5.13 0.00 0.00 3.91
152 153 8.839343 TCATAATCACGATCAATTGTAAAGCAT 58.161 29.630 5.13 0.00 0.00 3.79
153 154 9.454585 CATAATCACGATCAATTGTAAAGCATT 57.545 29.630 5.13 2.23 0.00 3.56
154 155 7.745022 AATCACGATCAATTGTAAAGCATTG 57.255 32.000 5.13 0.00 0.00 2.82
155 156 5.639757 TCACGATCAATTGTAAAGCATTGG 58.360 37.500 5.13 0.00 0.00 3.16
156 157 5.414144 TCACGATCAATTGTAAAGCATTGGA 59.586 36.000 5.13 0.00 0.00 3.53
157 158 5.512788 CACGATCAATTGTAAAGCATTGGAC 59.487 40.000 5.13 0.00 0.00 4.02
158 159 5.182950 ACGATCAATTGTAAAGCATTGGACA 59.817 36.000 5.13 0.00 0.00 4.02
159 160 6.092092 CGATCAATTGTAAAGCATTGGACAA 58.908 36.000 5.13 0.00 38.56 3.18
160 161 6.753279 CGATCAATTGTAAAGCATTGGACAAT 59.247 34.615 5.13 0.00 43.32 2.71
162 163 9.585099 GATCAATTGTAAAGCATTGGACAATTA 57.415 29.630 12.67 5.56 45.74 1.40
163 164 8.984891 TCAATTGTAAAGCATTGGACAATTAG 57.015 30.769 12.67 9.12 45.74 1.73
164 165 8.801299 TCAATTGTAAAGCATTGGACAATTAGA 58.199 29.630 12.67 10.58 45.74 2.10
165 166 9.079833 CAATTGTAAAGCATTGGACAATTAGAG 57.920 33.333 12.67 1.93 45.74 2.43
166 167 7.759489 TTGTAAAGCATTGGACAATTAGAGT 57.241 32.000 0.00 0.00 31.97 3.24
167 168 7.759489 TGTAAAGCATTGGACAATTAGAGTT 57.241 32.000 0.00 0.00 0.00 3.01
168 169 8.177119 TGTAAAGCATTGGACAATTAGAGTTT 57.823 30.769 0.00 0.00 0.00 2.66
169 170 8.637986 TGTAAAGCATTGGACAATTAGAGTTTT 58.362 29.630 0.00 0.00 0.00 2.43
170 171 9.476202 GTAAAGCATTGGACAATTAGAGTTTTT 57.524 29.630 0.00 0.00 0.00 1.94
186 187 0.747852 TTTTTGAAACAGCCGACCCC 59.252 50.000 0.00 0.00 0.00 4.95
187 188 0.106419 TTTTGAAACAGCCGACCCCT 60.106 50.000 0.00 0.00 0.00 4.79
188 189 0.536460 TTTGAAACAGCCGACCCCTC 60.536 55.000 0.00 0.00 0.00 4.30
189 190 1.415672 TTGAAACAGCCGACCCCTCT 61.416 55.000 0.00 0.00 0.00 3.69
190 191 1.375326 GAAACAGCCGACCCCTCTT 59.625 57.895 0.00 0.00 0.00 2.85
191 192 0.250770 GAAACAGCCGACCCCTCTTT 60.251 55.000 0.00 0.00 0.00 2.52
192 193 0.185175 AAACAGCCGACCCCTCTTTT 59.815 50.000 0.00 0.00 0.00 2.27
193 194 0.537371 AACAGCCGACCCCTCTTTTG 60.537 55.000 0.00 0.00 0.00 2.44
194 195 1.374947 CAGCCGACCCCTCTTTTGA 59.625 57.895 0.00 0.00 0.00 2.69
195 196 0.035056 CAGCCGACCCCTCTTTTGAT 60.035 55.000 0.00 0.00 0.00 2.57
196 197 1.209504 CAGCCGACCCCTCTTTTGATA 59.790 52.381 0.00 0.00 0.00 2.15
197 198 1.486726 AGCCGACCCCTCTTTTGATAG 59.513 52.381 0.00 0.00 0.00 2.08
198 199 1.209747 GCCGACCCCTCTTTTGATAGT 59.790 52.381 0.00 0.00 0.00 2.12
199 200 2.355818 GCCGACCCCTCTTTTGATAGTT 60.356 50.000 0.00 0.00 0.00 2.24
200 201 3.118519 GCCGACCCCTCTTTTGATAGTTA 60.119 47.826 0.00 0.00 0.00 2.24
201 202 4.444449 GCCGACCCCTCTTTTGATAGTTAT 60.444 45.833 0.00 0.00 0.00 1.89
202 203 5.298347 CCGACCCCTCTTTTGATAGTTATC 58.702 45.833 0.00 0.00 0.00 1.75
203 204 5.163343 CCGACCCCTCTTTTGATAGTTATCA 60.163 44.000 0.00 0.00 40.69 2.15
204 205 5.986135 CGACCCCTCTTTTGATAGTTATCAG 59.014 44.000 2.42 0.00 42.99 2.90
205 206 5.685728 ACCCCTCTTTTGATAGTTATCAGC 58.314 41.667 2.42 0.00 42.99 4.26
206 207 4.752101 CCCCTCTTTTGATAGTTATCAGCG 59.248 45.833 2.42 0.00 42.99 5.18
207 208 5.453339 CCCCTCTTTTGATAGTTATCAGCGA 60.453 44.000 2.42 1.31 42.99 4.93
208 209 5.694006 CCCTCTTTTGATAGTTATCAGCGAG 59.306 44.000 2.42 8.70 42.99 5.03
209 210 6.461648 CCCTCTTTTGATAGTTATCAGCGAGA 60.462 42.308 17.01 13.16 42.99 4.04
210 211 6.980978 CCTCTTTTGATAGTTATCAGCGAGAA 59.019 38.462 17.01 3.93 42.99 2.87
211 212 7.492669 CCTCTTTTGATAGTTATCAGCGAGAAA 59.507 37.037 17.01 9.16 42.99 2.52
212 213 8.771920 TCTTTTGATAGTTATCAGCGAGAAAA 57.228 30.769 2.42 0.05 42.99 2.29
213 214 9.214957 TCTTTTGATAGTTATCAGCGAGAAAAA 57.785 29.630 2.42 0.00 42.99 1.94
214 215 9.994432 CTTTTGATAGTTATCAGCGAGAAAAAT 57.006 29.630 2.42 0.00 42.99 1.82
219 220 9.944941 GATAGTTATCAGCGAGAAAAATATTCG 57.055 33.333 0.00 0.00 34.02 3.34
220 221 9.692749 ATAGTTATCAGCGAGAAAAATATTCGA 57.307 29.630 0.00 0.00 36.49 3.71
221 222 8.594881 AGTTATCAGCGAGAAAAATATTCGAT 57.405 30.769 0.00 0.00 36.49 3.59
222 223 9.692749 AGTTATCAGCGAGAAAAATATTCGATA 57.307 29.630 0.00 0.00 36.49 2.92
223 224 9.944941 GTTATCAGCGAGAAAAATATTCGATAG 57.055 33.333 0.00 0.00 36.49 2.08
224 225 9.692749 TTATCAGCGAGAAAAATATTCGATAGT 57.307 29.630 0.00 0.00 36.49 2.12
225 226 8.594881 ATCAGCGAGAAAAATATTCGATAGTT 57.405 30.769 0.00 0.00 36.49 2.24
226 227 8.420374 TCAGCGAGAAAAATATTCGATAGTTT 57.580 30.769 0.00 0.00 34.85 2.66
227 228 8.879759 TCAGCGAGAAAAATATTCGATAGTTTT 58.120 29.630 10.58 10.58 43.23 2.43
228 229 9.490663 CAGCGAGAAAAATATTCGATAGTTTTT 57.509 29.630 12.01 12.01 41.40 1.94
246 247 4.456662 TTTTTGGAACCCTAGCCTGTAA 57.543 40.909 0.00 0.00 0.00 2.41
247 248 4.456662 TTTTGGAACCCTAGCCTGTAAA 57.543 40.909 0.00 0.00 0.00 2.01
248 249 3.713826 TTGGAACCCTAGCCTGTAAAG 57.286 47.619 0.00 0.00 0.00 1.85
249 250 2.627933 TGGAACCCTAGCCTGTAAAGT 58.372 47.619 0.00 0.00 0.00 2.66
250 251 3.793712 TGGAACCCTAGCCTGTAAAGTA 58.206 45.455 0.00 0.00 0.00 2.24
251 252 3.773119 TGGAACCCTAGCCTGTAAAGTAG 59.227 47.826 0.00 0.00 0.00 2.57
252 253 3.773667 GGAACCCTAGCCTGTAAAGTAGT 59.226 47.826 0.00 0.00 0.00 2.73
253 254 4.958581 GGAACCCTAGCCTGTAAAGTAGTA 59.041 45.833 0.00 0.00 0.00 1.82
254 255 5.068855 GGAACCCTAGCCTGTAAAGTAGTAG 59.931 48.000 0.00 0.00 0.00 2.57
255 256 5.204131 ACCCTAGCCTGTAAAGTAGTAGT 57.796 43.478 0.00 0.00 0.00 2.73
256 257 5.587861 ACCCTAGCCTGTAAAGTAGTAGTT 58.412 41.667 0.00 0.00 0.00 2.24
257 258 6.021672 ACCCTAGCCTGTAAAGTAGTAGTTT 58.978 40.000 8.04 8.04 0.00 2.66
258 259 6.499699 ACCCTAGCCTGTAAAGTAGTAGTTTT 59.500 38.462 8.25 0.00 0.00 2.43
259 260 7.675619 ACCCTAGCCTGTAAAGTAGTAGTTTTA 59.324 37.037 8.25 0.00 0.00 1.52
260 261 8.702819 CCCTAGCCTGTAAAGTAGTAGTTTTAT 58.297 37.037 8.25 0.00 0.00 1.40
261 262 9.530633 CCTAGCCTGTAAAGTAGTAGTTTTATG 57.469 37.037 8.25 0.29 0.00 1.90
262 263 7.845066 AGCCTGTAAAGTAGTAGTTTTATGC 57.155 36.000 8.25 7.22 0.00 3.14
263 264 7.621796 AGCCTGTAAAGTAGTAGTTTTATGCT 58.378 34.615 8.25 8.97 0.00 3.79
264 265 7.764901 AGCCTGTAAAGTAGTAGTTTTATGCTC 59.235 37.037 8.25 0.00 0.00 4.26
265 266 7.764901 GCCTGTAAAGTAGTAGTTTTATGCTCT 59.235 37.037 8.25 0.00 0.00 4.09
266 267 9.654663 CCTGTAAAGTAGTAGTTTTATGCTCTT 57.345 33.333 8.25 0.00 0.00 2.85
273 274 9.857957 AGTAGTAGTTTTATGCTCTTTACTCAC 57.142 33.333 0.00 0.00 0.00 3.51
274 275 9.635520 GTAGTAGTTTTATGCTCTTTACTCACA 57.364 33.333 0.00 0.00 0.00 3.58
276 277 9.372369 AGTAGTTTTATGCTCTTTACTCACATC 57.628 33.333 0.00 0.00 0.00 3.06
277 278 9.151471 GTAGTTTTATGCTCTTTACTCACATCA 57.849 33.333 0.00 0.00 0.00 3.07
278 279 8.621532 AGTTTTATGCTCTTTACTCACATCAA 57.378 30.769 0.00 0.00 0.00 2.57
279 280 8.725148 AGTTTTATGCTCTTTACTCACATCAAG 58.275 33.333 0.00 0.00 0.00 3.02
280 281 6.668541 TTATGCTCTTTACTCACATCAAGC 57.331 37.500 0.00 0.00 0.00 4.01
281 282 3.338249 TGCTCTTTACTCACATCAAGCC 58.662 45.455 0.00 0.00 0.00 4.35
282 283 2.680339 GCTCTTTACTCACATCAAGCCC 59.320 50.000 0.00 0.00 0.00 5.19
283 284 3.869912 GCTCTTTACTCACATCAAGCCCA 60.870 47.826 0.00 0.00 0.00 5.36
284 285 4.521146 CTCTTTACTCACATCAAGCCCAT 58.479 43.478 0.00 0.00 0.00 4.00
285 286 4.264253 TCTTTACTCACATCAAGCCCATG 58.736 43.478 0.00 0.00 0.00 3.66
286 287 3.719268 TTACTCACATCAAGCCCATGT 57.281 42.857 0.00 0.00 34.67 3.21
287 288 2.592102 ACTCACATCAAGCCCATGTT 57.408 45.000 0.00 0.00 31.83 2.71
288 289 2.165167 ACTCACATCAAGCCCATGTTG 58.835 47.619 0.00 0.00 31.83 3.33
289 290 0.889994 TCACATCAAGCCCATGTTGC 59.110 50.000 0.00 0.00 31.83 4.17
290 291 0.604073 CACATCAAGCCCATGTTGCA 59.396 50.000 7.16 0.00 31.83 4.08
291 292 1.001068 CACATCAAGCCCATGTTGCAA 59.999 47.619 0.00 0.00 31.83 4.08
292 293 1.693062 ACATCAAGCCCATGTTGCAAA 59.307 42.857 0.00 0.00 29.75 3.68
293 294 2.104451 ACATCAAGCCCATGTTGCAAAA 59.896 40.909 0.00 0.00 29.75 2.44
294 295 2.237393 TCAAGCCCATGTTGCAAAAC 57.763 45.000 0.00 0.00 0.00 2.43
295 296 0.860533 CAAGCCCATGTTGCAAAACG 59.139 50.000 0.00 0.00 0.00 3.60
296 297 0.249826 AAGCCCATGTTGCAAAACGG 60.250 50.000 0.00 0.00 0.00 4.44
297 298 1.667510 GCCCATGTTGCAAAACGGG 60.668 57.895 16.85 16.85 34.73 5.28
298 299 1.667510 CCCATGTTGCAAAACGGGC 60.668 57.895 8.06 0.00 0.00 6.13
299 300 2.021039 CCATGTTGCAAAACGGGCG 61.021 57.895 0.00 0.00 0.00 6.13
300 301 2.021039 CATGTTGCAAAACGGGCGG 61.021 57.895 0.00 0.00 0.00 6.13
301 302 2.494530 ATGTTGCAAAACGGGCGGT 61.495 52.632 0.00 0.00 0.00 5.68
302 303 1.173444 ATGTTGCAAAACGGGCGGTA 61.173 50.000 0.00 0.00 0.00 4.02
303 304 1.081708 GTTGCAAAACGGGCGGTAG 60.082 57.895 0.00 0.00 0.00 3.18
304 305 2.262303 TTGCAAAACGGGCGGTAGG 61.262 57.895 0.00 0.00 0.00 3.18
305 306 2.670592 GCAAAACGGGCGGTAGGT 60.671 61.111 0.00 0.00 0.00 3.08
306 307 2.263021 GCAAAACGGGCGGTAGGTT 61.263 57.895 0.00 0.00 0.00 3.50
307 308 1.798234 GCAAAACGGGCGGTAGGTTT 61.798 55.000 0.00 0.00 35.54 3.27
308 309 0.039888 CAAAACGGGCGGTAGGTTTG 60.040 55.000 0.00 2.50 38.46 2.93
309 310 1.798234 AAAACGGGCGGTAGGTTTGC 61.798 55.000 0.00 0.00 34.38 3.68
313 314 3.274067 GGCGGTAGGTTTGCCTTG 58.726 61.111 0.00 0.00 44.18 3.61
314 315 2.566529 GCGGTAGGTTTGCCTTGC 59.433 61.111 0.00 0.00 44.18 4.01
315 316 2.867472 CGGTAGGTTTGCCTTGCG 59.133 61.111 0.00 0.00 44.18 4.85
316 317 2.566529 GGTAGGTTTGCCTTGCGC 59.433 61.111 0.00 0.00 44.18 6.09
317 318 1.971695 GGTAGGTTTGCCTTGCGCT 60.972 57.895 9.73 0.00 44.18 5.92
318 319 1.210155 GTAGGTTTGCCTTGCGCTG 59.790 57.895 9.73 0.76 44.18 5.18
319 320 2.625823 TAGGTTTGCCTTGCGCTGC 61.626 57.895 9.73 9.70 44.18 5.25
320 321 4.283403 GGTTTGCCTTGCGCTGCA 62.283 61.111 9.73 12.51 38.78 4.41
321 322 3.032033 GTTTGCCTTGCGCTGCAC 61.032 61.111 17.16 5.84 38.71 4.57
331 332 3.710044 CGCTGCACGCTGTATGAT 58.290 55.556 0.00 0.00 36.13 2.45
332 333 1.561730 CGCTGCACGCTGTATGATC 59.438 57.895 0.00 0.00 36.13 2.92
333 334 1.147557 CGCTGCACGCTGTATGATCA 61.148 55.000 0.00 0.00 36.13 2.92
334 335 1.009078 GCTGCACGCTGTATGATCAA 58.991 50.000 0.00 0.00 35.14 2.57
335 336 1.398041 GCTGCACGCTGTATGATCAAA 59.602 47.619 0.00 0.00 35.14 2.69
336 337 2.159531 GCTGCACGCTGTATGATCAAAA 60.160 45.455 0.00 0.00 35.14 2.44
337 338 3.488047 GCTGCACGCTGTATGATCAAAAT 60.488 43.478 0.00 0.00 35.14 1.82
338 339 4.277257 TGCACGCTGTATGATCAAAATC 57.723 40.909 0.00 0.00 0.00 2.17
339 340 3.688673 TGCACGCTGTATGATCAAAATCA 59.311 39.130 0.00 0.00 45.73 2.57
340 341 4.201841 TGCACGCTGTATGATCAAAATCAG 60.202 41.667 0.00 7.38 44.90 2.90
341 342 4.034394 GCACGCTGTATGATCAAAATCAGA 59.966 41.667 17.61 0.00 44.90 3.27
347 348 5.335827 GTATGATCAAAATCAGACGAGCC 57.664 43.478 0.00 0.00 44.90 4.70
348 349 3.333029 TGATCAAAATCAGACGAGCCA 57.667 42.857 0.00 0.00 36.98 4.75
349 350 3.264947 TGATCAAAATCAGACGAGCCAG 58.735 45.455 0.00 0.00 36.98 4.85
350 351 2.839486 TCAAAATCAGACGAGCCAGT 57.161 45.000 0.00 0.00 0.00 4.00
351 352 2.416747 TCAAAATCAGACGAGCCAGTG 58.583 47.619 0.00 0.00 0.00 3.66
352 353 1.135859 CAAAATCAGACGAGCCAGTGC 60.136 52.381 0.00 0.00 37.95 4.40
353 354 1.016130 AAATCAGACGAGCCAGTGCG 61.016 55.000 0.00 0.00 44.33 5.34
354 355 2.842394 AATCAGACGAGCCAGTGCGG 62.842 60.000 0.00 0.00 44.33 5.69
355 356 4.056125 CAGACGAGCCAGTGCGGA 62.056 66.667 0.00 0.00 44.33 5.54
356 357 3.753434 AGACGAGCCAGTGCGGAG 61.753 66.667 0.00 0.00 44.33 4.63
357 358 3.749064 GACGAGCCAGTGCGGAGA 61.749 66.667 0.00 0.00 44.33 3.71
358 359 3.973267 GACGAGCCAGTGCGGAGAC 62.973 68.421 0.00 0.00 44.33 3.36
370 371 2.509336 GGAGACGGCCACACATCG 60.509 66.667 2.24 0.00 0.00 3.84
371 372 3.188786 GAGACGGCCACACATCGC 61.189 66.667 2.24 0.00 0.00 4.58
385 386 4.709982 TCGCGTCCGAATCATGAG 57.290 55.556 5.77 0.00 41.17 2.90
386 387 1.807226 TCGCGTCCGAATCATGAGT 59.193 52.632 5.77 0.00 41.17 3.41
387 388 0.172578 TCGCGTCCGAATCATGAGTT 59.827 50.000 5.77 0.00 41.17 3.01
388 389 0.572590 CGCGTCCGAATCATGAGTTC 59.427 55.000 0.09 4.86 36.29 3.01
389 390 1.640428 GCGTCCGAATCATGAGTTCA 58.360 50.000 0.09 0.00 0.00 3.18
390 391 1.999735 GCGTCCGAATCATGAGTTCAA 59.000 47.619 0.09 0.00 0.00 2.69
391 392 2.029728 GCGTCCGAATCATGAGTTCAAG 59.970 50.000 0.09 1.16 0.00 3.02
392 393 2.604914 CGTCCGAATCATGAGTTCAAGG 59.395 50.000 0.09 1.80 0.00 3.61
400 401 2.026822 TCATGAGTTCAAGGGGAGCTTC 60.027 50.000 0.00 0.00 37.18 3.86
416 417 5.440610 GGAGCTTCTCCCAAAGATAATTCA 58.559 41.667 1.44 0.00 44.36 2.57
417 418 5.298026 GGAGCTTCTCCCAAAGATAATTCAC 59.702 44.000 1.44 0.00 44.36 3.18
422 423 4.407621 TCTCCCAAAGATAATTCACGCCTA 59.592 41.667 0.00 0.00 0.00 3.93
425 426 5.071788 TCCCAAAGATAATTCACGCCTAGAT 59.928 40.000 0.00 0.00 0.00 1.98
427 428 5.991606 CCAAAGATAATTCACGCCTAGATCA 59.008 40.000 0.00 0.00 0.00 2.92
434 435 2.950781 TCACGCCTAGATCAAGAGGAT 58.049 47.619 11.45 0.00 39.53 3.24
452 453 4.925068 AGGATCGCACAAAGCAATTATTC 58.075 39.130 0.00 0.00 46.13 1.75
453 454 4.641989 AGGATCGCACAAAGCAATTATTCT 59.358 37.500 0.00 0.00 46.13 2.40
484 485 1.877258 GCTGAGCATATCCTCACCAGC 60.877 57.143 0.00 0.00 36.96 4.85
499 500 0.896940 CCAGCCATTCTGCAGTTGGT 60.897 55.000 27.64 17.41 41.50 3.67
519 529 4.133078 GGTGGCAACCAAATGAAATGAAA 58.867 39.130 5.00 0.00 46.75 2.69
615 625 3.068590 ACCAATATAATGCCAGTGCTTGC 59.931 43.478 0.00 0.00 38.71 4.01
616 626 3.302555 CAATATAATGCCAGTGCTTGCG 58.697 45.455 0.00 0.00 38.71 4.85
628 638 0.321034 TGCTTGCGCTGTCATCTTCT 60.321 50.000 9.73 0.00 36.97 2.85
646 656 0.467659 CTAGGGCCCTACGTGCTAGT 60.468 60.000 28.66 2.20 0.00 2.57
656 666 2.202623 GTGCTAGTCACTCCGCCG 60.203 66.667 9.26 0.00 42.38 6.46
657 667 2.360726 TGCTAGTCACTCCGCCGA 60.361 61.111 0.00 0.00 0.00 5.54
658 668 2.102553 GCTAGTCACTCCGCCGAC 59.897 66.667 0.00 0.00 0.00 4.79
659 669 2.799371 CTAGTCACTCCGCCGACC 59.201 66.667 0.00 0.00 32.33 4.79
660 670 1.749638 CTAGTCACTCCGCCGACCT 60.750 63.158 0.00 0.00 32.33 3.85
662 672 0.896940 TAGTCACTCCGCCGACCTTT 60.897 55.000 0.00 0.00 32.33 3.11
663 673 1.301479 GTCACTCCGCCGACCTTTT 60.301 57.895 0.00 0.00 0.00 2.27
665 675 0.882927 TCACTCCGCCGACCTTTTTG 60.883 55.000 0.00 0.00 0.00 2.44
666 676 0.882927 CACTCCGCCGACCTTTTTGA 60.883 55.000 0.00 0.00 0.00 2.69
667 677 0.036306 ACTCCGCCGACCTTTTTGAT 59.964 50.000 0.00 0.00 0.00 2.57
668 678 1.165270 CTCCGCCGACCTTTTTGATT 58.835 50.000 0.00 0.00 0.00 2.57
669 679 1.130561 CTCCGCCGACCTTTTTGATTC 59.869 52.381 0.00 0.00 0.00 2.52
705 718 8.798859 TCTAGCTGCTAGATTTTTCAAAGATT 57.201 30.769 30.21 0.00 38.06 2.40
706 719 9.890629 TCTAGCTGCTAGATTTTTCAAAGATTA 57.109 29.630 30.21 7.28 38.06 1.75
728 741 3.589495 ACACTCGAAACCCTAGCTAAC 57.411 47.619 0.00 0.00 0.00 2.34
734 747 1.631898 GAAACCCTAGCTAACCCACCA 59.368 52.381 0.00 0.00 0.00 4.17
759 773 2.193248 GCCCTTCCCCTTGGATCG 59.807 66.667 0.00 0.00 41.40 3.69
769 783 0.949397 CCTTGGATCGTGCATGATGG 59.051 55.000 25.86 16.17 0.00 3.51
771 785 0.545646 TTGGATCGTGCATGATGGGA 59.454 50.000 25.86 8.20 0.00 4.37
802 826 4.878439 CCATAGCCATGGTCATTCATTTG 58.122 43.478 14.67 0.00 45.92 2.32
803 827 4.585581 CCATAGCCATGGTCATTCATTTGA 59.414 41.667 14.67 0.00 45.92 2.69
804 828 5.245301 CCATAGCCATGGTCATTCATTTGAT 59.755 40.000 14.67 0.00 45.92 2.57
805 829 4.931661 AGCCATGGTCATTCATTTGATC 57.068 40.909 14.67 0.00 0.00 2.92
806 830 3.317149 AGCCATGGTCATTCATTTGATCG 59.683 43.478 14.67 0.00 28.82 3.69
807 831 3.067180 GCCATGGTCATTCATTTGATCGT 59.933 43.478 14.67 0.00 28.82 3.73
808 832 4.440525 GCCATGGTCATTCATTTGATCGTT 60.441 41.667 14.67 0.00 28.82 3.85
809 833 5.653507 CCATGGTCATTCATTTGATCGTTT 58.346 37.500 2.57 0.00 28.82 3.60
825 849 5.856986 TGATCGTTTCTCTTTCGTGTTCTAG 59.143 40.000 0.00 0.00 0.00 2.43
827 851 3.673809 CGTTTCTCTTTCGTGTTCTAGGG 59.326 47.826 0.00 0.00 0.00 3.53
830 854 2.824341 TCTCTTTCGTGTTCTAGGGTCC 59.176 50.000 0.00 0.00 0.00 4.46
832 856 3.170717 TCTTTCGTGTTCTAGGGTCCAT 58.829 45.455 0.00 0.00 0.00 3.41
848 872 0.959553 CCATACGCTACCCTGTCGAT 59.040 55.000 0.00 0.00 0.00 3.59
899 923 2.744202 GTTCCACGAGAAATGACAGCAT 59.256 45.455 0.00 0.00 35.85 3.79
900 924 2.349590 TCCACGAGAAATGACAGCATG 58.650 47.619 0.00 0.00 46.00 4.06
901 925 2.028203 TCCACGAGAAATGACAGCATGA 60.028 45.455 0.00 0.00 39.69 3.07
902 926 2.350804 CCACGAGAAATGACAGCATGAG 59.649 50.000 0.00 0.00 39.69 2.90
903 927 2.005451 ACGAGAAATGACAGCATGAGC 58.995 47.619 0.00 0.00 39.69 4.26
904 928 2.004733 CGAGAAATGACAGCATGAGCA 58.995 47.619 0.00 0.00 45.49 4.26
905 929 2.417586 CGAGAAATGACAGCATGAGCAA 59.582 45.455 0.00 0.00 45.49 3.91
906 930 3.120095 CGAGAAATGACAGCATGAGCAAA 60.120 43.478 0.00 0.00 45.49 3.68
907 931 4.164294 GAGAAATGACAGCATGAGCAAAC 58.836 43.478 0.00 0.00 45.49 2.93
961 1006 3.068732 CCTTATCTGCCAGATCGAAGTGA 59.931 47.826 11.20 0.00 36.20 3.41
986 1037 2.028130 CCCGTACAGCAGAGAGAGATT 58.972 52.381 0.00 0.00 0.00 2.40
992 1043 5.221028 CGTACAGCAGAGAGAGATTGAGATT 60.221 44.000 0.00 0.00 0.00 2.40
1221 1272 1.600916 GTCCAAGCTGCCGTTCCTT 60.601 57.895 0.00 0.00 0.00 3.36
1389 1441 1.091771 CCTCCCGCTACTACGTCGAA 61.092 60.000 0.00 0.00 0.00 3.71
1443 1495 0.478072 ACTTTGATGGACCTGTGCCA 59.522 50.000 0.00 0.00 40.24 4.92
1492 1544 1.685517 CCATCTTCGAGGAGAGCATGA 59.314 52.381 2.89 0.00 0.00 3.07
1808 1863 0.602905 GCCGTGTTGCTCAAGGTACT 60.603 55.000 13.31 0.00 45.26 2.73
1809 1864 1.148310 CCGTGTTGCTCAAGGTACTG 58.852 55.000 0.00 0.00 40.86 2.74
1841 1907 8.483307 AATGTTGCACATTCTTCCATAATTTC 57.517 30.769 8.21 0.00 44.91 2.17
1844 1910 8.970020 TGTTGCACATTCTTCCATAATTTCTAT 58.030 29.630 0.00 0.00 0.00 1.98
1845 1911 9.241317 GTTGCACATTCTTCCATAATTTCTATG 57.759 33.333 0.00 0.00 0.00 2.23
1929 2432 8.797438 CAGCTTAAATTAATAAGAATCCCTCCC 58.203 37.037 2.70 0.00 35.35 4.30
1938 2443 4.846168 AAGAATCCCTCCCTAGTTTCAC 57.154 45.455 0.00 0.00 0.00 3.18
1940 2445 1.894699 ATCCCTCCCTAGTTTCACCC 58.105 55.000 0.00 0.00 0.00 4.61
1941 2446 0.797579 TCCCTCCCTAGTTTCACCCT 59.202 55.000 0.00 0.00 0.00 4.34
1942 2447 2.013006 TCCCTCCCTAGTTTCACCCTA 58.987 52.381 0.00 0.00 0.00 3.53
1943 2448 2.023307 TCCCTCCCTAGTTTCACCCTAG 60.023 54.545 0.00 0.00 33.23 3.02
1949 2454 4.479796 TCCCTAGTTTCACCCTAGCTAGTA 59.520 45.833 19.31 2.06 32.29 1.82
1950 2455 4.828387 CCCTAGTTTCACCCTAGCTAGTAG 59.172 50.000 19.31 12.49 32.29 2.57
1969 2478 7.720074 GCTAGTAGGGCTTGATTAACCTTAAAT 59.280 37.037 0.00 0.00 34.59 1.40
2076 2585 3.387947 GCCGTTCCTCCCCGAGAA 61.388 66.667 0.00 0.00 0.00 2.87
2172 2681 3.010420 CCTCATGGATATGCTCATGCTG 58.990 50.000 0.00 0.00 40.20 4.41
2301 2810 5.221722 TGTCATTGAGGTCTATCCATAAGGC 60.222 44.000 0.00 0.00 39.02 4.35
2318 2827 1.168714 GGCTGTGCTCCCAAAGTAAG 58.831 55.000 0.00 0.00 0.00 2.34
2392 2905 1.620822 AGGAGCGCCTTGTCATTTTT 58.379 45.000 1.77 0.00 43.90 1.94
2397 2910 3.791245 AGCGCCTTGTCATTTTTCAAAA 58.209 36.364 2.29 0.00 0.00 2.44
2418 2931 6.394345 AAAAGAAGTCCTGGGTAGATCATT 57.606 37.500 0.00 0.00 0.00 2.57
2474 2990 5.134661 TGATACCCGTGGAACTTTCTTTTT 58.865 37.500 0.00 0.00 31.75 1.94
2503 3041 9.740710 AAAAATAGTATCCACTTAGAGTGCTTT 57.259 29.630 2.59 0.00 44.63 3.51
2504 3042 9.740710 AAAATAGTATCCACTTAGAGTGCTTTT 57.259 29.630 2.59 0.00 44.63 2.27
2505 3043 8.950208 AATAGTATCCACTTAGAGTGCTTTTC 57.050 34.615 2.59 0.00 44.63 2.29
2506 3044 6.360370 AGTATCCACTTAGAGTGCTTTTCA 57.640 37.500 2.59 0.00 44.63 2.69
2507 3045 6.951971 AGTATCCACTTAGAGTGCTTTTCAT 58.048 36.000 2.59 0.00 44.63 2.57
2508 3046 8.079211 AGTATCCACTTAGAGTGCTTTTCATA 57.921 34.615 2.59 0.00 44.63 2.15
2509 3047 8.709308 AGTATCCACTTAGAGTGCTTTTCATAT 58.291 33.333 2.59 0.00 44.63 1.78
2510 3048 8.983724 GTATCCACTTAGAGTGCTTTTCATATC 58.016 37.037 2.59 0.00 44.63 1.63
2511 3049 6.349300 TCCACTTAGAGTGCTTTTCATATCC 58.651 40.000 2.59 0.00 44.63 2.59
2512 3050 6.070251 TCCACTTAGAGTGCTTTTCATATCCA 60.070 38.462 2.59 0.00 44.63 3.41
2513 3051 6.599244 CCACTTAGAGTGCTTTTCATATCCAA 59.401 38.462 2.59 0.00 44.63 3.53
2514 3052 7.284034 CCACTTAGAGTGCTTTTCATATCCAAT 59.716 37.037 2.59 0.00 44.63 3.16
2515 3053 8.680903 CACTTAGAGTGCTTTTCATATCCAATT 58.319 33.333 0.00 0.00 39.62 2.32
2516 3054 9.905713 ACTTAGAGTGCTTTTCATATCCAATTA 57.094 29.630 0.00 0.00 0.00 1.40
2518 3056 9.679661 TTAGAGTGCTTTTCATATCCAATTACA 57.320 29.630 0.00 0.00 0.00 2.41
2519 3057 8.218338 AGAGTGCTTTTCATATCCAATTACAG 57.782 34.615 0.00 0.00 0.00 2.74
2520 3058 7.831193 AGAGTGCTTTTCATATCCAATTACAGT 59.169 33.333 0.00 0.00 0.00 3.55
2521 3059 7.765307 AGTGCTTTTCATATCCAATTACAGTG 58.235 34.615 0.00 0.00 0.00 3.66
2778 3346 4.810191 ACACTTAGGTGAGTCTTGGATC 57.190 45.455 12.54 0.00 45.61 3.36
3015 3584 4.852118 TCCCCTTAGAGGCATAATGCTTAT 59.148 41.667 0.00 0.00 44.28 1.73
3016 3585 6.029431 TCCCCTTAGAGGCATAATGCTTATA 58.971 40.000 0.00 0.00 44.28 0.98
3017 3586 6.503924 TCCCCTTAGAGGCATAATGCTTATAA 59.496 38.462 0.00 0.00 44.28 0.98
3018 3587 7.184570 TCCCCTTAGAGGCATAATGCTTATAAT 59.815 37.037 0.00 0.00 44.28 1.28
3019 3588 7.836183 CCCCTTAGAGGCATAATGCTTATAATT 59.164 37.037 0.00 0.00 44.28 1.40
3020 3589 9.905713 CCCTTAGAGGCATAATGCTTATAATTA 57.094 33.333 0.00 0.00 44.28 1.40
3073 3642 8.691661 TCTTGGAAAAGCTTGACTAAGTATTT 57.308 30.769 20.08 1.92 36.27 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.147767 AGCAATCAGGTCCCTTTAAACTTT 58.852 37.500 0.00 0.00 0.00 2.66
1 2 4.740902 AGCAATCAGGTCCCTTTAAACTT 58.259 39.130 0.00 0.00 0.00 2.66
2 3 4.388577 AGCAATCAGGTCCCTTTAAACT 57.611 40.909 0.00 0.00 0.00 2.66
24 25 4.707448 TGAGTGTCCCTGCAAACTTAAAAA 59.293 37.500 0.00 0.00 0.00 1.94
25 26 4.097286 GTGAGTGTCCCTGCAAACTTAAAA 59.903 41.667 0.00 0.00 0.00 1.52
26 27 3.630312 GTGAGTGTCCCTGCAAACTTAAA 59.370 43.478 0.00 0.00 0.00 1.52
27 28 3.211045 GTGAGTGTCCCTGCAAACTTAA 58.789 45.455 0.00 0.00 0.00 1.85
28 29 2.171659 TGTGAGTGTCCCTGCAAACTTA 59.828 45.455 0.00 0.00 0.00 2.24
29 30 1.064758 TGTGAGTGTCCCTGCAAACTT 60.065 47.619 0.00 0.00 0.00 2.66
30 31 0.546122 TGTGAGTGTCCCTGCAAACT 59.454 50.000 0.00 0.00 0.00 2.66
31 32 1.267806 CATGTGAGTGTCCCTGCAAAC 59.732 52.381 0.00 0.00 0.00 2.93
32 33 1.133823 ACATGTGAGTGTCCCTGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
33 34 0.473755 ACATGTGAGTGTCCCTGCAA 59.526 50.000 0.00 0.00 0.00 4.08
34 35 0.250424 CACATGTGAGTGTCCCTGCA 60.250 55.000 21.64 0.00 34.83 4.41
35 36 0.957395 CCACATGTGAGTGTCCCTGC 60.957 60.000 27.46 0.00 37.82 4.85
36 37 0.321919 CCCACATGTGAGTGTCCCTG 60.322 60.000 27.46 6.69 37.82 4.45
37 38 2.069776 CCCACATGTGAGTGTCCCT 58.930 57.895 27.46 0.00 37.82 4.20
38 39 1.675641 GCCCACATGTGAGTGTCCC 60.676 63.158 27.46 0.00 37.82 4.46
39 40 1.675641 GGCCCACATGTGAGTGTCC 60.676 63.158 27.46 14.98 37.82 4.02
40 41 1.675641 GGGCCCACATGTGAGTGTC 60.676 63.158 27.46 15.50 37.82 3.67
41 42 2.436109 GGGCCCACATGTGAGTGT 59.564 61.111 27.46 0.00 37.82 3.55
42 43 2.361610 GGGGCCCACATGTGAGTG 60.362 66.667 27.46 15.30 39.21 3.51
43 44 2.858476 TGGGGCCCACATGTGAGT 60.858 61.111 27.46 0.00 0.00 3.41
44 45 2.044650 CTGGGGCCCACATGTGAG 60.045 66.667 27.46 15.83 0.00 3.51
45 46 2.468868 AACTGGGGCCCACATGTGA 61.469 57.895 27.46 4.91 0.00 3.58
46 47 2.118076 AACTGGGGCCCACATGTG 59.882 61.111 24.76 19.31 0.00 3.21
47 48 2.118076 CAACTGGGGCCCACATGT 59.882 61.111 24.76 16.47 0.00 3.21
48 49 1.978617 GACAACTGGGGCCCACATG 60.979 63.158 24.76 24.61 0.00 3.21
49 50 1.803453 ATGACAACTGGGGCCCACAT 61.803 55.000 24.76 20.35 0.00 3.21
50 51 2.017668 AATGACAACTGGGGCCCACA 62.018 55.000 24.76 18.80 0.00 4.17
51 52 0.831711 AAATGACAACTGGGGCCCAC 60.832 55.000 24.76 12.73 0.00 4.61
52 53 0.780637 TAAATGACAACTGGGGCCCA 59.219 50.000 26.87 26.87 0.00 5.36
53 54 1.931635 TTAAATGACAACTGGGGCCC 58.068 50.000 18.17 18.17 0.00 5.80
54 55 2.168313 CCATTAAATGACAACTGGGGCC 59.832 50.000 0.00 0.00 0.00 5.80
55 56 2.831526 ACCATTAAATGACAACTGGGGC 59.168 45.455 0.00 0.00 0.00 5.80
56 57 6.597832 TTAACCATTAAATGACAACTGGGG 57.402 37.500 0.00 0.00 0.00 4.96
57 58 7.437748 TGTTTAACCATTAAATGACAACTGGG 58.562 34.615 0.00 0.00 37.44 4.45
58 59 8.879342 TTGTTTAACCATTAAATGACAACTGG 57.121 30.769 0.00 0.00 37.44 4.00
60 61 9.026074 CGTTTGTTTAACCATTAAATGACAACT 57.974 29.630 0.00 0.00 37.44 3.16
61 62 8.270111 CCGTTTGTTTAACCATTAAATGACAAC 58.730 33.333 0.00 0.00 37.44 3.32
62 63 7.980099 ACCGTTTGTTTAACCATTAAATGACAA 59.020 29.630 0.00 0.00 37.44 3.18
63 64 7.490000 ACCGTTTGTTTAACCATTAAATGACA 58.510 30.769 0.00 0.00 37.44 3.58
64 65 7.648510 TGACCGTTTGTTTAACCATTAAATGAC 59.351 33.333 0.00 0.00 37.44 3.06
65 66 7.713750 TGACCGTTTGTTTAACCATTAAATGA 58.286 30.769 0.00 0.00 37.44 2.57
66 67 7.932120 TGACCGTTTGTTTAACCATTAAATG 57.068 32.000 0.00 0.00 37.44 2.32
67 68 8.943909 TTTGACCGTTTGTTTAACCATTAAAT 57.056 26.923 0.00 0.00 37.44 1.40
68 69 8.654215 GTTTTGACCGTTTGTTTAACCATTAAA 58.346 29.630 0.00 0.00 32.92 1.52
69 70 7.816031 TGTTTTGACCGTTTGTTTAACCATTAA 59.184 29.630 0.00 0.00 32.92 1.40
70 71 7.318141 TGTTTTGACCGTTTGTTTAACCATTA 58.682 30.769 0.00 0.00 32.92 1.90
71 72 6.164176 TGTTTTGACCGTTTGTTTAACCATT 58.836 32.000 0.00 0.00 32.92 3.16
72 73 5.721232 TGTTTTGACCGTTTGTTTAACCAT 58.279 33.333 0.00 0.00 32.92 3.55
73 74 5.130292 TGTTTTGACCGTTTGTTTAACCA 57.870 34.783 0.00 0.00 32.92 3.67
74 75 6.310711 TGATTGTTTTGACCGTTTGTTTAACC 59.689 34.615 0.00 0.00 32.92 2.85
75 76 7.062488 ACTGATTGTTTTGACCGTTTGTTTAAC 59.938 33.333 0.00 0.00 0.00 2.01
76 77 7.091443 ACTGATTGTTTTGACCGTTTGTTTAA 58.909 30.769 0.00 0.00 0.00 1.52
77 78 6.622549 ACTGATTGTTTTGACCGTTTGTTTA 58.377 32.000 0.00 0.00 0.00 2.01
78 79 5.474825 ACTGATTGTTTTGACCGTTTGTTT 58.525 33.333 0.00 0.00 0.00 2.83
79 80 5.066968 ACTGATTGTTTTGACCGTTTGTT 57.933 34.783 0.00 0.00 0.00 2.83
80 81 4.712122 ACTGATTGTTTTGACCGTTTGT 57.288 36.364 0.00 0.00 0.00 2.83
92 93 6.738453 GCCCACATGTAAGAAAACTGATTGTT 60.738 38.462 0.00 0.00 41.29 2.83
93 94 5.278957 GCCCACATGTAAGAAAACTGATTGT 60.279 40.000 0.00 0.00 0.00 2.71
94 95 5.163513 GCCCACATGTAAGAAAACTGATTG 58.836 41.667 0.00 0.00 0.00 2.67
95 96 4.220602 GGCCCACATGTAAGAAAACTGATT 59.779 41.667 0.00 0.00 0.00 2.57
96 97 3.763897 GGCCCACATGTAAGAAAACTGAT 59.236 43.478 0.00 0.00 0.00 2.90
97 98 3.153919 GGCCCACATGTAAGAAAACTGA 58.846 45.455 0.00 0.00 0.00 3.41
98 99 2.231235 GGGCCCACATGTAAGAAAACTG 59.769 50.000 19.95 0.00 0.00 3.16
99 100 2.525368 GGGCCCACATGTAAGAAAACT 58.475 47.619 19.95 0.00 0.00 2.66
100 101 1.548719 GGGGCCCACATGTAAGAAAAC 59.451 52.381 26.86 0.00 0.00 2.43
101 102 1.148027 TGGGGCCCACATGTAAGAAAA 59.852 47.619 24.76 0.00 0.00 2.29
102 103 0.780637 TGGGGCCCACATGTAAGAAA 59.219 50.000 24.76 0.00 0.00 2.52
103 104 0.780637 TTGGGGCCCACATGTAAGAA 59.219 50.000 28.84 3.67 30.78 2.52
104 105 0.039035 GTTGGGGCCCACATGTAAGA 59.961 55.000 28.84 4.60 30.78 2.10
105 106 0.039618 AGTTGGGGCCCACATGTAAG 59.960 55.000 28.84 0.00 30.78 2.34
106 107 1.373536 TAGTTGGGGCCCACATGTAA 58.626 50.000 28.84 6.50 30.78 2.41
107 108 1.493022 GATAGTTGGGGCCCACATGTA 59.507 52.381 28.84 14.62 30.78 2.29
108 109 0.258774 GATAGTTGGGGCCCACATGT 59.741 55.000 28.84 15.44 30.78 3.21
109 110 0.258484 TGATAGTTGGGGCCCACATG 59.742 55.000 28.84 0.00 30.78 3.21
110 111 1.234806 ATGATAGTTGGGGCCCACAT 58.765 50.000 28.84 22.02 30.78 3.21
111 112 1.900254 TATGATAGTTGGGGCCCACA 58.100 50.000 28.84 20.59 30.78 4.17
112 113 3.181434 TGATTATGATAGTTGGGGCCCAC 60.181 47.826 28.84 20.44 30.78 4.61
113 114 3.059853 TGATTATGATAGTTGGGGCCCA 58.940 45.455 24.76 24.76 0.00 5.36
114 115 3.421844 GTGATTATGATAGTTGGGGCCC 58.578 50.000 18.17 18.17 0.00 5.80
115 116 3.074412 CGTGATTATGATAGTTGGGGCC 58.926 50.000 0.00 0.00 0.00 5.80
116 117 4.002906 TCGTGATTATGATAGTTGGGGC 57.997 45.455 0.00 0.00 0.00 5.80
117 118 5.793817 TGATCGTGATTATGATAGTTGGGG 58.206 41.667 0.00 0.00 32.73 4.96
118 119 7.912056 ATTGATCGTGATTATGATAGTTGGG 57.088 36.000 0.00 0.00 32.73 4.12
119 120 8.777413 ACAATTGATCGTGATTATGATAGTTGG 58.223 33.333 13.59 0.52 32.73 3.77
125 126 8.839343 TGCTTTACAATTGATCGTGATTATGAT 58.161 29.630 13.59 0.00 35.26 2.45
126 127 8.207521 TGCTTTACAATTGATCGTGATTATGA 57.792 30.769 13.59 0.00 0.00 2.15
127 128 9.454585 AATGCTTTACAATTGATCGTGATTATG 57.545 29.630 13.59 0.00 0.00 1.90
128 129 9.454585 CAATGCTTTACAATTGATCGTGATTAT 57.545 29.630 13.59 0.00 0.00 1.28
129 130 7.914871 CCAATGCTTTACAATTGATCGTGATTA 59.085 33.333 13.59 0.00 0.00 1.75
130 131 6.753279 CCAATGCTTTACAATTGATCGTGATT 59.247 34.615 13.59 1.02 0.00 2.57
131 132 6.095300 TCCAATGCTTTACAATTGATCGTGAT 59.905 34.615 13.59 0.00 0.00 3.06
132 133 5.414144 TCCAATGCTTTACAATTGATCGTGA 59.586 36.000 13.59 0.00 0.00 4.35
133 134 5.512788 GTCCAATGCTTTACAATTGATCGTG 59.487 40.000 13.59 0.00 0.00 4.35
134 135 5.182950 TGTCCAATGCTTTACAATTGATCGT 59.817 36.000 13.59 0.00 0.00 3.73
135 136 5.639757 TGTCCAATGCTTTACAATTGATCG 58.360 37.500 13.59 0.00 0.00 3.69
136 137 8.483307 AATTGTCCAATGCTTTACAATTGATC 57.517 30.769 18.30 0.00 45.79 2.92
137 138 9.590451 CTAATTGTCCAATGCTTTACAATTGAT 57.410 29.630 23.41 10.28 46.51 2.57
138 139 8.801299 TCTAATTGTCCAATGCTTTACAATTGA 58.199 29.630 23.41 18.28 46.51 2.57
139 140 8.984891 TCTAATTGTCCAATGCTTTACAATTG 57.015 30.769 23.41 17.11 46.51 2.32
141 142 8.353423 ACTCTAATTGTCCAATGCTTTACAAT 57.647 30.769 7.36 7.36 42.71 2.71
142 143 7.759489 ACTCTAATTGTCCAATGCTTTACAA 57.241 32.000 3.87 3.87 36.37 2.41
143 144 7.759489 AACTCTAATTGTCCAATGCTTTACA 57.241 32.000 0.00 0.00 0.00 2.41
144 145 9.476202 AAAAACTCTAATTGTCCAATGCTTTAC 57.524 29.630 0.00 0.00 0.00 2.01
167 168 0.747852 GGGGTCGGCTGTTTCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
168 169 0.106419 AGGGGTCGGCTGTTTCAAAA 60.106 50.000 0.00 0.00 0.00 2.44
169 170 0.536460 GAGGGGTCGGCTGTTTCAAA 60.536 55.000 0.00 0.00 0.00 2.69
170 171 1.072505 GAGGGGTCGGCTGTTTCAA 59.927 57.895 0.00 0.00 0.00 2.69
171 172 1.415672 AAGAGGGGTCGGCTGTTTCA 61.416 55.000 0.00 0.00 0.00 2.69
172 173 0.250770 AAAGAGGGGTCGGCTGTTTC 60.251 55.000 0.00 0.00 0.00 2.78
173 174 0.185175 AAAAGAGGGGTCGGCTGTTT 59.815 50.000 0.00 0.00 0.00 2.83
174 175 0.537371 CAAAAGAGGGGTCGGCTGTT 60.537 55.000 0.00 0.00 0.00 3.16
175 176 1.073199 CAAAAGAGGGGTCGGCTGT 59.927 57.895 0.00 0.00 0.00 4.40
176 177 0.035056 ATCAAAAGAGGGGTCGGCTG 60.035 55.000 0.00 0.00 0.00 4.85
177 178 1.486726 CTATCAAAAGAGGGGTCGGCT 59.513 52.381 0.00 0.00 0.00 5.52
178 179 1.209747 ACTATCAAAAGAGGGGTCGGC 59.790 52.381 0.00 0.00 0.00 5.54
179 180 3.629142 AACTATCAAAAGAGGGGTCGG 57.371 47.619 0.00 0.00 0.00 4.79
180 181 5.914033 TGATAACTATCAAAAGAGGGGTCG 58.086 41.667 0.00 0.00 39.58 4.79
181 182 5.760743 GCTGATAACTATCAAAAGAGGGGTC 59.239 44.000 1.30 0.00 41.72 4.46
182 183 5.685075 CGCTGATAACTATCAAAAGAGGGGT 60.685 44.000 1.30 0.00 41.72 4.95
183 184 4.752101 CGCTGATAACTATCAAAAGAGGGG 59.248 45.833 1.30 0.00 41.72 4.79
184 185 5.601662 TCGCTGATAACTATCAAAAGAGGG 58.398 41.667 1.30 0.00 41.72 4.30
185 186 6.507900 TCTCGCTGATAACTATCAAAAGAGG 58.492 40.000 16.92 3.25 41.72 3.69
186 187 7.993821 TTCTCGCTGATAACTATCAAAAGAG 57.006 36.000 13.82 13.82 41.72 2.85
187 188 8.771920 TTTTCTCGCTGATAACTATCAAAAGA 57.228 30.769 1.30 2.41 41.72 2.52
188 189 9.994432 ATTTTTCTCGCTGATAACTATCAAAAG 57.006 29.630 1.30 0.43 41.72 2.27
193 194 9.944941 CGAATATTTTTCTCGCTGATAACTATC 57.055 33.333 0.00 0.00 0.00 2.08
194 195 9.692749 TCGAATATTTTTCTCGCTGATAACTAT 57.307 29.630 0.00 0.00 32.66 2.12
195 196 9.692749 ATCGAATATTTTTCTCGCTGATAACTA 57.307 29.630 0.00 0.00 32.66 2.24
196 197 8.594881 ATCGAATATTTTTCTCGCTGATAACT 57.405 30.769 0.00 0.00 32.66 2.24
197 198 9.944941 CTATCGAATATTTTTCTCGCTGATAAC 57.055 33.333 0.00 0.00 32.66 1.89
198 199 9.692749 ACTATCGAATATTTTTCTCGCTGATAA 57.307 29.630 0.00 0.00 32.66 1.75
199 200 9.692749 AACTATCGAATATTTTTCTCGCTGATA 57.307 29.630 0.00 0.00 32.66 2.15
200 201 8.594881 AACTATCGAATATTTTTCTCGCTGAT 57.405 30.769 0.00 0.00 32.66 2.90
201 202 8.420374 AAACTATCGAATATTTTTCTCGCTGA 57.580 30.769 0.00 0.00 32.66 4.26
202 203 9.490663 AAAAACTATCGAATATTTTTCTCGCTG 57.509 29.630 9.54 0.00 30.39 5.18
225 226 4.456662 TTACAGGCTAGGGTTCCAAAAA 57.543 40.909 0.00 0.00 0.00 1.94
226 227 4.141111 ACTTTACAGGCTAGGGTTCCAAAA 60.141 41.667 0.00 0.00 0.00 2.44
227 228 3.396611 ACTTTACAGGCTAGGGTTCCAAA 59.603 43.478 0.00 0.00 0.00 3.28
228 229 2.983898 ACTTTACAGGCTAGGGTTCCAA 59.016 45.455 0.00 0.00 0.00 3.53
229 230 2.627933 ACTTTACAGGCTAGGGTTCCA 58.372 47.619 0.00 0.00 0.00 3.53
230 231 3.773667 ACTACTTTACAGGCTAGGGTTCC 59.226 47.826 0.00 0.00 0.00 3.62
231 232 5.655974 ACTACTACTTTACAGGCTAGGGTTC 59.344 44.000 0.00 0.00 0.00 3.62
232 233 5.587861 ACTACTACTTTACAGGCTAGGGTT 58.412 41.667 0.00 0.00 0.00 4.11
233 234 5.204131 ACTACTACTTTACAGGCTAGGGT 57.796 43.478 0.00 0.00 0.00 4.34
234 235 6.541934 AAACTACTACTTTACAGGCTAGGG 57.458 41.667 0.00 0.00 0.00 3.53
235 236 9.530633 CATAAAACTACTACTTTACAGGCTAGG 57.469 37.037 0.00 0.00 0.00 3.02
236 237 9.032420 GCATAAAACTACTACTTTACAGGCTAG 57.968 37.037 0.00 0.00 0.00 3.42
237 238 8.755977 AGCATAAAACTACTACTTTACAGGCTA 58.244 33.333 0.00 0.00 0.00 3.93
238 239 7.621796 AGCATAAAACTACTACTTTACAGGCT 58.378 34.615 0.00 0.00 0.00 4.58
239 240 7.764901 AGAGCATAAAACTACTACTTTACAGGC 59.235 37.037 0.00 0.00 0.00 4.85
240 241 9.654663 AAGAGCATAAAACTACTACTTTACAGG 57.345 33.333 0.00 0.00 0.00 4.00
247 248 9.857957 GTGAGTAAAGAGCATAAAACTACTACT 57.142 33.333 0.00 0.00 0.00 2.57
248 249 9.635520 TGTGAGTAAAGAGCATAAAACTACTAC 57.364 33.333 0.00 0.00 0.00 2.73
250 251 9.372369 GATGTGAGTAAAGAGCATAAAACTACT 57.628 33.333 0.00 0.00 0.00 2.57
251 252 9.151471 TGATGTGAGTAAAGAGCATAAAACTAC 57.849 33.333 0.00 0.00 0.00 2.73
252 253 9.719355 TTGATGTGAGTAAAGAGCATAAAACTA 57.281 29.630 0.00 0.00 0.00 2.24
253 254 8.621532 TTGATGTGAGTAAAGAGCATAAAACT 57.378 30.769 0.00 0.00 0.00 2.66
254 255 7.483059 GCTTGATGTGAGTAAAGAGCATAAAAC 59.517 37.037 0.00 0.00 0.00 2.43
255 256 7.362056 GGCTTGATGTGAGTAAAGAGCATAAAA 60.362 37.037 0.00 0.00 0.00 1.52
256 257 6.094048 GGCTTGATGTGAGTAAAGAGCATAAA 59.906 38.462 0.00 0.00 0.00 1.40
257 258 5.586243 GGCTTGATGTGAGTAAAGAGCATAA 59.414 40.000 0.00 0.00 0.00 1.90
258 259 5.118990 GGCTTGATGTGAGTAAAGAGCATA 58.881 41.667 0.00 0.00 0.00 3.14
259 260 3.944015 GGCTTGATGTGAGTAAAGAGCAT 59.056 43.478 0.00 0.00 0.00 3.79
260 261 3.338249 GGCTTGATGTGAGTAAAGAGCA 58.662 45.455 0.00 0.00 0.00 4.26
261 262 2.680339 GGGCTTGATGTGAGTAAAGAGC 59.320 50.000 0.00 0.00 0.00 4.09
262 263 3.942829 TGGGCTTGATGTGAGTAAAGAG 58.057 45.455 0.00 0.00 0.00 2.85
263 264 4.263462 ACATGGGCTTGATGTGAGTAAAGA 60.263 41.667 0.00 0.00 32.68 2.52
264 265 4.012374 ACATGGGCTTGATGTGAGTAAAG 58.988 43.478 0.00 0.00 32.68 1.85
265 266 4.032960 ACATGGGCTTGATGTGAGTAAA 57.967 40.909 0.00 0.00 32.68 2.01
266 267 3.719268 ACATGGGCTTGATGTGAGTAA 57.281 42.857 0.00 0.00 32.68 2.24
267 268 3.346315 CAACATGGGCTTGATGTGAGTA 58.654 45.455 0.00 0.00 34.22 2.59
268 269 2.165167 CAACATGGGCTTGATGTGAGT 58.835 47.619 0.00 0.00 34.22 3.41
269 270 1.135199 GCAACATGGGCTTGATGTGAG 60.135 52.381 0.00 0.00 34.22 3.51
270 271 0.889994 GCAACATGGGCTTGATGTGA 59.110 50.000 0.00 0.00 34.22 3.58
271 272 0.604073 TGCAACATGGGCTTGATGTG 59.396 50.000 12.08 0.00 34.22 3.21
272 273 1.340088 TTGCAACATGGGCTTGATGT 58.660 45.000 12.08 0.00 35.49 3.06
273 274 2.459060 TTTGCAACATGGGCTTGATG 57.541 45.000 0.00 0.00 0.00 3.07
274 275 2.769893 GTTTTGCAACATGGGCTTGAT 58.230 42.857 0.00 0.00 32.54 2.57
275 276 1.537776 CGTTTTGCAACATGGGCTTGA 60.538 47.619 0.00 0.00 32.54 3.02
276 277 0.860533 CGTTTTGCAACATGGGCTTG 59.139 50.000 0.00 2.14 32.54 4.01
277 278 0.249826 CCGTTTTGCAACATGGGCTT 60.250 50.000 14.96 0.00 32.54 4.35
278 279 1.367102 CCGTTTTGCAACATGGGCT 59.633 52.632 14.96 0.00 32.54 5.19
279 280 1.667510 CCCGTTTTGCAACATGGGC 60.668 57.895 26.09 0.49 29.61 5.36
280 281 1.667510 GCCCGTTTTGCAACATGGG 60.668 57.895 30.86 30.86 36.88 4.00
281 282 2.021039 CGCCCGTTTTGCAACATGG 61.021 57.895 15.69 15.69 32.54 3.66
282 283 2.021039 CCGCCCGTTTTGCAACATG 61.021 57.895 0.00 0.00 32.54 3.21
283 284 1.173444 TACCGCCCGTTTTGCAACAT 61.173 50.000 0.00 0.00 32.54 2.71
284 285 1.787057 CTACCGCCCGTTTTGCAACA 61.787 55.000 0.00 0.00 32.54 3.33
285 286 1.081708 CTACCGCCCGTTTTGCAAC 60.082 57.895 0.00 0.00 0.00 4.17
286 287 2.262303 CCTACCGCCCGTTTTGCAA 61.262 57.895 0.00 0.00 0.00 4.08
287 288 2.670251 CCTACCGCCCGTTTTGCA 60.670 61.111 0.00 0.00 0.00 4.08
288 289 1.798234 AAACCTACCGCCCGTTTTGC 61.798 55.000 0.00 0.00 0.00 3.68
289 290 0.039888 CAAACCTACCGCCCGTTTTG 60.040 55.000 0.00 0.00 0.00 2.44
290 291 1.798234 GCAAACCTACCGCCCGTTTT 61.798 55.000 0.00 0.00 0.00 2.43
291 292 2.263021 GCAAACCTACCGCCCGTTT 61.263 57.895 0.00 0.00 0.00 3.60
292 293 2.670592 GCAAACCTACCGCCCGTT 60.671 61.111 0.00 0.00 0.00 4.44
293 294 4.710167 GGCAAACCTACCGCCCGT 62.710 66.667 0.00 0.00 40.07 5.28
316 317 3.745332 TTTTGATCATACAGCGTGCAG 57.255 42.857 0.00 0.00 0.00 4.41
317 318 3.688673 TGATTTTGATCATACAGCGTGCA 59.311 39.130 0.00 0.00 0.00 4.57
318 319 4.034394 TCTGATTTTGATCATACAGCGTGC 59.966 41.667 0.00 0.00 0.00 5.34
319 320 5.496387 GTCTGATTTTGATCATACAGCGTG 58.504 41.667 0.00 0.00 30.77 5.34
320 321 4.268644 CGTCTGATTTTGATCATACAGCGT 59.731 41.667 0.00 0.00 30.77 5.07
321 322 4.504097 TCGTCTGATTTTGATCATACAGCG 59.496 41.667 0.00 11.17 30.77 5.18
322 323 5.557893 GCTCGTCTGATTTTGATCATACAGC 60.558 44.000 0.00 8.49 31.83 4.40
323 324 5.050499 GGCTCGTCTGATTTTGATCATACAG 60.050 44.000 0.00 4.60 30.77 2.74
324 325 4.811024 GGCTCGTCTGATTTTGATCATACA 59.189 41.667 0.00 0.00 30.77 2.29
325 326 4.811024 TGGCTCGTCTGATTTTGATCATAC 59.189 41.667 0.00 0.00 0.00 2.39
326 327 5.022282 TGGCTCGTCTGATTTTGATCATA 57.978 39.130 0.00 0.00 0.00 2.15
327 328 3.875727 CTGGCTCGTCTGATTTTGATCAT 59.124 43.478 0.00 0.00 0.00 2.45
328 329 3.264947 CTGGCTCGTCTGATTTTGATCA 58.735 45.455 0.00 0.00 0.00 2.92
329 330 3.063180 CACTGGCTCGTCTGATTTTGATC 59.937 47.826 0.00 0.00 0.00 2.92
330 331 3.005554 CACTGGCTCGTCTGATTTTGAT 58.994 45.455 0.00 0.00 0.00 2.57
331 332 2.416747 CACTGGCTCGTCTGATTTTGA 58.583 47.619 0.00 0.00 0.00 2.69
332 333 1.135859 GCACTGGCTCGTCTGATTTTG 60.136 52.381 0.00 0.00 36.96 2.44
333 334 1.160137 GCACTGGCTCGTCTGATTTT 58.840 50.000 0.00 0.00 36.96 1.82
334 335 1.016130 CGCACTGGCTCGTCTGATTT 61.016 55.000 0.00 0.00 38.10 2.17
335 336 1.446792 CGCACTGGCTCGTCTGATT 60.447 57.895 0.00 0.00 38.10 2.57
336 337 2.182791 CGCACTGGCTCGTCTGAT 59.817 61.111 0.00 0.00 38.10 2.90
337 338 4.056125 CCGCACTGGCTCGTCTGA 62.056 66.667 0.00 0.00 38.10 3.27
338 339 3.978723 CTCCGCACTGGCTCGTCTG 62.979 68.421 0.00 0.00 38.10 3.51
339 340 3.753434 CTCCGCACTGGCTCGTCT 61.753 66.667 0.00 0.00 38.10 4.18
340 341 3.749064 TCTCCGCACTGGCTCGTC 61.749 66.667 0.00 0.00 38.10 4.20
341 342 4.057428 GTCTCCGCACTGGCTCGT 62.057 66.667 0.00 0.00 38.10 4.18
343 344 4.803426 CCGTCTCCGCACTGGCTC 62.803 72.222 0.00 0.00 38.10 4.70
351 352 4.760047 ATGTGTGGCCGTCTCCGC 62.760 66.667 0.00 0.00 37.15 5.54
352 353 2.509336 GATGTGTGGCCGTCTCCG 60.509 66.667 0.00 0.00 0.00 4.63
353 354 2.509336 CGATGTGTGGCCGTCTCC 60.509 66.667 0.00 0.00 0.00 3.71
354 355 3.188786 GCGATGTGTGGCCGTCTC 61.189 66.667 0.00 0.00 0.00 3.36
361 362 1.752501 GATTCGGACGCGATGTGTGG 61.753 60.000 15.93 0.00 0.00 4.17
362 363 1.075979 TGATTCGGACGCGATGTGTG 61.076 55.000 15.93 0.00 0.00 3.82
363 364 0.179111 ATGATTCGGACGCGATGTGT 60.179 50.000 15.93 0.00 0.00 3.72
364 365 0.230515 CATGATTCGGACGCGATGTG 59.769 55.000 15.93 0.00 0.00 3.21
365 366 0.102300 TCATGATTCGGACGCGATGT 59.898 50.000 15.93 0.00 0.00 3.06
366 367 0.780596 CTCATGATTCGGACGCGATG 59.219 55.000 15.93 3.00 0.00 3.84
367 368 0.385751 ACTCATGATTCGGACGCGAT 59.614 50.000 15.93 0.00 0.00 4.58
368 369 0.172578 AACTCATGATTCGGACGCGA 59.827 50.000 15.93 0.00 0.00 5.87
369 370 0.572590 GAACTCATGATTCGGACGCG 59.427 55.000 3.53 3.53 0.00 6.01
370 371 1.640428 TGAACTCATGATTCGGACGC 58.360 50.000 0.00 0.00 0.00 5.19
371 372 2.604914 CCTTGAACTCATGATTCGGACG 59.395 50.000 0.00 0.00 0.00 4.79
372 373 2.939103 CCCTTGAACTCATGATTCGGAC 59.061 50.000 0.00 0.00 0.00 4.79
373 374 2.092968 CCCCTTGAACTCATGATTCGGA 60.093 50.000 0.00 0.00 0.00 4.55
374 375 2.092968 TCCCCTTGAACTCATGATTCGG 60.093 50.000 0.00 1.29 0.00 4.30
375 376 3.201290 CTCCCCTTGAACTCATGATTCG 58.799 50.000 0.00 0.00 0.00 3.34
376 377 2.948315 GCTCCCCTTGAACTCATGATTC 59.052 50.000 0.00 3.56 0.00 2.52
377 378 2.579860 AGCTCCCCTTGAACTCATGATT 59.420 45.455 0.00 0.00 0.00 2.57
378 379 2.203584 AGCTCCCCTTGAACTCATGAT 58.796 47.619 0.00 0.00 0.00 2.45
379 380 1.661463 AGCTCCCCTTGAACTCATGA 58.339 50.000 0.00 0.00 0.00 3.07
380 381 2.026449 AGAAGCTCCCCTTGAACTCATG 60.026 50.000 0.00 0.00 32.78 3.07
381 382 2.238395 GAGAAGCTCCCCTTGAACTCAT 59.762 50.000 0.00 0.00 32.78 2.90
382 383 1.625818 GAGAAGCTCCCCTTGAACTCA 59.374 52.381 0.00 0.00 32.78 3.41
383 384 1.065782 GGAGAAGCTCCCCTTGAACTC 60.066 57.143 1.97 0.00 44.36 3.01
384 385 0.988063 GGAGAAGCTCCCCTTGAACT 59.012 55.000 1.97 0.00 44.36 3.01
385 386 3.560534 GGAGAAGCTCCCCTTGAAC 57.439 57.895 1.97 0.00 44.36 3.18
400 401 3.545703 AGGCGTGAATTATCTTTGGGAG 58.454 45.455 0.00 0.00 0.00 4.30
408 409 5.866633 CCTCTTGATCTAGGCGTGAATTATC 59.133 44.000 4.29 0.00 0.00 1.75
416 417 1.883275 CGATCCTCTTGATCTAGGCGT 59.117 52.381 4.29 0.00 46.52 5.68
417 418 1.402194 GCGATCCTCTTGATCTAGGCG 60.402 57.143 4.29 5.08 46.52 5.52
422 423 3.529533 CTTTGTGCGATCCTCTTGATCT 58.470 45.455 0.00 0.00 46.52 2.75
425 426 1.270785 TGCTTTGTGCGATCCTCTTGA 60.271 47.619 0.00 0.00 46.63 3.02
427 428 1.896220 TTGCTTTGTGCGATCCTCTT 58.104 45.000 0.00 0.00 46.63 2.85
434 435 5.565592 ATCAGAATAATTGCTTTGTGCGA 57.434 34.783 0.00 0.00 46.63 5.10
452 453 5.179742 GGATATGCTCAGCTTCAGAAATCAG 59.820 44.000 0.00 0.00 0.00 2.90
453 454 5.061853 GGATATGCTCAGCTTCAGAAATCA 58.938 41.667 0.00 0.00 0.00 2.57
484 485 1.180456 TGCCACCAACTGCAGAATGG 61.180 55.000 29.43 29.43 40.16 3.16
499 500 8.632906 ATTATTTTCATTTCATTTGGTTGCCA 57.367 26.923 0.00 0.00 0.00 4.92
511 512 9.875675 CGGATCTGAAGAGATTATTTTCATTTC 57.124 33.333 0.00 0.00 39.19 2.17
519 529 7.724506 TGTAGGTACGGATCTGAAGAGATTATT 59.275 37.037 9.00 0.00 39.19 1.40
529 539 4.166246 AGTCATGTAGGTACGGATCTGA 57.834 45.455 9.00 0.00 0.00 3.27
588 598 4.261741 GCACTGGCATTATATTGGTTGAGG 60.262 45.833 0.00 0.00 40.72 3.86
615 625 0.249657 GGCCCTAGAAGATGACAGCG 60.250 60.000 0.00 0.00 0.00 5.18
616 626 0.107643 GGGCCCTAGAAGATGACAGC 59.892 60.000 17.04 0.00 0.00 4.40
628 638 0.466922 GACTAGCACGTAGGGCCCTA 60.467 60.000 28.66 28.66 32.29 3.53
646 656 0.882927 CAAAAAGGTCGGCGGAGTGA 60.883 55.000 7.21 0.00 0.00 3.41
680 690 8.798859 AATCTTTGAAAAATCTAGCAGCTAGA 57.201 30.769 30.31 30.31 45.52 2.43
705 718 5.300286 GGTTAGCTAGGGTTTCGAGTGTATA 59.700 44.000 0.00 0.00 0.00 1.47
706 719 4.099113 GGTTAGCTAGGGTTTCGAGTGTAT 59.901 45.833 0.00 0.00 0.00 2.29
707 720 3.445096 GGTTAGCTAGGGTTTCGAGTGTA 59.555 47.826 0.00 0.00 0.00 2.90
759 773 1.461091 CCATGGCTCCCATCATGCAC 61.461 60.000 0.00 0.00 43.15 4.57
802 826 5.286558 CCTAGAACACGAAAGAGAAACGATC 59.713 44.000 0.00 0.00 0.00 3.69
803 827 5.162075 CCTAGAACACGAAAGAGAAACGAT 58.838 41.667 0.00 0.00 0.00 3.73
804 828 4.543692 CCTAGAACACGAAAGAGAAACGA 58.456 43.478 0.00 0.00 0.00 3.85
805 829 3.673809 CCCTAGAACACGAAAGAGAAACG 59.326 47.826 0.00 0.00 0.00 3.60
806 830 4.629092 ACCCTAGAACACGAAAGAGAAAC 58.371 43.478 0.00 0.00 0.00 2.78
807 831 4.262335 GGACCCTAGAACACGAAAGAGAAA 60.262 45.833 0.00 0.00 0.00 2.52
808 832 3.257624 GGACCCTAGAACACGAAAGAGAA 59.742 47.826 0.00 0.00 0.00 2.87
809 833 2.824341 GGACCCTAGAACACGAAAGAGA 59.176 50.000 0.00 0.00 0.00 3.10
827 851 0.030369 CGACAGGGTAGCGTATGGAC 59.970 60.000 0.00 0.00 0.00 4.02
830 854 2.414293 GCTATCGACAGGGTAGCGTATG 60.414 54.545 0.00 0.00 32.48 2.39
832 856 1.233019 GCTATCGACAGGGTAGCGTA 58.767 55.000 0.00 0.00 32.48 4.42
848 872 1.504647 CGACCCTCGCACTATCGCTA 61.505 60.000 0.00 0.00 31.14 4.26
906 930 9.784531 GGCCTCATATATAATATAGCAATGTGT 57.215 33.333 0.00 0.00 0.00 3.72
961 1006 1.000955 CTCTCTGCTGTACGGGTTGTT 59.999 52.381 3.34 0.00 0.00 2.83
986 1037 0.322366 TGCCATTGCCGACAATCTCA 60.322 50.000 0.00 0.00 44.83 3.27
1402 1454 1.488705 TTCCTGAACCAGTCCGCCAT 61.489 55.000 0.00 0.00 0.00 4.40
1785 1840 1.283793 CTTGAGCAACACGGCTTGG 59.716 57.895 0.00 0.00 45.99 3.61
1844 1910 7.946207 TGCTTTAACATTTCACTTGGAATACA 58.054 30.769 0.00 0.00 34.91 2.29
1845 1911 8.810652 TTGCTTTAACATTTCACTTGGAATAC 57.189 30.769 0.00 0.00 34.91 1.89
1940 2445 5.540719 AGGTTAATCAAGCCCTACTAGCTAG 59.459 44.000 19.44 19.44 40.49 3.42
1941 2446 5.464984 AGGTTAATCAAGCCCTACTAGCTA 58.535 41.667 0.00 0.00 40.49 3.32
1942 2447 4.299485 AGGTTAATCAAGCCCTACTAGCT 58.701 43.478 0.00 0.00 44.19 3.32
1943 2448 4.691326 AGGTTAATCAAGCCCTACTAGC 57.309 45.455 0.00 0.00 32.36 3.42
1949 2454 8.658840 TTGTAATTTAAGGTTAATCAAGCCCT 57.341 30.769 0.00 0.00 32.36 5.19
1950 2455 8.528643 ACTTGTAATTTAAGGTTAATCAAGCCC 58.471 33.333 0.00 0.00 34.90 5.19
2076 2585 1.625818 ACGATGACTTTTCCTCCTGCT 59.374 47.619 0.00 0.00 0.00 4.24
2172 2681 2.105128 CGGCCTCTCGTCATCACC 59.895 66.667 0.00 0.00 0.00 4.02
2301 2810 2.154462 CACCTTACTTTGGGAGCACAG 58.846 52.381 0.00 0.00 0.00 3.66
2318 2827 5.125417 ACAATCCACAACATATGTAAGCACC 59.875 40.000 9.21 0.00 41.46 5.01
2392 2905 5.309543 TGATCTACCCAGGACTTCTTTTTGA 59.690 40.000 0.00 0.00 0.00 2.69
2397 2910 5.032846 TGAATGATCTACCCAGGACTTCTT 58.967 41.667 0.00 0.00 0.00 2.52
2418 2931 4.960938 AGACATAATCGCCTTGCTATTGA 58.039 39.130 0.00 0.00 0.00 2.57
2515 3053 9.471084 CACGGTACATATATGAAAATCACTGTA 57.529 33.333 19.63 0.00 0.00 2.74
2516 3054 7.985184 ACACGGTACATATATGAAAATCACTGT 59.015 33.333 19.63 12.96 0.00 3.55
2517 3055 8.365399 ACACGGTACATATATGAAAATCACTG 57.635 34.615 19.63 12.45 0.00 3.66
2518 3056 9.472361 GTACACGGTACATATATGAAAATCACT 57.528 33.333 19.63 0.00 0.00 3.41
2519 3057 9.251792 TGTACACGGTACATATATGAAAATCAC 57.748 33.333 19.63 7.65 0.00 3.06
2520 3058 9.819267 TTGTACACGGTACATATATGAAAATCA 57.181 29.630 19.63 4.26 0.00 2.57
2668 3236 2.727123 TTCCAAGCCACAAAGAGACA 57.273 45.000 0.00 0.00 0.00 3.41
2778 3346 5.843019 AGGGTCCATATGTATTGGTTAGG 57.157 43.478 1.24 0.00 35.64 2.69
2980 3549 6.555360 TGCCTCTAAGGGGAATTTTAACAAAA 59.445 34.615 0.00 0.00 35.37 2.44
2981 3550 6.078664 TGCCTCTAAGGGGAATTTTAACAAA 58.921 36.000 0.00 0.00 35.37 2.83
3015 3584 9.481340 CACTCTGCATATTGCTCTAAGTAATTA 57.519 33.333 0.75 0.00 45.31 1.40
3016 3585 8.206867 TCACTCTGCATATTGCTCTAAGTAATT 58.793 33.333 0.75 0.00 45.31 1.40
3017 3586 7.730084 TCACTCTGCATATTGCTCTAAGTAAT 58.270 34.615 0.75 0.00 45.31 1.89
3018 3587 7.112452 TCACTCTGCATATTGCTCTAAGTAA 57.888 36.000 0.75 0.00 45.31 2.24
3019 3588 6.715347 TCACTCTGCATATTGCTCTAAGTA 57.285 37.500 0.75 0.00 45.31 2.24
3020 3589 5.604758 TCACTCTGCATATTGCTCTAAGT 57.395 39.130 0.75 0.00 45.31 2.24
3073 3642 6.771934 TGATAGTCTAGGATTCAGAGGAGA 57.228 41.667 0.00 0.00 0.00 3.71
3103 3672 7.511371 TGGCCTAAGGAATAGCTATAGTGTTTA 59.489 37.037 6.68 2.12 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.