Multiple sequence alignment - TraesCS6B01G428600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G428600 chr6B 100.000 6342 0 0 1 6342 696635643 696641984 0.000000e+00 11712
1 TraesCS6B01G428600 chr6D 91.525 4401 221 59 1931 6249 458361814 458366144 0.000000e+00 5921
2 TraesCS6B01G428600 chr6D 88.168 1141 52 30 823 1891 458360691 458361820 0.000000e+00 1282
3 TraesCS6B01G428600 chr6D 78.429 751 53 39 91 748 458359579 458360313 7.710000e-104 388
4 TraesCS6B01G428600 chr6D 95.890 73 3 0 6258 6330 458366218 458366290 1.120000e-22 119
5 TraesCS6B01G428600 chr6A 90.995 3798 223 49 2514 6249 605232332 605228592 0.000000e+00 5009
6 TraesCS6B01G428600 chr6A 84.091 1364 68 52 644 1891 605234194 605232864 0.000000e+00 1179
7 TraesCS6B01G428600 chr6A 88.151 557 43 16 1931 2482 605232870 605232332 5.360000e-180 641


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G428600 chr6B 696635643 696641984 6341 False 11712.000000 11712 100.000000 1 6342 1 chr6B.!!$F1 6341
1 TraesCS6B01G428600 chr6D 458359579 458366290 6711 False 1927.500000 5921 88.503000 91 6330 4 chr6D.!!$F1 6239
2 TraesCS6B01G428600 chr6A 605228592 605234194 5602 True 2276.333333 5009 87.745667 644 6249 3 chr6A.!!$R1 5605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.107312 CCTCCCCAGCTCAAGTGATG 60.107 60.0 0.0 0.0 0.0 3.07 F
1893 2411 0.107263 ATCACCTGCACACACACACA 60.107 50.0 0.0 0.0 0.0 3.72 F
2049 2573 0.113972 ACCTATACCTACCGGCTCCC 59.886 60.0 0.0 0.0 0.0 4.30 F
2992 3528 0.040067 CTGAAGCAAAACGTCTGGCC 60.040 55.0 0.0 0.0 0.0 5.36 F
3882 4421 0.119155 AAGGATCAGGAGTGTGGGGA 59.881 55.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2420 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.00 0.0 0.00 3.82 R
2846 3382 0.176449 CATGTCTCCTCATGCCGTGA 59.824 55.0 0.00 0.0 38.65 4.35 R
3804 4340 0.732880 CACACTTCTACGTGCTCCCG 60.733 60.0 0.00 0.0 38.45 5.14 R
4157 4696 0.177141 TCACTAATAGCCACGGCACC 59.823 55.0 11.35 0.0 44.88 5.01 R
5476 6036 0.244450 AAGGCACACATTTGGCATCG 59.756 50.0 0.00 0.0 44.44 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.532896 TGAGGAAACGCAGACATCC 57.467 52.632 0.00 0.00 34.19 3.51
23 24 0.389817 TGAGGAAACGCAGACATCCG 60.390 55.000 0.00 0.00 37.05 4.18
24 25 0.389948 GAGGAAACGCAGACATCCGT 60.390 55.000 0.00 0.00 39.70 4.69
25 26 0.670546 AGGAAACGCAGACATCCGTG 60.671 55.000 0.00 0.00 37.79 4.94
26 27 1.132640 GAAACGCAGACATCCGTGC 59.867 57.895 0.00 0.00 37.79 5.34
30 31 2.125912 GCAGACATCCGTGCGTCT 60.126 61.111 0.00 0.00 43.23 4.18
31 32 1.738099 GCAGACATCCGTGCGTCTT 60.738 57.895 0.00 0.00 40.50 3.01
32 33 1.959899 GCAGACATCCGTGCGTCTTG 61.960 60.000 0.00 0.00 40.50 3.02
33 34 1.079819 AGACATCCGTGCGTCTTGG 60.080 57.895 0.00 0.00 39.45 3.61
34 35 2.740714 GACATCCGTGCGTCTTGGC 61.741 63.158 0.00 0.00 0.00 4.52
35 36 2.434884 CATCCGTGCGTCTTGGCT 60.435 61.111 0.00 0.00 0.00 4.75
36 37 2.125512 ATCCGTGCGTCTTGGCTC 60.126 61.111 0.00 0.00 0.00 4.70
37 38 2.942796 ATCCGTGCGTCTTGGCTCA 61.943 57.895 0.00 0.00 0.00 4.26
38 39 3.414700 CCGTGCGTCTTGGCTCAC 61.415 66.667 0.00 0.00 0.00 3.51
39 40 3.414700 CGTGCGTCTTGGCTCACC 61.415 66.667 0.00 0.00 0.00 4.02
40 41 2.031163 GTGCGTCTTGGCTCACCT 59.969 61.111 0.00 0.00 36.63 4.00
41 42 2.029844 GTGCGTCTTGGCTCACCTC 61.030 63.158 0.00 0.00 36.63 3.85
42 43 2.435059 GCGTCTTGGCTCACCTCC 60.435 66.667 0.00 0.00 36.63 4.30
43 44 2.266055 CGTCTTGGCTCACCTCCC 59.734 66.667 0.00 0.00 36.63 4.30
44 45 2.671682 GTCTTGGCTCACCTCCCC 59.328 66.667 0.00 0.00 36.63 4.81
45 46 2.206900 TCTTGGCTCACCTCCCCA 59.793 61.111 0.00 0.00 36.63 4.96
46 47 1.920325 TCTTGGCTCACCTCCCCAG 60.920 63.158 0.00 0.00 36.63 4.45
47 48 3.635268 CTTGGCTCACCTCCCCAGC 62.635 68.421 0.00 0.00 36.63 4.85
48 49 4.664267 TGGCTCACCTCCCCAGCT 62.664 66.667 0.00 0.00 36.63 4.24
49 50 3.791586 GGCTCACCTCCCCAGCTC 61.792 72.222 0.00 0.00 33.38 4.09
50 51 3.005539 GCTCACCTCCCCAGCTCA 61.006 66.667 0.00 0.00 0.00 4.26
51 52 2.596851 GCTCACCTCCCCAGCTCAA 61.597 63.158 0.00 0.00 0.00 3.02
52 53 1.601171 CTCACCTCCCCAGCTCAAG 59.399 63.158 0.00 0.00 0.00 3.02
53 54 1.152030 TCACCTCCCCAGCTCAAGT 60.152 57.895 0.00 0.00 0.00 3.16
54 55 1.002868 CACCTCCCCAGCTCAAGTG 60.003 63.158 0.00 0.00 0.00 3.16
55 56 1.152030 ACCTCCCCAGCTCAAGTGA 60.152 57.895 0.00 0.00 0.00 3.41
56 57 0.548682 ACCTCCCCAGCTCAAGTGAT 60.549 55.000 0.00 0.00 0.00 3.06
57 58 0.107312 CCTCCCCAGCTCAAGTGATG 60.107 60.000 0.00 0.00 0.00 3.07
58 59 0.907486 CTCCCCAGCTCAAGTGATGA 59.093 55.000 0.00 0.00 36.38 2.92
59 60 1.489649 CTCCCCAGCTCAAGTGATGAT 59.510 52.381 0.00 0.00 37.44 2.45
60 61 1.918262 TCCCCAGCTCAAGTGATGATT 59.082 47.619 0.00 0.00 37.44 2.57
61 62 2.022195 CCCCAGCTCAAGTGATGATTG 58.978 52.381 0.00 0.00 37.44 2.67
62 63 2.356432 CCCCAGCTCAAGTGATGATTGA 60.356 50.000 0.00 0.00 37.44 2.57
63 64 3.552875 CCCAGCTCAAGTGATGATTGAT 58.447 45.455 0.00 0.00 37.44 2.57
64 65 3.952323 CCCAGCTCAAGTGATGATTGATT 59.048 43.478 0.00 0.00 37.44 2.57
65 66 5.128205 CCCAGCTCAAGTGATGATTGATTA 58.872 41.667 0.00 0.00 37.44 1.75
66 67 5.591472 CCCAGCTCAAGTGATGATTGATTAA 59.409 40.000 0.00 0.00 37.44 1.40
67 68 6.264744 CCCAGCTCAAGTGATGATTGATTAAT 59.735 38.462 0.00 0.00 37.44 1.40
68 69 7.201884 CCCAGCTCAAGTGATGATTGATTAATT 60.202 37.037 0.00 0.00 37.44 1.40
69 70 8.843262 CCAGCTCAAGTGATGATTGATTAATTA 58.157 33.333 0.00 0.00 37.44 1.40
85 86 9.621629 TTGATTAATTAAATAAAGCCGAGGAGA 57.378 29.630 1.21 0.00 0.00 3.71
86 87 9.621629 TGATTAATTAAATAAAGCCGAGGAGAA 57.378 29.630 1.21 0.00 0.00 2.87
89 90 6.944234 ATTAAATAAAGCCGAGGAGAAAGG 57.056 37.500 0.00 0.00 0.00 3.11
134 135 2.549754 ACTGACGGATTTGACAAGCAAG 59.450 45.455 0.00 0.00 37.87 4.01
143 144 2.892334 GACAAGCAAGCGCAACCGA 61.892 57.895 11.47 0.00 42.27 4.69
144 145 2.127118 CAAGCAAGCGCAACCGAG 60.127 61.111 11.47 0.00 42.27 4.63
165 178 2.581637 CGCTACTATTGCTAATCGCGA 58.418 47.619 13.09 13.09 43.27 5.87
170 183 0.386476 TATTGCTAATCGCGACCGGT 59.614 50.000 12.93 6.92 43.27 5.28
171 184 1.151777 ATTGCTAATCGCGACCGGTG 61.152 55.000 14.63 5.62 43.27 4.94
232 258 2.908073 CGCGGCCCATTAATGAGCC 61.908 63.158 26.56 26.56 46.89 4.70
250 276 4.600576 TTCACGTGCTCTGCGCCA 62.601 61.111 11.67 0.00 38.05 5.69
256 282 3.619767 TGCTCTGCGCCACACTCT 61.620 61.111 4.18 0.00 38.05 3.24
257 283 3.117171 GCTCTGCGCCACACTCTG 61.117 66.667 4.18 0.00 0.00 3.35
259 285 4.687215 TCTGCGCCACACTCTGCC 62.687 66.667 4.18 0.00 0.00 4.85
263 289 4.767255 CGCCACACTCTGCCCTCC 62.767 72.222 0.00 0.00 0.00 4.30
264 290 3.325753 GCCACACTCTGCCCTCCT 61.326 66.667 0.00 0.00 0.00 3.69
265 291 2.985456 CCACACTCTGCCCTCCTC 59.015 66.667 0.00 0.00 0.00 3.71
266 292 2.664081 CCACACTCTGCCCTCCTCC 61.664 68.421 0.00 0.00 0.00 4.30
267 293 2.284995 ACACTCTGCCCTCCTCCC 60.285 66.667 0.00 0.00 0.00 4.30
268 294 3.465403 CACTCTGCCCTCCTCCCG 61.465 72.222 0.00 0.00 0.00 5.14
269 295 3.999285 ACTCTGCCCTCCTCCCGT 61.999 66.667 0.00 0.00 0.00 5.28
270 296 3.151022 CTCTGCCCTCCTCCCGTC 61.151 72.222 0.00 0.00 0.00 4.79
271 297 3.670629 CTCTGCCCTCCTCCCGTCT 62.671 68.421 0.00 0.00 0.00 4.18
272 298 3.151022 CTGCCCTCCTCCCGTCTC 61.151 72.222 0.00 0.00 0.00 3.36
273 299 4.779733 TGCCCTCCTCCCGTCTCC 62.780 72.222 0.00 0.00 0.00 3.71
275 301 3.756783 CCCTCCTCCCGTCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
276 302 2.123640 CCTCCTCCCGTCTCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
277 303 2.517402 CTCCTCCCGTCTCCCTCG 60.517 72.222 0.00 0.00 0.00 4.63
308 334 2.270527 GCTCCAGCTCCACTTCCC 59.729 66.667 0.00 0.00 38.21 3.97
309 335 2.596851 GCTCCAGCTCCACTTCCCA 61.597 63.158 0.00 0.00 38.21 4.37
310 336 1.298014 CTCCAGCTCCACTTCCCAC 59.702 63.158 0.00 0.00 0.00 4.61
320 351 2.456840 CTTCCCACTCCCCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
358 395 1.294138 GCCGGGTACTACTGCAACA 59.706 57.895 2.18 0.00 0.00 3.33
375 412 2.493675 CAACACTCCTAGCTGCTACAGA 59.506 50.000 5.02 4.99 32.44 3.41
388 425 1.532078 TACAGACACGGCACCTCCA 60.532 57.895 0.00 0.00 34.01 3.86
398 435 0.907230 GGCACCTCCACTCTTCTCCT 60.907 60.000 0.00 0.00 34.01 3.69
406 443 0.108898 CACTCTTCTCCTCCAGCACG 60.109 60.000 0.00 0.00 0.00 5.34
439 476 4.593864 GCCGAGCCTCCACCGATC 62.594 72.222 0.00 0.00 0.00 3.69
441 478 4.933064 CGAGCCTCCACCGATCGC 62.933 72.222 10.32 0.00 0.00 4.58
442 479 3.532155 GAGCCTCCACCGATCGCT 61.532 66.667 10.32 0.00 0.00 4.93
443 480 3.077556 AGCCTCCACCGATCGCTT 61.078 61.111 10.32 0.00 0.00 4.68
444 481 2.892425 GCCTCCACCGATCGCTTG 60.892 66.667 10.32 8.77 0.00 4.01
446 483 2.185350 CTCCACCGATCGCTTGCT 59.815 61.111 10.32 0.00 0.00 3.91
557 617 1.746615 CATCTCACCCTTGGCACGG 60.747 63.158 2.41 2.41 0.00 4.94
773 880 1.082104 CGCCTCACTTTGCCGTTTC 60.082 57.895 0.00 0.00 0.00 2.78
774 881 1.082104 GCCTCACTTTGCCGTTTCG 60.082 57.895 0.00 0.00 0.00 3.46
814 921 1.204941 CGTTCGTCCCTTCTCATTCCT 59.795 52.381 0.00 0.00 0.00 3.36
815 922 2.353803 CGTTCGTCCCTTCTCATTCCTT 60.354 50.000 0.00 0.00 0.00 3.36
816 923 3.676093 GTTCGTCCCTTCTCATTCCTTT 58.324 45.455 0.00 0.00 0.00 3.11
817 924 3.611766 TCGTCCCTTCTCATTCCTTTC 57.388 47.619 0.00 0.00 0.00 2.62
818 925 2.094182 TCGTCCCTTCTCATTCCTTTCG 60.094 50.000 0.00 0.00 0.00 3.46
819 926 2.010497 GTCCCTTCTCATTCCTTTCGC 58.990 52.381 0.00 0.00 0.00 4.70
820 927 1.909302 TCCCTTCTCATTCCTTTCGCT 59.091 47.619 0.00 0.00 0.00 4.93
821 928 2.093447 TCCCTTCTCATTCCTTTCGCTC 60.093 50.000 0.00 0.00 0.00 5.03
892 1300 2.062070 CCCTCCCCTCGATCAATCC 58.938 63.158 0.00 0.00 0.00 3.01
893 1301 0.764369 CCCTCCCCTCGATCAATCCA 60.764 60.000 0.00 0.00 0.00 3.41
894 1302 1.131638 CCTCCCCTCGATCAATCCAA 58.868 55.000 0.00 0.00 0.00 3.53
895 1303 1.701847 CCTCCCCTCGATCAATCCAAT 59.298 52.381 0.00 0.00 0.00 3.16
897 1305 2.636893 CTCCCCTCGATCAATCCAATCT 59.363 50.000 0.00 0.00 0.00 2.40
899 1307 2.636893 CCCCTCGATCAATCCAATCTCT 59.363 50.000 0.00 0.00 0.00 3.10
900 1308 3.306641 CCCCTCGATCAATCCAATCTCTC 60.307 52.174 0.00 0.00 0.00 3.20
902 1310 4.321899 CCCTCGATCAATCCAATCTCTCTC 60.322 50.000 0.00 0.00 0.00 3.20
904 1312 5.335897 CCTCGATCAATCCAATCTCTCTCTC 60.336 48.000 0.00 0.00 0.00 3.20
905 1313 4.522405 TCGATCAATCCAATCTCTCTCTCC 59.478 45.833 0.00 0.00 0.00 3.71
906 1314 4.523943 CGATCAATCCAATCTCTCTCTCCT 59.476 45.833 0.00 0.00 0.00 3.69
907 1315 5.010922 CGATCAATCCAATCTCTCTCTCCTT 59.989 44.000 0.00 0.00 0.00 3.36
911 1319 3.027412 TCCAATCTCTCTCTCCTTTCCG 58.973 50.000 0.00 0.00 0.00 4.30
912 1320 2.763448 CCAATCTCTCTCTCCTTTCCGT 59.237 50.000 0.00 0.00 0.00 4.69
914 1322 4.037446 CCAATCTCTCTCTCCTTTCCGTAG 59.963 50.000 0.00 0.00 0.00 3.51
953 1372 2.031157 AGTCAAGAAAAATTCACGCCGG 60.031 45.455 0.00 0.00 0.00 6.13
1016 1436 5.067954 CCACTCCATGAATGAATGCTATCA 58.932 41.667 0.00 0.00 0.00 2.15
1026 1446 7.372714 TGAATGAATGCTATCATAATTGCCAC 58.627 34.615 5.42 0.00 39.08 5.01
1072 1518 4.096003 CCATTGCCGACCCCGACT 62.096 66.667 0.00 0.00 38.22 4.18
1073 1519 2.046314 CATTGCCGACCCCGACTT 60.046 61.111 0.00 0.00 38.22 3.01
1074 1520 2.046314 ATTGCCGACCCCGACTTG 60.046 61.111 0.00 0.00 38.22 3.16
1097 1549 3.068691 CCGCGTCCTCTTCCTCCA 61.069 66.667 4.92 0.00 0.00 3.86
1267 1736 3.445687 CCGCCGCCCCTTTTAACC 61.446 66.667 0.00 0.00 0.00 2.85
1391 1885 0.880718 GACTTTCCCCATCGATCCGC 60.881 60.000 0.00 0.00 0.00 5.54
1510 2024 3.792736 TTCCGGGCAGGGAATCCG 61.793 66.667 0.00 0.00 41.08 4.18
1611 2128 3.306433 GCCGAGATAAGATTTCCTCCTCC 60.306 52.174 0.00 0.00 0.00 4.30
1640 2157 0.955919 GGGGCAGGACGACAAGAAAG 60.956 60.000 0.00 0.00 0.00 2.62
1649 2166 0.669318 CGACAAGAAAGGCCGCTGTA 60.669 55.000 0.00 0.00 0.00 2.74
1715 2232 0.521291 CTTTTCCGGCTGCGAAATCA 59.479 50.000 0.00 0.00 0.00 2.57
1837 2354 1.332686 ACCGCTTTTTGTTCCGTTCTC 59.667 47.619 0.00 0.00 0.00 2.87
1886 2404 2.361610 CCCCCATCACCTGCACAC 60.362 66.667 0.00 0.00 0.00 3.82
1887 2405 2.435663 CCCCATCACCTGCACACA 59.564 61.111 0.00 0.00 0.00 3.72
1888 2406 1.973281 CCCCATCACCTGCACACAC 60.973 63.158 0.00 0.00 0.00 3.82
1889 2407 1.228215 CCCATCACCTGCACACACA 60.228 57.895 0.00 0.00 0.00 3.72
1890 2408 1.518056 CCCATCACCTGCACACACAC 61.518 60.000 0.00 0.00 0.00 3.82
1891 2409 0.818852 CCATCACCTGCACACACACA 60.819 55.000 0.00 0.00 0.00 3.72
1892 2410 0.308684 CATCACCTGCACACACACAC 59.691 55.000 0.00 0.00 0.00 3.82
1893 2411 0.107263 ATCACCTGCACACACACACA 60.107 50.000 0.00 0.00 0.00 3.72
1894 2412 1.024046 TCACCTGCACACACACACAC 61.024 55.000 0.00 0.00 0.00 3.82
1895 2413 1.002746 ACCTGCACACACACACACA 60.003 52.632 0.00 0.00 0.00 3.72
1896 2414 1.305219 ACCTGCACACACACACACAC 61.305 55.000 0.00 0.00 0.00 3.82
1897 2415 1.304509 CCTGCACACACACACACACA 61.305 55.000 0.00 0.00 0.00 3.72
1898 2416 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1899 2417 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
1900 2418 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1901 2419 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1902 2420 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1903 2421 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1904 2422 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1905 2423 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1906 2424 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1907 2425 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1908 2426 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1909 2427 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1910 2428 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1911 2429 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1912 2430 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1913 2431 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1914 2432 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1915 2433 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1916 2434 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1917 2435 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1918 2436 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1919 2437 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1920 2438 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1921 2439 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1922 2440 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
1923 2441 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
1924 2442 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
1925 2443 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
1926 2444 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
1927 2445 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
1928 2446 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
1929 2447 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
1953 2471 5.726245 CACACACGATTCAAAACATTTTGG 58.274 37.500 15.27 4.04 45.68 3.28
1985 2504 2.409948 AACCTAGCTGCTGTTCATCC 57.590 50.000 13.43 0.00 0.00 3.51
1986 2505 0.176680 ACCTAGCTGCTGTTCATCCG 59.823 55.000 13.43 0.00 0.00 4.18
2012 2531 4.212004 GCCCTGCTTCAGATTTTGAAAAAC 59.788 41.667 0.00 0.00 44.84 2.43
2014 2533 5.816777 CCCTGCTTCAGATTTTGAAAAACAA 59.183 36.000 0.00 0.00 44.84 2.83
2015 2534 6.484308 CCCTGCTTCAGATTTTGAAAAACAAT 59.516 34.615 0.00 0.00 44.84 2.71
2016 2535 7.307573 CCCTGCTTCAGATTTTGAAAAACAATC 60.308 37.037 0.00 0.00 44.84 2.67
2019 2538 9.165035 TGCTTCAGATTTTGAAAAACAATCTTT 57.835 25.926 0.00 0.00 44.84 2.52
2023 2542 9.889128 TCAGATTTTGAAAAACAATCTTTCCTT 57.111 25.926 0.00 0.00 38.36 3.36
2049 2573 0.113972 ACCTATACCTACCGGCTCCC 59.886 60.000 0.00 0.00 0.00 4.30
2063 2587 3.976701 CTCCCGCATTGAAGGCCGT 62.977 63.158 0.00 0.00 0.00 5.68
2096 2620 0.803768 CGTCCTCCGTGCAGATGAAG 60.804 60.000 0.00 0.00 0.00 3.02
2132 2656 2.766345 AGCAGAAGAAGAAGCAGGAG 57.234 50.000 0.00 0.00 0.00 3.69
2275 2811 1.475403 CTCCTCGCCCTTCTCTTGTA 58.525 55.000 0.00 0.00 0.00 2.41
2278 2814 2.025605 TCCTCGCCCTTCTCTTGTACTA 60.026 50.000 0.00 0.00 0.00 1.82
2279 2815 2.099427 CCTCGCCCTTCTCTTGTACTAC 59.901 54.545 0.00 0.00 0.00 2.73
2281 2817 4.197750 CTCGCCCTTCTCTTGTACTACTA 58.802 47.826 0.00 0.00 0.00 1.82
2282 2818 3.944015 TCGCCCTTCTCTTGTACTACTAC 59.056 47.826 0.00 0.00 0.00 2.73
2283 2819 3.946558 CGCCCTTCTCTTGTACTACTACT 59.053 47.826 0.00 0.00 0.00 2.57
2284 2820 5.104776 TCGCCCTTCTCTTGTACTACTACTA 60.105 44.000 0.00 0.00 0.00 1.82
2285 2821 5.007528 CGCCCTTCTCTTGTACTACTACTAC 59.992 48.000 0.00 0.00 0.00 2.73
2286 2822 5.884792 GCCCTTCTCTTGTACTACTACTACA 59.115 44.000 0.00 0.00 0.00 2.74
2287 2823 6.546772 GCCCTTCTCTTGTACTACTACTACAT 59.453 42.308 0.00 0.00 0.00 2.29
2288 2824 7.068470 GCCCTTCTCTTGTACTACTACTACATT 59.932 40.741 0.00 0.00 0.00 2.71
2289 2825 8.968969 CCCTTCTCTTGTACTACTACTACATTT 58.031 37.037 0.00 0.00 0.00 2.32
2319 2855 1.086696 TTCTGCTTCCTGTTATGCGC 58.913 50.000 0.00 0.00 0.00 6.09
2332 2868 4.408821 TGCGCCGGCATTCTCCTT 62.409 61.111 28.98 0.00 46.21 3.36
2333 2869 3.577313 GCGCCGGCATTCTCCTTC 61.577 66.667 28.98 0.00 39.62 3.46
2334 2870 2.187946 CGCCGGCATTCTCCTTCT 59.812 61.111 28.98 0.00 0.00 2.85
2336 2872 1.884926 GCCGGCATTCTCCTTCTCG 60.885 63.158 24.80 0.00 0.00 4.04
2337 2873 1.227380 CCGGCATTCTCCTTCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
2359 2895 2.658802 CGATCTCTGATGCGATTTACCG 59.341 50.000 0.00 0.00 0.00 4.02
2386 2922 2.032681 GCAGTTTCTCCGGCTGGT 59.967 61.111 12.43 0.00 36.30 4.00
2417 2953 1.450312 GGTGGTCTCAAGATGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
2428 2964 2.614057 CAAGATGGCGGGTAATCAGTTC 59.386 50.000 0.00 0.00 0.00 3.01
2437 2973 2.418334 GGGTAATCAGTTCCCGAGTCAC 60.418 54.545 0.00 0.00 0.00 3.67
2443 2979 0.898320 AGTTCCCGAGTCACATGGAG 59.102 55.000 0.00 0.00 0.00 3.86
2462 2998 7.813645 CATGGAGGATAAACATGTATGTGATG 58.186 38.462 0.00 0.00 41.61 3.07
2485 3021 1.206371 GCCAATGCTTCATGCTCCTTT 59.794 47.619 0.00 0.00 43.37 3.11
2492 3028 4.121317 TGCTTCATGCTCCTTTTGTTTTG 58.879 39.130 0.00 0.00 43.37 2.44
2543 3079 8.317679 AGCTTTGTTAACTGATATCTGTTCTCT 58.682 33.333 25.72 9.80 38.62 3.10
2544 3080 8.940952 GCTTTGTTAACTGATATCTGTTCTCTT 58.059 33.333 25.72 9.48 38.62 2.85
2618 3154 1.886542 GATCAAACTCACCCACCAACC 59.113 52.381 0.00 0.00 0.00 3.77
2632 3168 2.126071 AACCGATCTGGCGTGTCG 60.126 61.111 3.85 0.00 43.94 4.35
2666 3202 1.077212 ATGGAGCAGGACATGTGGC 60.077 57.895 1.15 4.14 0.00 5.01
2676 3212 2.825836 CATGTGGCGAGAAGGGGC 60.826 66.667 0.00 0.00 0.00 5.80
2800 3336 1.289109 AAGACGACGGCCGAAATGTG 61.289 55.000 35.90 16.12 41.76 3.21
2846 3382 0.622665 CCAGAACCAGAAGGCAGGAT 59.377 55.000 0.00 0.00 39.06 3.24
2908 3444 2.732366 TCGAAGATCGATAGCAGCAAC 58.268 47.619 0.00 0.00 44.82 4.17
2962 3498 1.739067 GGAGAATGTCCCTTGTTCGG 58.261 55.000 0.00 0.00 39.88 4.30
2992 3528 0.040067 CTGAAGCAAAACGTCTGGCC 60.040 55.000 0.00 0.00 0.00 5.36
3207 3743 3.771216 AGAGAAAGGGCAACATTCATGT 58.229 40.909 0.00 0.00 41.67 3.21
3254 3790 1.888215 TGAAGCTGAAGGCAACAGAG 58.112 50.000 13.53 0.00 44.79 3.35
3299 3835 1.611491 TCAACCCGGCAAATTCAACTC 59.389 47.619 0.00 0.00 0.00 3.01
3338 3874 1.737199 TGTGGTACTAAAGCCAGGGT 58.263 50.000 0.00 0.00 35.14 4.34
3377 3913 1.381928 TACGATCCCAGTGTCCTCGC 61.382 60.000 0.00 0.00 32.81 5.03
3496 4032 4.025061 CAGATGAGGATGCGCTTAAAAGAG 60.025 45.833 9.73 0.00 0.00 2.85
3640 4176 0.683412 AGTTTGGTACTCCCACGTCC 59.317 55.000 0.00 0.00 45.19 4.79
3700 4236 0.464013 ACTCTGCATCATGCTCCAGC 60.464 55.000 11.84 0.00 45.31 4.85
3706 4242 3.769369 ATCATGCTCCAGCCAGGCG 62.769 63.158 5.55 0.53 41.18 5.52
3712 4248 4.329545 TCCAGCCAGGCGTCCAAC 62.330 66.667 5.55 0.00 37.29 3.77
3733 4269 2.732094 CGTGAACCGTCGGTGGTC 60.732 66.667 19.67 13.48 42.89 4.02
3804 4340 2.737252 CTGTTAGTGGCGAGGAAGAAAC 59.263 50.000 0.00 0.00 0.00 2.78
3882 4421 0.119155 AAGGATCAGGAGTGTGGGGA 59.881 55.000 0.00 0.00 0.00 4.81
4001 4540 1.263356 CAGGGAGTCGAACAGGGTTA 58.737 55.000 0.00 0.00 0.00 2.85
4059 4598 5.316158 AGGAAGTCATCATCATTTAGGGG 57.684 43.478 0.00 0.00 0.00 4.79
4096 4635 7.503902 AGCCTGTTCTCTAAAAACAAGAAATCT 59.496 33.333 0.00 0.00 36.27 2.40
4100 4639 9.337396 TGTTCTCTAAAAACAAGAAATCTGCTA 57.663 29.630 0.00 0.00 33.86 3.49
4157 4696 8.893219 TGCTAATAATACACTCAAGAATGGAG 57.107 34.615 0.00 0.00 0.00 3.86
4243 4782 4.756084 AACTACTTTGCTTGATGCTGAC 57.244 40.909 0.00 0.00 43.37 3.51
4246 4785 1.532868 ACTTTGCTTGATGCTGACGAC 59.467 47.619 0.00 0.00 43.37 4.34
4492 5051 2.305927 TCTTGGTGTCCCAGGATTCTTC 59.694 50.000 0.00 0.00 41.57 2.87
4613 5172 3.680620 ATCACCGCATCCCCACGTG 62.681 63.158 9.08 9.08 0.00 4.49
4676 5236 4.614555 TCGTTGTGTAATGGCATTCATC 57.385 40.909 17.41 9.22 34.44 2.92
4677 5237 4.006319 TCGTTGTGTAATGGCATTCATCA 58.994 39.130 17.41 11.66 34.44 3.07
4678 5238 4.639755 TCGTTGTGTAATGGCATTCATCAT 59.360 37.500 17.41 0.00 34.44 2.45
4819 5379 0.532573 TCTCCAAGGCTGATGACGAC 59.467 55.000 0.00 0.00 0.00 4.34
4900 5460 0.106894 GCGTATTAGCCAGCCCTCTT 59.893 55.000 0.00 0.00 0.00 2.85
5011 5571 2.507102 ATCAACGAGGCGCTCACG 60.507 61.111 7.64 13.32 44.07 4.35
5012 5572 2.989881 ATCAACGAGGCGCTCACGA 61.990 57.895 22.26 7.60 43.93 4.35
5029 5589 1.621301 CGAAGCTCACTTGGACAGCG 61.621 60.000 0.00 0.00 38.26 5.18
5033 5593 0.674895 GCTCACTTGGACAGCGGAAT 60.675 55.000 0.00 0.00 0.00 3.01
5083 5643 1.318251 GTTCGCAACGCAAAGATCAC 58.682 50.000 0.00 0.00 0.00 3.06
5110 5670 0.460311 ATTCCTCCTGTAACTCCGCG 59.540 55.000 0.00 0.00 0.00 6.46
5170 5730 0.612732 TCGACAAGTATCCACCCGGT 60.613 55.000 0.00 0.00 0.00 5.28
5194 5754 3.436243 AGTCATCGAGAGGAACCTTCTT 58.564 45.455 0.00 0.00 0.00 2.52
5287 5847 2.512515 GAGGTCTGCGCCATGGTC 60.513 66.667 14.67 6.40 0.00 4.02
5300 5860 1.302511 ATGGTCTGCACGGTGGTTC 60.303 57.895 10.60 0.00 0.00 3.62
5332 5892 2.122768 CTTGAGGAGGCCCTTGTAGAT 58.877 52.381 0.00 0.00 44.53 1.98
5374 5934 1.683418 GGTACCTCCGCCCCTAACTG 61.683 65.000 4.06 0.00 0.00 3.16
5379 5939 0.541863 CTCCGCCCCTAACTGTTGAT 59.458 55.000 2.69 0.00 0.00 2.57
5399 5959 1.149101 TTTTGCCTCTCCCCAACTCT 58.851 50.000 0.00 0.00 0.00 3.24
5404 5964 0.827368 CCTCTCCCCAACTCTGTAGC 59.173 60.000 0.00 0.00 0.00 3.58
5406 5966 0.251653 TCTCCCCAACTCTGTAGCGT 60.252 55.000 0.00 0.00 0.00 5.07
5456 6016 6.100004 TCTGCTGTAACACTGCTCTATTTAC 58.900 40.000 9.18 0.00 42.56 2.01
5468 6028 2.785477 CTCTATTTACCGTGTTACCGCG 59.215 50.000 0.00 0.00 44.04 6.46
5476 6036 0.791610 CGTGTTACCGCGGAAAATGC 60.792 55.000 35.90 18.73 40.82 3.56
5504 6064 4.220382 CCAAATGTGTGCCTTTTCCTGATA 59.780 41.667 0.00 0.00 0.00 2.15
5507 6067 6.949352 AATGTGTGCCTTTTCCTGATATAG 57.051 37.500 0.00 0.00 0.00 1.31
5516 6076 3.944476 CCTGATATAGGGGTGCTGC 57.056 57.895 0.00 0.00 43.33 5.25
5555 6132 4.590400 TTGTTTGCCGTTTTGACAAATG 57.410 36.364 0.50 0.00 35.87 2.32
5563 6140 3.184178 CCGTTTTGACAAATGAACCATGC 59.816 43.478 0.50 0.00 31.28 4.06
5587 6164 5.882000 CCAGTGTTGAAGGTTATCATCATCA 59.118 40.000 0.00 0.00 33.10 3.07
5588 6165 6.544931 CCAGTGTTGAAGGTTATCATCATCAT 59.455 38.462 0.00 0.00 33.10 2.45
5599 6176 7.443575 AGGTTATCATCATCATCTTTTCCTTCG 59.556 37.037 0.00 0.00 0.00 3.79
5607 6184 9.838339 ATCATCATCTTTTCCTTCGTTAATACT 57.162 29.630 0.00 0.00 0.00 2.12
5650 6227 3.451402 TGTCCTCCTGTAGTAAGCTGA 57.549 47.619 0.00 0.00 0.00 4.26
5658 6235 3.935203 CCTGTAGTAAGCTGATGGTGTTG 59.065 47.826 0.00 0.00 0.00 3.33
5670 6247 5.675575 GCTGATGGTGTTGCTTGAATTAGAG 60.676 44.000 0.00 0.00 0.00 2.43
5733 6320 5.796350 ACAAAAGACAGTAACATATCGCC 57.204 39.130 0.00 0.00 0.00 5.54
5788 6375 4.845225 AGTAGAAGCCATGATCTGATCCAT 59.155 41.667 14.71 6.08 0.00 3.41
5839 6426 3.120060 GCTCACAAGGCACTGTAATCTTG 60.120 47.826 12.33 12.33 40.86 3.02
5846 6433 5.852282 AGGCACTGTAATCTTGTTTTGTT 57.148 34.783 0.00 0.00 37.18 2.83
5869 6456 4.521146 AGGATCCATGTCAACTGTGATTC 58.479 43.478 15.82 0.00 35.80 2.52
5870 6457 4.019051 AGGATCCATGTCAACTGTGATTCA 60.019 41.667 15.82 0.00 35.80 2.57
5877 6464 6.427974 CATGTCAACTGTGATTCATCTATGC 58.572 40.000 0.00 0.00 35.80 3.14
5879 6466 5.814188 TGTCAACTGTGATTCATCTATGCTC 59.186 40.000 0.00 0.00 35.80 4.26
5907 6494 5.437289 TCAGAGCACCATTTGTTTACTTG 57.563 39.130 0.00 0.00 0.00 3.16
5908 6495 4.278170 TCAGAGCACCATTTGTTTACTTGG 59.722 41.667 0.00 0.00 35.31 3.61
5931 6534 1.073923 CCACCCCACTAGAGCAAAACT 59.926 52.381 0.00 0.00 0.00 2.66
5933 6536 3.244770 CCACCCCACTAGAGCAAAACTAA 60.245 47.826 0.00 0.00 0.00 2.24
5934 6537 3.751698 CACCCCACTAGAGCAAAACTAAC 59.248 47.826 0.00 0.00 0.00 2.34
5937 6540 4.505039 CCCCACTAGAGCAAAACTAACTGT 60.505 45.833 0.00 0.00 0.00 3.55
5939 6542 5.511545 CCCACTAGAGCAAAACTAACTGTCT 60.512 44.000 0.00 0.00 0.00 3.41
5940 6543 5.992217 CCACTAGAGCAAAACTAACTGTCTT 59.008 40.000 0.00 0.00 0.00 3.01
5941 6544 7.152645 CCACTAGAGCAAAACTAACTGTCTTA 58.847 38.462 0.00 0.00 0.00 2.10
5942 6545 7.329717 CCACTAGAGCAAAACTAACTGTCTTAG 59.670 40.741 0.00 0.00 0.00 2.18
5943 6546 6.869388 ACTAGAGCAAAACTAACTGTCTTAGC 59.131 38.462 0.00 0.00 0.00 3.09
5960 6570 2.577059 CAGCAGCAAGGCCAATGG 59.423 61.111 5.01 0.00 0.00 3.16
5963 6573 2.277591 GCAGCAAGGCCAATGGTGA 61.278 57.895 32.44 0.00 46.44 4.02
6053 6666 2.355716 CGATATCGGCATATTTGGGGGT 60.356 50.000 17.51 0.00 35.37 4.95
6056 6669 0.106419 TCGGCATATTTGGGGGTTCC 60.106 55.000 0.00 0.00 0.00 3.62
6082 6695 6.588756 CAGAAAATCAAAACCACATGAGATGG 59.411 38.462 0.00 0.00 43.43 3.51
6169 6782 1.593196 TTTGACTGAAGCTGGAACCG 58.407 50.000 0.00 0.00 0.00 4.44
6207 6820 0.400213 TGATCCCTGGTGTGGTGTTC 59.600 55.000 0.00 0.00 0.00 3.18
6208 6821 0.693049 GATCCCTGGTGTGGTGTTCT 59.307 55.000 0.00 0.00 0.00 3.01
6214 6827 0.322906 TGGTGTGGTGTTCTGTGCAA 60.323 50.000 0.00 0.00 0.00 4.08
6230 6843 5.997746 TCTGTGCAATCCCAGCTTATATTAC 59.002 40.000 0.00 0.00 0.00 1.89
6231 6844 5.940617 TGTGCAATCCCAGCTTATATTACT 58.059 37.500 0.00 0.00 0.00 2.24
6233 6846 5.412904 GTGCAATCCCAGCTTATATTACTCC 59.587 44.000 0.00 0.00 0.00 3.85
6236 6849 6.094603 GCAATCCCAGCTTATATTACTCCATG 59.905 42.308 0.00 0.00 0.00 3.66
6249 6862 2.775418 ACTCCATGTGACCCATATCCA 58.225 47.619 0.00 0.00 30.71 3.41
6250 6863 3.330198 ACTCCATGTGACCCATATCCAT 58.670 45.455 0.00 0.00 30.71 3.41
6252 6865 4.287067 ACTCCATGTGACCCATATCCATAC 59.713 45.833 0.00 0.00 30.71 2.39
6253 6866 3.587061 TCCATGTGACCCATATCCATACC 59.413 47.826 0.00 0.00 30.71 2.73
6254 6867 3.588842 CCATGTGACCCATATCCATACCT 59.411 47.826 0.00 0.00 30.71 3.08
6255 6868 4.566278 CCATGTGACCCATATCCATACCTG 60.566 50.000 0.00 0.00 30.71 4.00
6256 6869 2.978978 TGTGACCCATATCCATACCTGG 59.021 50.000 0.00 0.00 44.64 4.45
6305 6983 0.250727 GTAGGTGCATGTGGGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
6308 6986 1.518056 GGTGCATGTGGGTGTGTCAG 61.518 60.000 0.00 0.00 0.00 3.51
6322 7000 3.259314 TCAGCAGGGCCCACATGT 61.259 61.111 27.56 0.00 32.37 3.21
6330 7008 2.034687 GCCCACATGTCAGGCAGT 59.965 61.111 25.09 0.00 46.34 4.40
6331 7009 2.338015 GCCCACATGTCAGGCAGTG 61.338 63.158 25.09 0.64 46.34 3.66
6332 7010 3.991999 CCACATGTCAGGCAGTGG 58.008 61.111 8.65 8.65 44.72 4.00
6333 7011 2.338015 CCACATGTCAGGCAGTGGC 61.338 63.158 9.02 9.02 44.25 5.01
6334 7012 1.303074 CACATGTCAGGCAGTGGCT 60.303 57.895 14.51 14.51 40.87 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.035442 GTCTGCGTTTCCTCAGCCC 61.035 63.158 0.00 0.00 0.00 5.19
1 2 0.674895 ATGTCTGCGTTTCCTCAGCC 60.675 55.000 0.00 0.00 0.00 4.85
2 3 0.723981 GATGTCTGCGTTTCCTCAGC 59.276 55.000 0.00 0.00 0.00 4.26
3 4 1.363744 GGATGTCTGCGTTTCCTCAG 58.636 55.000 0.00 0.00 0.00 3.35
4 5 0.389817 CGGATGTCTGCGTTTCCTCA 60.390 55.000 0.00 0.00 0.00 3.86
5 6 2.373938 CGGATGTCTGCGTTTCCTC 58.626 57.895 0.00 0.00 0.00 3.71
6 7 4.598257 CGGATGTCTGCGTTTCCT 57.402 55.556 0.00 0.00 0.00 3.36
13 14 1.738099 AAGACGCACGGATGTCTGC 60.738 57.895 6.49 0.00 44.36 4.26
14 15 1.354337 CCAAGACGCACGGATGTCTG 61.354 60.000 6.49 2.56 44.36 3.51
15 16 1.079819 CCAAGACGCACGGATGTCT 60.080 57.895 0.00 0.54 46.98 3.41
16 17 2.740714 GCCAAGACGCACGGATGTC 61.741 63.158 0.00 0.00 35.33 3.06
17 18 2.742372 GCCAAGACGCACGGATGT 60.742 61.111 0.00 0.00 0.00 3.06
18 19 2.434884 AGCCAAGACGCACGGATG 60.435 61.111 0.00 0.00 0.00 3.51
19 20 2.125512 GAGCCAAGACGCACGGAT 60.126 61.111 0.00 0.00 0.00 4.18
20 21 3.611674 TGAGCCAAGACGCACGGA 61.612 61.111 0.00 0.00 0.00 4.69
21 22 3.414700 GTGAGCCAAGACGCACGG 61.415 66.667 0.00 0.00 30.71 4.94
22 23 3.414700 GGTGAGCCAAGACGCACG 61.415 66.667 0.00 0.00 40.77 5.34
23 24 2.029844 GAGGTGAGCCAAGACGCAC 61.030 63.158 0.00 0.00 39.35 5.34
24 25 2.343758 GAGGTGAGCCAAGACGCA 59.656 61.111 0.00 0.00 37.19 5.24
25 26 2.435059 GGAGGTGAGCCAAGACGC 60.435 66.667 0.00 0.00 37.19 5.19
26 27 2.266055 GGGAGGTGAGCCAAGACG 59.734 66.667 0.00 0.00 37.19 4.18
27 28 2.190488 CTGGGGAGGTGAGCCAAGAC 62.190 65.000 0.00 0.00 37.19 3.01
28 29 1.920325 CTGGGGAGGTGAGCCAAGA 60.920 63.158 0.00 0.00 37.19 3.02
29 30 2.673523 CTGGGGAGGTGAGCCAAG 59.326 66.667 0.00 0.00 37.19 3.61
30 31 3.650950 GCTGGGGAGGTGAGCCAA 61.651 66.667 0.00 0.00 37.19 4.52
31 32 4.664267 AGCTGGGGAGGTGAGCCA 62.664 66.667 0.00 0.00 37.19 4.75
32 33 3.791586 GAGCTGGGGAGGTGAGCC 61.792 72.222 0.00 0.00 32.86 4.70
33 34 2.533974 CTTGAGCTGGGGAGGTGAGC 62.534 65.000 0.00 0.00 0.00 4.26
34 35 1.197430 ACTTGAGCTGGGGAGGTGAG 61.197 60.000 0.00 0.00 0.00 3.51
35 36 1.152030 ACTTGAGCTGGGGAGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
36 37 1.002868 CACTTGAGCTGGGGAGGTG 60.003 63.158 0.00 0.00 0.00 4.00
37 38 0.548682 ATCACTTGAGCTGGGGAGGT 60.549 55.000 0.00 0.00 0.00 3.85
38 39 0.107312 CATCACTTGAGCTGGGGAGG 60.107 60.000 0.00 0.00 0.00 4.30
39 40 0.907486 TCATCACTTGAGCTGGGGAG 59.093 55.000 0.00 0.00 0.00 4.30
40 41 1.588239 ATCATCACTTGAGCTGGGGA 58.412 50.000 0.00 0.00 37.89 4.81
41 42 2.022195 CAATCATCACTTGAGCTGGGG 58.978 52.381 0.00 0.00 37.89 4.96
42 43 2.995283 TCAATCATCACTTGAGCTGGG 58.005 47.619 0.00 0.00 37.89 4.45
43 44 6.688637 TTAATCAATCATCACTTGAGCTGG 57.311 37.500 0.00 0.00 37.89 4.85
59 60 9.621629 TCTCCTCGGCTTTATTTAATTAATCAA 57.378 29.630 0.00 0.00 0.00 2.57
60 61 9.621629 TTCTCCTCGGCTTTATTTAATTAATCA 57.378 29.630 0.00 0.00 0.00 2.57
63 64 8.899771 CCTTTCTCCTCGGCTTTATTTAATTAA 58.100 33.333 0.00 0.00 0.00 1.40
64 65 7.501225 CCCTTTCTCCTCGGCTTTATTTAATTA 59.499 37.037 0.00 0.00 0.00 1.40
65 66 6.321435 CCCTTTCTCCTCGGCTTTATTTAATT 59.679 38.462 0.00 0.00 0.00 1.40
66 67 5.828328 CCCTTTCTCCTCGGCTTTATTTAAT 59.172 40.000 0.00 0.00 0.00 1.40
67 68 5.045432 TCCCTTTCTCCTCGGCTTTATTTAA 60.045 40.000 0.00 0.00 0.00 1.52
68 69 4.472108 TCCCTTTCTCCTCGGCTTTATTTA 59.528 41.667 0.00 0.00 0.00 1.40
69 70 3.265995 TCCCTTTCTCCTCGGCTTTATTT 59.734 43.478 0.00 0.00 0.00 1.40
70 71 2.844348 TCCCTTTCTCCTCGGCTTTATT 59.156 45.455 0.00 0.00 0.00 1.40
71 72 2.436173 CTCCCTTTCTCCTCGGCTTTAT 59.564 50.000 0.00 0.00 0.00 1.40
72 73 1.831736 CTCCCTTTCTCCTCGGCTTTA 59.168 52.381 0.00 0.00 0.00 1.85
73 74 0.615850 CTCCCTTTCTCCTCGGCTTT 59.384 55.000 0.00 0.00 0.00 3.51
74 75 1.268283 CCTCCCTTTCTCCTCGGCTT 61.268 60.000 0.00 0.00 0.00 4.35
75 76 1.687493 CCTCCCTTTCTCCTCGGCT 60.687 63.158 0.00 0.00 0.00 5.52
76 77 2.904131 CCTCCCTTTCTCCTCGGC 59.096 66.667 0.00 0.00 0.00 5.54
77 78 1.990060 TGCCTCCCTTTCTCCTCGG 60.990 63.158 0.00 0.00 0.00 4.63
78 79 1.219393 GTGCCTCCCTTTCTCCTCG 59.781 63.158 0.00 0.00 0.00 4.63
79 80 1.219393 CGTGCCTCCCTTTCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
80 81 1.536662 ACGTGCCTCCCTTTCTCCT 60.537 57.895 0.00 0.00 0.00 3.69
81 82 1.376037 CACGTGCCTCCCTTTCTCC 60.376 63.158 0.82 0.00 0.00 3.71
82 83 0.951040 CACACGTGCCTCCCTTTCTC 60.951 60.000 17.22 0.00 0.00 2.87
83 84 1.071471 CACACGTGCCTCCCTTTCT 59.929 57.895 17.22 0.00 0.00 2.52
84 85 1.966451 CCACACGTGCCTCCCTTTC 60.966 63.158 17.22 0.00 0.00 2.62
85 86 2.113139 CCACACGTGCCTCCCTTT 59.887 61.111 17.22 0.00 0.00 3.11
86 87 4.643387 GCCACACGTGCCTCCCTT 62.643 66.667 17.22 0.00 0.00 3.95
111 112 1.126846 GCTTGTCAAATCCGTCAGTCG 59.873 52.381 0.00 0.00 39.52 4.18
165 178 0.688418 TAATCGATCCACCCACCGGT 60.688 55.000 0.00 0.00 46.31 5.28
170 183 0.688418 ACCGGTAATCGATCCACCCA 60.688 55.000 4.49 0.00 42.43 4.51
171 184 0.249741 CACCGGTAATCGATCCACCC 60.250 60.000 6.87 7.71 42.43 4.61
174 187 1.066752 CGCACCGGTAATCGATCCA 59.933 57.895 6.87 0.00 42.43 3.41
175 188 1.663702 CCGCACCGGTAATCGATCC 60.664 63.158 20.21 0.00 42.73 3.36
176 189 3.932289 CCGCACCGGTAATCGATC 58.068 61.111 20.21 0.00 42.73 3.69
211 233 0.307760 CTCATTAATGGGCCGCGTTC 59.692 55.000 15.36 0.00 0.00 3.95
212 234 2.404083 CTCATTAATGGGCCGCGTT 58.596 52.632 15.36 0.00 0.00 4.84
213 235 4.141144 CTCATTAATGGGCCGCGT 57.859 55.556 15.36 0.00 0.00 6.01
250 276 2.284995 GGGAGGAGGGCAGAGTGT 60.285 66.667 0.00 0.00 0.00 3.55
252 278 3.966930 GACGGGAGGAGGGCAGAGT 62.967 68.421 0.00 0.00 0.00 3.24
254 280 3.663815 GAGACGGGAGGAGGGCAGA 62.664 68.421 0.00 0.00 0.00 4.26
256 282 4.779733 GGAGACGGGAGGAGGGCA 62.780 72.222 0.00 0.00 0.00 5.36
259 285 2.123640 GAGGGAGACGGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
262 288 4.824515 AGCGAGGGAGACGGGAGG 62.825 72.222 0.00 0.00 0.00 4.30
263 289 3.213402 GAGCGAGGGAGACGGGAG 61.213 72.222 0.00 0.00 0.00 4.30
267 293 2.470362 TTAGCGAGCGAGGGAGACG 61.470 63.158 0.00 0.00 0.00 4.18
268 294 1.064458 GTTAGCGAGCGAGGGAGAC 59.936 63.158 0.00 0.00 0.00 3.36
269 295 2.119655 GGTTAGCGAGCGAGGGAGA 61.120 63.158 0.00 0.00 0.00 3.71
270 296 2.413765 GGTTAGCGAGCGAGGGAG 59.586 66.667 0.00 0.00 0.00 4.30
271 297 3.145551 GGGTTAGCGAGCGAGGGA 61.146 66.667 0.00 0.00 0.00 4.20
272 298 4.222847 GGGGTTAGCGAGCGAGGG 62.223 72.222 0.00 0.00 0.00 4.30
273 299 4.222847 GGGGGTTAGCGAGCGAGG 62.223 72.222 0.00 0.00 0.00 4.63
274 300 4.570663 CGGGGGTTAGCGAGCGAG 62.571 72.222 0.00 0.00 0.00 5.03
277 303 4.893601 GAGCGGGGGTTAGCGAGC 62.894 72.222 0.00 0.00 38.61 5.03
281 307 4.858680 GCTGGAGCGGGGGTTAGC 62.859 72.222 0.00 0.00 0.00 3.09
303 329 1.690985 GAGGGAGGGGAGTGGGAAG 60.691 68.421 0.00 0.00 0.00 3.46
304 330 2.454941 GAGGGAGGGGAGTGGGAA 59.545 66.667 0.00 0.00 0.00 3.97
308 334 3.465403 CGCTGAGGGAGGGGAGTG 61.465 72.222 0.00 0.00 0.00 3.51
337 368 0.616371 TTGCAGTAGTACCCGGCAAT 59.384 50.000 16.27 0.00 39.33 3.56
338 369 0.320946 GTTGCAGTAGTACCCGGCAA 60.321 55.000 16.27 16.27 41.67 4.52
339 370 1.294138 GTTGCAGTAGTACCCGGCA 59.706 57.895 0.00 7.56 0.00 5.69
340 371 1.017701 GTGTTGCAGTAGTACCCGGC 61.018 60.000 0.00 0.00 0.00 6.13
341 372 0.606604 AGTGTTGCAGTAGTACCCGG 59.393 55.000 0.00 0.00 0.00 5.73
342 373 1.403780 GGAGTGTTGCAGTAGTACCCG 60.404 57.143 0.00 0.00 0.00 5.28
343 374 1.900486 AGGAGTGTTGCAGTAGTACCC 59.100 52.381 0.00 0.00 0.00 3.69
345 376 3.444388 AGCTAGGAGTGTTGCAGTAGTAC 59.556 47.826 0.00 0.00 0.00 2.73
346 377 3.444034 CAGCTAGGAGTGTTGCAGTAGTA 59.556 47.826 0.00 0.00 0.00 1.82
348 379 2.886081 CAGCTAGGAGTGTTGCAGTAG 58.114 52.381 0.00 0.00 0.00 2.57
349 380 1.066858 GCAGCTAGGAGTGTTGCAGTA 60.067 52.381 0.00 0.00 34.99 2.74
358 395 2.096248 GTGTCTGTAGCAGCTAGGAGT 58.904 52.381 1.02 0.00 0.00 3.85
375 412 2.100879 GAAGAGTGGAGGTGCCGTGT 62.101 60.000 0.00 0.00 40.66 4.49
388 425 1.882989 GCGTGCTGGAGGAGAAGAGT 61.883 60.000 0.00 0.00 0.00 3.24
422 459 4.593864 GATCGGTGGAGGCTCGGC 62.594 72.222 8.69 3.37 0.00 5.54
424 461 4.933064 GCGATCGGTGGAGGCTCG 62.933 72.222 18.30 0.00 0.00 5.03
425 462 3.082579 AAGCGATCGGTGGAGGCTC 62.083 63.158 22.01 5.78 35.55 4.70
426 463 3.077556 AAGCGATCGGTGGAGGCT 61.078 61.111 22.01 1.40 37.45 4.58
427 464 2.892425 CAAGCGATCGGTGGAGGC 60.892 66.667 22.01 0.00 0.00 4.70
429 466 1.424493 GAAGCAAGCGATCGGTGGAG 61.424 60.000 25.30 16.48 0.00 3.86
430 467 1.447838 GAAGCAAGCGATCGGTGGA 60.448 57.895 25.30 0.00 0.00 4.02
431 468 2.464459 GGAAGCAAGCGATCGGTGG 61.464 63.158 22.01 19.57 0.00 4.61
433 470 1.448540 CAGGAAGCAAGCGATCGGT 60.449 57.895 15.21 15.21 0.00 4.69
435 472 2.817423 GCCAGGAAGCAAGCGATCG 61.817 63.158 11.69 11.69 0.00 3.69
436 473 2.476320 GGCCAGGAAGCAAGCGATC 61.476 63.158 0.00 0.00 0.00 3.69
437 474 2.439156 GGCCAGGAAGCAAGCGAT 60.439 61.111 0.00 0.00 0.00 4.58
540 600 2.671070 CCGTGCCAAGGGTGAGAT 59.329 61.111 0.00 0.00 0.00 2.75
714 813 4.241555 CGGCGAGGGGAGGGAATG 62.242 72.222 0.00 0.00 0.00 2.67
759 866 1.894756 CCCCGAAACGGCAAAGTGA 60.895 57.895 4.57 0.00 46.86 3.41
892 1300 4.037446 CCTACGGAAAGGAGAGAGAGATTG 59.963 50.000 0.00 0.00 39.15 2.67
893 1301 4.211920 CCTACGGAAAGGAGAGAGAGATT 58.788 47.826 0.00 0.00 39.15 2.40
894 1302 3.203487 ACCTACGGAAAGGAGAGAGAGAT 59.797 47.826 7.63 0.00 39.15 2.75
895 1303 2.577105 ACCTACGGAAAGGAGAGAGAGA 59.423 50.000 7.63 0.00 39.15 3.10
897 1305 4.581309 TTACCTACGGAAAGGAGAGAGA 57.419 45.455 7.63 0.00 39.15 3.10
899 1307 4.648307 GGATTTACCTACGGAAAGGAGAGA 59.352 45.833 7.63 0.00 39.15 3.10
900 1308 4.404715 TGGATTTACCTACGGAAAGGAGAG 59.595 45.833 7.63 0.00 39.15 3.20
902 1310 4.748277 TGGATTTACCTACGGAAAGGAG 57.252 45.455 7.63 0.00 39.15 3.69
904 1312 4.141574 TGGATGGATTTACCTACGGAAAGG 60.142 45.833 0.00 0.00 42.82 3.11
905 1313 5.031066 TGGATGGATTTACCTACGGAAAG 57.969 43.478 0.00 0.00 39.86 2.62
906 1314 5.438698 TTGGATGGATTTACCTACGGAAA 57.561 39.130 0.00 0.00 39.86 3.13
907 1315 5.438698 TTTGGATGGATTTACCTACGGAA 57.561 39.130 0.00 0.00 39.86 4.30
989 1408 1.838112 TTCATTCATGGAGTGGTGCC 58.162 50.000 0.00 0.00 0.00 5.01
993 1413 5.067954 TGATAGCATTCATTCATGGAGTGG 58.932 41.667 0.00 0.00 0.00 4.00
996 1416 9.788960 CAATTATGATAGCATTCATTCATGGAG 57.211 33.333 0.00 0.00 37.51 3.86
1016 1436 1.102978 GCGGAGGTTGTGGCAATTAT 58.897 50.000 0.00 0.00 0.00 1.28
1026 1446 1.889105 CATGGATCGGCGGAGGTTG 60.889 63.158 7.21 0.00 0.00 3.77
1071 1517 3.358076 GAGGACGCGGGAGGTCAAG 62.358 68.421 12.47 0.00 36.12 3.02
1072 1518 3.379445 GAGGACGCGGGAGGTCAA 61.379 66.667 12.47 0.00 36.12 3.18
1073 1519 3.881019 AAGAGGACGCGGGAGGTCA 62.881 63.158 12.47 0.00 36.12 4.02
1074 1520 3.066233 GAAGAGGACGCGGGAGGTC 62.066 68.421 12.47 0.00 0.00 3.85
1110 1562 3.146066 TGGTGGTGTTGTTATTCTCTGC 58.854 45.455 0.00 0.00 0.00 4.26
1267 1736 7.999679 TCAGGCTAAAAATAGTGGATTGATTG 58.000 34.615 0.00 0.00 0.00 2.67
1715 2232 0.180642 CACTGGAGCTCATCATGGCT 59.819 55.000 17.19 0.64 41.88 4.75
1791 2308 2.829458 GACGACGAGGAGGGAGGG 60.829 72.222 0.00 0.00 0.00 4.30
1792 2309 3.203412 CGACGACGAGGAGGGAGG 61.203 72.222 0.00 0.00 42.66 4.30
1793 2310 2.125229 TCGACGACGAGGAGGGAG 60.125 66.667 5.75 0.00 43.81 4.30
1882 2400 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1884 2402 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1885 2403 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1886 2404 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1887 2405 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1888 2406 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1889 2407 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1890 2408 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1891 2409 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1892 2410 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1893 2411 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1894 2412 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1895 2413 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1896 2414 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1897 2415 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1898 2416 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1899 2417 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1900 2418 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1901 2419 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1902 2420 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1903 2421 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
1904 2422 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1905 2423 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1906 2424 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1907 2425 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
1908 2426 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
1909 2427 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1910 2428 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
1911 2429 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1912 2430 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
1922 2440 3.222126 AATCGTGTGTGCGTGCGTG 62.222 57.895 0.00 0.00 0.00 5.34
1923 2441 2.938823 GAATCGTGTGTGCGTGCGT 61.939 57.895 0.00 0.00 0.00 5.24
1924 2442 2.202046 GAATCGTGTGTGCGTGCG 60.202 61.111 0.00 0.00 0.00 5.34
1925 2443 0.316607 TTTGAATCGTGTGTGCGTGC 60.317 50.000 0.00 0.00 0.00 5.34
1926 2444 1.772966 GTTTTGAATCGTGTGTGCGTG 59.227 47.619 0.00 0.00 0.00 5.34
1927 2445 1.398739 TGTTTTGAATCGTGTGTGCGT 59.601 42.857 0.00 0.00 0.00 5.24
1928 2446 2.098215 TGTTTTGAATCGTGTGTGCG 57.902 45.000 0.00 0.00 0.00 5.34
1929 2447 5.388225 AAAATGTTTTGAATCGTGTGTGC 57.612 34.783 0.00 0.00 0.00 4.57
1953 2471 4.686091 GCAGCTAGGTTTGGTTTTGAAATC 59.314 41.667 0.00 0.00 0.00 2.17
1968 2487 0.531532 CCGGATGAACAGCAGCTAGG 60.532 60.000 0.00 0.00 32.29 3.02
1971 2490 1.376424 CACCGGATGAACAGCAGCT 60.376 57.895 9.46 0.00 32.29 4.24
1986 2505 4.872552 TTCAAAATCTGAAGCAGGGCACC 61.873 47.826 0.00 0.00 44.50 5.01
2012 2531 3.074412 AGGTACGCACAAGGAAAGATTG 58.926 45.455 0.00 0.00 0.00 2.67
2014 2533 4.755266 ATAGGTACGCACAAGGAAAGAT 57.245 40.909 0.00 0.00 0.00 2.40
2015 2534 4.142093 GGTATAGGTACGCACAAGGAAAGA 60.142 45.833 0.00 0.00 0.00 2.52
2016 2535 4.117685 GGTATAGGTACGCACAAGGAAAG 58.882 47.826 0.00 0.00 0.00 2.62
2019 2538 3.022557 AGGTATAGGTACGCACAAGGA 57.977 47.619 0.00 0.00 0.00 3.36
2021 2540 3.304257 CGGTAGGTATAGGTACGCACAAG 60.304 52.174 0.00 0.00 0.00 3.16
2023 2542 2.221169 CGGTAGGTATAGGTACGCACA 58.779 52.381 0.00 0.00 0.00 4.57
2049 2573 2.625823 AACCACGGCCTTCAATGCG 61.626 57.895 0.00 0.00 0.00 4.73
2063 2587 2.156098 GAGGACGGCATTTAACAACCA 58.844 47.619 0.00 0.00 0.00 3.67
2096 2620 1.773856 GCTTCCTATCCTGAGCCCCC 61.774 65.000 0.00 0.00 0.00 5.40
2275 2811 6.287589 AGCAGCAGAAAATGTAGTAGTAGT 57.712 37.500 0.00 0.00 0.00 2.73
2278 2814 6.712547 AGAAAAGCAGCAGAAAATGTAGTAGT 59.287 34.615 0.00 0.00 0.00 2.73
2279 2815 7.020010 CAGAAAAGCAGCAGAAAATGTAGTAG 58.980 38.462 0.00 0.00 0.00 2.57
2281 2817 5.766222 CAGAAAAGCAGCAGAAAATGTAGT 58.234 37.500 0.00 0.00 0.00 2.73
2282 2818 4.620184 GCAGAAAAGCAGCAGAAAATGTAG 59.380 41.667 0.00 0.00 0.00 2.74
2283 2819 4.279169 AGCAGAAAAGCAGCAGAAAATGTA 59.721 37.500 0.00 0.00 36.85 2.29
2284 2820 3.069158 AGCAGAAAAGCAGCAGAAAATGT 59.931 39.130 0.00 0.00 36.85 2.71
2285 2821 3.650139 AGCAGAAAAGCAGCAGAAAATG 58.350 40.909 0.00 0.00 36.85 2.32
2286 2822 4.304939 GAAGCAGAAAAGCAGCAGAAAAT 58.695 39.130 0.00 0.00 36.85 1.82
2287 2823 3.491447 GGAAGCAGAAAAGCAGCAGAAAA 60.491 43.478 0.00 0.00 36.85 2.29
2288 2824 2.035066 GGAAGCAGAAAAGCAGCAGAAA 59.965 45.455 0.00 0.00 36.85 2.52
2289 2825 1.610522 GGAAGCAGAAAAGCAGCAGAA 59.389 47.619 0.00 0.00 36.85 3.02
2290 2826 1.202855 AGGAAGCAGAAAAGCAGCAGA 60.203 47.619 0.00 0.00 36.85 4.26
2291 2827 1.068472 CAGGAAGCAGAAAAGCAGCAG 60.068 52.381 0.00 0.00 36.85 4.24
2319 2855 1.227380 CCGAGAAGGAGAATGCCGG 60.227 63.158 0.00 0.00 45.00 6.13
2332 2868 1.656998 GCATCAGAGATCGCCGAGA 59.343 57.895 0.00 0.00 0.00 4.04
2333 2869 1.728778 CGCATCAGAGATCGCCGAG 60.729 63.158 0.00 0.00 0.00 4.63
2334 2870 1.518903 ATCGCATCAGAGATCGCCGA 61.519 55.000 0.00 0.00 26.97 5.54
2336 2872 1.506493 AAATCGCATCAGAGATCGCC 58.494 50.000 0.00 0.00 32.81 5.54
2337 2873 2.410053 GGTAAATCGCATCAGAGATCGC 59.590 50.000 0.00 0.00 32.81 4.58
2359 2895 0.312102 GAGAAACTGCAAGGCACACC 59.688 55.000 0.00 0.00 39.30 4.16
2395 2931 0.742281 CCATCTTGAGACCACCGCTG 60.742 60.000 0.00 0.00 0.00 5.18
2402 2938 0.539986 TTACCCGCCATCTTGAGACC 59.460 55.000 0.00 0.00 0.00 3.85
2405 2941 2.158900 ACTGATTACCCGCCATCTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
2417 2953 2.232941 TGTGACTCGGGAACTGATTACC 59.767 50.000 0.00 0.00 45.89 2.85
2428 2964 1.704641 TATCCTCCATGTGACTCGGG 58.295 55.000 0.00 0.00 0.00 5.14
2432 2968 5.441718 ACATGTTTATCCTCCATGTGACT 57.558 39.130 3.89 0.00 45.43 3.41
2433 2969 6.767902 ACATACATGTTTATCCTCCATGTGAC 59.232 38.462 2.30 0.00 46.30 3.67
2437 2973 7.662669 TCATCACATACATGTTTATCCTCCATG 59.337 37.037 2.30 0.37 39.39 3.66
2443 2979 6.207221 TGGCATCATCACATACATGTTTATCC 59.793 38.462 2.30 0.00 39.39 2.59
2505 3041 6.688813 CAGTTAACAAAGCTCAAGTTCAACTC 59.311 38.462 8.61 0.00 0.00 3.01
2510 3046 8.940952 AGATATCAGTTAACAAAGCTCAAGTTC 58.059 33.333 8.61 0.00 0.00 3.01
2511 3047 8.725148 CAGATATCAGTTAACAAAGCTCAAGTT 58.275 33.333 8.61 0.00 0.00 2.66
2512 3048 7.880195 ACAGATATCAGTTAACAAAGCTCAAGT 59.120 33.333 8.61 0.44 0.00 3.16
2513 3049 8.261492 ACAGATATCAGTTAACAAAGCTCAAG 57.739 34.615 8.61 0.00 0.00 3.02
2632 3168 1.442526 CCATGAGCATCTTGACGGGC 61.443 60.000 0.00 0.00 42.34 6.13
2719 3255 1.810030 GGCTGGAGCGTCGTTTAGG 60.810 63.158 0.00 0.00 43.26 2.69
2757 3293 6.261435 TCCTTACTGAACCTTCTTCCTGATA 58.739 40.000 0.00 0.00 0.00 2.15
2800 3336 3.733443 TTGCTTTCCTTCTTTGGCTTC 57.267 42.857 0.00 0.00 0.00 3.86
2846 3382 0.176449 CATGTCTCCTCATGCCGTGA 59.824 55.000 0.00 0.00 38.65 4.35
2908 3444 2.930950 TCCTTTCCTTGGTGTCTGTTG 58.069 47.619 0.00 0.00 0.00 3.33
2935 3471 3.030873 AGGGACATTCTCCTCTCAGAG 57.969 52.381 0.00 0.00 39.39 3.35
2937 3473 2.836981 ACAAGGGACATTCTCCTCTCAG 59.163 50.000 0.00 0.00 39.39 3.35
2959 3495 1.336755 GCTTCAGCAAACTTTTCCCGA 59.663 47.619 0.00 0.00 41.59 5.14
2992 3528 3.022981 GAGAAGCTTCTCGTCCGTG 57.977 57.895 34.29 0.00 43.63 4.94
3028 3564 1.208614 CAGAAACTGCAGCGCTTCC 59.791 57.895 15.27 1.67 0.00 3.46
3207 3743 4.019858 CTCTGAATATAGATGCCTCCCGA 58.980 47.826 0.00 0.00 0.00 5.14
3217 3753 7.290948 TCAGCTTCATTTCCCTCTGAATATAGA 59.709 37.037 0.00 0.00 31.39 1.98
3299 3835 3.315191 ACAATTCTTGTTGGTTCGGACAG 59.685 43.478 0.00 0.00 42.22 3.51
3338 3874 6.697395 TCGTATCTTCATGAGACTTTGGAAA 58.303 36.000 0.00 0.00 37.17 3.13
3377 3913 5.273674 TCTGCCTCTGTTGATGATTCTAG 57.726 43.478 0.00 0.00 0.00 2.43
3496 4032 3.648009 CGAACTATCTTCATCCTGGCTC 58.352 50.000 0.00 0.00 0.00 4.70
3640 4176 2.045340 AAATCCCAGGAACGGCCG 60.045 61.111 26.86 26.86 43.43 6.13
3673 4209 2.928334 CATGATGCAGAGTAAGGGCTT 58.072 47.619 0.00 0.00 0.00 4.35
3706 4242 2.305127 CGGTTCACGTCGGTTGGAC 61.305 63.158 0.00 0.00 42.48 4.02
3804 4340 0.732880 CACACTTCTACGTGCTCCCG 60.733 60.000 0.00 0.00 38.45 5.14
3882 4421 5.698545 GGCGATCTGCTCTCTAATGTTATTT 59.301 40.000 8.94 0.00 45.43 1.40
4001 4540 1.771255 AGCTTCCTGAGAACCAACTGT 59.229 47.619 0.00 0.00 0.00 3.55
4059 4598 3.070748 GAGAACAGGCTGGAAACTCTTC 58.929 50.000 20.34 11.21 0.00 2.87
4096 4635 2.043939 TGGACCTAACTTCTCCCTAGCA 59.956 50.000 0.00 0.00 0.00 3.49
4100 4639 1.437547 AGGTGGACCTAACTTCTCCCT 59.562 52.381 0.00 0.00 46.48 4.20
4157 4696 0.177141 TCACTAATAGCCACGGCACC 59.823 55.000 11.35 0.00 44.88 5.01
4243 4782 0.368227 GTCTTTGCAGAGCATCGTCG 59.632 55.000 0.00 0.00 42.67 5.12
4246 4785 1.718396 TGAGTCTTTGCAGAGCATCG 58.282 50.000 0.00 0.00 42.67 3.84
4401 4960 8.573885 AGTAATTTAACTTGGCCAAAGAAGTAC 58.426 33.333 20.91 20.82 39.38 2.73
4431 4990 4.338118 CACCCTAACAGAACAGAGCAAAAA 59.662 41.667 0.00 0.00 0.00 1.94
4492 5051 1.009389 GTTGGTCTTGAGACTCGCCG 61.009 60.000 10.68 0.00 44.20 6.46
4613 5172 6.150140 AGTTTGATGAGATTGGTTAACAGCTC 59.850 38.462 8.10 6.12 34.68 4.09
4657 5216 6.035220 CACAATGATGAATGCCATTACACAAC 59.965 38.462 0.00 0.00 35.17 3.32
4676 5236 3.434641 ACGATTTCTGCAGAGACACAATG 59.565 43.478 17.43 10.20 0.00 2.82
4677 5237 3.434641 CACGATTTCTGCAGAGACACAAT 59.565 43.478 17.43 13.14 0.00 2.71
4678 5238 2.802247 CACGATTTCTGCAGAGACACAA 59.198 45.455 17.43 8.42 0.00 3.33
4900 5460 3.118261 ACTTCTCAAGCAACTTCAGGTCA 60.118 43.478 0.00 0.00 0.00 4.02
4994 5554 2.486636 TTCGTGAGCGCCTCGTTGAT 62.487 55.000 2.29 0.00 38.14 2.57
5011 5571 1.294659 CCGCTGTCCAAGTGAGCTTC 61.295 60.000 0.00 0.00 38.83 3.86
5012 5572 1.302033 CCGCTGTCCAAGTGAGCTT 60.302 57.895 0.00 0.00 38.83 3.74
5029 5589 1.676006 CATGGGTAAGCGGACAATTCC 59.324 52.381 0.00 0.00 38.77 3.01
5033 5593 1.301623 CCCATGGGTAAGCGGACAA 59.698 57.895 23.93 0.00 0.00 3.18
5083 5643 5.207110 AGTTACAGGAGGAATCATCATCG 57.793 43.478 0.00 0.00 37.24 3.84
5110 5670 1.226945 CCGCCAAATTTCATCGGCC 60.227 57.895 10.70 0.00 41.71 6.13
5164 5724 0.611062 TCTCGATGACTTCACCGGGT 60.611 55.000 6.32 0.00 34.24 5.28
5170 5730 2.808919 AGGTTCCTCTCGATGACTTCA 58.191 47.619 0.00 0.00 0.00 3.02
5245 5805 3.669036 CTCCAGCCGAGTCGTGTCG 62.669 68.421 12.31 0.00 39.77 4.35
5254 5814 1.289066 CTCAAACGTCTCCAGCCGA 59.711 57.895 0.00 0.00 0.00 5.54
5287 5847 1.669115 CTCCAGAACCACCGTGCAG 60.669 63.158 0.00 0.00 0.00 4.41
5300 5860 0.906756 TCCTCAAGCAGGTCCTCCAG 60.907 60.000 0.00 0.00 43.95 3.86
5332 5892 5.284861 TCACTAGGTGCTGTTAGTCAAAA 57.715 39.130 0.00 0.00 32.98 2.44
5364 5924 3.325870 GCAAAAATCAACAGTTAGGGGC 58.674 45.455 0.00 0.00 0.00 5.80
5374 5934 2.247358 TGGGGAGAGGCAAAAATCAAC 58.753 47.619 0.00 0.00 0.00 3.18
5379 5939 1.499007 AGAGTTGGGGAGAGGCAAAAA 59.501 47.619 0.00 0.00 0.00 1.94
5404 5964 1.191425 TCATCACGCGAACAGAAAACG 59.809 47.619 15.93 0.00 0.00 3.60
5406 5966 4.242475 AGTATCATCACGCGAACAGAAAA 58.758 39.130 15.93 0.00 0.00 2.29
5468 6028 2.349275 CACATTTGGCATCGCATTTTCC 59.651 45.455 0.00 0.00 0.00 3.13
5476 6036 0.244450 AAGGCACACATTTGGCATCG 59.756 50.000 0.00 0.00 44.44 3.84
5512 6072 2.615447 TCAGCTAATTACAGCATGCAGC 59.385 45.455 21.98 17.55 44.35 5.25
5514 6074 4.641541 ACAATCAGCTAATTACAGCATGCA 59.358 37.500 21.98 0.00 44.35 3.96
5515 6075 5.179045 ACAATCAGCTAATTACAGCATGC 57.821 39.130 10.51 10.51 44.35 4.06
5516 6076 6.020121 GCAAACAATCAGCTAATTACAGCATG 60.020 38.462 3.15 0.00 44.35 4.06
5555 6132 1.270550 CCTTCAACACTGGCATGGTTC 59.729 52.381 0.00 0.00 0.00 3.62
5563 6140 5.882000 TGATGATGATAACCTTCAACACTGG 59.118 40.000 0.00 0.00 32.18 4.00
5587 6164 9.715121 TTGTGTAGTATTAACGAAGGAAAAGAT 57.285 29.630 0.00 0.00 0.00 2.40
5588 6165 9.199982 CTTGTGTAGTATTAACGAAGGAAAAGA 57.800 33.333 0.00 0.00 0.00 2.52
5624 6201 7.038587 TCAGCTTACTACAGGAGGACAAAATAA 60.039 37.037 0.00 0.00 0.00 1.40
5625 6202 6.439375 TCAGCTTACTACAGGAGGACAAAATA 59.561 38.462 0.00 0.00 0.00 1.40
5650 6227 7.611467 TCATAACTCTAATTCAAGCAACACCAT 59.389 33.333 0.00 0.00 0.00 3.55
5691 6268 9.944663 CTTTTGTACTACTGCATTTGTTTTCTA 57.055 29.630 0.00 0.00 0.00 2.10
5696 6273 7.067008 ACTGTCTTTTGTACTACTGCATTTGTT 59.933 33.333 0.00 0.00 0.00 2.83
5697 6274 6.542370 ACTGTCTTTTGTACTACTGCATTTGT 59.458 34.615 0.00 0.00 0.00 2.83
5702 6279 6.575267 TGTTACTGTCTTTTGTACTACTGCA 58.425 36.000 0.00 0.00 0.00 4.41
5703 6280 7.653767 ATGTTACTGTCTTTTGTACTACTGC 57.346 36.000 0.00 0.00 0.00 4.40
5733 6320 5.009631 TCCTATTGGACCACACAAAATCAG 58.990 41.667 0.00 0.00 37.46 2.90
5757 6344 7.725844 TCAGATCATGGCTTCTACTGACTTATA 59.274 37.037 0.00 0.00 0.00 0.98
5758 6345 6.552725 TCAGATCATGGCTTCTACTGACTTAT 59.447 38.462 0.00 0.00 0.00 1.73
5766 6353 4.613925 TGGATCAGATCATGGCTTCTAC 57.386 45.455 12.66 0.00 0.00 2.59
5788 6375 2.094675 GCTGCTTCTTTTGATGCCCTA 58.905 47.619 0.00 0.00 45.59 3.53
5839 6426 6.016276 ACAGTTGACATGGATCCTAACAAAAC 60.016 38.462 14.23 10.37 0.00 2.43
5846 6433 5.189539 TGAATCACAGTTGACATGGATCCTA 59.810 40.000 14.23 0.00 33.38 2.94
5907 6494 1.198759 TGCTCTAGTGGGGTGGTTCC 61.199 60.000 0.00 0.00 0.00 3.62
5908 6495 0.690762 TTGCTCTAGTGGGGTGGTTC 59.309 55.000 0.00 0.00 0.00 3.62
5931 6534 3.329386 CTTGCTGCTGCTAAGACAGTTA 58.671 45.455 17.00 0.00 39.96 2.24
5933 6536 1.610102 CCTTGCTGCTGCTAAGACAGT 60.610 52.381 17.00 0.00 39.96 3.55
5934 6537 1.085091 CCTTGCTGCTGCTAAGACAG 58.915 55.000 17.00 3.44 40.80 3.51
5937 6540 1.377725 GGCCTTGCTGCTGCTAAGA 60.378 57.895 17.00 0.00 40.48 2.10
5939 6542 0.612732 ATTGGCCTTGCTGCTGCTAA 60.613 50.000 17.00 5.96 40.48 3.09
5940 6543 1.000521 ATTGGCCTTGCTGCTGCTA 60.001 52.632 17.00 8.35 40.48 3.49
5941 6544 2.283676 ATTGGCCTTGCTGCTGCT 60.284 55.556 17.00 0.00 40.48 4.24
5942 6545 2.125673 CATTGGCCTTGCTGCTGC 60.126 61.111 8.89 8.89 40.20 5.25
5943 6546 2.280552 ACCATTGGCCTTGCTGCTG 61.281 57.895 3.32 0.00 0.00 4.41
6027 6640 1.280982 AATATGCCGATATCGCAGCG 58.719 50.000 19.78 9.06 38.18 5.18
6028 6641 2.223112 CCAAATATGCCGATATCGCAGC 60.223 50.000 19.78 17.92 38.18 5.25
6029 6642 2.352651 CCCAAATATGCCGATATCGCAG 59.647 50.000 19.78 8.25 38.18 5.18
6030 6643 2.355197 CCCAAATATGCCGATATCGCA 58.645 47.619 19.78 19.61 38.18 5.10
6031 6644 1.670811 CCCCAAATATGCCGATATCGC 59.329 52.381 19.78 14.85 38.18 4.58
6053 6666 5.365025 TCATGTGGTTTTGATTTTCTGGGAA 59.635 36.000 0.00 0.00 0.00 3.97
6056 6669 6.088016 TCTCATGTGGTTTTGATTTTCTGG 57.912 37.500 0.00 0.00 0.00 3.86
6065 6678 2.756760 CCTCCCATCTCATGTGGTTTTG 59.243 50.000 0.61 0.00 34.87 2.44
6069 6682 1.971149 TTCCTCCCATCTCATGTGGT 58.029 50.000 0.61 0.00 34.87 4.16
6082 6695 5.612725 ACTCAAGATCAAGAGATTCCTCC 57.387 43.478 18.00 0.00 40.30 4.30
6112 6725 6.360370 TTGGCAACTTTGATACTCTACTCT 57.640 37.500 0.00 0.00 37.61 3.24
6113 6726 6.037610 CCATTGGCAACTTTGATACTCTACTC 59.962 42.308 0.00 0.00 37.61 2.59
6152 6765 1.301716 GCGGTTCCAGCTTCAGTCA 60.302 57.895 0.00 0.00 0.00 3.41
6153 6766 2.383527 CGCGGTTCCAGCTTCAGTC 61.384 63.158 0.00 0.00 0.00 3.51
6169 6782 1.008361 AAATGCATGTTTGACGCCGC 61.008 50.000 0.00 0.00 0.00 6.53
6208 6821 5.940617 AGTAATATAAGCTGGGATTGCACA 58.059 37.500 0.00 0.00 0.00 4.57
6214 6827 6.501805 TCACATGGAGTAATATAAGCTGGGAT 59.498 38.462 0.00 0.00 0.00 3.85
6230 6843 4.323792 GGTATGGATATGGGTCACATGGAG 60.324 50.000 0.00 0.00 40.82 3.86
6231 6844 3.587061 GGTATGGATATGGGTCACATGGA 59.413 47.826 0.00 0.00 40.82 3.41
6233 6846 4.582869 CAGGTATGGATATGGGTCACATG 58.417 47.826 0.00 0.00 40.82 3.21
6249 6862 3.523157 TCCACACATGAATGACCAGGTAT 59.477 43.478 0.00 0.00 29.23 2.73
6250 6863 2.909662 TCCACACATGAATGACCAGGTA 59.090 45.455 0.00 0.00 29.23 3.08
6252 6865 2.086869 GTCCACACATGAATGACCAGG 58.913 52.381 0.00 0.00 0.00 4.45
6253 6866 3.063510 AGTCCACACATGAATGACCAG 57.936 47.619 0.00 0.00 0.00 4.00
6254 6867 3.582647 ACTAGTCCACACATGAATGACCA 59.417 43.478 0.00 0.00 0.00 4.02
6255 6868 4.207891 ACTAGTCCACACATGAATGACC 57.792 45.455 0.00 0.00 0.00 4.02
6256 6869 5.967088 ACTACTAGTCCACACATGAATGAC 58.033 41.667 0.00 0.45 0.00 3.06
6305 6983 3.259314 ACATGTGGGCCCTGCTGA 61.259 61.111 25.70 0.00 0.00 4.26
6308 6986 2.753043 CTGACATGTGGGCCCTGC 60.753 66.667 25.70 16.63 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.