Multiple sequence alignment - TraesCS6B01G427300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G427300 chr6B 100.000 2690 0 0 1 2690 696016855 696014166 0.000000e+00 4968.0
1 TraesCS6B01G427300 chr6B 85.232 711 96 5 977 1686 696079865 696080567 0.000000e+00 723.0
2 TraesCS6B01G427300 chr6B 83.069 567 84 8 1138 1692 696099803 696099237 3.090000e-139 505.0
3 TraesCS6B01G427300 chr6B 89.349 169 14 4 1 167 532268093 532268259 2.710000e-50 209.0
4 TraesCS6B01G427300 chr6B 87.059 170 17 5 1 167 692093672 692093839 1.270000e-43 187.0
5 TraesCS6B01G427300 chr6D 94.267 1343 62 10 788 2129 457585673 457584345 0.000000e+00 2039.0
6 TraesCS6B01G427300 chr6D 84.249 819 112 12 874 1688 457629929 457630734 0.000000e+00 782.0
7 TraesCS6B01G427300 chr6D 94.530 457 25 0 2142 2598 457584360 457583904 0.000000e+00 706.0
8 TraesCS6B01G427300 chr6D 84.220 564 83 3 1119 1676 457593075 457592512 6.550000e-151 544.0
9 TraesCS6B01G427300 chr6D 90.208 337 22 3 162 488 457588039 457587704 1.910000e-116 429.0
10 TraesCS6B01G427300 chr6D 85.714 245 31 4 486 727 144464729 144464972 3.440000e-64 255.0
11 TraesCS6B01G427300 chr6A 92.606 1082 70 6 860 1939 604446484 604445411 0.000000e+00 1546.0
12 TraesCS6B01G427300 chr6A 92.740 551 36 4 2142 2690 604445283 604444735 0.000000e+00 793.0
13 TraesCS6B01G427300 chr6A 84.140 826 109 12 876 1688 604537376 604538192 0.000000e+00 780.0
14 TraesCS6B01G427300 chr6A 83.511 564 84 4 1138 1692 604573547 604572984 3.970000e-143 518.0
15 TraesCS6B01G427300 chr6A 81.947 565 91 6 1138 1692 604455781 604455218 4.060000e-128 468.0
16 TraesCS6B01G427300 chr6A 86.857 175 12 3 162 325 604453200 604453026 4.570000e-43 185.0
17 TraesCS6B01G427300 chr6A 91.129 124 6 4 2005 2128 604445387 604445269 2.140000e-36 163.0
18 TraesCS6B01G427300 chr6A 92.683 41 3 0 1939 1979 34179547 34179587 2.890000e-05 60.2
19 TraesCS6B01G427300 chr1A 87.045 247 28 4 487 730 574541840 574541595 2.640000e-70 276.0
20 TraesCS6B01G427300 chr5A 85.366 246 29 6 486 727 676322826 676322584 5.750000e-62 248.0
21 TraesCS6B01G427300 chr5B 93.452 168 8 3 1 166 112556792 112556626 2.070000e-61 246.0
22 TraesCS6B01G427300 chr5B 88.690 168 14 5 1 165 469486737 469486902 1.630000e-47 200.0
23 TraesCS6B01G427300 chr4B 84.898 245 32 5 489 730 651977148 651976906 2.680000e-60 243.0
24 TraesCS6B01G427300 chr1B 84.127 252 37 3 487 736 101470793 101470543 9.620000e-60 241.0
25 TraesCS6B01G427300 chr1B 86.667 165 19 3 2 164 69835968 69836131 2.130000e-41 180.0
26 TraesCS6B01G427300 chr3B 92.771 166 11 1 1 165 228734108 228734273 3.460000e-59 239.0
27 TraesCS6B01G427300 chr3B 84.711 242 33 4 487 726 498732823 498733062 3.460000e-59 239.0
28 TraesCS6B01G427300 chr3B 87.574 169 16 5 2 166 71157236 71157403 9.830000e-45 191.0
29 TraesCS6B01G427300 chr3B 87.952 166 15 5 1 164 693472676 693472514 9.830000e-45 191.0
30 TraesCS6B01G427300 chr3B 92.683 41 3 0 1940 1980 476291420 476291460 2.890000e-05 60.2
31 TraesCS6B01G427300 chr3A 83.858 254 37 4 479 730 301142858 301142607 3.460000e-59 239.0
32 TraesCS6B01G427300 chr3A 95.000 40 1 1 1931 1970 510299873 510299835 8.040000e-06 62.1
33 TraesCS6B01G427300 chr3A 92.683 41 3 0 1940 1980 487459486 487459526 2.890000e-05 60.2
34 TraesCS6B01G427300 chr7B 82.661 248 40 3 482 727 431680241 431680487 1.620000e-52 217.0
35 TraesCS6B01G427300 chr7B 100.000 28 0 0 299 326 611613001 611612974 5.000000e-03 52.8
36 TraesCS6B01G427300 chr3D 82.927 246 37 5 485 727 154542926 154542683 1.620000e-52 217.0
37 TraesCS6B01G427300 chr3D 92.500 40 3 0 1940 1979 370110023 370110062 1.040000e-04 58.4
38 TraesCS6B01G427300 chr3D 94.444 36 2 0 1940 1975 365789789 365789824 3.740000e-04 56.5
39 TraesCS6B01G427300 chr2B 90.361 166 14 2 2 166 65467015 65466851 1.620000e-52 217.0
40 TraesCS6B01G427300 chr7D 97.059 34 1 0 1938 1971 571471709 571471676 1.040000e-04 58.4
41 TraesCS6B01G427300 chr7A 90.244 41 4 0 1931 1971 716231996 716231956 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G427300 chr6B 696014166 696016855 2689 True 4968.0 4968 100.000000 1 2690 1 chr6B.!!$R1 2689
1 TraesCS6B01G427300 chr6B 696079865 696080567 702 False 723.0 723 85.232000 977 1686 1 chr6B.!!$F3 709
2 TraesCS6B01G427300 chr6B 696099237 696099803 566 True 505.0 505 83.069000 1138 1692 1 chr6B.!!$R2 554
3 TraesCS6B01G427300 chr6D 457583904 457588039 4135 True 1058.0 2039 93.001667 162 2598 3 chr6D.!!$R2 2436
4 TraesCS6B01G427300 chr6D 457629929 457630734 805 False 782.0 782 84.249000 874 1688 1 chr6D.!!$F2 814
5 TraesCS6B01G427300 chr6D 457592512 457593075 563 True 544.0 544 84.220000 1119 1676 1 chr6D.!!$R1 557
6 TraesCS6B01G427300 chr6A 604444735 604446484 1749 True 834.0 1546 92.158333 860 2690 3 chr6A.!!$R2 1830
7 TraesCS6B01G427300 chr6A 604537376 604538192 816 False 780.0 780 84.140000 876 1688 1 chr6A.!!$F2 812
8 TraesCS6B01G427300 chr6A 604572984 604573547 563 True 518.0 518 83.511000 1138 1692 1 chr6A.!!$R1 554
9 TraesCS6B01G427300 chr6A 604453026 604455781 2755 True 326.5 468 84.402000 162 1692 2 chr6A.!!$R3 1530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 704 0.035056 AAAGTTGGATCTGGGGAGCG 60.035 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 4223 0.533491 TGTCGTACCGAAATCAGGGG 59.467 55.0 0.0 0.0 37.72 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.463499 GCCTTCATTGTGTTTTCGTTTTT 57.537 34.783 0.00 0.00 0.00 1.94
23 24 5.254842 GCCTTCATTGTGTTTTCGTTTTTG 58.745 37.500 0.00 0.00 0.00 2.44
24 25 5.254842 CCTTCATTGTGTTTTCGTTTTTGC 58.745 37.500 0.00 0.00 0.00 3.68
25 26 4.849111 TCATTGTGTTTTCGTTTTTGCC 57.151 36.364 0.00 0.00 0.00 4.52
26 27 3.619038 TCATTGTGTTTTCGTTTTTGCCC 59.381 39.130 0.00 0.00 0.00 5.36
27 28 3.320673 TTGTGTTTTCGTTTTTGCCCT 57.679 38.095 0.00 0.00 0.00 5.19
28 29 3.320673 TGTGTTTTCGTTTTTGCCCTT 57.679 38.095 0.00 0.00 0.00 3.95
29 30 3.665190 TGTGTTTTCGTTTTTGCCCTTT 58.335 36.364 0.00 0.00 0.00 3.11
30 31 3.433615 TGTGTTTTCGTTTTTGCCCTTTG 59.566 39.130 0.00 0.00 0.00 2.77
31 32 3.003480 TGTTTTCGTTTTTGCCCTTTGG 58.997 40.909 0.00 0.00 0.00 3.28
42 43 2.846371 CCCTTTGGCTCTTGTCGAG 58.154 57.895 0.00 0.00 42.88 4.04
49 50 2.977178 CTCTTGTCGAGCAGGGCT 59.023 61.111 0.00 0.00 43.88 5.19
50 51 1.447489 CTCTTGTCGAGCAGGGCTG 60.447 63.158 0.00 0.00 39.88 4.85
51 52 2.164865 CTCTTGTCGAGCAGGGCTGT 62.165 60.000 0.00 0.00 39.88 4.40
52 53 0.898326 TCTTGTCGAGCAGGGCTGTA 60.898 55.000 0.00 0.00 39.88 2.74
53 54 0.037326 CTTGTCGAGCAGGGCTGTAA 60.037 55.000 0.00 0.00 39.88 2.41
54 55 0.613260 TTGTCGAGCAGGGCTGTAAT 59.387 50.000 0.00 0.00 39.88 1.89
55 56 1.480789 TGTCGAGCAGGGCTGTAATA 58.519 50.000 0.00 0.00 39.88 0.98
56 57 1.828595 TGTCGAGCAGGGCTGTAATAA 59.171 47.619 0.00 0.00 39.88 1.40
57 58 2.202566 GTCGAGCAGGGCTGTAATAAC 58.797 52.381 0.00 0.00 39.88 1.89
58 59 1.202371 TCGAGCAGGGCTGTAATAACG 60.202 52.381 0.00 0.00 39.88 3.18
59 60 1.583054 GAGCAGGGCTGTAATAACGG 58.417 55.000 0.00 0.00 39.88 4.44
60 61 0.909623 AGCAGGGCTGTAATAACGGT 59.090 50.000 0.00 0.00 37.57 4.83
61 62 1.280998 AGCAGGGCTGTAATAACGGTT 59.719 47.619 0.00 0.00 37.57 4.44
62 63 2.089201 GCAGGGCTGTAATAACGGTTT 58.911 47.619 0.00 0.00 34.20 3.27
63 64 3.054948 AGCAGGGCTGTAATAACGGTTTA 60.055 43.478 0.00 0.00 37.57 2.01
64 65 3.690628 GCAGGGCTGTAATAACGGTTTAA 59.309 43.478 0.00 0.00 34.20 1.52
65 66 4.156373 GCAGGGCTGTAATAACGGTTTAAA 59.844 41.667 0.00 0.00 34.20 1.52
66 67 5.675323 GCAGGGCTGTAATAACGGTTTAAAG 60.675 44.000 0.00 0.00 34.20 1.85
67 68 4.397103 AGGGCTGTAATAACGGTTTAAAGC 59.603 41.667 7.34 7.34 38.60 3.51
69 70 5.556355 GCTGTAATAACGGTTTAAAGCCT 57.444 39.130 11.61 2.30 34.96 4.58
70 71 5.329493 GCTGTAATAACGGTTTAAAGCCTG 58.671 41.667 11.61 1.65 34.96 4.85
71 72 5.675323 GCTGTAATAACGGTTTAAAGCCTGG 60.675 44.000 11.61 0.96 34.96 4.45
72 73 5.558818 TGTAATAACGGTTTAAAGCCTGGA 58.441 37.500 11.61 0.00 0.00 3.86
73 74 5.412286 TGTAATAACGGTTTAAAGCCTGGAC 59.588 40.000 11.61 3.96 0.00 4.02
74 75 2.351706 AACGGTTTAAAGCCTGGACA 57.648 45.000 11.61 0.00 0.00 4.02
75 76 2.351706 ACGGTTTAAAGCCTGGACAA 57.648 45.000 11.61 0.00 0.00 3.18
76 77 2.871453 ACGGTTTAAAGCCTGGACAAT 58.129 42.857 11.61 0.00 0.00 2.71
77 78 2.556622 ACGGTTTAAAGCCTGGACAATG 59.443 45.455 11.61 0.00 0.00 2.82
78 79 2.817258 CGGTTTAAAGCCTGGACAATGA 59.183 45.455 11.61 0.00 0.00 2.57
79 80 3.254657 CGGTTTAAAGCCTGGACAATGAA 59.745 43.478 11.61 0.00 0.00 2.57
80 81 4.556233 GGTTTAAAGCCTGGACAATGAAC 58.444 43.478 6.10 0.00 0.00 3.18
81 82 4.556233 GTTTAAAGCCTGGACAATGAACC 58.444 43.478 0.00 0.00 0.00 3.62
82 83 2.683211 AAAGCCTGGACAATGAACCT 57.317 45.000 0.00 0.00 0.00 3.50
83 84 2.683211 AAGCCTGGACAATGAACCTT 57.317 45.000 0.00 0.00 0.00 3.50
84 85 3.806949 AAGCCTGGACAATGAACCTTA 57.193 42.857 0.00 0.00 0.00 2.69
85 86 3.356529 AGCCTGGACAATGAACCTTAG 57.643 47.619 0.00 0.00 0.00 2.18
86 87 1.745653 GCCTGGACAATGAACCTTAGC 59.254 52.381 0.00 0.00 0.00 3.09
87 88 2.619074 GCCTGGACAATGAACCTTAGCT 60.619 50.000 0.00 0.00 0.00 3.32
88 89 3.690460 CCTGGACAATGAACCTTAGCTT 58.310 45.455 0.00 0.00 0.00 3.74
89 90 4.843728 CCTGGACAATGAACCTTAGCTTA 58.156 43.478 0.00 0.00 0.00 3.09
90 91 4.878397 CCTGGACAATGAACCTTAGCTTAG 59.122 45.833 0.00 0.00 0.00 2.18
91 92 5.491982 CTGGACAATGAACCTTAGCTTAGT 58.508 41.667 0.00 0.00 0.00 2.24
92 93 6.351881 CCTGGACAATGAACCTTAGCTTAGTA 60.352 42.308 0.00 0.00 0.00 1.82
93 94 6.640518 TGGACAATGAACCTTAGCTTAGTAG 58.359 40.000 0.00 0.00 0.00 2.57
108 109 5.956642 GCTTAGTAGCTGTTAAGACTCTGT 58.043 41.667 18.09 0.00 44.27 3.41
109 110 7.086230 GCTTAGTAGCTGTTAAGACTCTGTA 57.914 40.000 18.09 0.00 44.27 2.74
110 111 7.708998 GCTTAGTAGCTGTTAAGACTCTGTAT 58.291 38.462 18.09 0.00 44.27 2.29
111 112 7.646130 GCTTAGTAGCTGTTAAGACTCTGTATG 59.354 40.741 18.09 0.00 44.27 2.39
112 113 6.458232 AGTAGCTGTTAAGACTCTGTATGG 57.542 41.667 0.00 0.00 0.00 2.74
113 114 5.952947 AGTAGCTGTTAAGACTCTGTATGGT 59.047 40.000 0.00 0.00 0.00 3.55
114 115 5.746990 AGCTGTTAAGACTCTGTATGGTT 57.253 39.130 0.00 0.00 0.00 3.67
115 116 6.115448 AGCTGTTAAGACTCTGTATGGTTT 57.885 37.500 0.00 0.00 0.00 3.27
116 117 6.166982 AGCTGTTAAGACTCTGTATGGTTTC 58.833 40.000 0.00 0.00 0.00 2.78
117 118 5.932303 GCTGTTAAGACTCTGTATGGTTTCA 59.068 40.000 0.00 0.00 0.00 2.69
118 119 6.595716 GCTGTTAAGACTCTGTATGGTTTCAT 59.404 38.462 0.00 0.00 37.40 2.57
119 120 7.119846 GCTGTTAAGACTCTGTATGGTTTCATT 59.880 37.037 0.00 0.00 34.96 2.57
120 121 8.547967 TGTTAAGACTCTGTATGGTTTCATTC 57.452 34.615 0.00 0.00 34.96 2.67
121 122 8.375506 TGTTAAGACTCTGTATGGTTTCATTCT 58.624 33.333 0.00 0.00 34.96 2.40
122 123 8.660373 GTTAAGACTCTGTATGGTTTCATTCTG 58.340 37.037 0.00 0.00 34.96 3.02
123 124 5.738909 AGACTCTGTATGGTTTCATTCTGG 58.261 41.667 0.00 0.00 34.96 3.86
124 125 5.249393 AGACTCTGTATGGTTTCATTCTGGT 59.751 40.000 0.00 0.00 34.96 4.00
125 126 5.880901 ACTCTGTATGGTTTCATTCTGGTT 58.119 37.500 0.00 0.00 34.96 3.67
126 127 7.016153 ACTCTGTATGGTTTCATTCTGGTTA 57.984 36.000 0.00 0.00 34.96 2.85
127 128 7.458397 ACTCTGTATGGTTTCATTCTGGTTAA 58.542 34.615 0.00 0.00 34.96 2.01
128 129 8.109634 ACTCTGTATGGTTTCATTCTGGTTAAT 58.890 33.333 0.00 0.00 34.96 1.40
129 130 8.279970 TCTGTATGGTTTCATTCTGGTTAATG 57.720 34.615 0.00 0.00 38.05 1.90
130 131 7.339212 TCTGTATGGTTTCATTCTGGTTAATGG 59.661 37.037 0.00 0.00 37.44 3.16
131 132 7.178573 TGTATGGTTTCATTCTGGTTAATGGA 58.821 34.615 0.00 0.00 37.44 3.41
132 133 7.671819 TGTATGGTTTCATTCTGGTTAATGGAA 59.328 33.333 0.00 0.00 37.44 3.53
143 144 3.180891 GTTAATGGAACCGGAGAGAGG 57.819 52.381 9.46 0.00 31.20 3.69
144 145 1.120530 TAATGGAACCGGAGAGAGGC 58.879 55.000 9.46 0.00 0.00 4.70
145 146 1.627297 AATGGAACCGGAGAGAGGCC 61.627 60.000 9.46 0.00 0.00 5.19
146 147 2.364448 GGAACCGGAGAGAGGCCT 60.364 66.667 9.46 3.86 0.00 5.19
147 148 2.428085 GGAACCGGAGAGAGGCCTC 61.428 68.421 26.22 26.22 39.72 4.70
155 156 1.494960 GAGAGAGGCCTCCATGTTCT 58.505 55.000 29.54 23.57 40.30 3.01
156 157 1.836802 GAGAGAGGCCTCCATGTTCTT 59.163 52.381 29.54 7.98 40.30 2.52
157 158 1.836802 AGAGAGGCCTCCATGTTCTTC 59.163 52.381 29.54 16.93 40.30 2.87
158 159 1.836802 GAGAGGCCTCCATGTTCTTCT 59.163 52.381 29.54 6.31 33.30 2.85
159 160 3.034635 GAGAGGCCTCCATGTTCTTCTA 58.965 50.000 29.54 0.00 33.30 2.10
160 161 3.452627 GAGAGGCCTCCATGTTCTTCTAA 59.547 47.826 29.54 0.00 33.30 2.10
212 213 1.146041 GGCCGTATCTGCACCATGA 59.854 57.895 0.00 0.00 0.00 3.07
218 219 0.823460 TATCTGCACCATGAGTCGCA 59.177 50.000 0.00 3.30 33.41 5.10
235 236 6.128391 TGAGTCGCAACTTTATTACACATTCC 60.128 38.462 0.00 0.00 35.28 3.01
236 237 5.938125 AGTCGCAACTTTATTACACATTCCT 59.062 36.000 0.00 0.00 28.74 3.36
237 238 7.101054 AGTCGCAACTTTATTACACATTCCTA 58.899 34.615 0.00 0.00 28.74 2.94
238 239 7.064253 AGTCGCAACTTTATTACACATTCCTAC 59.936 37.037 0.00 0.00 28.74 3.18
278 286 1.006832 CTTACCGCTCATCCCAAACG 58.993 55.000 0.00 0.00 0.00 3.60
376 387 7.744715 CACTTTTTAAAACGCTATAGTGTCCTG 59.255 37.037 18.89 6.90 37.87 3.86
382 393 3.021695 ACGCTATAGTGTCCTGTTAGCA 58.978 45.455 13.24 0.00 35.27 3.49
387 398 0.038159 AGTGTCCTGTTAGCAGCGAC 60.038 55.000 16.10 16.10 41.26 5.19
421 432 4.472691 TTTTCACTCGTCTTGCATCAAG 57.527 40.909 0.00 0.37 42.25 3.02
436 447 7.596248 TCTTGCATCAAGTTCAATAAAAGAAGC 59.404 33.333 6.47 0.00 41.66 3.86
457 468 6.438259 AGCTGCATGCATCAGAATAATATC 57.562 37.500 22.97 8.30 45.94 1.63
462 473 5.503683 GCATGCATCAGAATAATATCGAGGC 60.504 44.000 14.21 0.00 33.54 4.70
488 499 6.183360 CCGGATCTCAACCTTCTTTTTGATAC 60.183 42.308 0.00 0.00 31.41 2.24
489 500 6.595716 CGGATCTCAACCTTCTTTTTGATACT 59.404 38.462 0.00 0.00 31.41 2.12
490 501 7.201565 CGGATCTCAACCTTCTTTTTGATACTC 60.202 40.741 0.00 0.00 31.41 2.59
491 502 7.066404 GGATCTCAACCTTCTTTTTGATACTCC 59.934 40.741 0.00 0.00 31.41 3.85
492 503 6.238648 TCTCAACCTTCTTTTTGATACTCCC 58.761 40.000 0.00 0.00 31.41 4.30
493 504 6.044404 TCTCAACCTTCTTTTTGATACTCCCT 59.956 38.462 0.00 0.00 31.41 4.20
494 505 6.238648 TCAACCTTCTTTTTGATACTCCCTC 58.761 40.000 0.00 0.00 0.00 4.30
495 506 5.180810 ACCTTCTTTTTGATACTCCCTCC 57.819 43.478 0.00 0.00 0.00 4.30
496 507 4.601857 ACCTTCTTTTTGATACTCCCTCCA 59.398 41.667 0.00 0.00 0.00 3.86
497 508 5.254032 ACCTTCTTTTTGATACTCCCTCCAT 59.746 40.000 0.00 0.00 0.00 3.41
498 509 6.190587 CCTTCTTTTTGATACTCCCTCCATT 58.809 40.000 0.00 0.00 0.00 3.16
499 510 6.665248 CCTTCTTTTTGATACTCCCTCCATTT 59.335 38.462 0.00 0.00 0.00 2.32
500 511 7.148000 CCTTCTTTTTGATACTCCCTCCATTTC 60.148 40.741 0.00 0.00 0.00 2.17
501 512 6.789268 TCTTTTTGATACTCCCTCCATTTCA 58.211 36.000 0.00 0.00 0.00 2.69
502 513 7.413446 TCTTTTTGATACTCCCTCCATTTCAT 58.587 34.615 0.00 0.00 0.00 2.57
503 514 8.556589 TCTTTTTGATACTCCCTCCATTTCATA 58.443 33.333 0.00 0.00 0.00 2.15
504 515 9.189156 CTTTTTGATACTCCCTCCATTTCATAA 57.811 33.333 0.00 0.00 0.00 1.90
505 516 9.713684 TTTTTGATACTCCCTCCATTTCATAAT 57.286 29.630 0.00 0.00 0.00 1.28
512 523 8.814038 ACTCCCTCCATTTCATAATATAATGC 57.186 34.615 0.00 0.00 0.00 3.56
513 524 7.554118 ACTCCCTCCATTTCATAATATAATGCG 59.446 37.037 0.00 0.00 0.00 4.73
514 525 6.318648 TCCCTCCATTTCATAATATAATGCGC 59.681 38.462 0.00 0.00 0.00 6.09
515 526 6.460123 CCCTCCATTTCATAATATAATGCGCC 60.460 42.308 4.18 0.00 0.00 6.53
516 527 6.449635 TCCATTTCATAATATAATGCGCCC 57.550 37.500 4.18 0.00 0.00 6.13
517 528 5.065859 TCCATTTCATAATATAATGCGCCCG 59.934 40.000 4.18 0.00 0.00 6.13
518 529 4.349663 TTTCATAATATAATGCGCCCGC 57.650 40.909 4.18 5.60 42.35 6.13
519 530 1.930503 TCATAATATAATGCGCCCGCG 59.069 47.619 4.18 4.36 45.51 6.46
529 540 3.722295 CGCCCGCGCTTTTCAAGA 61.722 61.111 5.56 0.00 0.00 3.02
530 541 2.877691 GCCCGCGCTTTTCAAGAT 59.122 55.556 5.56 0.00 0.00 2.40
531 542 1.212751 GCCCGCGCTTTTCAAGATT 59.787 52.632 5.56 0.00 0.00 2.40
532 543 0.798389 GCCCGCGCTTTTCAAGATTC 60.798 55.000 5.56 0.00 0.00 2.52
533 544 0.521291 CCCGCGCTTTTCAAGATTCA 59.479 50.000 5.56 0.00 0.00 2.57
534 545 1.068610 CCCGCGCTTTTCAAGATTCAA 60.069 47.619 5.56 0.00 0.00 2.69
535 546 2.245096 CCGCGCTTTTCAAGATTCAAG 58.755 47.619 5.56 0.00 0.00 3.02
536 547 2.350772 CCGCGCTTTTCAAGATTCAAGT 60.351 45.455 5.56 0.00 0.00 3.16
537 548 3.300009 CGCGCTTTTCAAGATTCAAGTT 58.700 40.909 5.56 0.00 0.00 2.66
538 549 3.730715 CGCGCTTTTCAAGATTCAAGTTT 59.269 39.130 5.56 0.00 0.00 2.66
539 550 4.374309 CGCGCTTTTCAAGATTCAAGTTTG 60.374 41.667 5.56 0.00 0.00 2.93
540 551 4.739716 GCGCTTTTCAAGATTCAAGTTTGA 59.260 37.500 0.00 0.00 34.92 2.69
541 552 5.403466 GCGCTTTTCAAGATTCAAGTTTGAT 59.597 36.000 0.00 0.00 37.00 2.57
542 553 6.399354 GCGCTTTTCAAGATTCAAGTTTGATC 60.399 38.462 0.00 0.00 37.00 2.92
543 554 6.183359 CGCTTTTCAAGATTCAAGTTTGATCG 60.183 38.462 0.00 0.00 37.00 3.69
544 555 6.638468 GCTTTTCAAGATTCAAGTTTGATCGT 59.362 34.615 0.00 0.00 37.00 3.73
545 556 7.803189 GCTTTTCAAGATTCAAGTTTGATCGTA 59.197 33.333 0.00 0.00 37.00 3.43
546 557 9.663904 CTTTTCAAGATTCAAGTTTGATCGTAA 57.336 29.630 0.00 0.00 37.00 3.18
558 569 9.257865 CAAGTTTGATCGTAAATTTAACTACCG 57.742 33.333 0.00 0.00 0.00 4.02
559 570 8.761575 AGTTTGATCGTAAATTTAACTACCGA 57.238 30.769 9.43 9.43 0.00 4.69
560 571 8.866956 AGTTTGATCGTAAATTTAACTACCGAG 58.133 33.333 11.80 0.00 0.00 4.63
561 572 8.863049 GTTTGATCGTAAATTTAACTACCGAGA 58.137 33.333 11.80 1.82 0.00 4.04
562 573 7.975866 TGATCGTAAATTTAACTACCGAGAC 57.024 36.000 11.80 9.42 0.00 3.36
563 574 6.974622 TGATCGTAAATTTAACTACCGAGACC 59.025 38.462 11.80 6.24 0.00 3.85
564 575 6.515272 TCGTAAATTTAACTACCGAGACCT 57.485 37.500 0.00 0.00 0.00 3.85
565 576 7.624360 TCGTAAATTTAACTACCGAGACCTA 57.376 36.000 0.00 0.00 0.00 3.08
566 577 7.472543 TCGTAAATTTAACTACCGAGACCTAC 58.527 38.462 0.00 0.00 0.00 3.18
567 578 7.336931 TCGTAAATTTAACTACCGAGACCTACT 59.663 37.037 0.00 0.00 0.00 2.57
568 579 7.430502 CGTAAATTTAACTACCGAGACCTACTG 59.569 40.741 0.00 0.00 0.00 2.74
569 580 6.847421 AATTTAACTACCGAGACCTACTGT 57.153 37.500 0.00 0.00 0.00 3.55
570 581 5.633830 TTTAACTACCGAGACCTACTGTG 57.366 43.478 0.00 0.00 0.00 3.66
571 582 2.125773 ACTACCGAGACCTACTGTGG 57.874 55.000 0.00 0.00 0.00 4.17
572 583 0.739561 CTACCGAGACCTACTGTGGC 59.260 60.000 0.00 0.00 0.00 5.01
573 584 1.028330 TACCGAGACCTACTGTGGCG 61.028 60.000 0.00 0.00 0.00 5.69
574 585 2.490217 CGAGACCTACTGTGGCGG 59.510 66.667 0.00 0.00 0.00 6.13
575 586 2.893398 GAGACCTACTGTGGCGGG 59.107 66.667 0.00 0.00 0.00 6.13
576 587 1.681327 GAGACCTACTGTGGCGGGA 60.681 63.158 0.00 0.00 0.00 5.14
577 588 1.668101 GAGACCTACTGTGGCGGGAG 61.668 65.000 0.00 0.00 0.00 4.30
596 607 7.548196 CGGGAGCAAAAATTATACTAGTGAA 57.452 36.000 5.39 0.00 0.00 3.18
597 608 8.154649 CGGGAGCAAAAATTATACTAGTGAAT 57.845 34.615 5.39 2.30 0.00 2.57
598 609 8.621286 CGGGAGCAAAAATTATACTAGTGAATT 58.379 33.333 5.39 8.53 0.00 2.17
599 610 9.952188 GGGAGCAAAAATTATACTAGTGAATTC 57.048 33.333 5.39 0.00 0.00 2.17
614 625 9.653287 ACTAGTGAATTCAGTTTTTCGATATCA 57.347 29.630 20.52 0.00 0.00 2.15
624 635 9.226606 TCAGTTTTTCGATATCAATTTAGTGGT 57.773 29.630 3.12 0.00 0.00 4.16
642 653 6.644248 AGTGGTATAATTTTTATTCCCGCC 57.356 37.500 0.00 0.00 0.00 6.13
643 654 5.239963 AGTGGTATAATTTTTATTCCCGCCG 59.760 40.000 0.00 0.00 0.00 6.46
644 655 4.023021 TGGTATAATTTTTATTCCCGCCGC 60.023 41.667 0.00 0.00 0.00 6.53
645 656 4.023021 GGTATAATTTTTATTCCCGCCGCA 60.023 41.667 0.00 0.00 0.00 5.69
646 657 2.577449 AATTTTTATTCCCGCCGCAG 57.423 45.000 0.00 0.00 0.00 5.18
647 658 1.470051 ATTTTTATTCCCGCCGCAGT 58.530 45.000 0.00 0.00 0.00 4.40
648 659 0.806241 TTTTTATTCCCGCCGCAGTC 59.194 50.000 0.00 0.00 0.00 3.51
649 660 1.363145 TTTTATTCCCGCCGCAGTCG 61.363 55.000 0.00 0.00 0.00 4.18
659 670 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
660 671 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
661 672 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
662 673 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
663 674 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
664 675 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
665 676 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
666 677 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
667 678 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
668 679 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
669 680 5.990996 AGTCGGTCTCGTTGGTTAAATTTAA 59.009 36.000 6.54 6.54 37.69 1.52
670 681 6.482973 AGTCGGTCTCGTTGGTTAAATTTAAA 59.517 34.615 12.14 0.00 37.69 1.52
671 682 7.173735 AGTCGGTCTCGTTGGTTAAATTTAAAT 59.826 33.333 12.14 0.00 37.69 1.40
672 683 7.804600 GTCGGTCTCGTTGGTTAAATTTAAATT 59.195 33.333 12.14 7.64 37.69 1.82
673 684 8.016801 TCGGTCTCGTTGGTTAAATTTAAATTC 58.983 33.333 13.68 6.30 37.69 2.17
674 685 7.804129 CGGTCTCGTTGGTTAAATTTAAATTCA 59.196 33.333 13.68 8.54 0.00 2.57
675 686 9.465985 GGTCTCGTTGGTTAAATTTAAATTCAA 57.534 29.630 13.68 13.17 0.00 2.69
688 699 9.506018 AAATTTAAATTCAAAGTTGGATCTGGG 57.494 29.630 13.68 0.00 0.00 4.45
689 700 6.603940 TTAAATTCAAAGTTGGATCTGGGG 57.396 37.500 0.00 0.00 0.00 4.96
690 701 4.402616 AATTCAAAGTTGGATCTGGGGA 57.597 40.909 0.00 0.00 0.00 4.81
691 702 3.439857 TTCAAAGTTGGATCTGGGGAG 57.560 47.619 0.00 0.00 0.00 4.30
692 703 1.004745 TCAAAGTTGGATCTGGGGAGC 59.995 52.381 0.00 0.00 0.00 4.70
693 704 0.035056 AAAGTTGGATCTGGGGAGCG 60.035 55.000 0.00 0.00 0.00 5.03
694 705 1.201429 AAGTTGGATCTGGGGAGCGT 61.201 55.000 0.00 0.00 0.00 5.07
695 706 1.450312 GTTGGATCTGGGGAGCGTG 60.450 63.158 0.00 0.00 0.00 5.34
696 707 2.669133 TTGGATCTGGGGAGCGTGG 61.669 63.158 0.00 0.00 0.00 4.94
697 708 3.866582 GGATCTGGGGAGCGTGGG 61.867 72.222 0.00 0.00 0.00 4.61
698 709 4.554036 GATCTGGGGAGCGTGGGC 62.554 72.222 0.00 0.00 40.37 5.36
709 720 4.506005 CGTGGGCGCAGTACATTA 57.494 55.556 10.83 0.00 0.00 1.90
710 721 2.986311 CGTGGGCGCAGTACATTAT 58.014 52.632 10.83 0.00 0.00 1.28
711 722 0.581529 CGTGGGCGCAGTACATTATG 59.418 55.000 10.83 0.00 0.00 1.90
712 723 0.944386 GTGGGCGCAGTACATTATGG 59.056 55.000 10.83 0.00 0.00 2.74
713 724 0.833949 TGGGCGCAGTACATTATGGA 59.166 50.000 10.83 0.00 0.00 3.41
714 725 1.210722 TGGGCGCAGTACATTATGGAA 59.789 47.619 10.83 0.00 0.00 3.53
715 726 1.602377 GGGCGCAGTACATTATGGAAC 59.398 52.381 10.83 0.00 0.00 3.62
716 727 1.260561 GGCGCAGTACATTATGGAACG 59.739 52.381 10.83 0.00 0.00 3.95
717 728 1.260561 GCGCAGTACATTATGGAACGG 59.739 52.381 0.30 0.00 0.00 4.44
718 729 2.816689 CGCAGTACATTATGGAACGGA 58.183 47.619 0.00 0.00 0.00 4.69
719 730 2.794910 CGCAGTACATTATGGAACGGAG 59.205 50.000 0.00 0.00 0.00 4.63
720 731 3.131396 GCAGTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
721 732 3.728845 CAGTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
722 733 3.386726 CAGTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
723 734 3.641906 AGTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
725 736 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
727 738 4.283722 ACATTATGGAACGGAGGGAGTATC 59.716 45.833 0.00 0.00 0.00 2.24
731 742 3.563223 TGGAACGGAGGGAGTATCTAAG 58.437 50.000 0.00 0.00 33.73 2.18
734 745 4.648307 GGAACGGAGGGAGTATCTAAGAAA 59.352 45.833 0.00 0.00 33.73 2.52
735 746 5.304871 GGAACGGAGGGAGTATCTAAGAAAT 59.695 44.000 0.00 0.00 33.73 2.17
744 755 8.049721 AGGGAGTATCTAAGAAATCACCTTTTG 58.950 37.037 0.00 0.00 33.73 2.44
745 756 8.047310 GGGAGTATCTAAGAAATCACCTTTTGA 58.953 37.037 0.00 0.00 34.79 2.69
795 810 7.871853 ACCTGCACTAACTATGTTAAACAAAG 58.128 34.615 0.00 0.00 0.00 2.77
836 2814 3.887110 TCTCCGTACACGAATGGATGTAT 59.113 43.478 2.76 0.00 43.02 2.29
868 2846 0.608856 ACCCAGCAAATCATGTGCGA 60.609 50.000 0.00 0.00 46.86 5.10
1047 3036 0.962489 CGGCGATCCAGATAACTCCT 59.038 55.000 0.00 0.00 0.00 3.69
1091 3080 2.753452 ACGACGACAATGAGATACCAGT 59.247 45.455 0.00 0.00 0.00 4.00
1095 3084 2.543861 CGACAATGAGATACCAGTCCCG 60.544 54.545 0.00 0.00 0.00 5.14
1380 3372 2.326550 CGCGGCTTCAACGTGTTT 59.673 55.556 0.00 0.00 37.10 2.83
1437 3432 2.716017 GGACCAGCTCCGGAGTCTG 61.716 68.421 32.15 32.15 34.56 3.51
1458 3456 4.394712 CTCCGGCCGCTGGACTTT 62.395 66.667 22.85 0.00 33.41 2.66
1470 3468 1.605710 CTGGACTTTGTGCACTCCTTG 59.394 52.381 19.41 9.63 29.42 3.61
1491 3489 4.404654 GCGGCCGTGCTTTTCCTG 62.405 66.667 28.70 0.00 0.00 3.86
1516 3514 2.420043 CGTTCAGTGACGTGGGGT 59.580 61.111 0.00 0.00 38.19 4.95
1521 3519 1.821759 CAGTGACGTGGGGTTGCAA 60.822 57.895 0.00 0.00 0.00 4.08
1602 3600 1.378531 GCATGGCGTTTCTATCCACA 58.621 50.000 0.00 0.00 31.94 4.17
1626 3624 0.036164 TGTTCACCATCTTCCCCACG 59.964 55.000 0.00 0.00 0.00 4.94
1759 3861 4.083324 ACGTCGATGCATGAATTTTCTTGT 60.083 37.500 2.46 0.00 35.48 3.16
1760 3862 4.261349 CGTCGATGCATGAATTTTCTTGTG 59.739 41.667 2.46 0.00 35.48 3.33
1769 3871 9.033481 TGCATGAATTTTCTTGTGAACTTTAAG 57.967 29.630 0.00 0.00 35.48 1.85
1818 3922 6.571731 GCACCAATCAATGAATAGATGATGGG 60.572 42.308 6.82 6.82 46.10 4.00
1820 3924 7.154435 CCAATCAATGAATAGATGATGGGTC 57.846 40.000 1.04 0.00 39.07 4.46
1839 3943 4.274950 GGGTCGTCATTCTCTTTGTCAAAA 59.725 41.667 0.00 0.00 0.00 2.44
1957 4103 3.228453 GTTGTACTCCCTCCGATCCATA 58.772 50.000 0.00 0.00 0.00 2.74
1972 4118 5.280470 CCGATCCATATTAATTGTCCCTGGA 60.280 44.000 0.00 0.00 35.89 3.86
1980 4126 3.567478 AATTGTCCCTGGATGAGTAGC 57.433 47.619 0.00 0.00 0.00 3.58
1982 4128 2.254152 TGTCCCTGGATGAGTAGCTT 57.746 50.000 0.00 0.00 0.00 3.74
2007 4157 6.042143 TCTTTTCTCTTGCAAAACATGGTTC 58.958 36.000 0.00 0.00 0.00 3.62
2052 4214 8.145122 TGGGGATTACTTGTTTTGTTCATTAAC 58.855 33.333 0.00 0.00 36.07 2.01
2061 4223 5.009610 TGTTTTGTTCATTAACAGGGCTCTC 59.990 40.000 0.00 0.00 45.99 3.20
2115 4277 4.575236 TGTAGAAAACACGGCACATGTAAA 59.425 37.500 0.00 0.00 28.05 2.01
2116 4278 4.640789 AGAAAACACGGCACATGTAAAA 57.359 36.364 0.00 0.00 28.05 1.52
2117 4279 4.356289 AGAAAACACGGCACATGTAAAAC 58.644 39.130 0.00 0.00 28.05 2.43
2118 4280 3.784701 AAACACGGCACATGTAAAACA 57.215 38.095 0.00 0.00 28.05 2.83
2119 4281 2.766970 ACACGGCACATGTAAAACAC 57.233 45.000 0.00 0.00 27.05 3.32
2120 4282 2.017782 ACACGGCACATGTAAAACACA 58.982 42.857 0.00 0.00 42.69 3.72
2130 4292 2.790433 TGTAAAACACATGAGAGGCCC 58.210 47.619 0.00 0.00 30.04 5.80
2131 4293 2.375174 TGTAAAACACATGAGAGGCCCT 59.625 45.455 0.00 0.00 30.04 5.19
2133 4295 2.683211 AAACACATGAGAGGCCCTTT 57.317 45.000 0.00 0.00 0.00 3.11
2135 4297 1.067295 ACACATGAGAGGCCCTTTCA 58.933 50.000 6.42 6.42 0.00 2.69
2136 4298 1.425066 ACACATGAGAGGCCCTTTCAA 59.575 47.619 8.21 0.00 28.70 2.69
2137 4299 2.158475 ACACATGAGAGGCCCTTTCAAA 60.158 45.455 8.21 0.00 28.70 2.69
2138 4300 2.892852 CACATGAGAGGCCCTTTCAAAA 59.107 45.455 8.21 0.00 28.70 2.44
2189 4351 3.801698 AGACGCATGAGCTATGTTGAAT 58.198 40.909 0.00 0.00 39.08 2.57
2240 5199 3.244561 TGGATCGCTGAGAAAGAACCTTT 60.245 43.478 0.00 0.00 0.00 3.11
2253 5212 6.488344 AGAAAGAACCTTTGACTCATTTCCTC 59.512 38.462 0.00 0.00 0.00 3.71
2364 5324 5.993106 GTGAAAGACACTGACTTAAGCTT 57.007 39.130 3.48 3.48 45.13 3.74
2423 5476 4.365514 TCACCAGAATTACAAAGCTCCA 57.634 40.909 0.00 0.00 0.00 3.86
2563 5711 2.560981 TGTCGATGACAGCCAGAAAGTA 59.439 45.455 0.00 0.00 37.67 2.24
2591 5739 1.470285 GCGTGCCCGTAAAGATCAGTA 60.470 52.381 0.00 0.00 36.15 2.74
2607 5878 5.949354 AGATCAGTACTCAAGAGTTACAGCT 59.051 40.000 8.17 0.00 42.54 4.24
2620 5891 0.319555 TACAGCTGTCGCCAACTGAC 60.320 55.000 25.56 0.00 37.01 3.51
2666 5937 3.303924 CGTCATCTTGCACACACAATCAA 60.304 43.478 0.00 0.00 0.00 2.57
2667 5938 4.609947 GTCATCTTGCACACACAATCAAA 58.390 39.130 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.254842 GCAAAAACGAAAACACAATGAAGG 58.745 37.500 0.00 0.00 0.00 3.46
2 3 5.254842 GGCAAAAACGAAAACACAATGAAG 58.745 37.500 0.00 0.00 0.00 3.02
3 4 4.093556 GGGCAAAAACGAAAACACAATGAA 59.906 37.500 0.00 0.00 0.00 2.57
4 5 3.619038 GGGCAAAAACGAAAACACAATGA 59.381 39.130 0.00 0.00 0.00 2.57
5 6 3.620821 AGGGCAAAAACGAAAACACAATG 59.379 39.130 0.00 0.00 0.00 2.82
6 7 3.867857 AGGGCAAAAACGAAAACACAAT 58.132 36.364 0.00 0.00 0.00 2.71
7 8 3.320673 AGGGCAAAAACGAAAACACAA 57.679 38.095 0.00 0.00 0.00 3.33
8 9 3.320673 AAGGGCAAAAACGAAAACACA 57.679 38.095 0.00 0.00 0.00 3.72
9 10 3.181515 CCAAAGGGCAAAAACGAAAACAC 60.182 43.478 0.00 0.00 0.00 3.32
10 11 3.003480 CCAAAGGGCAAAAACGAAAACA 58.997 40.909 0.00 0.00 0.00 2.83
11 12 3.666883 CCAAAGGGCAAAAACGAAAAC 57.333 42.857 0.00 0.00 0.00 2.43
24 25 2.846371 CTCGACAAGAGCCAAAGGG 58.154 57.895 0.00 0.00 40.54 3.95
33 34 0.898326 TACAGCCCTGCTCGACAAGA 60.898 55.000 0.00 0.00 36.40 3.02
34 35 0.037326 TTACAGCCCTGCTCGACAAG 60.037 55.000 0.00 0.00 36.40 3.16
35 36 0.613260 ATTACAGCCCTGCTCGACAA 59.387 50.000 0.00 0.00 36.40 3.18
36 37 1.480789 TATTACAGCCCTGCTCGACA 58.519 50.000 0.00 0.00 36.40 4.35
37 38 2.202566 GTTATTACAGCCCTGCTCGAC 58.797 52.381 0.00 0.00 36.40 4.20
38 39 1.202371 CGTTATTACAGCCCTGCTCGA 60.202 52.381 0.00 0.00 36.40 4.04
39 40 1.209128 CGTTATTACAGCCCTGCTCG 58.791 55.000 0.00 0.00 36.40 5.03
40 41 1.134491 ACCGTTATTACAGCCCTGCTC 60.134 52.381 0.00 0.00 36.40 4.26
41 42 0.909623 ACCGTTATTACAGCCCTGCT 59.090 50.000 0.00 0.00 40.77 4.24
42 43 1.746470 AACCGTTATTACAGCCCTGC 58.254 50.000 0.00 0.00 0.00 4.85
43 44 5.675323 GCTTTAAACCGTTATTACAGCCCTG 60.675 44.000 0.00 0.00 32.51 4.45
44 45 4.397103 GCTTTAAACCGTTATTACAGCCCT 59.603 41.667 0.00 0.00 32.51 5.19
45 46 4.439153 GGCTTTAAACCGTTATTACAGCCC 60.439 45.833 13.91 2.75 44.70 5.19
46 47 4.665212 GGCTTTAAACCGTTATTACAGCC 58.335 43.478 11.22 11.22 44.42 4.85
47 48 5.329493 CAGGCTTTAAACCGTTATTACAGC 58.671 41.667 0.00 0.00 36.04 4.40
48 49 5.644636 TCCAGGCTTTAAACCGTTATTACAG 59.355 40.000 0.00 0.00 0.00 2.74
49 50 5.412286 GTCCAGGCTTTAAACCGTTATTACA 59.588 40.000 0.00 0.00 0.00 2.41
50 51 5.412286 TGTCCAGGCTTTAAACCGTTATTAC 59.588 40.000 0.00 0.00 0.00 1.89
51 52 5.558818 TGTCCAGGCTTTAAACCGTTATTA 58.441 37.500 0.00 0.00 0.00 0.98
52 53 4.400120 TGTCCAGGCTTTAAACCGTTATT 58.600 39.130 0.00 0.00 0.00 1.40
53 54 4.023726 TGTCCAGGCTTTAAACCGTTAT 57.976 40.909 0.00 0.00 0.00 1.89
54 55 3.488778 TGTCCAGGCTTTAAACCGTTA 57.511 42.857 0.00 0.00 0.00 3.18
55 56 2.351706 TGTCCAGGCTTTAAACCGTT 57.648 45.000 0.00 0.00 0.00 4.44
56 57 2.351706 TTGTCCAGGCTTTAAACCGT 57.648 45.000 0.00 0.00 0.00 4.83
57 58 2.817258 TCATTGTCCAGGCTTTAAACCG 59.183 45.455 0.00 0.00 0.00 4.44
58 59 4.556233 GTTCATTGTCCAGGCTTTAAACC 58.444 43.478 0.00 0.00 0.00 3.27
59 60 4.280929 AGGTTCATTGTCCAGGCTTTAAAC 59.719 41.667 0.00 0.00 0.00 2.01
60 61 4.479158 AGGTTCATTGTCCAGGCTTTAAA 58.521 39.130 0.00 0.00 0.00 1.52
61 62 4.112634 AGGTTCATTGTCCAGGCTTTAA 57.887 40.909 0.00 0.00 0.00 1.52
62 63 3.806949 AGGTTCATTGTCCAGGCTTTA 57.193 42.857 0.00 0.00 0.00 1.85
63 64 2.683211 AGGTTCATTGTCCAGGCTTT 57.317 45.000 0.00 0.00 0.00 3.51
64 65 2.683211 AAGGTTCATTGTCCAGGCTT 57.317 45.000 0.00 0.00 0.00 4.35
65 66 2.619074 GCTAAGGTTCATTGTCCAGGCT 60.619 50.000 0.00 0.00 0.00 4.58
66 67 1.745653 GCTAAGGTTCATTGTCCAGGC 59.254 52.381 4.21 0.00 0.00 4.85
67 68 3.356529 AGCTAAGGTTCATTGTCCAGG 57.643 47.619 0.00 0.00 0.00 4.45
68 69 5.491982 ACTAAGCTAAGGTTCATTGTCCAG 58.508 41.667 0.00 0.00 0.00 3.86
69 70 5.499004 ACTAAGCTAAGGTTCATTGTCCA 57.501 39.130 0.00 0.00 0.00 4.02
70 71 5.524281 GCTACTAAGCTAAGGTTCATTGTCC 59.476 44.000 0.00 0.00 45.85 4.02
71 72 6.591313 GCTACTAAGCTAAGGTTCATTGTC 57.409 41.667 0.00 0.00 45.85 3.18
86 87 8.132362 CCATACAGAGTCTTAACAGCTACTAAG 58.868 40.741 7.41 7.41 0.00 2.18
87 88 7.614583 ACCATACAGAGTCTTAACAGCTACTAA 59.385 37.037 0.00 0.00 0.00 2.24
88 89 7.117397 ACCATACAGAGTCTTAACAGCTACTA 58.883 38.462 0.00 0.00 0.00 1.82
89 90 5.952947 ACCATACAGAGTCTTAACAGCTACT 59.047 40.000 0.00 0.00 0.00 2.57
90 91 6.210287 ACCATACAGAGTCTTAACAGCTAC 57.790 41.667 0.00 0.00 0.00 3.58
91 92 6.852420 AACCATACAGAGTCTTAACAGCTA 57.148 37.500 0.00 0.00 0.00 3.32
92 93 5.746990 AACCATACAGAGTCTTAACAGCT 57.253 39.130 0.00 0.00 0.00 4.24
93 94 5.932303 TGAAACCATACAGAGTCTTAACAGC 59.068 40.000 0.00 0.00 0.00 4.40
94 95 8.553459 AATGAAACCATACAGAGTCTTAACAG 57.447 34.615 0.00 0.00 0.00 3.16
95 96 8.375506 AGAATGAAACCATACAGAGTCTTAACA 58.624 33.333 0.00 0.00 0.00 2.41
96 97 8.660373 CAGAATGAAACCATACAGAGTCTTAAC 58.340 37.037 0.00 0.00 39.69 2.01
97 98 7.824289 CCAGAATGAAACCATACAGAGTCTTAA 59.176 37.037 0.00 0.00 39.69 1.85
98 99 7.038302 ACCAGAATGAAACCATACAGAGTCTTA 60.038 37.037 0.00 0.00 39.69 2.10
99 100 6.176183 CCAGAATGAAACCATACAGAGTCTT 58.824 40.000 0.00 0.00 39.69 3.01
100 101 5.249393 ACCAGAATGAAACCATACAGAGTCT 59.751 40.000 0.00 0.00 39.69 3.24
101 102 5.491982 ACCAGAATGAAACCATACAGAGTC 58.508 41.667 0.00 0.00 39.69 3.36
102 103 5.505181 ACCAGAATGAAACCATACAGAGT 57.495 39.130 0.00 0.00 39.69 3.24
103 104 7.921786 TTAACCAGAATGAAACCATACAGAG 57.078 36.000 0.00 0.00 39.69 3.35
104 105 7.339212 CCATTAACCAGAATGAAACCATACAGA 59.661 37.037 0.00 0.00 39.69 3.41
105 106 7.339212 TCCATTAACCAGAATGAAACCATACAG 59.661 37.037 0.00 0.00 39.69 2.74
106 107 7.178573 TCCATTAACCAGAATGAAACCATACA 58.821 34.615 0.00 0.00 39.69 2.29
107 108 7.639113 TCCATTAACCAGAATGAAACCATAC 57.361 36.000 0.00 0.00 39.69 2.39
108 109 8.062065 GTTCCATTAACCAGAATGAAACCATA 57.938 34.615 0.00 0.00 39.69 2.74
109 110 6.935167 GTTCCATTAACCAGAATGAAACCAT 58.065 36.000 0.00 0.00 39.69 3.55
110 111 6.339587 GTTCCATTAACCAGAATGAAACCA 57.660 37.500 0.00 0.00 39.69 3.67
123 124 2.742204 GCCTCTCTCCGGTTCCATTAAC 60.742 54.545 0.00 0.00 37.36 2.01
124 125 1.485066 GCCTCTCTCCGGTTCCATTAA 59.515 52.381 0.00 0.00 0.00 1.40
125 126 1.120530 GCCTCTCTCCGGTTCCATTA 58.879 55.000 0.00 0.00 0.00 1.90
126 127 1.627297 GGCCTCTCTCCGGTTCCATT 61.627 60.000 0.00 0.00 0.00 3.16
127 128 2.066999 GGCCTCTCTCCGGTTCCAT 61.067 63.158 0.00 0.00 0.00 3.41
128 129 2.683933 GGCCTCTCTCCGGTTCCA 60.684 66.667 0.00 0.00 0.00 3.53
129 130 2.364448 AGGCCTCTCTCCGGTTCC 60.364 66.667 0.00 0.00 0.00 3.62
130 131 2.428085 GGAGGCCTCTCTCCGGTTC 61.428 68.421 31.36 8.41 43.19 3.62
131 132 2.364448 GGAGGCCTCTCTCCGGTT 60.364 66.667 31.36 0.00 43.19 4.44
136 137 1.494960 AGAACATGGAGGCCTCTCTC 58.505 55.000 31.36 19.12 39.86 3.20
137 138 1.836802 GAAGAACATGGAGGCCTCTCT 59.163 52.381 31.36 22.26 39.86 3.10
138 139 1.836802 AGAAGAACATGGAGGCCTCTC 59.163 52.381 31.36 20.37 39.25 3.20
139 140 1.963985 AGAAGAACATGGAGGCCTCT 58.036 50.000 31.36 12.27 0.00 3.69
140 141 3.914426 TTAGAAGAACATGGAGGCCTC 57.086 47.619 25.59 25.59 0.00 4.70
141 142 4.657814 TTTTAGAAGAACATGGAGGCCT 57.342 40.909 3.86 3.86 0.00 5.19
165 166 2.224621 CCATGGTCAGACTGTTCACCTT 60.225 50.000 2.57 4.43 0.00 3.50
169 170 0.692476 CCCCATGGTCAGACTGTTCA 59.308 55.000 11.73 2.87 0.00 3.18
212 213 5.938125 AGGAATGTGTAATAAAGTTGCGACT 59.062 36.000 0.00 0.00 37.87 4.18
269 277 9.511272 AACTTAGTATTTTTCTACGTTTGGGAT 57.489 29.630 0.00 0.00 29.75 3.85
271 279 9.389570 CAAACTTAGTATTTTTCTACGTTTGGG 57.610 33.333 18.46 4.09 44.43 4.12
341 352 9.821662 ATAGCGTTTTAAAAAGTGACATCTAAC 57.178 29.630 14.10 0.00 0.00 2.34
357 368 6.038356 GCTAACAGGACACTATAGCGTTTTA 58.962 40.000 0.00 0.00 34.02 1.52
402 413 3.111853 ACTTGATGCAAGACGAGTGAA 57.888 42.857 13.56 0.00 43.42 3.18
403 414 2.820059 ACTTGATGCAAGACGAGTGA 57.180 45.000 13.56 0.00 43.42 3.41
404 415 2.802247 TGAACTTGATGCAAGACGAGTG 59.198 45.455 13.56 0.00 43.42 3.51
405 416 3.111853 TGAACTTGATGCAAGACGAGT 57.888 42.857 13.56 0.00 43.42 4.18
407 418 6.552859 TTTATTGAACTTGATGCAAGACGA 57.447 33.333 13.56 7.55 43.42 4.20
421 432 4.925054 TGCATGCAGCTTCTTTTATTGAAC 59.075 37.500 18.46 0.00 45.94 3.18
436 447 6.238130 CCTCGATATTATTCTGATGCATGCAG 60.238 42.308 26.69 12.83 34.71 4.41
457 468 2.107141 GTTGAGATCCGGGCCTCG 59.893 66.667 0.84 4.41 38.88 4.63
462 473 2.789409 AAAGAAGGTTGAGATCCGGG 57.211 50.000 0.00 0.00 0.00 5.73
488 499 7.467811 GCGCATTATATTATGAAATGGAGGGAG 60.468 40.741 0.30 0.00 32.44 4.30
489 500 6.318648 GCGCATTATATTATGAAATGGAGGGA 59.681 38.462 0.30 0.00 32.44 4.20
490 501 6.460123 GGCGCATTATATTATGAAATGGAGGG 60.460 42.308 10.83 0.00 32.44 4.30
491 502 6.460123 GGGCGCATTATATTATGAAATGGAGG 60.460 42.308 10.83 0.00 32.44 4.30
492 503 6.498304 GGGCGCATTATATTATGAAATGGAG 58.502 40.000 10.83 0.00 32.44 3.86
493 504 5.065859 CGGGCGCATTATATTATGAAATGGA 59.934 40.000 10.83 0.00 32.44 3.41
494 505 5.273170 CGGGCGCATTATATTATGAAATGG 58.727 41.667 10.83 0.00 32.44 3.16
495 506 4.734854 GCGGGCGCATTATATTATGAAATG 59.265 41.667 10.83 0.00 41.49 2.32
496 507 4.495679 CGCGGGCGCATTATATTATGAAAT 60.496 41.667 10.83 0.00 42.06 2.17
497 508 3.181515 CGCGGGCGCATTATATTATGAAA 60.182 43.478 10.83 0.00 42.06 2.69
498 509 2.350192 CGCGGGCGCATTATATTATGAA 59.650 45.455 10.83 0.00 42.06 2.57
499 510 1.930503 CGCGGGCGCATTATATTATGA 59.069 47.619 10.83 0.00 42.06 2.15
500 511 2.367399 CGCGGGCGCATTATATTATG 57.633 50.000 10.83 0.00 42.06 1.90
512 523 2.527547 AATCTTGAAAAGCGCGGGCG 62.528 55.000 19.46 8.99 45.70 6.13
513 524 0.798389 GAATCTTGAAAAGCGCGGGC 60.798 55.000 17.92 17.92 45.70 6.13
514 525 0.521291 TGAATCTTGAAAAGCGCGGG 59.479 50.000 8.83 0.00 45.70 6.13
515 526 2.245096 CTTGAATCTTGAAAAGCGCGG 58.755 47.619 8.83 0.00 45.70 6.46
516 527 2.921126 ACTTGAATCTTGAAAAGCGCG 58.079 42.857 0.00 0.00 45.70 6.86
517 528 4.739716 TCAAACTTGAATCTTGAAAAGCGC 59.260 37.500 0.00 0.00 37.87 5.92
518 529 6.183359 CGATCAAACTTGAATCTTGAAAAGCG 60.183 38.462 0.00 0.00 41.69 4.68
519 530 6.638468 ACGATCAAACTTGAATCTTGAAAAGC 59.362 34.615 0.00 0.00 41.69 3.51
520 531 9.663904 TTACGATCAAACTTGAATCTTGAAAAG 57.336 29.630 0.00 0.00 42.67 2.27
532 543 9.257865 CGGTAGTTAAATTTACGATCAAACTTG 57.742 33.333 0.00 0.00 0.00 3.16
533 544 9.206870 TCGGTAGTTAAATTTACGATCAAACTT 57.793 29.630 0.00 0.00 0.00 2.66
534 545 8.761575 TCGGTAGTTAAATTTACGATCAAACT 57.238 30.769 0.00 1.75 0.00 2.66
535 546 8.863049 TCTCGGTAGTTAAATTTACGATCAAAC 58.137 33.333 7.92 0.30 0.00 2.93
536 547 8.863049 GTCTCGGTAGTTAAATTTACGATCAAA 58.137 33.333 7.92 0.00 0.00 2.69
537 548 7.489113 GGTCTCGGTAGTTAAATTTACGATCAA 59.511 37.037 7.92 0.00 0.00 2.57
538 549 6.974622 GGTCTCGGTAGTTAAATTTACGATCA 59.025 38.462 7.92 0.00 0.00 2.92
539 550 7.199078 AGGTCTCGGTAGTTAAATTTACGATC 58.801 38.462 7.92 5.64 0.00 3.69
540 551 7.105241 AGGTCTCGGTAGTTAAATTTACGAT 57.895 36.000 7.92 0.00 0.00 3.73
541 552 6.515272 AGGTCTCGGTAGTTAAATTTACGA 57.485 37.500 0.00 2.84 0.00 3.43
542 553 7.430502 CAGTAGGTCTCGGTAGTTAAATTTACG 59.569 40.741 0.00 0.00 0.00 3.18
543 554 8.246871 ACAGTAGGTCTCGGTAGTTAAATTTAC 58.753 37.037 0.00 0.00 0.00 2.01
544 555 8.246180 CACAGTAGGTCTCGGTAGTTAAATTTA 58.754 37.037 0.00 0.00 0.00 1.40
545 556 7.095270 CACAGTAGGTCTCGGTAGTTAAATTT 58.905 38.462 0.00 0.00 0.00 1.82
546 557 6.350780 CCACAGTAGGTCTCGGTAGTTAAATT 60.351 42.308 0.00 0.00 0.00 1.82
547 558 5.126707 CCACAGTAGGTCTCGGTAGTTAAAT 59.873 44.000 0.00 0.00 0.00 1.40
548 559 4.460382 CCACAGTAGGTCTCGGTAGTTAAA 59.540 45.833 0.00 0.00 0.00 1.52
549 560 4.012374 CCACAGTAGGTCTCGGTAGTTAA 58.988 47.826 0.00 0.00 0.00 2.01
550 561 3.614092 CCACAGTAGGTCTCGGTAGTTA 58.386 50.000 0.00 0.00 0.00 2.24
551 562 2.444421 CCACAGTAGGTCTCGGTAGTT 58.556 52.381 0.00 0.00 0.00 2.24
552 563 1.954258 GCCACAGTAGGTCTCGGTAGT 60.954 57.143 0.00 0.00 0.00 2.73
553 564 0.739561 GCCACAGTAGGTCTCGGTAG 59.260 60.000 0.00 0.00 0.00 3.18
554 565 1.028330 CGCCACAGTAGGTCTCGGTA 61.028 60.000 0.00 0.00 0.00 4.02
555 566 2.341101 CGCCACAGTAGGTCTCGGT 61.341 63.158 0.00 0.00 0.00 4.69
556 567 2.490217 CGCCACAGTAGGTCTCGG 59.510 66.667 0.00 0.00 0.00 4.63
557 568 2.490217 CCGCCACAGTAGGTCTCG 59.510 66.667 0.00 0.00 0.00 4.04
558 569 1.668101 CTCCCGCCACAGTAGGTCTC 61.668 65.000 0.00 0.00 0.00 3.36
559 570 1.682684 CTCCCGCCACAGTAGGTCT 60.683 63.158 0.00 0.00 0.00 3.85
560 571 2.893398 CTCCCGCCACAGTAGGTC 59.107 66.667 0.00 0.00 0.00 3.85
561 572 3.391382 GCTCCCGCCACAGTAGGT 61.391 66.667 0.00 0.00 0.00 3.08
562 573 2.463589 TTTGCTCCCGCCACAGTAGG 62.464 60.000 0.00 0.00 34.43 3.18
563 574 0.605319 TTTTGCTCCCGCCACAGTAG 60.605 55.000 0.00 0.00 34.43 2.57
564 575 0.179015 TTTTTGCTCCCGCCACAGTA 60.179 50.000 0.00 0.00 34.43 2.74
565 576 0.827507 ATTTTTGCTCCCGCCACAGT 60.828 50.000 0.00 0.00 34.43 3.55
566 577 0.318120 AATTTTTGCTCCCGCCACAG 59.682 50.000 0.00 0.00 34.43 3.66
567 578 1.621992 TAATTTTTGCTCCCGCCACA 58.378 45.000 0.00 0.00 34.43 4.17
568 579 2.959507 ATAATTTTTGCTCCCGCCAC 57.040 45.000 0.00 0.00 34.43 5.01
569 580 3.626930 AGTATAATTTTTGCTCCCGCCA 58.373 40.909 0.00 0.00 34.43 5.69
570 581 4.820173 ACTAGTATAATTTTTGCTCCCGCC 59.180 41.667 0.00 0.00 34.43 6.13
571 582 5.526111 TCACTAGTATAATTTTTGCTCCCGC 59.474 40.000 0.00 0.00 0.00 6.13
572 583 7.548196 TTCACTAGTATAATTTTTGCTCCCG 57.452 36.000 0.00 0.00 0.00 5.14
573 584 9.952188 GAATTCACTAGTATAATTTTTGCTCCC 57.048 33.333 13.68 0.36 0.00 4.30
588 599 9.653287 TGATATCGAAAAACTGAATTCACTAGT 57.347 29.630 3.38 0.00 0.00 2.57
598 609 9.226606 ACCACTAAATTGATATCGAAAAACTGA 57.773 29.630 0.00 0.00 0.00 3.41
616 627 8.631797 GGCGGGAATAAAAATTATACCACTAAA 58.368 33.333 0.00 0.00 0.00 1.85
617 628 7.041235 CGGCGGGAATAAAAATTATACCACTAA 60.041 37.037 0.00 0.00 0.00 2.24
618 629 6.427547 CGGCGGGAATAAAAATTATACCACTA 59.572 38.462 0.00 0.00 0.00 2.74
619 630 5.239963 CGGCGGGAATAAAAATTATACCACT 59.760 40.000 0.00 0.00 0.00 4.00
620 631 5.454520 CGGCGGGAATAAAAATTATACCAC 58.545 41.667 0.00 0.00 0.00 4.16
621 632 4.023021 GCGGCGGGAATAAAAATTATACCA 60.023 41.667 9.78 0.00 0.00 3.25
622 633 4.023021 TGCGGCGGGAATAAAAATTATACC 60.023 41.667 9.78 0.00 0.00 2.73
623 634 5.110940 TGCGGCGGGAATAAAAATTATAC 57.889 39.130 9.78 0.00 0.00 1.47
624 635 4.822896 ACTGCGGCGGGAATAAAAATTATA 59.177 37.500 14.26 0.00 0.00 0.98
625 636 3.634910 ACTGCGGCGGGAATAAAAATTAT 59.365 39.130 14.26 0.00 0.00 1.28
626 637 3.018149 ACTGCGGCGGGAATAAAAATTA 58.982 40.909 14.26 0.00 0.00 1.40
627 638 1.822371 ACTGCGGCGGGAATAAAAATT 59.178 42.857 14.26 0.00 0.00 1.82
628 639 1.404035 GACTGCGGCGGGAATAAAAAT 59.596 47.619 14.26 0.00 0.00 1.82
629 640 0.806241 GACTGCGGCGGGAATAAAAA 59.194 50.000 14.26 0.00 0.00 1.94
630 641 1.363145 CGACTGCGGCGGGAATAAAA 61.363 55.000 14.26 0.00 0.00 1.52
631 642 1.812093 CGACTGCGGCGGGAATAAA 60.812 57.895 14.26 0.00 0.00 1.40
632 643 2.202824 CGACTGCGGCGGGAATAA 60.203 61.111 14.26 0.00 0.00 1.40
642 653 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
643 654 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
644 655 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
645 656 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
646 657 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
647 658 6.857777 TTTAAATTTAACCAACGAGACCGA 57.142 33.333 10.18 0.00 39.50 4.69
648 659 7.804129 TGAATTTAAATTTAACCAACGAGACCG 59.196 33.333 14.45 0.00 42.50 4.79
649 660 9.465985 TTGAATTTAAATTTAACCAACGAGACC 57.534 29.630 14.45 0.00 0.00 3.85
662 673 9.506018 CCCAGATCCAACTTTGAATTTAAATTT 57.494 29.630 14.45 0.00 0.00 1.82
663 674 8.102676 CCCCAGATCCAACTTTGAATTTAAATT 58.897 33.333 13.24 13.24 0.00 1.82
664 675 7.457535 TCCCCAGATCCAACTTTGAATTTAAAT 59.542 33.333 0.00 0.00 0.00 1.40
665 676 6.784969 TCCCCAGATCCAACTTTGAATTTAAA 59.215 34.615 0.00 0.00 0.00 1.52
666 677 6.318913 TCCCCAGATCCAACTTTGAATTTAA 58.681 36.000 0.00 0.00 0.00 1.52
667 678 5.898120 TCCCCAGATCCAACTTTGAATTTA 58.102 37.500 0.00 0.00 0.00 1.40
668 679 4.750941 TCCCCAGATCCAACTTTGAATTT 58.249 39.130 0.00 0.00 0.00 1.82
669 680 4.347607 CTCCCCAGATCCAACTTTGAATT 58.652 43.478 0.00 0.00 0.00 2.17
670 681 3.879321 GCTCCCCAGATCCAACTTTGAAT 60.879 47.826 0.00 0.00 0.00 2.57
671 682 2.555227 GCTCCCCAGATCCAACTTTGAA 60.555 50.000 0.00 0.00 0.00 2.69
672 683 1.004745 GCTCCCCAGATCCAACTTTGA 59.995 52.381 0.00 0.00 0.00 2.69
673 684 1.467920 GCTCCCCAGATCCAACTTTG 58.532 55.000 0.00 0.00 0.00 2.77
674 685 0.035056 CGCTCCCCAGATCCAACTTT 60.035 55.000 0.00 0.00 0.00 2.66
675 686 1.201429 ACGCTCCCCAGATCCAACTT 61.201 55.000 0.00 0.00 0.00 2.66
676 687 1.613630 ACGCTCCCCAGATCCAACT 60.614 57.895 0.00 0.00 0.00 3.16
677 688 1.450312 CACGCTCCCCAGATCCAAC 60.450 63.158 0.00 0.00 0.00 3.77
678 689 2.669133 CCACGCTCCCCAGATCCAA 61.669 63.158 0.00 0.00 0.00 3.53
679 690 3.083349 CCACGCTCCCCAGATCCA 61.083 66.667 0.00 0.00 0.00 3.41
680 691 3.866582 CCCACGCTCCCCAGATCC 61.867 72.222 0.00 0.00 0.00 3.36
681 692 4.554036 GCCCACGCTCCCCAGATC 62.554 72.222 0.00 0.00 0.00 2.75
692 703 0.581529 CATAATGTACTGCGCCCACG 59.418 55.000 4.18 0.00 44.07 4.94
693 704 0.944386 CCATAATGTACTGCGCCCAC 59.056 55.000 4.18 0.00 0.00 4.61
694 705 0.833949 TCCATAATGTACTGCGCCCA 59.166 50.000 4.18 0.00 0.00 5.36
695 706 1.602377 GTTCCATAATGTACTGCGCCC 59.398 52.381 4.18 0.00 0.00 6.13
696 707 1.260561 CGTTCCATAATGTACTGCGCC 59.739 52.381 4.18 0.00 0.00 6.53
697 708 1.260561 CCGTTCCATAATGTACTGCGC 59.739 52.381 0.00 0.00 0.00 6.09
698 709 2.794910 CTCCGTTCCATAATGTACTGCG 59.205 50.000 0.00 0.00 0.00 5.18
699 710 3.131396 CCTCCGTTCCATAATGTACTGC 58.869 50.000 0.00 0.00 0.00 4.40
700 711 3.386726 TCCCTCCGTTCCATAATGTACTG 59.613 47.826 0.00 0.00 0.00 2.74
701 712 3.641906 CTCCCTCCGTTCCATAATGTACT 59.358 47.826 0.00 0.00 0.00 2.73
702 713 3.387050 ACTCCCTCCGTTCCATAATGTAC 59.613 47.826 0.00 0.00 0.00 2.90
703 714 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
704 715 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
705 716 4.528596 AGATACTCCCTCCGTTCCATAATG 59.471 45.833 0.00 0.00 0.00 1.90
706 717 4.753186 AGATACTCCCTCCGTTCCATAAT 58.247 43.478 0.00 0.00 0.00 1.28
707 718 4.194678 AGATACTCCCTCCGTTCCATAA 57.805 45.455 0.00 0.00 0.00 1.90
708 719 3.897657 AGATACTCCCTCCGTTCCATA 57.102 47.619 0.00 0.00 0.00 2.74
709 720 2.777459 AGATACTCCCTCCGTTCCAT 57.223 50.000 0.00 0.00 0.00 3.41
710 721 3.203710 TCTTAGATACTCCCTCCGTTCCA 59.796 47.826 0.00 0.00 0.00 3.53
711 722 3.830121 TCTTAGATACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
712 723 5.848833 TTTCTTAGATACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
713 724 5.897824 TGATTTCTTAGATACTCCCTCCGTT 59.102 40.000 0.00 0.00 0.00 4.44
714 725 5.302313 GTGATTTCTTAGATACTCCCTCCGT 59.698 44.000 0.00 0.00 0.00 4.69
715 726 5.279056 GGTGATTTCTTAGATACTCCCTCCG 60.279 48.000 0.00 0.00 0.00 4.63
716 727 5.841783 AGGTGATTTCTTAGATACTCCCTCC 59.158 44.000 0.00 0.00 0.00 4.30
717 728 6.987403 AGGTGATTTCTTAGATACTCCCTC 57.013 41.667 0.00 0.00 0.00 4.30
718 729 7.757242 AAAGGTGATTTCTTAGATACTCCCT 57.243 36.000 0.00 0.00 0.00 4.20
719 730 8.047310 TCAAAAGGTGATTTCTTAGATACTCCC 58.953 37.037 0.00 0.00 0.00 4.30
720 731 9.449719 TTCAAAAGGTGATTTCTTAGATACTCC 57.550 33.333 0.00 0.00 35.70 3.85
751 762 9.076596 GTGCAGGTTATAAATCACATTTTTCTC 57.923 33.333 0.00 0.00 33.82 2.87
752 763 8.806146 AGTGCAGGTTATAAATCACATTTTTCT 58.194 29.630 0.00 0.00 33.82 2.52
753 764 8.986477 AGTGCAGGTTATAAATCACATTTTTC 57.014 30.769 0.00 0.00 33.82 2.29
795 810 4.036380 GGAGACTTCAACTCTCTAGCTAGC 59.964 50.000 16.35 6.62 35.43 3.42
836 2814 2.204074 TGGGTGCTGGAAGGGCTA 60.204 61.111 0.00 0.00 0.00 3.93
868 2846 1.880027 GATTCCAAAGTCCAACGCTGT 59.120 47.619 0.00 0.00 0.00 4.40
918 2900 3.196685 AGTCCAAGCTGATCTACACCTTC 59.803 47.826 0.00 0.00 0.00 3.46
1078 3067 2.040178 GTCCGGGACTGGTATCTCATT 58.960 52.381 19.92 0.00 0.00 2.57
1179 3168 1.377725 GTATGCCAGCACAGTGCCT 60.378 57.895 22.41 6.79 46.52 4.75
1458 3456 2.243957 CGCGAACAAGGAGTGCACA 61.244 57.895 21.04 0.00 0.00 4.57
1470 3468 4.322385 AAAAGCACGGCCGCGAAC 62.322 61.111 28.58 12.47 36.85 3.95
1521 3519 0.602905 CGTCCGGGAAGAAGCAGTTT 60.603 55.000 3.68 0.00 0.00 2.66
1602 3600 2.489073 GGGGAAGATGGTGAACACAACT 60.489 50.000 7.25 0.73 0.00 3.16
1626 3624 4.270008 TGAATCCGATTCCCTTCCTTTTC 58.730 43.478 16.82 0.00 38.50 2.29
1802 3906 5.551305 TGACGACCCATCATCTATTCATT 57.449 39.130 0.00 0.00 0.00 2.57
1957 4103 5.370880 AGCTACTCATCCAGGGACAATTAAT 59.629 40.000 0.00 0.00 0.00 1.40
1972 4118 6.000219 TGCAAGAGAAAAGAAAGCTACTCAT 59.000 36.000 0.00 0.00 0.00 2.90
1980 4126 6.536224 ACCATGTTTTGCAAGAGAAAAGAAAG 59.464 34.615 0.00 0.00 0.00 2.62
1982 4128 5.976458 ACCATGTTTTGCAAGAGAAAAGAA 58.024 33.333 0.00 0.00 0.00 2.52
2025 4177 5.523438 TGAACAAAACAAGTAATCCCCAC 57.477 39.130 0.00 0.00 0.00 4.61
2026 4178 6.739331 AATGAACAAAACAAGTAATCCCCA 57.261 33.333 0.00 0.00 0.00 4.96
2027 4179 8.145122 TGTTAATGAACAAAACAAGTAATCCCC 58.855 33.333 0.00 0.00 42.66 4.81
2035 4187 5.600696 AGCCCTGTTAATGAACAAAACAAG 58.399 37.500 0.00 0.00 44.90 3.16
2061 4223 0.533491 TGTCGTACCGAAATCAGGGG 59.467 55.000 0.00 0.00 37.72 4.79
2079 4241 4.759693 TGTTTTCTACAAGCCACTATGGTG 59.240 41.667 1.49 1.49 35.04 4.17
2115 4277 1.425066 TGAAAGGGCCTCTCATGTGTT 59.575 47.619 5.18 0.00 0.00 3.32
2116 4278 1.067295 TGAAAGGGCCTCTCATGTGT 58.933 50.000 5.18 0.00 0.00 3.72
2117 4279 2.205022 TTGAAAGGGCCTCTCATGTG 57.795 50.000 11.03 0.00 0.00 3.21
2118 4280 2.978156 TTTGAAAGGGCCTCTCATGT 57.022 45.000 11.03 0.00 0.00 3.21
2140 4302 3.068590 CCTGTTGCCTCTCATGTGTTTTT 59.931 43.478 0.00 0.00 0.00 1.94
2141 4303 2.624838 CCTGTTGCCTCTCATGTGTTTT 59.375 45.455 0.00 0.00 0.00 2.43
2189 4351 1.493022 ACAGTGGTTTCAGCCCAAGTA 59.507 47.619 0.00 0.00 32.72 2.24
2364 5324 3.008594 TGGGTCCTTCTCGCAAAAATAGA 59.991 43.478 0.00 0.00 0.00 1.98
2534 5682 2.143122 GCTGTCATCGACAAGGTTTGA 58.857 47.619 0.00 0.00 42.26 2.69
2563 5711 2.222007 TTACGGGCACGCGTATTAAT 57.778 45.000 13.44 0.00 46.04 1.40
2591 5739 2.608261 GCGACAGCTGTAACTCTTGAGT 60.608 50.000 21.73 0.00 41.01 3.41
2620 5891 1.934589 TTGGTGTCACACTCTTCACG 58.065 50.000 8.12 0.00 34.40 4.35
2666 5937 2.963101 GGGGTGCTGAGTTTAGGTTTTT 59.037 45.455 0.00 0.00 0.00 1.94
2667 5938 2.091555 TGGGGTGCTGAGTTTAGGTTTT 60.092 45.455 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.