Multiple sequence alignment - TraesCS6B01G426800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G426800 chr6B 100.000 4061 0 0 1 4061 695443227 695439167 0.000000e+00 7500.0
1 TraesCS6B01G426800 chr6B 87.183 2130 220 28 985 3076 695783292 695785406 0.000000e+00 2372.0
2 TraesCS6B01G426800 chr6B 82.582 488 69 8 3583 4058 114966865 114967348 2.260000e-112 416.0
3 TraesCS6B01G426800 chr6B 82.241 473 70 8 3593 4054 648123717 648123248 2.940000e-106 396.0
4 TraesCS6B01G426800 chr6B 82.218 478 66 10 3593 4058 662145139 662144669 1.060000e-105 394.0
5 TraesCS6B01G426800 chr6A 91.476 4106 280 43 1 4061 603692494 603688414 0.000000e+00 5579.0
6 TraesCS6B01G426800 chr5A 82.173 2025 303 36 1018 3009 480788419 480786420 0.000000e+00 1687.0
7 TraesCS6B01G426800 chr5A 81.930 487 73 10 3583 4058 569527343 569527825 8.180000e-107 398.0
8 TraesCS6B01G426800 chr5A 81.276 486 78 9 3583 4058 311913626 311914108 8.240000e-102 381.0
9 TraesCS6B01G426800 chr3D 81.490 2080 324 32 999 3043 2881648 2879595 0.000000e+00 1652.0
10 TraesCS6B01G426800 chr3D 82.413 779 117 12 996 1757 2785062 2785837 0.000000e+00 662.0
11 TraesCS6B01G426800 chr3D 83.648 477 66 8 3593 4058 300618602 300618127 4.820000e-119 438.0
12 TraesCS6B01G426800 chr3B 81.451 2081 305 48 996 3031 2901063 2903107 0.000000e+00 1629.0
13 TraesCS6B01G426800 chr3B 84.664 476 59 7 3595 4058 707026973 707027446 2.860000e-126 462.0
14 TraesCS6B01G426800 chr3B 83.542 480 60 10 3593 4058 733081981 733081507 8.060000e-117 431.0
15 TraesCS6B01G426800 chr5B 80.723 2018 330 47 1018 3001 456460932 456462924 0.000000e+00 1517.0
16 TraesCS6B01G426800 chr5B 92.754 69 3 2 3524 3592 589664364 589664430 9.290000e-17 99.0
17 TraesCS6B01G426800 chrUn 79.544 1843 341 24 1188 3004 105377303 105375471 0.000000e+00 1282.0
18 TraesCS6B01G426800 chrUn 76.387 1334 248 39 1715 2997 77052545 77053862 0.000000e+00 656.0
19 TraesCS6B01G426800 chrUn 82.021 584 90 9 1023 1595 76986382 76986961 2.190000e-132 483.0
20 TraesCS6B01G426800 chrUn 82.021 584 90 9 1023 1595 341414477 341415056 2.190000e-132 483.0
21 TraesCS6B01G426800 chrUn 81.985 544 83 9 1023 1555 440995515 440996054 8.010000e-122 448.0
22 TraesCS6B01G426800 chrUn 82.600 477 70 10 3593 4058 33187741 33187267 3.780000e-110 409.0
23 TraesCS6B01G426800 chr5D 78.128 2094 376 57 1016 3056 380190982 380193046 0.000000e+00 1254.0
24 TraesCS6B01G426800 chr5D 83.738 412 52 9 3663 4061 109821118 109820709 3.830000e-100 375.0
25 TraesCS6B01G426800 chr2A 72.576 1619 345 68 1419 2986 9951329 9949759 4.820000e-119 438.0
26 TraesCS6B01G426800 chr2A 82.427 478 70 4 3593 4058 36005318 36004843 4.890000e-109 405.0
27 TraesCS6B01G426800 chr2A 75.311 482 89 24 3583 4057 207643051 207643509 1.910000e-48 204.0
28 TraesCS6B01G426800 chr2A 94.203 69 3 1 3524 3592 646627039 646626972 2.000000e-18 104.0
29 TraesCS6B01G426800 chr2A 85.542 83 12 0 2525 2607 10382786 10382704 2.010000e-13 87.9
30 TraesCS6B01G426800 chr7B 83.093 485 66 8 3583 4055 725856492 725856972 1.040000e-115 427.0
31 TraesCS6B01G426800 chr4A 82.582 488 69 8 3583 4058 575005163 575005646 2.260000e-112 416.0
32 TraesCS6B01G426800 chr4A 91.549 71 5 1 3522 3592 578378871 578378940 3.340000e-16 97.1
33 TraesCS6B01G426800 chr4A 90.411 73 6 1 3520 3592 137523227 137523156 1.200000e-15 95.3
34 TraesCS6B01G426800 chr7D 82.645 484 63 14 3593 4061 164642147 164641670 3.780000e-110 409.0
35 TraesCS6B01G426800 chr7D 90.667 75 5 2 3519 3592 475155403 475155330 9.290000e-17 99.0
36 TraesCS6B01G426800 chr7D 89.796 49 5 0 1716 1764 616562815 616562767 3.390000e-06 63.9
37 TraesCS6B01G426800 chr7A 77.904 353 58 17 3593 3943 696202546 696202212 6.880000e-48 202.0
38 TraesCS6B01G426800 chr7A 86.364 66 9 0 1716 1781 709550908 709550843 5.630000e-09 73.1
39 TraesCS6B01G426800 chr6D 91.549 71 5 1 3523 3592 454064137 454064207 3.340000e-16 97.1
40 TraesCS6B01G426800 chr3A 89.474 76 7 1 3518 3592 715146559 715146484 1.200000e-15 95.3
41 TraesCS6B01G426800 chr1A 87.952 83 7 3 3513 3592 554783422 554783340 1.200000e-15 95.3
42 TraesCS6B01G426800 chr2B 83.516 91 14 1 2525 2614 13479868 13479778 2.600000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G426800 chr6B 695439167 695443227 4060 True 7500 7500 100.000 1 4061 1 chr6B.!!$R3 4060
1 TraesCS6B01G426800 chr6B 695783292 695785406 2114 False 2372 2372 87.183 985 3076 1 chr6B.!!$F2 2091
2 TraesCS6B01G426800 chr6A 603688414 603692494 4080 True 5579 5579 91.476 1 4061 1 chr6A.!!$R1 4060
3 TraesCS6B01G426800 chr5A 480786420 480788419 1999 True 1687 1687 82.173 1018 3009 1 chr5A.!!$R1 1991
4 TraesCS6B01G426800 chr3D 2879595 2881648 2053 True 1652 1652 81.490 999 3043 1 chr3D.!!$R1 2044
5 TraesCS6B01G426800 chr3D 2785062 2785837 775 False 662 662 82.413 996 1757 1 chr3D.!!$F1 761
6 TraesCS6B01G426800 chr3B 2901063 2903107 2044 False 1629 1629 81.451 996 3031 1 chr3B.!!$F1 2035
7 TraesCS6B01G426800 chr5B 456460932 456462924 1992 False 1517 1517 80.723 1018 3001 1 chr5B.!!$F1 1983
8 TraesCS6B01G426800 chrUn 105375471 105377303 1832 True 1282 1282 79.544 1188 3004 1 chrUn.!!$R2 1816
9 TraesCS6B01G426800 chrUn 77052545 77053862 1317 False 656 656 76.387 1715 2997 1 chrUn.!!$F2 1282
10 TraesCS6B01G426800 chrUn 76986382 76986961 579 False 483 483 82.021 1023 1595 1 chrUn.!!$F1 572
11 TraesCS6B01G426800 chrUn 341414477 341415056 579 False 483 483 82.021 1023 1595 1 chrUn.!!$F3 572
12 TraesCS6B01G426800 chrUn 440995515 440996054 539 False 448 448 81.985 1023 1555 1 chrUn.!!$F4 532
13 TraesCS6B01G426800 chr5D 380190982 380193046 2064 False 1254 1254 78.128 1016 3056 1 chr5D.!!$F1 2040
14 TraesCS6B01G426800 chr2A 9949759 9951329 1570 True 438 438 72.576 1419 2986 1 chr2A.!!$R1 1567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.037697 ACTATGTCCGCGCAAGACAA 60.038 50.0 27.75 17.88 46.67 3.18 F
929 944 0.179225 CAATTTTCGTGGAGCGGACG 60.179 55.0 0.00 0.00 41.72 4.79 F
994 1009 0.390472 GCCGGAACAGAACAGGAGAG 60.390 60.0 5.05 0.00 0.00 3.20 F
2555 2672 0.321653 ATGTTCCTCCTTGTGGCGAC 60.322 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1728 0.251297 CAATGGCCAGAACTCCACCA 60.251 55.000 13.05 0.0 34.81 4.17 R
2555 2672 1.153369 CCTGGTAGCATGTCGGGTG 60.153 63.158 0.00 0.0 0.00 4.61 R
2967 3112 0.111061 AGTGTTCTGCCATGAGCCAA 59.889 50.000 0.00 0.0 42.71 4.52 R
3717 3871 0.037326 ACGCGCTTCTCTTCATTGGA 60.037 50.000 5.73 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.374184 AGGTCAATCAGAGTCTCGAGG 58.626 52.381 13.56 0.00 0.00 4.63
33 34 1.153369 TCGAGGGCTACTGCATTGC 60.153 57.895 0.46 0.46 41.91 3.56
44 45 1.269726 ACTGCATTGCCGTTTTGGAAG 60.270 47.619 6.12 0.00 42.00 3.46
64 65 8.391075 TGGAAGTTAAAATGACAACTCCTAAG 57.609 34.615 0.00 0.00 33.92 2.18
106 107 0.413832 TGGCCAGACCCTCTAGAGTT 59.586 55.000 18.42 4.93 37.83 3.01
110 111 1.751924 CCAGACCCTCTAGAGTTTCGG 59.248 57.143 18.42 14.03 0.00 4.30
111 112 1.751924 CAGACCCTCTAGAGTTTCGGG 59.248 57.143 18.42 14.80 40.79 5.14
135 136 0.037697 ACTATGTCCGCGCAAGACAA 60.038 50.000 27.75 17.88 46.67 3.18
161 162 7.176690 ACACAATCCGGAAATTTAAAGATGACT 59.823 33.333 9.01 0.00 0.00 3.41
171 172 4.801330 TTAAAGATGACTCTCGAGCCAA 57.199 40.909 7.81 0.00 0.00 4.52
182 183 4.065110 GAGCCAACCTTGCTCGTT 57.935 55.556 0.00 0.00 45.05 3.85
185 186 2.084546 GAGCCAACCTTGCTCGTTTAT 58.915 47.619 0.00 0.00 45.05 1.40
199 200 3.139850 TCGTTTATCTAGAGGCTCGAGG 58.860 50.000 22.10 10.68 0.00 4.63
200 201 3.139850 CGTTTATCTAGAGGCTCGAGGA 58.860 50.000 22.10 15.14 0.00 3.71
212 213 4.139038 AGGCTCGAGGATTACTAGACTTC 58.861 47.826 15.58 0.00 0.00 3.01
262 263 4.314740 AGAGAACGCCAGATAGATTCAC 57.685 45.455 0.00 0.00 0.00 3.18
284 285 1.187567 AACCAACCCGTAGTAGCCGT 61.188 55.000 0.00 0.00 0.00 5.68
285 286 0.323360 ACCAACCCGTAGTAGCCGTA 60.323 55.000 0.00 0.00 0.00 4.02
434 435 8.316640 AGTATTTCACTTGACTGAAAGATGAC 57.683 34.615 1.30 0.00 42.13 3.06
552 561 6.972328 GCAAGTTTGTCTAAAAGAATGTGTCA 59.028 34.615 0.00 0.00 0.00 3.58
589 598 6.549912 AAAGAAAGAAAAGGCATGCATTTC 57.450 33.333 28.39 27.95 34.14 2.17
591 600 6.594788 AGAAAGAAAAGGCATGCATTTCTA 57.405 33.333 33.03 0.00 41.28 2.10
596 605 3.976793 AAGGCATGCATTTCTATCGTG 57.023 42.857 21.36 0.00 0.00 4.35
619 628 4.714308 GGAGAGAGGAGAAAGAATGGAAGA 59.286 45.833 0.00 0.00 0.00 2.87
650 659 4.919206 TGCAATTATCATTTGGCGTGTAG 58.081 39.130 0.00 0.00 0.00 2.74
651 660 4.397730 TGCAATTATCATTTGGCGTGTAGT 59.602 37.500 0.00 0.00 0.00 2.73
652 661 5.586643 TGCAATTATCATTTGGCGTGTAGTA 59.413 36.000 0.00 0.00 0.00 1.82
674 683 4.277476 ACTATGTTGAGTGGAGAGAGAGG 58.723 47.826 0.00 0.00 0.00 3.69
721 736 4.369182 GGATCCACGTACGAAGATCAAAT 58.631 43.478 32.62 14.38 37.46 2.32
786 801 3.430042 ACCGTAAGTCTGGAGTACTCA 57.570 47.619 23.91 9.61 0.00 3.41
805 820 1.038130 AGCTAGGTACTGACGGCAGG 61.038 60.000 24.99 4.14 46.60 4.85
850 865 2.014857 CTAGATAGTGGCGCCGCTATA 58.985 52.381 45.95 34.94 46.10 1.31
858 873 1.591594 GCGCCGCTATAGAAGTGCA 60.592 57.895 18.02 0.00 34.14 4.57
893 908 4.090588 TGGTTCGGGATGCCGGTC 62.091 66.667 26.34 17.64 0.00 4.79
907 922 2.769663 TGCCGGTCTGTATACTCCATTT 59.230 45.455 1.90 0.00 0.00 2.32
908 923 3.181469 TGCCGGTCTGTATACTCCATTTC 60.181 47.826 1.90 0.00 0.00 2.17
909 924 3.639538 CCGGTCTGTATACTCCATTTCG 58.360 50.000 4.17 0.06 0.00 3.46
915 930 6.038271 GGTCTGTATACTCCATTTCGCAATTT 59.962 38.462 4.17 0.00 0.00 1.82
917 932 7.640240 GTCTGTATACTCCATTTCGCAATTTTC 59.360 37.037 4.17 0.00 0.00 2.29
924 939 2.044888 TTTCGCAATTTTCGTGGAGC 57.955 45.000 0.00 0.00 0.00 4.70
929 944 0.179225 CAATTTTCGTGGAGCGGACG 60.179 55.000 0.00 0.00 41.72 4.79
933 948 1.518056 TTTCGTGGAGCGGACGTAGT 61.518 55.000 0.00 0.00 42.02 2.73
955 970 4.713824 TTAGCTTAGCGACACTGTACAT 57.286 40.909 0.00 0.00 0.00 2.29
994 1009 0.390472 GCCGGAACAGAACAGGAGAG 60.390 60.000 5.05 0.00 0.00 3.20
1004 1019 2.307098 AGAACAGGAGAGTCCAAATGGG 59.693 50.000 0.00 0.00 39.61 4.00
1075 1093 4.704103 TCAGCCTCGGCCTCCAGT 62.704 66.667 0.00 0.00 43.17 4.00
1449 1468 2.341176 GGTGCGGTCAAGTACGGT 59.659 61.111 0.00 0.00 0.00 4.83
1523 1548 1.109323 AAGAAGCAACCACCTGCCAC 61.109 55.000 0.00 0.00 43.73 5.01
1658 1686 1.872679 GTCCGGTGATCGAAGACGC 60.873 63.158 0.00 0.00 42.51 5.19
1685 1728 2.047274 CGCCAAGATGGTGGACGT 60.047 61.111 1.97 0.00 44.04 4.34
1832 1893 0.723981 GCCTCGCTGCTTCTGTTTAG 59.276 55.000 0.00 0.00 0.00 1.85
2258 2353 2.124151 GGCCATTGAGATGCCCGT 60.124 61.111 0.00 0.00 31.67 5.28
2259 2354 1.148273 GGCCATTGAGATGCCCGTA 59.852 57.895 0.00 0.00 31.67 4.02
2274 2369 1.670811 CCCGTACATGTGAAGGATTGC 59.329 52.381 9.11 0.00 0.00 3.56
2283 2378 4.356405 TGTGAAGGATTGCATATCCGAT 57.644 40.909 17.02 12.44 42.87 4.18
2296 2391 5.467735 TGCATATCCGATCACATGAAAAGAG 59.532 40.000 0.00 0.00 0.00 2.85
2376 2486 3.433740 AACCACTGGTTCTCAGGAAACTC 60.434 47.826 7.72 0.00 43.05 3.01
2555 2672 0.321653 ATGTTCCTCCTTGTGGCGAC 60.322 55.000 0.00 0.00 0.00 5.19
2592 2709 1.276622 GCCTCTCCCAGAACAGGTTA 58.723 55.000 0.00 0.00 0.00 2.85
2600 2717 5.724370 TCTCCCAGAACAGGTTATATCAACA 59.276 40.000 0.00 0.00 0.00 3.33
2942 3080 1.449246 ATGCCGAGAAGCTCAGCAC 60.449 57.895 7.43 0.00 44.96 4.40
2943 3081 2.817396 GCCGAGAAGCTCAGCACC 60.817 66.667 0.00 0.00 34.40 5.01
2967 3112 2.810400 CGGTGAGTTGACAACCATCCTT 60.810 50.000 14.72 0.00 0.00 3.36
2991 3136 3.539604 GCTCATGGCAGAACACTTCTAT 58.460 45.455 0.00 0.00 38.11 1.98
3079 3227 1.098050 GGCAGGGACATGATGACAAC 58.902 55.000 0.00 0.00 0.00 3.32
3081 3229 2.440409 GCAGGGACATGATGACAACTT 58.560 47.619 0.00 0.00 0.00 2.66
3088 3236 5.048991 GGGACATGATGACAACTTTAACGTT 60.049 40.000 5.88 5.88 0.00 3.99
3090 3238 7.308109 GGGACATGATGACAACTTTAACGTTTA 60.308 37.037 5.91 0.00 0.00 2.01
3092 3240 9.262472 GACATGATGACAACTTTAACGTTTATC 57.738 33.333 5.91 1.74 0.00 1.75
3093 3241 8.779303 ACATGATGACAACTTTAACGTTTATCA 58.221 29.630 5.91 13.67 0.00 2.15
3095 3243 7.577979 TGATGACAACTTTAACGTTTATCACC 58.422 34.615 5.91 3.23 0.00 4.02
3096 3244 7.442969 TGATGACAACTTTAACGTTTATCACCT 59.557 33.333 5.91 0.00 0.00 4.00
3097 3245 7.556733 TGACAACTTTAACGTTTATCACCTT 57.443 32.000 5.91 0.00 0.00 3.50
3098 3246 7.987649 TGACAACTTTAACGTTTATCACCTTT 58.012 30.769 5.91 0.00 0.00 3.11
3100 3248 8.845942 ACAACTTTAACGTTTATCACCTTTTC 57.154 30.769 5.91 0.00 0.00 2.29
3133 3281 9.941325 TTATTGATTGAAGCCATGTAAATTGTT 57.059 25.926 0.00 0.00 0.00 2.83
3134 3282 7.887996 TTGATTGAAGCCATGTAAATTGTTC 57.112 32.000 0.00 0.00 0.00 3.18
3138 3286 6.418057 TGAAGCCATGTAAATTGTTCCTTT 57.582 33.333 0.00 0.00 0.00 3.11
3186 3334 9.827411 GTGAATTTTATTGACTACCAACTCTTC 57.173 33.333 0.00 0.00 37.63 2.87
3191 3339 8.833231 TTTATTGACTACCAACTCTTCTTCAG 57.167 34.615 0.00 0.00 37.63 3.02
3193 3341 5.455056 TGACTACCAACTCTTCTTCAGAC 57.545 43.478 0.00 0.00 0.00 3.51
3211 3359 3.100671 AGACACTATGAGGGTGAACTCC 58.899 50.000 0.00 0.00 38.01 3.85
3219 3367 1.474879 GAGGGTGAACTCCTCTTCTCG 59.525 57.143 9.48 0.00 45.46 4.04
3246 3394 7.340232 ACAATGTTGGTCTAATCTATTGTGCAT 59.660 33.333 0.00 0.00 36.33 3.96
3282 3430 4.694037 TCGGTACCGTATATCATCTGACAG 59.306 45.833 32.16 0.00 40.74 3.51
3283 3431 4.142665 CGGTACCGTATATCATCTGACAGG 60.143 50.000 26.39 0.00 34.35 4.00
3340 3488 4.623886 GCAAGTAGATCATGGTCCTGAACA 60.624 45.833 1.24 0.00 0.00 3.18
3342 3490 5.543507 AGTAGATCATGGTCCTGAACATC 57.456 43.478 1.24 0.00 36.41 3.06
3364 3512 6.636562 TCTCCTTGTTTCTATCGATCCTAC 57.363 41.667 0.00 0.00 0.00 3.18
3393 3541 2.639751 CTCGGCGAAGAAGTTTTGTTG 58.360 47.619 12.13 0.00 0.00 3.33
3401 3549 5.632959 CGAAGAAGTTTTGTTGTGTACCAA 58.367 37.500 0.00 0.00 0.00 3.67
3419 3567 1.002468 CAAGTTGGCTCGTTCCTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
3422 3570 1.264288 GTTGGCTCGTTCCTGTTGAAG 59.736 52.381 0.00 0.00 32.37 3.02
3431 3579 1.073722 CCTGTTGAAGCCAGCCTGA 59.926 57.895 0.00 0.00 0.00 3.86
3472 3621 2.030185 GCCTCGAGTTACAGTGAGTCAA 60.030 50.000 12.31 0.00 0.00 3.18
3479 3628 5.342525 CGAGTTACAGTGAGTCAATGTGTAC 59.657 44.000 30.86 26.12 42.61 2.90
3487 3636 2.143122 AGTCAATGTGTACGGTGCAAG 58.857 47.619 0.00 0.00 0.00 4.01
3515 3668 3.452755 TGGAACGAGTAGGTGCATATG 57.547 47.619 0.00 0.00 30.99 1.78
3555 3708 7.808672 TCTCGAGAAAACTATCGATCTATTCC 58.191 38.462 14.01 0.00 45.96 3.01
3578 3731 7.837863 TCCTCAACTATCAAGGTAGTACAAAG 58.162 38.462 2.06 0.00 33.92 2.77
3587 3740 7.828508 TCAAGGTAGTACAAAGAACACTAGA 57.171 36.000 2.06 0.00 0.00 2.43
3592 3745 8.791675 AGGTAGTACAAAGAACACTAGAAGTAC 58.208 37.037 2.06 0.00 0.00 2.73
3605 3758 0.243907 GAAGTACACTGGAGCGAGCA 59.756 55.000 0.00 0.00 0.00 4.26
3640 3793 3.384532 GTCGCCCCTCCCACGTTA 61.385 66.667 0.00 0.00 0.00 3.18
3641 3794 3.072468 TCGCCCCTCCCACGTTAG 61.072 66.667 0.00 0.00 0.00 2.34
3646 3799 2.494918 CCTCCCACGTTAGAGCCG 59.505 66.667 6.14 0.00 0.00 5.52
3649 3802 2.183555 CCCACGTTAGAGCCGGAC 59.816 66.667 5.05 0.00 0.00 4.79
3661 3814 1.336755 GAGCCGGACAAACATTGTTGT 59.663 47.619 5.05 3.80 45.52 3.32
3670 3823 6.147164 CGGACAAACATTGTTGTAGTAGACAT 59.853 38.462 2.13 0.00 45.52 3.06
3671 3824 7.298122 GGACAAACATTGTTGTAGTAGACATG 58.702 38.462 2.13 0.00 45.52 3.21
3684 3838 0.179100 AGACATGCGGGAAGTCATCG 60.179 55.000 7.59 0.00 34.80 3.84
3688 3842 2.125512 GCGGGAAGTCATCGTGCT 60.126 61.111 0.00 0.00 0.00 4.40
3693 3847 1.291132 GGAAGTCATCGTGCTAAGGC 58.709 55.000 0.00 0.00 39.26 4.35
3696 3850 1.523938 GTCATCGTGCTAAGGCCCC 60.524 63.158 0.00 0.00 37.74 5.80
3700 3854 1.136828 ATCGTGCTAAGGCCCCATAA 58.863 50.000 0.00 0.00 37.74 1.90
3708 3862 1.214305 AAGGCCCCATAAGACCAGCA 61.214 55.000 0.00 0.00 0.00 4.41
3711 3865 0.106519 GCCCCATAAGACCAGCACAT 60.107 55.000 0.00 0.00 0.00 3.21
3717 3871 4.458397 CCATAAGACCAGCACATCAGAAT 58.542 43.478 0.00 0.00 0.00 2.40
3718 3872 4.514441 CCATAAGACCAGCACATCAGAATC 59.486 45.833 0.00 0.00 0.00 2.52
3719 3873 2.706339 AGACCAGCACATCAGAATCC 57.294 50.000 0.00 0.00 0.00 3.01
3726 3891 4.202020 CCAGCACATCAGAATCCAATGAAG 60.202 45.833 0.27 0.00 0.00 3.02
3734 3899 2.941720 AGAATCCAATGAAGAGAAGCGC 59.058 45.455 0.00 0.00 0.00 5.92
3735 3900 1.293924 ATCCAATGAAGAGAAGCGCG 58.706 50.000 0.00 0.00 0.00 6.86
3736 3901 0.037326 TCCAATGAAGAGAAGCGCGT 60.037 50.000 8.43 0.00 0.00 6.01
3737 3902 0.095935 CCAATGAAGAGAAGCGCGTG 59.904 55.000 8.43 0.00 0.00 5.34
3743 3908 2.890847 AAGAGAAGCGCGTGGATCGG 62.891 60.000 8.43 0.00 40.26 4.18
3749 3914 2.417516 CGCGTGGATCGGAAGGAT 59.582 61.111 0.00 0.00 40.26 3.24
3768 3933 1.679139 TCCAACCTGCAGACAAACAG 58.321 50.000 17.39 0.00 0.00 3.16
3776 3941 3.243873 CCTGCAGACAAACAGAGTAGACA 60.244 47.826 17.39 0.00 35.90 3.41
3782 3947 6.017934 GCAGACAAACAGAGTAGACAAATGAA 60.018 38.462 0.00 0.00 0.00 2.57
3783 3948 7.571026 CAGACAAACAGAGTAGACAAATGAAG 58.429 38.462 0.00 0.00 0.00 3.02
3784 3949 6.708054 AGACAAACAGAGTAGACAAATGAAGG 59.292 38.462 0.00 0.00 0.00 3.46
3786 3951 3.944087 ACAGAGTAGACAAATGAAGGCC 58.056 45.455 0.00 0.00 0.00 5.19
3788 3953 1.666189 GAGTAGACAAATGAAGGCCGC 59.334 52.381 0.00 0.00 0.00 6.53
3792 3957 1.098050 GACAAATGAAGGCCGCATCT 58.902 50.000 13.49 0.00 0.00 2.90
3824 3989 1.794222 GAAGACAAATGCCGACCGG 59.206 57.895 0.00 0.00 38.57 5.28
3825 3990 0.672401 GAAGACAAATGCCGACCGGA 60.672 55.000 9.46 0.00 37.50 5.14
3829 3994 2.186826 CAAATGCCGACCGGATCCC 61.187 63.158 9.46 0.00 37.50 3.85
3867 4032 2.281484 GCCTTGACACGCCTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
3887 4052 0.865769 ACGACGCTTGAAACATCACC 59.134 50.000 0.00 0.00 0.00 4.02
3888 4053 0.865111 CGACGCTTGAAACATCACCA 59.135 50.000 0.00 0.00 0.00 4.17
3892 4057 2.086869 CGCTTGAAACATCACCAGGAT 58.913 47.619 0.00 0.00 36.39 3.24
3893 4058 3.270027 CGCTTGAAACATCACCAGGATA 58.730 45.455 0.00 0.00 33.95 2.59
3905 4070 1.228894 CAGGATAGGGGCTAGGCGA 60.229 63.158 10.58 0.00 0.00 5.54
3907 4072 1.985116 GGATAGGGGCTAGGCGAGG 60.985 68.421 10.58 0.00 0.00 4.63
3913 4078 2.123640 GGCTAGGCGAGGAGGACT 60.124 66.667 0.00 0.00 0.00 3.85
3914 4079 2.494530 GGCTAGGCGAGGAGGACTG 61.495 68.421 0.00 0.00 0.00 3.51
3934 4099 5.189180 ACTGTATTCCATCTTGAAGAAGCC 58.811 41.667 0.00 0.00 0.00 4.35
3953 4118 2.182030 CCACCGCCTCGTCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
3964 4129 1.153745 GTCTTCTCGAGCGTGGCAT 60.154 57.895 7.81 0.00 0.00 4.40
3983 4148 6.431852 GTGGCATAAACCCTAACAAAACTCTA 59.568 38.462 0.00 0.00 0.00 2.43
3991 4156 6.802608 ACCCTAACAAAACTCTAAAAAGCAC 58.197 36.000 0.00 0.00 0.00 4.40
3994 4159 8.626526 CCCTAACAAAACTCTAAAAAGCACTTA 58.373 33.333 0.00 0.00 0.00 2.24
4035 4200 4.843331 AGGGCCGGGATCCACCAT 62.843 66.667 15.23 6.56 41.20 3.55
4040 4205 2.111878 CGGGATCCACCATGCCTC 59.888 66.667 15.23 0.00 40.98 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.182842 GGCAATGCAGTAGCCCTCG 61.183 63.158 7.79 0.00 42.58 4.63
20 21 0.243636 AAAACGGCAATGCAGTAGCC 59.756 50.000 11.96 14.85 44.89 3.93
33 34 6.754675 AGTTGTCATTTTAACTTCCAAAACGG 59.245 34.615 0.00 0.00 33.59 4.44
64 65 4.282195 AGACTGGACCGATGATCTTTATCC 59.718 45.833 0.00 0.00 0.00 2.59
106 107 1.111116 CGGACATAGTAGGCCCCGAA 61.111 60.000 6.96 0.00 39.31 4.30
110 111 2.338984 CGCGGACATAGTAGGCCC 59.661 66.667 0.00 0.00 0.00 5.80
111 112 2.355956 GCGCGGACATAGTAGGCC 60.356 66.667 8.83 0.00 0.00 5.19
134 135 7.812669 GTCATCTTTAAATTTCCGGATTGTGTT 59.187 33.333 4.15 0.00 0.00 3.32
135 136 7.176690 AGTCATCTTTAAATTTCCGGATTGTGT 59.823 33.333 4.15 0.00 0.00 3.72
161 162 3.471620 AGCAAGGTTGGCTCGAGA 58.528 55.556 18.75 0.00 36.81 4.04
171 172 3.181474 GCCTCTAGATAAACGAGCAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
182 183 6.129414 AGTAATCCTCGAGCCTCTAGATAA 57.871 41.667 6.99 0.00 0.00 1.75
185 186 4.839550 TCTAGTAATCCTCGAGCCTCTAGA 59.160 45.833 6.99 14.67 33.01 2.43
200 201 9.377312 GCTCTTGAAATCTTGAAGTCTAGTAAT 57.623 33.333 0.00 0.00 0.00 1.89
212 213 8.027771 AGAAATAGCTTTGCTCTTGAAATCTTG 58.972 33.333 0.00 0.00 40.44 3.02
262 263 1.405121 GGCTACTACGGGTTGGTTCAG 60.405 57.143 0.00 0.00 0.00 3.02
284 285 4.141367 TGTTGAACCAACCCACAATCTCTA 60.141 41.667 7.29 0.00 42.96 2.43
285 286 3.222603 GTTGAACCAACCCACAATCTCT 58.777 45.455 0.00 0.00 38.30 3.10
337 338 0.955428 GAGTGACCTGCGCAATGGAA 60.955 55.000 21.44 7.14 0.00 3.53
456 457 7.984475 ACAAGGCCAATACTGGATATACATTA 58.016 34.615 5.01 0.00 46.92 1.90
469 470 6.340962 AGACCTTTAAAACAAGGCCAATAC 57.659 37.500 5.01 0.00 46.71 1.89
566 575 6.293698 AGAAATGCATGCCTTTTCTTTCTTT 58.706 32.000 27.32 13.52 42.16 2.52
573 582 4.736793 CACGATAGAAATGCATGCCTTTTC 59.263 41.667 24.79 24.79 37.68 2.29
589 598 4.456535 TCTTTCTCCTCTCTCCACGATAG 58.543 47.826 0.00 0.00 46.19 2.08
591 600 3.374042 TCTTTCTCCTCTCTCCACGAT 57.626 47.619 0.00 0.00 0.00 3.73
596 605 4.714308 TCTTCCATTCTTTCTCCTCTCTCC 59.286 45.833 0.00 0.00 0.00 3.71
619 628 4.617253 AATGATAATTGCATGCATGGCT 57.383 36.364 27.34 7.15 0.00 4.75
650 659 5.298276 CCTCTCTCTCCACTCAACATAGTAC 59.702 48.000 0.00 0.00 0.00 2.73
651 660 5.441500 CCTCTCTCTCCACTCAACATAGTA 58.558 45.833 0.00 0.00 0.00 1.82
652 661 4.277476 CCTCTCTCTCCACTCAACATAGT 58.723 47.826 0.00 0.00 0.00 2.12
744 759 8.204836 ACGGTTCTACATCTTCTTATGCTTAAT 58.795 33.333 0.00 0.00 0.00 1.40
745 760 7.553334 ACGGTTCTACATCTTCTTATGCTTAA 58.447 34.615 0.00 0.00 0.00 1.85
786 801 1.038130 CCTGCCGTCAGTACCTAGCT 61.038 60.000 0.00 0.00 38.66 3.32
805 820 0.250467 TGCTCCAGACAACTTGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
849 864 0.107703 CTCCGGCCAATGCACTTCTA 60.108 55.000 2.24 0.00 40.13 2.10
850 865 1.377725 CTCCGGCCAATGCACTTCT 60.378 57.895 2.24 0.00 40.13 2.85
858 873 1.613630 AGTCTGGTCTCCGGCCAAT 60.614 57.895 2.24 0.00 35.32 3.16
882 897 1.272769 GAGTATACAGACCGGCATCCC 59.727 57.143 0.00 0.00 0.00 3.85
893 908 6.628856 CGAAAATTGCGAAATGGAGTATACAG 59.371 38.462 5.50 0.00 0.00 2.74
917 932 0.168788 TAAACTACGTCCGCTCCACG 59.831 55.000 0.00 0.00 43.13 4.94
924 939 2.107178 CGCTAAGCTAAACTACGTCCG 58.893 52.381 0.00 0.00 0.00 4.79
929 944 4.483311 ACAGTGTCGCTAAGCTAAACTAC 58.517 43.478 0.00 0.00 0.00 2.73
933 948 4.508461 TGTACAGTGTCGCTAAGCTAAA 57.492 40.909 0.00 0.00 0.00 1.85
939 954 1.068125 ACGCATGTACAGTGTCGCTAA 60.068 47.619 0.00 0.00 0.00 3.09
940 955 0.524414 ACGCATGTACAGTGTCGCTA 59.476 50.000 0.00 0.00 0.00 4.26
941 956 1.008875 CACGCATGTACAGTGTCGCT 61.009 55.000 0.00 0.00 0.00 4.93
942 957 1.282248 ACACGCATGTACAGTGTCGC 61.282 55.000 12.27 0.00 44.75 5.19
943 958 1.911464 CTACACGCATGTACAGTGTCG 59.089 52.381 19.24 11.76 44.75 4.35
944 959 1.654105 GCTACACGCATGTACAGTGTC 59.346 52.381 19.24 6.31 44.75 3.67
994 1009 1.452108 CCCGAGCTCCCATTTGGAC 60.452 63.158 8.47 0.00 38.61 4.02
1004 1019 4.959596 GATCCTGCGCCCGAGCTC 62.960 72.222 4.18 2.73 38.13 4.09
1020 1035 3.308402 GGATGGACCAATTGTTCCAGAGA 60.308 47.826 26.32 6.56 38.79 3.10
1075 1093 2.052690 CGAGGAGGAAGAGGGCGAA 61.053 63.158 0.00 0.00 0.00 4.70
1449 1468 3.282745 GAGCGCCCACGTCTTCTCA 62.283 63.158 2.29 0.00 42.83 3.27
1523 1548 4.025401 GGTGAAAGTGCCCGTGCG 62.025 66.667 0.00 0.00 41.78 5.34
1533 1558 0.392998 CGTGATCCTGGGGGTGAAAG 60.393 60.000 0.00 0.00 0.00 2.62
1658 1686 0.742281 CATCTTGGCGGTGTCTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
1685 1728 0.251297 CAATGGCCAGAACTCCACCA 60.251 55.000 13.05 0.00 34.81 4.17
1832 1893 1.648467 GACGTCCTTGCCAATGAGCC 61.648 60.000 3.51 0.00 0.00 4.70
2196 2291 1.905215 CACTCATTGAGTCCCAGTCCT 59.095 52.381 16.39 0.00 41.37 3.85
2258 2353 4.996758 CGGATATGCAATCCTTCACATGTA 59.003 41.667 19.27 0.00 36.07 2.29
2259 2354 3.817084 CGGATATGCAATCCTTCACATGT 59.183 43.478 19.27 0.00 36.07 3.21
2274 2369 6.481313 ACACTCTTTTCATGTGATCGGATATG 59.519 38.462 0.00 0.00 35.83 1.78
2283 2378 7.012327 CCTTTCTTGTACACTCTTTTCATGTGA 59.988 37.037 0.00 0.00 35.83 3.58
2296 2391 3.547746 TCACAACCCCTTTCTTGTACAC 58.452 45.455 0.00 0.00 0.00 2.90
2376 2486 4.521146 AGTCTTTGAGTATGCCATGGAAG 58.479 43.478 18.40 7.60 0.00 3.46
2508 2624 3.134623 AGTTGGATATCACCTTGATCGCA 59.865 43.478 4.83 0.00 38.26 5.10
2555 2672 1.153369 CCTGGTAGCATGTCGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
2592 2709 6.515272 AGATTTTCGCAGGTTTGTTGATAT 57.485 33.333 0.00 0.00 0.00 1.63
2600 2717 5.179555 GTCTTGACTAGATTTTCGCAGGTTT 59.820 40.000 0.00 0.00 34.79 3.27
2827 2959 2.417933 CAGCCGTTCCATCTTTCTCTTG 59.582 50.000 0.00 0.00 0.00 3.02
2942 3080 2.280524 TTGTCAACTCACCGCCGG 60.281 61.111 0.00 0.00 0.00 6.13
2943 3081 2.604174 GGTTGTCAACTCACCGCCG 61.604 63.158 15.17 0.00 0.00 6.46
2967 3112 0.111061 AGTGTTCTGCCATGAGCCAA 59.889 50.000 0.00 0.00 42.71 4.52
2991 3136 8.167392 TGGATAAGTTCCTCCAAATAAAGTTGA 58.833 33.333 4.93 0.00 45.68 3.18
3107 3255 9.941325 AACAATTTACATGGCTTCAATCAATAA 57.059 25.926 0.00 0.00 0.00 1.40
3108 3256 9.585099 GAACAATTTACATGGCTTCAATCAATA 57.415 29.630 0.00 0.00 0.00 1.90
3109 3257 7.550196 GGAACAATTTACATGGCTTCAATCAAT 59.450 33.333 0.00 0.00 0.00 2.57
3133 3281 3.006967 CCTTCAAGAACCGAGAGAAAGGA 59.993 47.826 0.00 0.00 0.00 3.36
3134 3282 3.330267 CCTTCAAGAACCGAGAGAAAGG 58.670 50.000 0.00 0.00 0.00 3.11
3138 3286 0.608640 GGCCTTCAAGAACCGAGAGA 59.391 55.000 0.00 0.00 0.00 3.10
3186 3334 4.221703 AGTTCACCCTCATAGTGTCTGAAG 59.778 45.833 0.00 0.00 36.58 3.02
3191 3339 3.100671 AGGAGTTCACCCTCATAGTGTC 58.899 50.000 0.00 0.00 36.58 3.67
3211 3359 3.919216 AGACCAACATTGTCGAGAAGAG 58.081 45.455 0.22 0.00 0.00 2.85
3219 3367 7.148255 TGCACAATAGATTAGACCAACATTGTC 60.148 37.037 0.00 0.00 33.98 3.18
3246 3394 1.378911 TACCGAGCTTAGGTGCGGA 60.379 57.895 21.87 2.49 46.29 5.54
3282 3430 6.535508 GCCGTTCAATTAGTCCTCATATATCC 59.464 42.308 0.00 0.00 0.00 2.59
3283 3431 7.063544 GTGCCGTTCAATTAGTCCTCATATATC 59.936 40.741 0.00 0.00 0.00 1.63
3311 3459 2.573462 ACCATGATCTACTTGCACCTGT 59.427 45.455 0.00 0.00 0.00 4.00
3393 3541 1.529865 GAACGAGCCAACTTGGTACAC 59.470 52.381 9.63 0.00 40.46 2.90
3401 3549 0.468226 TCAACAGGAACGAGCCAACT 59.532 50.000 0.00 0.00 0.00 3.16
3419 3567 4.790765 AAATAAACTTCAGGCTGGCTTC 57.209 40.909 15.73 0.00 0.00 3.86
3472 3621 3.262420 GAATCTCTTGCACCGTACACAT 58.738 45.455 0.00 0.00 0.00 3.21
3479 3628 2.028420 TCCATGAATCTCTTGCACCG 57.972 50.000 0.00 0.00 0.00 4.94
3487 3636 4.363999 CACCTACTCGTTCCATGAATCTC 58.636 47.826 0.00 0.00 0.00 2.75
3531 3684 7.812648 AGGAATAGATCGATAGTTTTCTCGAG 58.187 38.462 5.93 5.93 45.96 4.04
3532 3685 7.444487 TGAGGAATAGATCGATAGTTTTCTCGA 59.556 37.037 0.00 0.00 46.71 4.04
3543 3696 7.453126 ACCTTGATAGTTGAGGAATAGATCGAT 59.547 37.037 0.00 0.00 34.61 3.59
3546 3699 9.084533 ACTACCTTGATAGTTGAGGAATAGATC 57.915 37.037 0.00 0.00 30.99 2.75
3555 3708 9.141400 GTTCTTTGTACTACCTTGATAGTTGAG 57.859 37.037 0.00 0.00 36.74 3.02
3567 3720 8.571336 TGTACTTCTAGTGTTCTTTGTACTACC 58.429 37.037 0.00 0.00 32.76 3.18
3578 3731 4.487019 GCTCCAGTGTACTTCTAGTGTTC 58.513 47.826 0.00 0.00 0.00 3.18
3587 3740 0.244994 CTGCTCGCTCCAGTGTACTT 59.755 55.000 0.00 0.00 0.00 2.24
3592 3745 1.447489 CCTTCTGCTCGCTCCAGTG 60.447 63.158 0.00 0.00 0.00 3.66
3623 3776 3.366739 CTAACGTGGGAGGGGCGAC 62.367 68.421 0.00 0.00 0.00 5.19
3627 3780 2.732619 GGCTCTAACGTGGGAGGGG 61.733 68.421 16.34 2.62 0.00 4.79
3635 3788 0.390124 TGTTTGTCCGGCTCTAACGT 59.610 50.000 0.00 0.00 0.00 3.99
3639 3792 2.811431 CAACAATGTTTGTCCGGCTCTA 59.189 45.455 0.00 0.00 44.59 2.43
3640 3793 1.608590 CAACAATGTTTGTCCGGCTCT 59.391 47.619 0.00 0.00 44.59 4.09
3641 3794 1.336755 ACAACAATGTTTGTCCGGCTC 59.663 47.619 0.00 0.00 44.59 4.70
3646 3799 6.854496 TGTCTACTACAACAATGTTTGTCC 57.146 37.500 0.00 0.00 44.59 4.02
3649 3802 5.790003 CGCATGTCTACTACAACAATGTTTG 59.210 40.000 0.00 0.00 42.70 2.93
3661 3814 2.730382 TGACTTCCCGCATGTCTACTA 58.270 47.619 0.00 0.00 31.64 1.82
3670 3823 1.600511 TAGCACGATGACTTCCCGCA 61.601 55.000 0.00 0.00 0.00 5.69
3671 3824 0.459585 TTAGCACGATGACTTCCCGC 60.460 55.000 0.00 0.00 0.00 6.13
3684 3838 1.477014 GGTCTTATGGGGCCTTAGCAC 60.477 57.143 0.84 0.00 43.97 4.40
3688 3842 0.843984 GCTGGTCTTATGGGGCCTTA 59.156 55.000 0.84 0.00 0.00 2.69
3693 3847 1.212688 TGATGTGCTGGTCTTATGGGG 59.787 52.381 0.00 0.00 0.00 4.96
3696 3850 4.514441 GGATTCTGATGTGCTGGTCTTATG 59.486 45.833 0.00 0.00 0.00 1.90
3700 3854 1.911357 TGGATTCTGATGTGCTGGTCT 59.089 47.619 0.00 0.00 0.00 3.85
3708 3862 5.589452 GCTTCTCTTCATTGGATTCTGATGT 59.411 40.000 0.00 0.00 0.00 3.06
3711 3865 4.186926 CGCTTCTCTTCATTGGATTCTGA 58.813 43.478 0.00 0.00 0.00 3.27
3717 3871 0.037326 ACGCGCTTCTCTTCATTGGA 60.037 50.000 5.73 0.00 0.00 3.53
3718 3872 0.095935 CACGCGCTTCTCTTCATTGG 59.904 55.000 5.73 0.00 0.00 3.16
3719 3873 0.095935 CCACGCGCTTCTCTTCATTG 59.904 55.000 5.73 0.00 0.00 2.82
3726 3891 2.884087 TTCCGATCCACGCGCTTCTC 62.884 60.000 5.73 0.00 41.07 2.87
3743 3908 1.003580 TGTCTGCAGGTTGGATCCTTC 59.996 52.381 15.13 5.77 35.37 3.46
3749 3914 1.211703 TCTGTTTGTCTGCAGGTTGGA 59.788 47.619 15.13 1.02 33.81 3.53
3768 3933 1.666189 GCGGCCTTCATTTGTCTACTC 59.334 52.381 0.00 0.00 0.00 2.59
3776 3941 2.565841 GACTAGATGCGGCCTTCATTT 58.434 47.619 0.00 2.11 0.00 2.32
3782 3947 1.528292 GATCCGACTAGATGCGGCCT 61.528 60.000 15.26 7.80 46.79 5.19
3783 3948 1.080434 GATCCGACTAGATGCGGCC 60.080 63.158 15.26 0.00 46.79 6.13
3784 3949 1.080434 GGATCCGACTAGATGCGGC 60.080 63.158 15.26 0.00 46.79 6.53
3786 3951 0.039074 GGTGGATCCGACTAGATGCG 60.039 60.000 7.39 0.00 37.41 4.73
3806 3971 0.672401 TCCGGTCGGCATTTGTCTTC 60.672 55.000 0.00 0.00 34.68 2.87
3832 3997 0.248702 GCTTGTCTCCGACGGATCTC 60.249 60.000 18.71 11.14 34.95 2.75
3850 4015 1.896660 TTGGAAGGCGTGTCAAGGC 60.897 57.895 4.08 4.08 36.44 4.35
3855 4020 2.654912 CGTCGTTGGAAGGCGTGTC 61.655 63.158 0.00 0.00 0.00 3.67
3867 4032 1.263217 GGTGATGTTTCAAGCGTCGTT 59.737 47.619 0.00 0.00 32.48 3.85
3887 4052 1.228894 TCGCCTAGCCCCTATCCTG 60.229 63.158 0.00 0.00 0.00 3.86
3888 4053 1.077625 CTCGCCTAGCCCCTATCCT 59.922 63.158 0.00 0.00 0.00 3.24
3892 4057 2.521479 CTCCTCGCCTAGCCCCTA 59.479 66.667 0.00 0.00 0.00 3.53
3893 4058 4.548513 CCTCCTCGCCTAGCCCCT 62.549 72.222 0.00 0.00 0.00 4.79
3905 4070 4.624913 TCAAGATGGAATACAGTCCTCCT 58.375 43.478 0.00 0.00 38.62 3.69
3907 4072 6.227298 TCTTCAAGATGGAATACAGTCCTC 57.773 41.667 0.00 0.00 38.62 3.71
3913 4078 4.191544 CGGCTTCTTCAAGATGGAATACA 58.808 43.478 2.65 0.00 0.00 2.29
3914 4079 3.002759 GCGGCTTCTTCAAGATGGAATAC 59.997 47.826 2.65 0.00 0.00 1.89
3951 4116 1.429148 GGGTTTATGCCACGCTCGAG 61.429 60.000 8.45 8.45 0.00 4.04
3953 4118 0.179094 TAGGGTTTATGCCACGCTCG 60.179 55.000 0.00 0.00 38.34 5.03
3958 4123 5.243060 AGAGTTTTGTTAGGGTTTATGCCAC 59.757 40.000 0.00 0.00 0.00 5.01
3964 4129 8.968969 TGCTTTTTAGAGTTTTGTTAGGGTTTA 58.031 29.630 0.00 0.00 0.00 2.01
3983 4148 7.170393 AGGACTCTGTTTTTAAGTGCTTTTT 57.830 32.000 0.00 0.00 38.37 1.94
3991 4156 3.753797 GGCAGGAGGACTCTGTTTTTAAG 59.246 47.826 0.00 0.00 34.89 1.85
3994 4159 1.543429 CGGCAGGAGGACTCTGTTTTT 60.543 52.381 0.00 0.00 34.89 1.94
4000 4165 4.704103 TGCCGGCAGGAGGACTCT 62.704 66.667 29.03 0.00 41.02 3.24
4034 4199 0.920763 TCCTTGGACCATGGAGGCAT 60.921 55.000 22.26 0.00 43.14 4.40
4035 4200 1.541118 TCCTTGGACCATGGAGGCA 60.541 57.895 22.26 3.52 43.14 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.