Multiple sequence alignment - TraesCS6B01G425400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G425400 chr6B 100.000 2327 0 0 552 2878 694345481 694347807 0.000000e+00 4298
1 TraesCS6B01G425400 chr6B 100.000 171 0 0 1 171 694344930 694345100 1.660000e-82 316
2 TraesCS6B01G425400 chr6D 91.140 1535 93 21 552 2056 456545906 456547427 0.000000e+00 2041
3 TraesCS6B01G425400 chr6D 87.791 344 26 7 2347 2689 456547496 456547824 3.480000e-104 388
4 TraesCS6B01G425400 chr6D 85.106 141 21 0 2737 2877 78085604 78085464 8.310000e-31 145
5 TraesCS6B01G425400 chr6A 88.507 1514 142 16 557 2056 603271456 603272951 0.000000e+00 1803
6 TraesCS6B01G425400 chr6A 88.393 448 40 3 2236 2682 603272944 603273380 1.960000e-146 529
7 TraesCS6B01G425400 chr2B 91.667 180 9 2 2056 2234 730639760 730639934 7.970000e-61 244
8 TraesCS6B01G425400 chr2B 81.200 250 46 1 2242 2491 23288682 23288930 1.750000e-47 200
9 TraesCS6B01G425400 chr2B 87.050 139 18 0 2740 2878 741736053 741735915 1.070000e-34 158
10 TraesCS6B01G425400 chr2B 84.667 150 23 0 2729 2878 775437609 775437758 1.790000e-32 150
11 TraesCS6B01G425400 chr5D 91.765 170 11 2 2066 2234 549637454 549637621 1.720000e-57 233
12 TraesCS6B01G425400 chr5D 86.806 144 18 1 2735 2878 278469040 278469182 2.970000e-35 159
13 TraesCS6B01G425400 chr3B 90.116 172 13 2 2057 2228 811170532 811170365 1.340000e-53 220
14 TraesCS6B01G425400 chrUn 91.447 152 8 2 2083 2234 23131396 23131542 1.350000e-48 204
15 TraesCS6B01G425400 chrUn 91.447 152 8 2 2083 2234 23342830 23342684 1.350000e-48 204
16 TraesCS6B01G425400 chrUn 91.447 152 8 2 2083 2234 431025752 431025898 1.350000e-48 204
17 TraesCS6B01G425400 chrUn 91.447 152 8 2 2083 2234 431099959 431099813 1.350000e-48 204
18 TraesCS6B01G425400 chrUn 90.728 151 10 1 2084 2234 23184415 23184561 6.290000e-47 198
19 TraesCS6B01G425400 chrUn 90.789 152 9 2 2083 2234 381251905 381251759 6.290000e-47 198
20 TraesCS6B01G425400 chr2D 91.429 140 12 0 2739 2878 194804480 194804341 2.930000e-45 193
21 TraesCS6B01G425400 chr2D 86.029 136 19 0 2739 2874 586389772 586389637 2.310000e-31 147
22 TraesCS6B01G425400 chr4B 87.324 142 17 1 2737 2878 588748077 588748217 8.250000e-36 161
23 TraesCS6B01G425400 chr3A 87.143 140 18 0 2739 2878 13450703 13450842 2.970000e-35 159
24 TraesCS6B01G425400 chr7B 84.564 149 23 0 2730 2878 489815063 489815211 6.420000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G425400 chr6B 694344930 694347807 2877 False 2307.0 4298 100.0000 1 2878 2 chr6B.!!$F1 2877
1 TraesCS6B01G425400 chr6D 456545906 456547824 1918 False 1214.5 2041 89.4655 552 2689 2 chr6D.!!$F1 2137
2 TraesCS6B01G425400 chr6A 603271456 603273380 1924 False 1166.0 1803 88.4500 557 2682 2 chr6A.!!$F1 2125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.029035 ACTATTGTACTCTCGGCGCG 59.971 55.0 0.0 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2131 0.033109 ATACTTTGCTTCTGGCCCCC 60.033 55.0 0.0 0.0 40.92 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.361135 TTGTGATTGAGCTTATGTGTGTG 57.639 39.130 0.00 0.00 0.00 3.82
23 24 3.752747 TGTGATTGAGCTTATGTGTGTGG 59.247 43.478 0.00 0.00 0.00 4.17
24 25 4.002982 GTGATTGAGCTTATGTGTGTGGA 58.997 43.478 0.00 0.00 0.00 4.02
25 26 4.637534 GTGATTGAGCTTATGTGTGTGGAT 59.362 41.667 0.00 0.00 0.00 3.41
26 27 5.124457 GTGATTGAGCTTATGTGTGTGGATT 59.876 40.000 0.00 0.00 0.00 3.01
27 28 6.316140 GTGATTGAGCTTATGTGTGTGGATTA 59.684 38.462 0.00 0.00 0.00 1.75
28 29 6.883756 TGATTGAGCTTATGTGTGTGGATTAA 59.116 34.615 0.00 0.00 0.00 1.40
29 30 7.557358 TGATTGAGCTTATGTGTGTGGATTAAT 59.443 33.333 0.00 0.00 0.00 1.40
30 31 8.978874 ATTGAGCTTATGTGTGTGGATTAATA 57.021 30.769 0.00 0.00 0.00 0.98
31 32 7.786178 TGAGCTTATGTGTGTGGATTAATAC 57.214 36.000 0.00 0.00 0.00 1.89
32 33 7.334858 TGAGCTTATGTGTGTGGATTAATACA 58.665 34.615 0.00 0.00 0.00 2.29
33 34 7.992608 TGAGCTTATGTGTGTGGATTAATACAT 59.007 33.333 3.06 4.25 33.74 2.29
34 35 8.158169 AGCTTATGTGTGTGGATTAATACATG 57.842 34.615 3.06 0.00 31.84 3.21
35 36 7.229306 AGCTTATGTGTGTGGATTAATACATGG 59.771 37.037 3.06 1.67 31.84 3.66
36 37 7.013274 GCTTATGTGTGTGGATTAATACATGGT 59.987 37.037 3.06 0.00 31.84 3.55
37 38 8.815565 TTATGTGTGTGGATTAATACATGGTT 57.184 30.769 3.06 0.00 31.84 3.67
38 39 7.716799 ATGTGTGTGGATTAATACATGGTTT 57.283 32.000 3.06 0.00 0.00 3.27
39 40 7.531857 TGTGTGTGGATTAATACATGGTTTT 57.468 32.000 3.06 0.00 0.00 2.43
40 41 8.637196 TGTGTGTGGATTAATACATGGTTTTA 57.363 30.769 3.06 0.00 0.00 1.52
41 42 9.078990 TGTGTGTGGATTAATACATGGTTTTAA 57.921 29.630 3.06 0.00 0.00 1.52
42 43 9.915629 GTGTGTGGATTAATACATGGTTTTAAA 57.084 29.630 3.06 0.00 0.00 1.52
46 47 9.093970 GTGGATTAATACATGGTTTTAAAAGGC 57.906 33.333 3.06 0.00 0.00 4.35
47 48 8.816894 TGGATTAATACATGGTTTTAAAAGGCA 58.183 29.630 0.00 0.00 0.00 4.75
48 49 9.830975 GGATTAATACATGGTTTTAAAAGGCAT 57.169 29.630 0.00 0.00 0.00 4.40
53 54 8.721019 ATACATGGTTTTAAAAGGCATGAATG 57.279 30.769 0.00 1.47 0.00 2.67
70 71 7.837202 CATGAATGCTTCAAATGGTGTATTT 57.163 32.000 3.27 0.00 43.95 1.40
81 82 6.538945 AAATGGTGTATTTGAATGGTACCC 57.461 37.500 10.07 0.00 37.59 3.69
82 83 4.659529 TGGTGTATTTGAATGGTACCCA 57.340 40.909 10.07 0.00 38.19 4.51
83 84 6.671779 AAATGGTGTATTTGAATGGTACCCAT 59.328 34.615 10.07 0.00 40.60 4.00
84 85 6.328782 TGGTGTATTTGAATGGTACCCATA 57.671 37.500 10.07 0.00 44.40 2.74
85 86 6.361433 TGGTGTATTTGAATGGTACCCATAG 58.639 40.000 10.07 0.00 44.40 2.23
86 87 6.158871 TGGTGTATTTGAATGGTACCCATAGA 59.841 38.462 10.07 0.00 44.40 1.98
87 88 7.057894 GGTGTATTTGAATGGTACCCATAGAA 58.942 38.462 10.07 0.00 44.40 2.10
88 89 7.724061 GGTGTATTTGAATGGTACCCATAGAAT 59.276 37.037 10.07 7.22 44.40 2.40
89 90 9.787435 GTGTATTTGAATGGTACCCATAGAATA 57.213 33.333 10.07 6.28 44.40 1.75
118 119 7.800300 AGGAACTTTAGAGGAACAACTAGAT 57.200 36.000 0.00 0.00 27.25 1.98
119 120 8.208575 AGGAACTTTAGAGGAACAACTAGATT 57.791 34.615 0.00 0.00 27.25 2.40
120 121 8.661345 AGGAACTTTAGAGGAACAACTAGATTT 58.339 33.333 0.00 0.00 27.25 2.17
121 122 8.722394 GGAACTTTAGAGGAACAACTAGATTTG 58.278 37.037 0.00 0.00 0.00 2.32
122 123 9.490379 GAACTTTAGAGGAACAACTAGATTTGA 57.510 33.333 0.00 0.00 0.00 2.69
123 124 9.847224 AACTTTAGAGGAACAACTAGATTTGAA 57.153 29.630 0.00 0.00 0.00 2.69
124 125 9.847224 ACTTTAGAGGAACAACTAGATTTGAAA 57.153 29.630 0.00 0.00 0.00 2.69
126 127 9.621629 TTTAGAGGAACAACTAGATTTGAAACA 57.378 29.630 0.00 0.00 0.00 2.83
127 128 7.736447 AGAGGAACAACTAGATTTGAAACAG 57.264 36.000 0.00 0.00 0.00 3.16
128 129 7.509546 AGAGGAACAACTAGATTTGAAACAGA 58.490 34.615 0.00 0.00 0.00 3.41
129 130 8.160106 AGAGGAACAACTAGATTTGAAACAGAT 58.840 33.333 0.00 0.00 0.00 2.90
130 131 9.436957 GAGGAACAACTAGATTTGAAACAGATA 57.563 33.333 0.00 0.00 0.00 1.98
131 132 9.442047 AGGAACAACTAGATTTGAAACAGATAG 57.558 33.333 0.00 0.00 0.00 2.08
132 133 9.436957 GGAACAACTAGATTTGAAACAGATAGA 57.563 33.333 0.00 0.00 0.00 1.98
134 135 8.485976 ACAACTAGATTTGAAACAGATAGAGC 57.514 34.615 0.00 0.00 0.00 4.09
135 136 8.097038 ACAACTAGATTTGAAACAGATAGAGCA 58.903 33.333 0.00 0.00 0.00 4.26
136 137 9.107177 CAACTAGATTTGAAACAGATAGAGCAT 57.893 33.333 0.00 0.00 0.00 3.79
141 142 9.624373 AGATTTGAAACAGATAGAGCATAATGT 57.376 29.630 0.00 0.00 0.00 2.71
144 145 9.890629 TTTGAAACAGATAGAGCATAATGTACT 57.109 29.630 0.00 0.00 0.00 2.73
156 157 8.508062 AGAGCATAATGTACTATTGTACTCTCG 58.492 37.037 16.61 5.09 46.70 4.04
157 158 7.594714 AGCATAATGTACTATTGTACTCTCGG 58.405 38.462 16.61 6.77 46.70 4.63
158 159 6.308282 GCATAATGTACTATTGTACTCTCGGC 59.692 42.308 16.61 11.60 46.70 5.54
159 160 3.957671 TGTACTATTGTACTCTCGGCG 57.042 47.619 16.61 0.00 46.70 6.46
160 161 2.032550 TGTACTATTGTACTCTCGGCGC 59.967 50.000 16.61 0.00 46.70 6.53
161 162 0.029035 ACTATTGTACTCTCGGCGCG 59.971 55.000 0.00 0.00 0.00 6.86
162 163 1.269444 CTATTGTACTCTCGGCGCGC 61.269 60.000 25.94 25.94 0.00 6.86
163 164 2.976881 TATTGTACTCTCGGCGCGCG 62.977 60.000 28.44 28.44 0.00 6.86
626 630 2.159085 CCTATGGTCCAAAGAGTCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
706 715 9.692325 ATAGAGACCTCTTGCTTAAAAATGAAT 57.308 29.630 4.73 0.00 40.93 2.57
719 739 9.219603 GCTTAAAAATGAATAAAAAGAAGGCCT 57.780 29.630 0.00 0.00 0.00 5.19
731 751 0.392595 GAAGGCCTAACCAAGTCGGG 60.393 60.000 5.16 0.00 43.14 5.14
768 788 0.393077 CGTGTCTCCTCCTTGTTGGT 59.607 55.000 0.00 0.00 37.07 3.67
843 863 6.098266 ACAAAGAAAGTGCAATAGTTTTCCCT 59.902 34.615 0.00 0.00 32.13 4.20
864 884 8.842358 TCCCTAAAAAGTGTTAGTAACATGAG 57.158 34.615 18.35 5.53 44.35 2.90
929 950 7.158021 TGAAAATGAAAATAAATCAAGCGGGT 58.842 30.769 0.00 0.00 0.00 5.28
953 974 0.748005 GCCACTGGTGTTGTGTGAGT 60.748 55.000 0.00 0.00 33.95 3.41
955 976 1.016627 CACTGGTGTTGTGTGAGTGG 58.983 55.000 0.00 0.00 33.95 4.00
966 987 0.976641 TGTGAGTGGGACATGTCTCC 59.023 55.000 22.96 21.51 44.52 3.71
967 988 1.270907 GTGAGTGGGACATGTCTCCT 58.729 55.000 22.96 18.22 44.52 3.69
968 989 1.205893 GTGAGTGGGACATGTCTCCTC 59.794 57.143 25.57 25.57 44.52 3.71
1034 1055 2.204136 ACCACATCCTCCCAGCCA 60.204 61.111 0.00 0.00 0.00 4.75
1143 1164 3.770040 CGATCCCCGCACACCTCA 61.770 66.667 0.00 0.00 0.00 3.86
1167 1188 1.530771 GACCATGGCCATCTCAGCT 59.469 57.895 17.61 0.00 0.00 4.24
1182 1203 3.151022 GCTACCTCCAGCCTCGCT 61.151 66.667 0.00 0.00 40.77 4.93
1281 1308 2.267324 GTGCTCCTCCTGCTGTCC 59.733 66.667 0.00 0.00 0.00 4.02
1681 1708 5.652891 TGTTTGGGTTTAGTGCTTACAGAAA 59.347 36.000 0.00 0.00 0.00 2.52
1690 1717 2.096218 GTGCTTACAGAAAGAACTGGCG 60.096 50.000 0.00 0.00 40.27 5.69
1692 1719 2.413453 GCTTACAGAAAGAACTGGCGAG 59.587 50.000 0.00 0.00 41.59 5.03
1716 1743 6.366877 AGCATTATTTGTTCATGACTTTGTGC 59.633 34.615 0.00 0.00 0.00 4.57
1861 1895 5.002464 AGCTTACATTGTTTCATGATGCC 57.998 39.130 0.00 0.00 0.00 4.40
1870 1904 4.406456 TGTTTCATGATGCCAAGTACCTT 58.594 39.130 0.00 0.00 0.00 3.50
1875 1909 3.410631 TGATGCCAAGTACCTTTTCGA 57.589 42.857 0.00 0.00 0.00 3.71
1888 1922 1.403679 CTTTTCGACAACTGCCCAACA 59.596 47.619 0.00 0.00 0.00 3.33
1913 1952 4.017683 AGAAATCCTCAAATCCAGCTCCTT 60.018 41.667 0.00 0.00 0.00 3.36
1921 1960 1.786937 ATCCAGCTCCTTGATCTCGT 58.213 50.000 0.00 0.00 0.00 4.18
1935 1974 0.535335 TCTCGTTTCCATCTTCCCGG 59.465 55.000 0.00 0.00 0.00 5.73
1941 1980 0.392461 TTCCATCTTCCCGGCGAAAG 60.392 55.000 9.30 12.10 0.00 2.62
1973 2012 1.813513 AGAACCATTCGGCAACAGAG 58.186 50.000 0.00 0.00 34.57 3.35
1985 2024 0.179936 CAACAGAGCTCCCAGATCCC 59.820 60.000 10.93 0.00 29.18 3.85
1994 2033 1.117749 TCCCAGATCCCTGATCGCTG 61.118 60.000 0.00 0.00 43.17 5.18
2003 2042 1.617018 CCTGATCGCTGGTCTTGGGA 61.617 60.000 0.00 0.00 0.00 4.37
2004 2043 0.250234 CTGATCGCTGGTCTTGGGAA 59.750 55.000 0.00 0.00 0.00 3.97
2013 2052 1.551019 GGTCTTGGGAAGGTAGCCGT 61.551 60.000 0.00 0.00 0.00 5.68
2020 2059 2.106166 TGGGAAGGTAGCCGTTTAACAA 59.894 45.455 0.00 0.00 0.00 2.83
2024 2063 4.319984 GGAAGGTAGCCGTTTAACAAGTTG 60.320 45.833 0.00 0.00 0.00 3.16
2047 2094 1.688735 CTCGATTCTGGCATGGTAGGA 59.311 52.381 0.00 0.00 0.00 2.94
2048 2095 2.103094 CTCGATTCTGGCATGGTAGGAA 59.897 50.000 0.00 0.00 0.00 3.36
2049 2096 2.103094 TCGATTCTGGCATGGTAGGAAG 59.897 50.000 0.00 0.00 0.00 3.46
2050 2097 2.808202 CGATTCTGGCATGGTAGGAAGG 60.808 54.545 0.00 0.00 0.00 3.46
2051 2098 1.965414 TTCTGGCATGGTAGGAAGGA 58.035 50.000 0.00 0.00 0.00 3.36
2052 2099 1.965414 TCTGGCATGGTAGGAAGGAA 58.035 50.000 0.00 0.00 0.00 3.36
2053 2100 2.274542 TCTGGCATGGTAGGAAGGAAA 58.725 47.619 0.00 0.00 0.00 3.13
2054 2101 2.239654 TCTGGCATGGTAGGAAGGAAAG 59.760 50.000 0.00 0.00 0.00 2.62
2055 2102 1.284785 TGGCATGGTAGGAAGGAAAGG 59.715 52.381 0.00 0.00 0.00 3.11
2056 2103 1.393603 GCATGGTAGGAAGGAAAGGC 58.606 55.000 0.00 0.00 0.00 4.35
2057 2104 1.340991 GCATGGTAGGAAGGAAAGGCA 60.341 52.381 0.00 0.00 0.00 4.75
2058 2105 2.648059 CATGGTAGGAAGGAAAGGCAG 58.352 52.381 0.00 0.00 0.00 4.85
2059 2106 1.742308 TGGTAGGAAGGAAAGGCAGT 58.258 50.000 0.00 0.00 0.00 4.40
2060 2107 1.351017 TGGTAGGAAGGAAAGGCAGTG 59.649 52.381 0.00 0.00 0.00 3.66
2061 2108 1.340114 GGTAGGAAGGAAAGGCAGTGG 60.340 57.143 0.00 0.00 0.00 4.00
2062 2109 0.328258 TAGGAAGGAAAGGCAGTGGC 59.672 55.000 9.02 9.02 40.13 5.01
2063 2110 1.228552 GGAAGGAAAGGCAGTGGCA 60.229 57.895 20.04 0.00 43.71 4.92
2064 2111 1.246737 GGAAGGAAAGGCAGTGGCAG 61.247 60.000 20.04 0.00 43.71 4.85
2065 2112 0.250901 GAAGGAAAGGCAGTGGCAGA 60.251 55.000 20.04 0.00 43.71 4.26
2066 2113 0.251077 AAGGAAAGGCAGTGGCAGAG 60.251 55.000 20.04 0.00 43.71 3.35
2067 2114 2.338785 GGAAAGGCAGTGGCAGAGC 61.339 63.158 20.04 4.97 43.71 4.09
2068 2115 1.303155 GAAAGGCAGTGGCAGAGCT 60.303 57.895 20.04 0.00 43.71 4.09
2069 2116 0.892814 GAAAGGCAGTGGCAGAGCTT 60.893 55.000 20.04 0.45 43.71 3.74
2070 2117 1.177256 AAAGGCAGTGGCAGAGCTTG 61.177 55.000 20.04 0.00 43.71 4.01
2071 2118 2.033141 GGCAGTGGCAGAGCTTGA 59.967 61.111 12.58 0.00 43.71 3.02
2072 2119 1.601759 GGCAGTGGCAGAGCTTGAA 60.602 57.895 12.58 0.00 43.71 2.69
2073 2120 0.964358 GGCAGTGGCAGAGCTTGAAT 60.964 55.000 12.58 0.00 43.71 2.57
2074 2121 0.170561 GCAGTGGCAGAGCTTGAATG 59.829 55.000 4.01 0.00 40.72 2.67
2075 2122 0.170561 CAGTGGCAGAGCTTGAATGC 59.829 55.000 0.00 5.81 39.25 3.56
2076 2123 0.251033 AGTGGCAGAGCTTGAATGCA 60.251 50.000 13.76 0.00 41.78 3.96
2077 2124 0.599558 GTGGCAGAGCTTGAATGCAA 59.400 50.000 13.76 2.67 41.78 4.08
2078 2125 1.203994 GTGGCAGAGCTTGAATGCAAT 59.796 47.619 13.76 0.00 41.78 3.56
2079 2126 1.203758 TGGCAGAGCTTGAATGCAATG 59.796 47.619 13.76 0.00 41.78 2.82
2080 2127 1.203994 GGCAGAGCTTGAATGCAATGT 59.796 47.619 13.76 0.00 41.78 2.71
2081 2128 2.527100 GCAGAGCTTGAATGCAATGTC 58.473 47.619 0.00 0.00 39.75 3.06
2082 2129 2.094906 GCAGAGCTTGAATGCAATGTCA 60.095 45.455 0.00 0.00 39.75 3.58
2083 2130 3.759418 CAGAGCTTGAATGCAATGTCAG 58.241 45.455 0.00 0.00 32.68 3.51
2084 2131 2.753452 AGAGCTTGAATGCAATGTCAGG 59.247 45.455 0.00 0.00 32.68 3.86
2085 2132 1.822990 AGCTTGAATGCAATGTCAGGG 59.177 47.619 0.00 0.00 32.68 4.45
2086 2133 1.134907 GCTTGAATGCAATGTCAGGGG 60.135 52.381 0.00 0.00 32.68 4.79
2087 2134 1.479323 CTTGAATGCAATGTCAGGGGG 59.521 52.381 0.00 0.00 32.68 5.40
2101 2148 2.118294 GGGGGCCAGAAGCAAAGT 59.882 61.111 4.39 0.00 46.50 2.66
2102 2149 1.382629 GGGGGCCAGAAGCAAAGTA 59.617 57.895 4.39 0.00 46.50 2.24
2103 2150 0.033109 GGGGGCCAGAAGCAAAGTAT 60.033 55.000 4.39 0.00 46.50 2.12
2104 2151 1.214424 GGGGGCCAGAAGCAAAGTATA 59.786 52.381 4.39 0.00 46.50 1.47
2105 2152 2.298610 GGGGCCAGAAGCAAAGTATAC 58.701 52.381 4.39 0.00 46.50 1.47
2106 2153 2.356741 GGGGCCAGAAGCAAAGTATACA 60.357 50.000 4.39 0.00 46.50 2.29
2107 2154 3.555966 GGGCCAGAAGCAAAGTATACAT 58.444 45.455 4.39 0.00 46.50 2.29
2108 2155 3.316308 GGGCCAGAAGCAAAGTATACATG 59.684 47.826 4.39 5.06 46.50 3.21
2109 2156 3.947834 GGCCAGAAGCAAAGTATACATGT 59.052 43.478 2.69 2.69 46.50 3.21
2110 2157 4.399303 GGCCAGAAGCAAAGTATACATGTT 59.601 41.667 2.30 0.00 46.50 2.71
2111 2158 5.588648 GGCCAGAAGCAAAGTATACATGTTA 59.411 40.000 2.30 0.00 46.50 2.41
2112 2159 6.094881 GGCCAGAAGCAAAGTATACATGTTAA 59.905 38.462 2.30 0.00 46.50 2.01
2113 2160 7.201821 GGCCAGAAGCAAAGTATACATGTTAAT 60.202 37.037 2.30 0.00 46.50 1.40
2114 2161 8.836413 GCCAGAAGCAAAGTATACATGTTAATA 58.164 33.333 2.30 0.00 42.97 0.98
2117 2164 9.561069 AGAAGCAAAGTATACATGTTAATAGGG 57.439 33.333 2.30 0.00 0.00 3.53
2118 2165 9.555727 GAAGCAAAGTATACATGTTAATAGGGA 57.444 33.333 2.30 0.00 0.00 4.20
2119 2166 8.904099 AGCAAAGTATACATGTTAATAGGGAC 57.096 34.615 2.30 0.00 0.00 4.46
2120 2167 8.714906 AGCAAAGTATACATGTTAATAGGGACT 58.285 33.333 2.30 0.00 46.37 3.85
2183 2230 3.230134 TCCTTCAGGAATTTGTGTTGGG 58.770 45.455 0.00 0.00 42.18 4.12
2184 2231 2.289010 CCTTCAGGAATTTGTGTTGGGC 60.289 50.000 0.00 0.00 37.39 5.36
2185 2232 2.380064 TCAGGAATTTGTGTTGGGCT 57.620 45.000 0.00 0.00 0.00 5.19
2186 2233 1.962807 TCAGGAATTTGTGTTGGGCTG 59.037 47.619 0.00 0.00 0.00 4.85
2187 2234 1.001181 CAGGAATTTGTGTTGGGCTGG 59.999 52.381 0.00 0.00 0.00 4.85
2188 2235 0.321346 GGAATTTGTGTTGGGCTGGG 59.679 55.000 0.00 0.00 0.00 4.45
2189 2236 0.321346 GAATTTGTGTTGGGCTGGGG 59.679 55.000 0.00 0.00 0.00 4.96
2190 2237 1.126948 AATTTGTGTTGGGCTGGGGG 61.127 55.000 0.00 0.00 0.00 5.40
2213 2260 3.174265 GGCATAGCCCCCTCAGCT 61.174 66.667 0.00 0.00 44.06 4.24
2214 2261 1.843376 GGCATAGCCCCCTCAGCTA 60.843 63.158 0.00 0.00 46.32 3.32
2219 2266 2.011122 TAGCCCCCTCAGCTATACAC 57.989 55.000 0.00 0.00 41.83 2.90
2220 2267 0.031111 AGCCCCCTCAGCTATACACA 60.031 55.000 0.00 0.00 39.29 3.72
2221 2268 1.059913 GCCCCCTCAGCTATACACAT 58.940 55.000 0.00 0.00 0.00 3.21
2222 2269 2.158158 AGCCCCCTCAGCTATACACATA 60.158 50.000 0.00 0.00 39.29 2.29
2223 2270 2.234908 GCCCCCTCAGCTATACACATAG 59.765 54.545 0.00 0.00 37.74 2.23
2224 2271 2.834549 CCCCCTCAGCTATACACATAGG 59.165 54.545 0.00 0.00 35.58 2.57
2225 2272 3.511477 CCCCTCAGCTATACACATAGGT 58.489 50.000 0.00 0.00 44.45 3.08
2226 2273 3.511934 CCCCTCAGCTATACACATAGGTC 59.488 52.174 0.00 0.00 42.29 3.85
2227 2274 3.511934 CCCTCAGCTATACACATAGGTCC 59.488 52.174 0.00 0.00 42.29 4.46
2228 2275 3.191581 CCTCAGCTATACACATAGGTCCG 59.808 52.174 0.00 0.00 42.29 4.79
2229 2276 2.557056 TCAGCTATACACATAGGTCCGC 59.443 50.000 0.00 0.00 42.29 5.54
2230 2277 1.893801 AGCTATACACATAGGTCCGCC 59.106 52.381 0.00 0.00 40.65 6.13
2231 2278 1.616865 GCTATACACATAGGTCCGCCA 59.383 52.381 0.00 0.00 35.58 5.69
2232 2279 2.233922 GCTATACACATAGGTCCGCCAT 59.766 50.000 0.00 0.00 35.58 4.40
2233 2280 3.306780 GCTATACACATAGGTCCGCCATT 60.307 47.826 0.00 0.00 35.58 3.16
2234 2281 4.081862 GCTATACACATAGGTCCGCCATTA 60.082 45.833 0.00 0.00 35.58 1.90
2274 2321 2.038164 GGTCTTTTCTTCCCTGGTACGT 59.962 50.000 0.00 0.00 0.00 3.57
2285 2332 5.018539 TCCCTGGTACGTATCATTTTCTG 57.981 43.478 9.38 0.00 0.00 3.02
2294 2341 5.227908 ACGTATCATTTTCTGTCACTTCGT 58.772 37.500 0.00 0.00 0.00 3.85
2300 2347 0.531974 TTCTGTCACTTCGTGGTGGC 60.532 55.000 7.84 7.84 41.61 5.01
2323 2370 5.960105 GCAGCTCTTCGTAAATAATGTGAAC 59.040 40.000 0.00 0.00 0.00 3.18
2324 2371 6.478588 CAGCTCTTCGTAAATAATGTGAACC 58.521 40.000 0.00 0.00 0.00 3.62
2328 2375 6.110707 TCTTCGTAAATAATGTGAACCCCTC 58.889 40.000 0.00 0.00 0.00 4.30
2338 2385 2.971330 TGTGAACCCCTCATTTTGCAAT 59.029 40.909 0.00 0.00 36.14 3.56
2341 2388 3.007831 TGAACCCCTCATTTTGCAATTCC 59.992 43.478 0.00 0.00 0.00 3.01
2343 2390 4.059773 ACCCCTCATTTTGCAATTCCTA 57.940 40.909 0.00 0.00 0.00 2.94
2345 2392 3.385755 CCCCTCATTTTGCAATTCCTAGG 59.614 47.826 0.82 0.82 0.00 3.02
2368 2415 0.449388 GCCAAAACATCAGCTCCTCG 59.551 55.000 0.00 0.00 0.00 4.63
2394 2441 2.629137 TGCACTACAACCCGTCTTAGAA 59.371 45.455 0.00 0.00 0.00 2.10
2398 2445 4.630069 CACTACAACCCGTCTTAGAATTGG 59.370 45.833 0.00 0.00 0.00 3.16
2420 2467 0.247736 AGCTAACTTCACGGAGCTGG 59.752 55.000 0.00 0.00 43.53 4.85
2422 2469 0.741221 CTAACTTCACGGAGCTGGCC 60.741 60.000 0.00 0.00 0.00 5.36
2423 2470 2.180159 TAACTTCACGGAGCTGGCCC 62.180 60.000 0.00 0.00 0.00 5.80
2457 2504 1.893137 TCGGCTGCTGACTTAGAGAAA 59.107 47.619 7.16 0.00 0.00 2.52
2458 2505 2.497675 TCGGCTGCTGACTTAGAGAAAT 59.502 45.455 7.16 0.00 0.00 2.17
2471 2518 1.065854 AGAGAAATCAGGAGTTGGGCG 60.066 52.381 0.00 0.00 0.00 6.13
2472 2519 0.693049 AGAAATCAGGAGTTGGGCGT 59.307 50.000 0.00 0.00 0.00 5.68
2476 2523 1.244019 ATCAGGAGTTGGGCGTTTGC 61.244 55.000 0.00 0.00 41.71 3.68
2563 2611 9.874205 ATAACAATTGTAATGGAAATGAACCAG 57.126 29.630 12.39 0.00 40.89 4.00
2594 2643 5.690464 TTTTTGGGGAAATGTGGGATATG 57.310 39.130 0.00 0.00 0.00 1.78
2682 2731 3.980775 CACCATCGTTCCAAAATGACAAC 59.019 43.478 0.00 0.00 33.31 3.32
2683 2732 3.634448 ACCATCGTTCCAAAATGACAACA 59.366 39.130 0.00 0.00 33.31 3.33
2684 2733 4.280677 ACCATCGTTCCAAAATGACAACAT 59.719 37.500 0.00 0.00 38.50 2.71
2689 2738 7.731882 TCGTTCCAAAATGACAACATACTAA 57.268 32.000 0.00 0.00 35.50 2.24
2690 2739 7.577979 TCGTTCCAAAATGACAACATACTAAC 58.422 34.615 0.00 0.00 35.50 2.34
2691 2740 7.442969 TCGTTCCAAAATGACAACATACTAACT 59.557 33.333 0.00 0.00 35.50 2.24
2692 2741 8.073768 CGTTCCAAAATGACAACATACTAACTT 58.926 33.333 0.00 0.00 35.50 2.66
2693 2742 9.180678 GTTCCAAAATGACAACATACTAACTTG 57.819 33.333 0.00 0.00 35.50 3.16
2694 2743 7.367285 TCCAAAATGACAACATACTAACTTGC 58.633 34.615 0.00 0.00 35.50 4.01
2695 2744 6.586082 CCAAAATGACAACATACTAACTTGCC 59.414 38.462 0.00 0.00 35.50 4.52
2696 2745 6.892658 AAATGACAACATACTAACTTGCCA 57.107 33.333 0.00 0.00 35.50 4.92
2697 2746 7.466746 AAATGACAACATACTAACTTGCCAT 57.533 32.000 0.00 0.00 35.50 4.40
2698 2747 5.878332 TGACAACATACTAACTTGCCATG 57.122 39.130 0.00 0.00 0.00 3.66
2699 2748 5.555966 TGACAACATACTAACTTGCCATGA 58.444 37.500 0.00 0.00 0.00 3.07
2700 2749 6.179756 TGACAACATACTAACTTGCCATGAT 58.820 36.000 0.00 0.00 0.00 2.45
2701 2750 6.658816 TGACAACATACTAACTTGCCATGATT 59.341 34.615 0.00 0.00 0.00 2.57
2702 2751 7.176515 TGACAACATACTAACTTGCCATGATTT 59.823 33.333 0.00 0.00 0.00 2.17
2703 2752 7.895759 ACAACATACTAACTTGCCATGATTTT 58.104 30.769 0.00 0.00 0.00 1.82
2704 2753 7.814107 ACAACATACTAACTTGCCATGATTTTG 59.186 33.333 0.00 0.00 0.00 2.44
2705 2754 7.466746 ACATACTAACTTGCCATGATTTTGT 57.533 32.000 0.00 0.00 0.00 2.83
2706 2755 8.574251 ACATACTAACTTGCCATGATTTTGTA 57.426 30.769 0.00 0.00 0.00 2.41
2707 2756 8.458843 ACATACTAACTTGCCATGATTTTGTAC 58.541 33.333 0.00 0.00 0.00 2.90
2708 2757 6.267496 ACTAACTTGCCATGATTTTGTACC 57.733 37.500 0.00 0.00 0.00 3.34
2709 2758 4.535526 AACTTGCCATGATTTTGTACCC 57.464 40.909 0.00 0.00 0.00 3.69
2710 2759 2.831526 ACTTGCCATGATTTTGTACCCC 59.168 45.455 0.00 0.00 0.00 4.95
2711 2760 1.859302 TGCCATGATTTTGTACCCCC 58.141 50.000 0.00 0.00 0.00 5.40
2712 2761 1.077828 TGCCATGATTTTGTACCCCCA 59.922 47.619 0.00 0.00 0.00 4.96
2713 2762 1.480545 GCCATGATTTTGTACCCCCAC 59.519 52.381 0.00 0.00 0.00 4.61
2714 2763 2.107366 CCATGATTTTGTACCCCCACC 58.893 52.381 0.00 0.00 0.00 4.61
2715 2764 2.558575 CCATGATTTTGTACCCCCACCA 60.559 50.000 0.00 0.00 0.00 4.17
2716 2765 3.373830 CATGATTTTGTACCCCCACCAT 58.626 45.455 0.00 0.00 0.00 3.55
2717 2766 2.813907 TGATTTTGTACCCCCACCATG 58.186 47.619 0.00 0.00 0.00 3.66
2718 2767 2.110899 TGATTTTGTACCCCCACCATGT 59.889 45.455 0.00 0.00 0.00 3.21
2719 2768 2.002505 TTTTGTACCCCCACCATGTG 57.997 50.000 0.00 0.00 0.00 3.21
2720 2769 0.854218 TTTGTACCCCCACCATGTGT 59.146 50.000 0.00 0.00 0.00 3.72
2721 2770 0.111446 TTGTACCCCCACCATGTGTG 59.889 55.000 7.20 7.20 45.01 3.82
2722 2771 1.063070 TGTACCCCCACCATGTGTGT 61.063 55.000 11.73 0.00 43.85 3.72
2723 2772 0.111639 GTACCCCCACCATGTGTGTT 59.888 55.000 11.73 0.00 43.85 3.32
2724 2773 1.351683 GTACCCCCACCATGTGTGTTA 59.648 52.381 11.73 0.00 43.85 2.41
2725 2774 0.111639 ACCCCCACCATGTGTGTTAC 59.888 55.000 11.73 0.00 43.85 2.50
2726 2775 0.111446 CCCCCACCATGTGTGTTACA 59.889 55.000 11.73 0.00 43.85 2.41
2727 2776 1.479573 CCCCCACCATGTGTGTTACAA 60.480 52.381 11.73 0.00 43.77 2.41
2728 2777 1.885887 CCCCACCATGTGTGTTACAAG 59.114 52.381 11.73 0.00 43.77 3.16
2729 2778 2.488167 CCCCACCATGTGTGTTACAAGA 60.488 50.000 11.73 0.00 43.77 3.02
2730 2779 3.420893 CCCACCATGTGTGTTACAAGAT 58.579 45.455 11.73 0.00 43.77 2.40
2731 2780 3.826157 CCCACCATGTGTGTTACAAGATT 59.174 43.478 11.73 0.00 43.77 2.40
2732 2781 4.082787 CCCACCATGTGTGTTACAAGATTC 60.083 45.833 11.73 0.00 43.77 2.52
2733 2782 4.518590 CCACCATGTGTGTTACAAGATTCA 59.481 41.667 11.73 0.00 43.77 2.57
2734 2783 5.451908 CACCATGTGTGTTACAAGATTCAC 58.548 41.667 6.25 0.00 43.77 3.18
2735 2784 5.008514 CACCATGTGTGTTACAAGATTCACA 59.991 40.000 7.91 7.91 43.77 3.58
2736 2785 5.592282 ACCATGTGTGTTACAAGATTCACAA 59.408 36.000 9.22 0.00 43.77 3.33
2737 2786 6.144854 CCATGTGTGTTACAAGATTCACAAG 58.855 40.000 9.22 5.79 43.77 3.16
2738 2787 5.749596 TGTGTGTTACAAGATTCACAAGG 57.250 39.130 3.74 0.00 41.39 3.61
2739 2788 4.578516 TGTGTGTTACAAGATTCACAAGGG 59.421 41.667 3.74 0.00 41.39 3.95
2740 2789 4.819630 GTGTGTTACAAGATTCACAAGGGA 59.180 41.667 0.00 0.00 41.39 4.20
2741 2790 4.819630 TGTGTTACAAGATTCACAAGGGAC 59.180 41.667 0.00 0.00 37.77 4.46
2742 2791 4.062293 TGTTACAAGATTCACAAGGGACG 58.938 43.478 0.00 0.00 0.00 4.79
2743 2792 2.930826 ACAAGATTCACAAGGGACGT 57.069 45.000 0.00 0.00 0.00 4.34
2744 2793 2.494059 ACAAGATTCACAAGGGACGTG 58.506 47.619 0.00 0.00 45.09 4.49
2752 2801 3.936585 CAAGGGACGTGTTTGGTTG 57.063 52.632 0.00 0.00 31.96 3.77
2753 2802 0.248866 CAAGGGACGTGTTTGGTTGC 60.249 55.000 0.00 0.00 31.96 4.17
2754 2803 1.388837 AAGGGACGTGTTTGGTTGCC 61.389 55.000 0.00 0.00 0.00 4.52
2755 2804 1.826487 GGGACGTGTTTGGTTGCCT 60.826 57.895 0.00 0.00 0.00 4.75
2756 2805 1.358759 GGACGTGTTTGGTTGCCTG 59.641 57.895 0.00 0.00 0.00 4.85
2757 2806 1.299089 GACGTGTTTGGTTGCCTGC 60.299 57.895 0.00 0.00 0.00 4.85
2758 2807 1.999071 GACGTGTTTGGTTGCCTGCA 61.999 55.000 0.00 0.00 0.00 4.41
2759 2808 1.363443 CGTGTTTGGTTGCCTGCAT 59.637 52.632 0.00 0.00 0.00 3.96
2760 2809 0.595588 CGTGTTTGGTTGCCTGCATA 59.404 50.000 0.00 0.00 0.00 3.14
2761 2810 1.665735 CGTGTTTGGTTGCCTGCATAC 60.666 52.381 0.00 0.00 0.00 2.39
2762 2811 1.339610 GTGTTTGGTTGCCTGCATACA 59.660 47.619 0.00 0.00 0.00 2.29
2763 2812 1.339610 TGTTTGGTTGCCTGCATACAC 59.660 47.619 0.00 0.00 0.00 2.90
2764 2813 0.965439 TTTGGTTGCCTGCATACACC 59.035 50.000 4.82 4.82 0.00 4.16
2765 2814 0.112218 TTGGTTGCCTGCATACACCT 59.888 50.000 11.57 0.00 0.00 4.00
2766 2815 0.322456 TGGTTGCCTGCATACACCTC 60.322 55.000 11.57 0.00 0.00 3.85
2767 2816 1.369091 GGTTGCCTGCATACACCTCG 61.369 60.000 4.58 0.00 0.00 4.63
2768 2817 0.391130 GTTGCCTGCATACACCTCGA 60.391 55.000 0.00 0.00 0.00 4.04
2769 2818 0.391130 TTGCCTGCATACACCTCGAC 60.391 55.000 0.00 0.00 0.00 4.20
2770 2819 1.521681 GCCTGCATACACCTCGACC 60.522 63.158 0.00 0.00 0.00 4.79
2771 2820 1.897423 CCTGCATACACCTCGACCA 59.103 57.895 0.00 0.00 0.00 4.02
2772 2821 0.179100 CCTGCATACACCTCGACCAG 60.179 60.000 0.00 0.00 0.00 4.00
2806 2855 5.391312 AAGGATTCAACATGTTTGGTAGC 57.609 39.130 8.77 0.00 0.00 3.58
2807 2856 3.763897 AGGATTCAACATGTTTGGTAGCC 59.236 43.478 8.77 5.09 0.00 3.93
2808 2857 3.119137 GGATTCAACATGTTTGGTAGCCC 60.119 47.826 8.77 0.72 0.00 5.19
2809 2858 1.529226 TCAACATGTTTGGTAGCCCG 58.471 50.000 8.77 0.00 0.00 6.13
2810 2859 0.109319 CAACATGTTTGGTAGCCCGC 60.109 55.000 8.77 0.00 0.00 6.13
2811 2860 0.538516 AACATGTTTGGTAGCCCGCA 60.539 50.000 4.92 0.00 0.00 5.69
2812 2861 0.323360 ACATGTTTGGTAGCCCGCAT 60.323 50.000 0.00 0.00 0.00 4.73
2813 2862 1.065053 ACATGTTTGGTAGCCCGCATA 60.065 47.619 0.00 0.00 0.00 3.14
2814 2863 2.229792 CATGTTTGGTAGCCCGCATAT 58.770 47.619 0.00 0.00 0.00 1.78
2815 2864 3.181449 ACATGTTTGGTAGCCCGCATATA 60.181 43.478 0.00 0.00 0.00 0.86
2816 2865 3.780804 TGTTTGGTAGCCCGCATATAT 57.219 42.857 0.00 0.00 0.00 0.86
2817 2866 4.093472 TGTTTGGTAGCCCGCATATATT 57.907 40.909 0.00 0.00 0.00 1.28
2818 2867 3.818210 TGTTTGGTAGCCCGCATATATTG 59.182 43.478 0.00 0.00 0.00 1.90
2819 2868 3.780804 TTGGTAGCCCGCATATATTGT 57.219 42.857 0.00 0.00 0.00 2.71
2820 2869 3.780804 TGGTAGCCCGCATATATTGTT 57.219 42.857 0.00 0.00 0.00 2.83
2821 2870 3.407698 TGGTAGCCCGCATATATTGTTG 58.592 45.455 0.00 0.00 0.00 3.33
2822 2871 2.747446 GGTAGCCCGCATATATTGTTGG 59.253 50.000 0.00 0.00 0.00 3.77
2823 2872 1.909700 AGCCCGCATATATTGTTGGG 58.090 50.000 4.62 4.62 42.72 4.12
2825 2874 0.887933 CCCGCATATATTGTTGGGCC 59.112 55.000 0.00 0.00 36.67 5.80
2826 2875 1.547675 CCCGCATATATTGTTGGGCCT 60.548 52.381 4.53 0.00 36.67 5.19
2827 2876 1.541147 CCGCATATATTGTTGGGCCTG 59.459 52.381 4.53 0.00 0.00 4.85
2828 2877 1.068333 CGCATATATTGTTGGGCCTGC 60.068 52.381 4.53 1.26 0.00 4.85
2829 2878 1.962807 GCATATATTGTTGGGCCTGCA 59.037 47.619 4.53 0.00 0.00 4.41
2830 2879 2.564062 GCATATATTGTTGGGCCTGCAT 59.436 45.455 4.53 0.00 0.00 3.96
2831 2880 3.763360 GCATATATTGTTGGGCCTGCATA 59.237 43.478 4.53 0.00 0.00 3.14
2832 2881 4.142315 GCATATATTGTTGGGCCTGCATAG 60.142 45.833 4.53 0.00 0.00 2.23
2833 2882 1.691196 TATTGTTGGGCCTGCATAGC 58.309 50.000 4.53 0.27 0.00 2.97
2834 2883 0.324552 ATTGTTGGGCCTGCATAGCA 60.325 50.000 4.53 0.00 36.92 3.49
2835 2884 1.250154 TTGTTGGGCCTGCATAGCAC 61.250 55.000 4.53 7.61 33.79 4.40
2836 2885 2.438254 TTGGGCCTGCATAGCACG 60.438 61.111 4.53 0.00 36.00 5.34
2837 2886 2.965520 TTGGGCCTGCATAGCACGA 61.966 57.895 4.53 4.22 36.00 4.35
2838 2887 2.124736 GGGCCTGCATAGCACGAA 60.125 61.111 0.84 0.00 33.79 3.85
2839 2888 1.748879 GGGCCTGCATAGCACGAAA 60.749 57.895 0.84 0.00 33.79 3.46
2840 2889 1.429423 GGCCTGCATAGCACGAAAC 59.571 57.895 10.66 0.00 33.79 2.78
2841 2890 1.026718 GGCCTGCATAGCACGAAACT 61.027 55.000 10.66 0.00 33.79 2.66
2842 2891 0.804989 GCCTGCATAGCACGAAACTT 59.195 50.000 4.09 0.00 33.79 2.66
2843 2892 2.006888 GCCTGCATAGCACGAAACTTA 58.993 47.619 4.09 0.00 33.79 2.24
2844 2893 2.418628 GCCTGCATAGCACGAAACTTAA 59.581 45.455 4.09 0.00 33.79 1.85
2845 2894 3.119990 GCCTGCATAGCACGAAACTTAAA 60.120 43.478 4.09 0.00 33.79 1.52
2846 2895 4.651994 CCTGCATAGCACGAAACTTAAAG 58.348 43.478 0.00 0.00 33.79 1.85
2847 2896 4.078363 TGCATAGCACGAAACTTAAAGC 57.922 40.909 0.00 0.00 31.71 3.51
2848 2897 3.500299 TGCATAGCACGAAACTTAAAGCA 59.500 39.130 0.00 0.00 31.71 3.91
2849 2898 3.846335 GCATAGCACGAAACTTAAAGCAC 59.154 43.478 0.00 0.00 0.00 4.40
2850 2899 4.403453 CATAGCACGAAACTTAAAGCACC 58.597 43.478 0.00 0.00 0.00 5.01
2851 2900 2.572290 AGCACGAAACTTAAAGCACCT 58.428 42.857 0.00 0.00 0.00 4.00
2852 2901 2.548480 AGCACGAAACTTAAAGCACCTC 59.452 45.455 0.00 0.00 0.00 3.85
2853 2902 2.548480 GCACGAAACTTAAAGCACCTCT 59.452 45.455 0.00 0.00 0.00 3.69
2854 2903 3.744426 GCACGAAACTTAAAGCACCTCTA 59.256 43.478 0.00 0.00 0.00 2.43
2855 2904 4.143094 GCACGAAACTTAAAGCACCTCTAG 60.143 45.833 0.00 0.00 0.00 2.43
2856 2905 4.389077 CACGAAACTTAAAGCACCTCTAGG 59.611 45.833 0.00 0.00 42.17 3.02
2867 2916 2.601664 CCTCTAGGTCTGGCTTGCT 58.398 57.895 0.00 0.00 0.00 3.91
2868 2917 0.177604 CCTCTAGGTCTGGCTTGCTG 59.822 60.000 0.00 0.00 0.00 4.41
2869 2918 0.177604 CTCTAGGTCTGGCTTGCTGG 59.822 60.000 0.00 0.00 0.00 4.85
2870 2919 0.252239 TCTAGGTCTGGCTTGCTGGA 60.252 55.000 0.00 0.00 0.00 3.86
2871 2920 0.615331 CTAGGTCTGGCTTGCTGGAA 59.385 55.000 0.00 0.00 0.00 3.53
2872 2921 1.003580 CTAGGTCTGGCTTGCTGGAAA 59.996 52.381 0.00 0.00 0.00 3.13
2873 2922 0.538287 AGGTCTGGCTTGCTGGAAAC 60.538 55.000 0.00 0.00 0.00 2.78
2874 2923 0.823356 GGTCTGGCTTGCTGGAAACA 60.823 55.000 0.00 0.00 39.59 2.83
2875 2924 0.312102 GTCTGGCTTGCTGGAAACAC 59.688 55.000 0.00 0.00 35.60 3.32
2876 2925 0.183492 TCTGGCTTGCTGGAAACACT 59.817 50.000 0.00 0.00 35.60 3.55
2877 2926 0.595095 CTGGCTTGCTGGAAACACTC 59.405 55.000 0.00 0.00 35.60 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.216042 CCACACACATAAGCTCAATCACAA 59.784 41.667 0.00 0.00 0.00 3.33
1 2 3.752747 CCACACACATAAGCTCAATCACA 59.247 43.478 0.00 0.00 0.00 3.58
2 3 4.002982 TCCACACACATAAGCTCAATCAC 58.997 43.478 0.00 0.00 0.00 3.06
3 4 4.284829 TCCACACACATAAGCTCAATCA 57.715 40.909 0.00 0.00 0.00 2.57
4 5 5.824904 AATCCACACACATAAGCTCAATC 57.175 39.130 0.00 0.00 0.00 2.67
5 6 7.886629 ATTAATCCACACACATAAGCTCAAT 57.113 32.000 0.00 0.00 0.00 2.57
6 7 7.826744 TGTATTAATCCACACACATAAGCTCAA 59.173 33.333 0.00 0.00 0.00 3.02
7 8 7.334858 TGTATTAATCCACACACATAAGCTCA 58.665 34.615 0.00 0.00 0.00 4.26
8 9 7.786178 TGTATTAATCCACACACATAAGCTC 57.214 36.000 0.00 0.00 0.00 4.09
9 10 7.229306 CCATGTATTAATCCACACACATAAGCT 59.771 37.037 0.00 0.00 0.00 3.74
10 11 7.013274 ACCATGTATTAATCCACACACATAAGC 59.987 37.037 0.00 0.00 0.00 3.09
11 12 8.450578 ACCATGTATTAATCCACACACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
12 13 8.815565 AACCATGTATTAATCCACACACATAA 57.184 30.769 0.00 0.00 0.00 1.90
13 14 8.815565 AAACCATGTATTAATCCACACACATA 57.184 30.769 0.00 0.00 0.00 2.29
14 15 7.716799 AAACCATGTATTAATCCACACACAT 57.283 32.000 0.00 0.00 0.00 3.21
15 16 7.531857 AAAACCATGTATTAATCCACACACA 57.468 32.000 0.00 0.00 0.00 3.72
16 17 9.915629 TTTAAAACCATGTATTAATCCACACAC 57.084 29.630 0.00 0.00 0.00 3.82
20 21 9.093970 GCCTTTTAAAACCATGTATTAATCCAC 57.906 33.333 0.00 0.00 0.00 4.02
21 22 8.816894 TGCCTTTTAAAACCATGTATTAATCCA 58.183 29.630 0.00 0.00 0.00 3.41
22 23 9.830975 ATGCCTTTTAAAACCATGTATTAATCC 57.169 29.630 0.00 0.00 0.00 3.01
27 28 9.165035 CATTCATGCCTTTTAAAACCATGTATT 57.835 29.630 23.11 13.71 35.85 1.89
28 29 8.721019 CATTCATGCCTTTTAAAACCATGTAT 57.279 30.769 23.11 19.36 35.85 2.29
90 91 9.945904 CTAGTTGTTCCTCTAAAGTTCCTTATT 57.054 33.333 0.00 0.00 0.00 1.40
91 92 9.322769 TCTAGTTGTTCCTCTAAAGTTCCTTAT 57.677 33.333 0.00 0.00 0.00 1.73
92 93 8.716674 TCTAGTTGTTCCTCTAAAGTTCCTTA 57.283 34.615 0.00 0.00 0.00 2.69
93 94 7.613551 TCTAGTTGTTCCTCTAAAGTTCCTT 57.386 36.000 0.00 0.00 0.00 3.36
94 95 7.800300 ATCTAGTTGTTCCTCTAAAGTTCCT 57.200 36.000 0.00 0.00 0.00 3.36
95 96 8.722394 CAAATCTAGTTGTTCCTCTAAAGTTCC 58.278 37.037 0.00 0.00 0.00 3.62
96 97 9.490379 TCAAATCTAGTTGTTCCTCTAAAGTTC 57.510 33.333 0.00 0.00 0.00 3.01
97 98 9.847224 TTCAAATCTAGTTGTTCCTCTAAAGTT 57.153 29.630 0.00 0.00 0.00 2.66
98 99 9.847224 TTTCAAATCTAGTTGTTCCTCTAAAGT 57.153 29.630 0.00 0.00 0.00 2.66
100 101 9.621629 TGTTTCAAATCTAGTTGTTCCTCTAAA 57.378 29.630 0.00 0.00 0.00 1.85
101 102 9.273016 CTGTTTCAAATCTAGTTGTTCCTCTAA 57.727 33.333 0.00 0.00 0.00 2.10
102 103 8.647796 TCTGTTTCAAATCTAGTTGTTCCTCTA 58.352 33.333 0.00 0.00 0.00 2.43
103 104 7.509546 TCTGTTTCAAATCTAGTTGTTCCTCT 58.490 34.615 0.00 0.00 0.00 3.69
104 105 7.730364 TCTGTTTCAAATCTAGTTGTTCCTC 57.270 36.000 0.00 0.00 0.00 3.71
105 106 9.442047 CTATCTGTTTCAAATCTAGTTGTTCCT 57.558 33.333 0.00 0.00 0.00 3.36
106 107 9.436957 TCTATCTGTTTCAAATCTAGTTGTTCC 57.563 33.333 0.00 0.00 0.00 3.62
108 109 8.940952 GCTCTATCTGTTTCAAATCTAGTTGTT 58.059 33.333 0.00 0.00 0.00 2.83
109 110 8.097038 TGCTCTATCTGTTTCAAATCTAGTTGT 58.903 33.333 0.00 0.00 0.00 3.32
110 111 8.484641 TGCTCTATCTGTTTCAAATCTAGTTG 57.515 34.615 0.00 0.00 0.00 3.16
115 116 9.624373 ACATTATGCTCTATCTGTTTCAAATCT 57.376 29.630 0.00 0.00 0.00 2.40
118 119 9.890629 AGTACATTATGCTCTATCTGTTTCAAA 57.109 29.630 0.00 0.00 0.00 2.69
141 142 1.262417 CGCGCCGAGAGTACAATAGTA 59.738 52.381 0.00 0.00 0.00 1.82
142 143 0.029035 CGCGCCGAGAGTACAATAGT 59.971 55.000 0.00 0.00 0.00 2.12
143 144 1.269444 GCGCGCCGAGAGTACAATAG 61.269 60.000 23.24 0.00 0.00 1.73
144 145 1.298863 GCGCGCCGAGAGTACAATA 60.299 57.895 23.24 0.00 0.00 1.90
145 146 2.582498 GCGCGCCGAGAGTACAAT 60.582 61.111 23.24 0.00 0.00 2.71
602 604 4.543689 ACGACTCTTTGGACCATAGGATA 58.456 43.478 11.53 0.00 0.00 2.59
605 607 2.159085 GGACGACTCTTTGGACCATAGG 60.159 54.545 11.53 5.70 0.00 2.57
609 611 0.679505 CTGGACGACTCTTTGGACCA 59.320 55.000 0.00 0.00 0.00 4.02
626 630 9.760077 TTTACCAGAAAACTTTAGTAGTCTCTG 57.240 33.333 0.00 0.00 35.54 3.35
702 711 6.780522 ACTTGGTTAGGCCTTCTTTTTATTCA 59.219 34.615 12.58 0.00 38.35 2.57
703 712 7.228314 ACTTGGTTAGGCCTTCTTTTTATTC 57.772 36.000 12.58 0.00 38.35 1.75
706 715 4.758165 CGACTTGGTTAGGCCTTCTTTTTA 59.242 41.667 12.58 0.00 38.35 1.52
712 732 0.392595 CCCGACTTGGTTAGGCCTTC 60.393 60.000 12.58 4.58 38.35 3.46
715 735 2.271173 CCCCGACTTGGTTAGGCC 59.729 66.667 0.00 0.00 35.15 5.19
719 739 1.844289 AGTGGCCCCGACTTGGTTA 60.844 57.895 0.00 0.00 35.15 2.85
722 742 4.722700 CCAGTGGCCCCGACTTGG 62.723 72.222 0.00 0.00 37.55 3.61
731 751 1.598130 GTCACTCACACCAGTGGCC 60.598 63.158 9.78 0.00 42.29 5.36
768 788 2.616797 TTTGGTTGCTCCTCGTGGCA 62.617 55.000 0.00 0.00 37.07 4.92
843 863 7.949903 TCGCTCATGTTACTAACACTTTTTA 57.050 32.000 3.67 0.00 45.50 1.52
929 950 2.382770 ACAACACCAGTGGCTCCCA 61.383 57.895 9.78 0.00 34.19 4.37
945 966 1.344438 GAGACATGTCCCACTCACACA 59.656 52.381 22.21 0.00 0.00 3.72
953 974 0.684479 CGAGGAGGAGACATGTCCCA 60.684 60.000 25.83 0.00 37.31 4.37
955 976 1.134965 CAACGAGGAGGAGACATGTCC 60.135 57.143 22.21 13.24 36.79 4.02
1034 1055 1.227946 GCCCCTCCTCTCGTAGTCT 59.772 63.158 0.00 0.00 0.00 3.24
1150 1171 0.471617 GTAGCTGAGATGGCCATGGT 59.528 55.000 26.56 16.74 0.00 3.55
1167 1188 1.454111 GAGAGCGAGGCTGGAGGTA 60.454 63.158 0.00 0.00 39.88 3.08
1638 1665 2.059786 CCGGATGGGCCAGCAAAAT 61.060 57.895 25.00 0.00 35.94 1.82
1681 1708 3.347216 ACAAATAATGCTCGCCAGTTCT 58.653 40.909 0.00 0.00 0.00 3.01
1690 1717 7.411157 GCACAAAGTCATGAACAAATAATGCTC 60.411 37.037 0.00 0.00 0.00 4.26
1692 1719 6.366877 AGCACAAAGTCATGAACAAATAATGC 59.633 34.615 0.00 0.74 0.00 3.56
1840 1874 4.746729 TGGCATCATGAAACAATGTAAGC 58.253 39.130 0.00 0.00 0.00 3.09
1870 1904 0.736053 GTGTTGGGCAGTTGTCGAAA 59.264 50.000 0.00 0.00 0.00 3.46
1875 1909 1.846007 TTTCTGTGTTGGGCAGTTGT 58.154 45.000 0.00 0.00 35.60 3.32
1888 1922 4.268359 GAGCTGGATTTGAGGATTTCTGT 58.732 43.478 0.00 0.00 0.00 3.41
1913 1952 2.159099 CGGGAAGATGGAAACGAGATCA 60.159 50.000 0.00 0.00 0.00 2.92
1921 1960 0.037017 TTTCGCCGGGAAGATGGAAA 59.963 50.000 2.18 0.00 35.70 3.13
1935 1974 2.031191 TCTTTTGAACCACGACTTTCGC 59.969 45.455 0.00 0.00 45.12 4.70
1973 2012 1.670590 CGATCAGGGATCTGGGAGC 59.329 63.158 4.86 0.00 41.23 4.70
1985 2024 0.250234 TTCCCAAGACCAGCGATCAG 59.750 55.000 0.00 0.00 0.00 2.90
1994 2033 1.221021 CGGCTACCTTCCCAAGACC 59.779 63.158 0.00 0.00 0.00 3.85
2003 2042 4.453751 TCAACTTGTTAAACGGCTACCTT 58.546 39.130 0.00 0.00 0.00 3.50
2004 2043 4.062991 CTCAACTTGTTAAACGGCTACCT 58.937 43.478 0.00 0.00 0.00 3.08
2013 2052 5.179368 CCAGAATCGAGCTCAACTTGTTAAA 59.821 40.000 15.40 0.00 0.00 1.52
2020 2059 0.610174 TGCCAGAATCGAGCTCAACT 59.390 50.000 15.40 3.93 0.00 3.16
2024 2063 0.179062 ACCATGCCAGAATCGAGCTC 60.179 55.000 2.73 2.73 0.00 4.09
2047 2094 0.251077 CTCTGCCACTGCCTTTCCTT 60.251 55.000 0.00 0.00 36.33 3.36
2048 2095 1.377994 CTCTGCCACTGCCTTTCCT 59.622 57.895 0.00 0.00 36.33 3.36
2049 2096 2.338785 GCTCTGCCACTGCCTTTCC 61.339 63.158 0.00 0.00 36.33 3.13
2050 2097 0.892814 AAGCTCTGCCACTGCCTTTC 60.893 55.000 0.00 0.00 36.33 2.62
2051 2098 1.152368 AAGCTCTGCCACTGCCTTT 59.848 52.632 0.00 0.00 36.33 3.11
2052 2099 1.602888 CAAGCTCTGCCACTGCCTT 60.603 57.895 0.00 0.00 36.33 4.35
2053 2100 2.033757 CAAGCTCTGCCACTGCCT 59.966 61.111 0.00 0.00 36.33 4.75
2054 2101 0.964358 ATTCAAGCTCTGCCACTGCC 60.964 55.000 0.00 0.00 36.33 4.85
2055 2102 0.170561 CATTCAAGCTCTGCCACTGC 59.829 55.000 0.00 0.00 38.26 4.40
2056 2103 0.170561 GCATTCAAGCTCTGCCACTG 59.829 55.000 0.00 0.00 0.00 3.66
2057 2104 0.251033 TGCATTCAAGCTCTGCCACT 60.251 50.000 7.72 0.00 35.02 4.00
2058 2105 0.599558 TTGCATTCAAGCTCTGCCAC 59.400 50.000 7.72 0.00 35.02 5.01
2059 2106 1.203758 CATTGCATTCAAGCTCTGCCA 59.796 47.619 7.72 0.00 35.37 4.92
2060 2107 1.203994 ACATTGCATTCAAGCTCTGCC 59.796 47.619 7.72 0.00 35.37 4.85
2061 2108 2.094906 TGACATTGCATTCAAGCTCTGC 60.095 45.455 0.00 0.00 35.37 4.26
2062 2109 3.427638 CCTGACATTGCATTCAAGCTCTG 60.428 47.826 0.00 0.00 35.37 3.35
2063 2110 2.753452 CCTGACATTGCATTCAAGCTCT 59.247 45.455 0.00 0.00 35.37 4.09
2064 2111 2.159282 CCCTGACATTGCATTCAAGCTC 60.159 50.000 0.00 0.00 35.37 4.09
2065 2112 1.822990 CCCTGACATTGCATTCAAGCT 59.177 47.619 0.00 0.00 35.37 3.74
2066 2113 1.134907 CCCCTGACATTGCATTCAAGC 60.135 52.381 0.00 0.00 35.37 4.01
2067 2114 1.479323 CCCCCTGACATTGCATTCAAG 59.521 52.381 0.00 0.00 35.37 3.02
2068 2115 1.559368 CCCCCTGACATTGCATTCAA 58.441 50.000 0.00 0.00 36.51 2.69
2069 2116 3.286404 CCCCCTGACATTGCATTCA 57.714 52.632 0.00 0.00 0.00 2.57
2084 2131 0.033109 ATACTTTGCTTCTGGCCCCC 60.033 55.000 0.00 0.00 40.92 5.40
2085 2132 2.298610 GTATACTTTGCTTCTGGCCCC 58.701 52.381 0.00 0.00 40.92 5.80
2086 2133 2.999331 TGTATACTTTGCTTCTGGCCC 58.001 47.619 0.00 0.00 40.92 5.80
2087 2134 3.947834 ACATGTATACTTTGCTTCTGGCC 59.052 43.478 0.00 0.00 40.92 5.36
2088 2135 5.567138 AACATGTATACTTTGCTTCTGGC 57.433 39.130 0.00 0.00 42.22 4.85
2091 2138 9.561069 CCCTATTAACATGTATACTTTGCTTCT 57.439 33.333 0.00 0.00 0.00 2.85
2092 2139 9.555727 TCCCTATTAACATGTATACTTTGCTTC 57.444 33.333 0.00 0.00 0.00 3.86
2093 2140 9.338622 GTCCCTATTAACATGTATACTTTGCTT 57.661 33.333 0.00 3.08 0.00 3.91
2094 2141 8.714906 AGTCCCTATTAACATGTATACTTTGCT 58.285 33.333 0.00 0.00 0.00 3.91
2095 2142 8.904099 AGTCCCTATTAACATGTATACTTTGC 57.096 34.615 0.00 0.00 0.00 3.68
2162 2209 3.230134 CCCAACACAAATTCCTGAAGGA 58.770 45.455 0.00 0.00 43.73 3.36
2163 2210 2.289010 GCCCAACACAAATTCCTGAAGG 60.289 50.000 0.00 0.00 0.00 3.46
2164 2211 2.629617 AGCCCAACACAAATTCCTGAAG 59.370 45.455 0.00 0.00 0.00 3.02
2165 2212 2.364970 CAGCCCAACACAAATTCCTGAA 59.635 45.455 0.00 0.00 0.00 3.02
2166 2213 1.962807 CAGCCCAACACAAATTCCTGA 59.037 47.619 0.00 0.00 0.00 3.86
2167 2214 1.001181 CCAGCCCAACACAAATTCCTG 59.999 52.381 0.00 0.00 0.00 3.86
2168 2215 1.341080 CCAGCCCAACACAAATTCCT 58.659 50.000 0.00 0.00 0.00 3.36
2169 2216 0.321346 CCCAGCCCAACACAAATTCC 59.679 55.000 0.00 0.00 0.00 3.01
2170 2217 0.321346 CCCCAGCCCAACACAAATTC 59.679 55.000 0.00 0.00 0.00 2.17
2171 2218 1.126948 CCCCCAGCCCAACACAAATT 61.127 55.000 0.00 0.00 0.00 1.82
2172 2219 1.536174 CCCCCAGCCCAACACAAAT 60.536 57.895 0.00 0.00 0.00 2.32
2173 2220 2.123077 CCCCCAGCCCAACACAAA 60.123 61.111 0.00 0.00 0.00 2.83
2196 2243 1.204113 ATAGCTGAGGGGGCTATGCC 61.204 60.000 0.00 0.00 46.98 4.40
2197 2244 2.381445 ATAGCTGAGGGGGCTATGC 58.619 57.895 0.00 0.00 46.98 3.14
2200 2247 1.219469 TGTGTATAGCTGAGGGGGCTA 59.781 52.381 0.00 0.00 44.76 3.93
2201 2248 0.031111 TGTGTATAGCTGAGGGGGCT 60.031 55.000 0.00 0.00 43.02 5.19
2202 2249 1.059913 ATGTGTATAGCTGAGGGGGC 58.940 55.000 0.00 0.00 0.00 5.80
2203 2250 2.834549 CCTATGTGTATAGCTGAGGGGG 59.165 54.545 0.00 0.00 35.88 5.40
2204 2251 3.511477 ACCTATGTGTATAGCTGAGGGG 58.489 50.000 0.00 0.00 35.88 4.79
2205 2252 3.511934 GGACCTATGTGTATAGCTGAGGG 59.488 52.174 0.00 0.00 35.88 4.30
2206 2253 3.191581 CGGACCTATGTGTATAGCTGAGG 59.808 52.174 0.00 0.00 35.88 3.86
2207 2254 3.366476 GCGGACCTATGTGTATAGCTGAG 60.366 52.174 0.00 0.00 35.88 3.35
2208 2255 2.557056 GCGGACCTATGTGTATAGCTGA 59.443 50.000 0.00 0.00 35.88 4.26
2209 2256 2.352814 GGCGGACCTATGTGTATAGCTG 60.353 54.545 0.00 0.00 35.88 4.24
2210 2257 1.893801 GGCGGACCTATGTGTATAGCT 59.106 52.381 0.00 0.00 35.88 3.32
2211 2258 1.616865 TGGCGGACCTATGTGTATAGC 59.383 52.381 0.00 0.00 35.88 2.97
2212 2259 4.537135 AATGGCGGACCTATGTGTATAG 57.463 45.455 0.00 0.00 36.77 1.31
2213 2260 5.046878 CCTTAATGGCGGACCTATGTGTATA 60.047 44.000 0.00 0.00 36.63 1.47
2214 2261 4.262894 CCTTAATGGCGGACCTATGTGTAT 60.263 45.833 0.00 0.00 36.63 2.29
2215 2262 3.070446 CCTTAATGGCGGACCTATGTGTA 59.930 47.826 0.00 0.00 36.63 2.90
2216 2263 2.158813 CCTTAATGGCGGACCTATGTGT 60.159 50.000 0.00 0.00 36.63 3.72
2217 2264 2.104111 TCCTTAATGGCGGACCTATGTG 59.896 50.000 0.00 0.00 36.63 3.21
2218 2265 2.404559 TCCTTAATGGCGGACCTATGT 58.595 47.619 0.00 0.00 36.63 2.29
2219 2266 3.485463 TTCCTTAATGGCGGACCTATG 57.515 47.619 0.00 0.00 36.63 2.23
2220 2267 3.181443 CCTTTCCTTAATGGCGGACCTAT 60.181 47.826 0.00 0.00 36.63 2.57
2221 2268 2.171870 CCTTTCCTTAATGGCGGACCTA 59.828 50.000 0.00 0.00 36.63 3.08
2222 2269 1.064685 CCTTTCCTTAATGGCGGACCT 60.065 52.381 0.00 0.00 36.63 3.85
2223 2270 1.340697 ACCTTTCCTTAATGGCGGACC 60.341 52.381 0.00 0.00 34.05 4.46
2224 2271 2.124277 ACCTTTCCTTAATGGCGGAC 57.876 50.000 0.00 0.00 34.05 4.79
2225 2272 2.841881 AGTACCTTTCCTTAATGGCGGA 59.158 45.455 0.00 0.00 34.05 5.54
2226 2273 3.277142 AGTACCTTTCCTTAATGGCGG 57.723 47.619 0.00 0.00 34.05 6.13
2227 2274 3.181500 GCAAGTACCTTTCCTTAATGGCG 60.181 47.826 0.00 0.00 34.05 5.69
2228 2275 4.017126 AGCAAGTACCTTTCCTTAATGGC 58.983 43.478 0.00 0.00 34.05 4.40
2229 2276 5.163754 CGAAGCAAGTACCTTTCCTTAATGG 60.164 44.000 0.00 0.00 36.27 3.16
2230 2277 5.163754 CCGAAGCAAGTACCTTTCCTTAATG 60.164 44.000 0.00 0.00 0.00 1.90
2231 2278 4.941873 CCGAAGCAAGTACCTTTCCTTAAT 59.058 41.667 0.00 0.00 0.00 1.40
2232 2279 4.202388 ACCGAAGCAAGTACCTTTCCTTAA 60.202 41.667 0.00 0.00 0.00 1.85
2233 2280 3.325716 ACCGAAGCAAGTACCTTTCCTTA 59.674 43.478 0.00 0.00 0.00 2.69
2234 2281 2.105993 ACCGAAGCAAGTACCTTTCCTT 59.894 45.455 0.00 0.00 0.00 3.36
2254 2301 3.397849 ACGTACCAGGGAAGAAAAGAC 57.602 47.619 0.00 0.00 0.00 3.01
2294 2341 0.394938 TTTACGAAGAGCTGCCACCA 59.605 50.000 0.00 0.00 0.00 4.17
2300 2347 6.456988 GGGTTCACATTATTTACGAAGAGCTG 60.457 42.308 0.00 0.00 0.00 4.24
2323 2370 3.385755 CCTAGGAATTGCAAAATGAGGGG 59.614 47.826 1.05 0.00 0.00 4.79
2324 2371 4.280819 TCCTAGGAATTGCAAAATGAGGG 58.719 43.478 9.71 2.86 0.00 4.30
2328 2375 4.293415 GCGATCCTAGGAATTGCAAAATG 58.707 43.478 17.30 0.00 0.00 2.32
2338 2385 3.054728 TGATGTTTTGGCGATCCTAGGAA 60.055 43.478 17.30 0.00 0.00 3.36
2341 2388 2.289002 GCTGATGTTTTGGCGATCCTAG 59.711 50.000 0.00 0.00 0.00 3.02
2343 2390 1.098050 GCTGATGTTTTGGCGATCCT 58.902 50.000 0.00 0.00 0.00 3.24
2345 2392 1.064654 GGAGCTGATGTTTTGGCGATC 59.935 52.381 0.00 0.00 0.00 3.69
2368 2415 2.356695 AGACGGGTTGTAGTGCAAAAAC 59.643 45.455 0.00 0.00 39.03 2.43
2422 2469 4.741781 CGAAGCTGCGCCAAACGG 62.742 66.667 0.00 0.00 43.93 4.44
2440 2487 3.870419 CCTGATTTCTCTAAGTCAGCAGC 59.130 47.826 5.41 0.00 44.15 5.25
2457 2504 1.244019 GCAAACGCCCAACTCCTGAT 61.244 55.000 0.00 0.00 0.00 2.90
2458 2505 1.896660 GCAAACGCCCAACTCCTGA 60.897 57.895 0.00 0.00 0.00 3.86
2476 2523 4.087182 TCATACTCTTAGGGCCTATTCGG 58.913 47.826 15.37 7.82 0.00 4.30
2628 2677 9.671279 CCCAATGTAGCATCTATTATCATTGTA 57.329 33.333 0.00 0.00 38.98 2.41
2629 2678 8.166061 ACCCAATGTAGCATCTATTATCATTGT 58.834 33.333 0.00 0.00 38.98 2.71
2630 2679 8.571461 ACCCAATGTAGCATCTATTATCATTG 57.429 34.615 0.00 0.00 39.76 2.82
2631 2680 9.896645 CTACCCAATGTAGCATCTATTATCATT 57.103 33.333 0.00 0.00 40.53 2.57
2632 2681 8.489489 CCTACCCAATGTAGCATCTATTATCAT 58.511 37.037 0.00 0.00 44.77 2.45
2633 2682 7.678171 TCCTACCCAATGTAGCATCTATTATCA 59.322 37.037 0.00 0.00 44.77 2.15
2634 2683 7.982354 GTCCTACCCAATGTAGCATCTATTATC 59.018 40.741 0.00 0.00 44.77 1.75
2635 2684 7.457852 TGTCCTACCCAATGTAGCATCTATTAT 59.542 37.037 0.00 0.00 44.77 1.28
2682 2731 7.915397 GGTACAAAATCATGGCAAGTTAGTATG 59.085 37.037 0.00 0.00 0.00 2.39
2683 2732 7.068226 GGGTACAAAATCATGGCAAGTTAGTAT 59.932 37.037 0.00 0.00 0.00 2.12
2684 2733 6.376018 GGGTACAAAATCATGGCAAGTTAGTA 59.624 38.462 0.00 0.00 0.00 1.82
2689 2738 2.831526 GGGGTACAAAATCATGGCAAGT 59.168 45.455 0.00 0.00 0.00 3.16
2690 2739 2.168313 GGGGGTACAAAATCATGGCAAG 59.832 50.000 0.00 0.00 0.00 4.01
2691 2740 2.183679 GGGGGTACAAAATCATGGCAA 58.816 47.619 0.00 0.00 0.00 4.52
2692 2741 1.077828 TGGGGGTACAAAATCATGGCA 59.922 47.619 0.00 0.00 0.00 4.92
2693 2742 1.480545 GTGGGGGTACAAAATCATGGC 59.519 52.381 0.00 0.00 0.00 4.40
2694 2743 2.107366 GGTGGGGGTACAAAATCATGG 58.893 52.381 0.00 0.00 0.00 3.66
2695 2744 2.813907 TGGTGGGGGTACAAAATCATG 58.186 47.619 0.00 0.00 0.00 3.07
2696 2745 3.245948 ACATGGTGGGGGTACAAAATCAT 60.246 43.478 0.00 0.00 0.00 2.45
2697 2746 2.110899 ACATGGTGGGGGTACAAAATCA 59.889 45.455 0.00 0.00 0.00 2.57
2698 2747 2.495669 CACATGGTGGGGGTACAAAATC 59.504 50.000 0.00 0.00 0.00 2.17
2699 2748 2.158234 ACACATGGTGGGGGTACAAAAT 60.158 45.455 0.00 0.00 37.94 1.82
2700 2749 1.218196 ACACATGGTGGGGGTACAAAA 59.782 47.619 0.00 0.00 37.94 2.44
2701 2750 0.854218 ACACATGGTGGGGGTACAAA 59.146 50.000 0.00 0.00 37.94 2.83
2702 2751 0.111446 CACACATGGTGGGGGTACAA 59.889 55.000 0.00 0.00 44.04 2.41
2703 2752 1.764422 CACACATGGTGGGGGTACA 59.236 57.895 0.00 0.00 44.04 2.90
2704 2753 4.734652 CACACATGGTGGGGGTAC 57.265 61.111 0.00 0.00 44.04 3.34
2712 2761 5.129634 TGTGAATCTTGTAACACACATGGT 58.870 37.500 0.00 0.00 38.14 3.55
2713 2762 5.687770 TGTGAATCTTGTAACACACATGG 57.312 39.130 0.00 0.00 38.14 3.66
2714 2763 6.144854 CCTTGTGAATCTTGTAACACACATG 58.855 40.000 0.00 0.00 41.78 3.21
2715 2764 5.241506 CCCTTGTGAATCTTGTAACACACAT 59.758 40.000 0.00 0.00 41.78 3.21
2716 2765 4.578516 CCCTTGTGAATCTTGTAACACACA 59.421 41.667 0.00 0.00 41.78 3.72
2717 2766 4.819630 TCCCTTGTGAATCTTGTAACACAC 59.180 41.667 0.00 0.00 41.78 3.82
2718 2767 4.819630 GTCCCTTGTGAATCTTGTAACACA 59.180 41.667 0.00 0.00 40.66 3.72
2719 2768 4.084013 CGTCCCTTGTGAATCTTGTAACAC 60.084 45.833 0.00 0.00 0.00 3.32
2720 2769 4.062293 CGTCCCTTGTGAATCTTGTAACA 58.938 43.478 0.00 0.00 0.00 2.41
2721 2770 4.062991 ACGTCCCTTGTGAATCTTGTAAC 58.937 43.478 0.00 0.00 0.00 2.50
2722 2771 4.062293 CACGTCCCTTGTGAATCTTGTAA 58.938 43.478 0.00 0.00 39.73 2.41
2723 2772 3.070446 ACACGTCCCTTGTGAATCTTGTA 59.930 43.478 0.00 0.00 39.73 2.41
2724 2773 2.158813 ACACGTCCCTTGTGAATCTTGT 60.159 45.455 0.00 0.00 39.73 3.16
2725 2774 2.494059 ACACGTCCCTTGTGAATCTTG 58.506 47.619 0.00 0.00 39.73 3.02
2726 2775 2.930826 ACACGTCCCTTGTGAATCTT 57.069 45.000 0.00 0.00 39.73 2.40
2727 2776 2.878406 CAAACACGTCCCTTGTGAATCT 59.122 45.455 0.00 0.00 39.73 2.40
2728 2777 2.031157 CCAAACACGTCCCTTGTGAATC 60.031 50.000 0.00 0.00 39.73 2.52
2729 2778 1.953686 CCAAACACGTCCCTTGTGAAT 59.046 47.619 0.00 0.00 39.73 2.57
2730 2779 1.340211 ACCAAACACGTCCCTTGTGAA 60.340 47.619 0.00 0.00 39.73 3.18
2731 2780 0.253610 ACCAAACACGTCCCTTGTGA 59.746 50.000 0.00 0.00 39.73 3.58
2732 2781 1.099689 AACCAAACACGTCCCTTGTG 58.900 50.000 0.00 0.00 42.99 3.33
2733 2782 1.099689 CAACCAAACACGTCCCTTGT 58.900 50.000 0.00 0.00 0.00 3.16
2734 2783 0.248866 GCAACCAAACACGTCCCTTG 60.249 55.000 0.00 0.00 0.00 3.61
2735 2784 1.388837 GGCAACCAAACACGTCCCTT 61.389 55.000 0.00 0.00 0.00 3.95
2736 2785 1.826487 GGCAACCAAACACGTCCCT 60.826 57.895 0.00 0.00 0.00 4.20
2737 2786 1.826487 AGGCAACCAAACACGTCCC 60.826 57.895 0.00 0.00 37.17 4.46
2738 2787 1.358759 CAGGCAACCAAACACGTCC 59.641 57.895 0.00 0.00 37.17 4.79
2739 2788 1.299089 GCAGGCAACCAAACACGTC 60.299 57.895 0.00 0.00 37.17 4.34
2740 2789 1.391157 ATGCAGGCAACCAAACACGT 61.391 50.000 0.00 0.00 37.17 4.49
2741 2790 0.595588 TATGCAGGCAACCAAACACG 59.404 50.000 0.00 0.00 37.17 4.49
2742 2791 1.339610 TGTATGCAGGCAACCAAACAC 59.660 47.619 0.00 0.00 37.17 3.32
2743 2792 1.339610 GTGTATGCAGGCAACCAAACA 59.660 47.619 0.00 0.00 37.17 2.83
2744 2793 1.336795 GGTGTATGCAGGCAACCAAAC 60.337 52.381 8.38 0.00 37.17 2.93
2745 2794 0.965439 GGTGTATGCAGGCAACCAAA 59.035 50.000 8.38 0.00 37.17 3.28
2746 2795 0.112218 AGGTGTATGCAGGCAACCAA 59.888 50.000 14.19 0.00 37.17 3.67
2747 2796 0.322456 GAGGTGTATGCAGGCAACCA 60.322 55.000 14.19 4.64 37.17 3.67
2748 2797 1.369091 CGAGGTGTATGCAGGCAACC 61.369 60.000 5.65 5.65 37.17 3.77
2749 2798 0.391130 TCGAGGTGTATGCAGGCAAC 60.391 55.000 0.00 0.00 0.00 4.17
2750 2799 0.391130 GTCGAGGTGTATGCAGGCAA 60.391 55.000 0.00 0.00 0.00 4.52
2751 2800 1.218047 GTCGAGGTGTATGCAGGCA 59.782 57.895 0.00 0.00 0.00 4.75
2752 2801 1.521681 GGTCGAGGTGTATGCAGGC 60.522 63.158 0.00 0.00 0.00 4.85
2753 2802 0.179100 CTGGTCGAGGTGTATGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
2754 2803 0.179100 CCTGGTCGAGGTGTATGCAG 60.179 60.000 0.00 0.00 37.02 4.41
2755 2804 1.897423 CCTGGTCGAGGTGTATGCA 59.103 57.895 0.00 0.00 37.02 3.96
2756 2805 1.521681 GCCTGGTCGAGGTGTATGC 60.522 63.158 2.53 0.00 44.97 3.14
2757 2806 1.144057 GGCCTGGTCGAGGTGTATG 59.856 63.158 0.00 0.00 44.97 2.39
2758 2807 2.064581 GGGCCTGGTCGAGGTGTAT 61.065 63.158 0.84 0.00 44.97 2.29
2759 2808 2.682494 GGGCCTGGTCGAGGTGTA 60.682 66.667 0.84 0.00 44.97 2.90
2775 2824 4.830765 TGAATCCTTCCCGCGCGG 62.831 66.667 41.00 41.00 0.00 6.46
2776 2825 2.817834 TTGAATCCTTCCCGCGCG 60.818 61.111 25.67 25.67 0.00 6.86
2777 2826 1.376609 ATGTTGAATCCTTCCCGCGC 61.377 55.000 0.00 0.00 0.00 6.86
2778 2827 0.378257 CATGTTGAATCCTTCCCGCG 59.622 55.000 0.00 0.00 0.00 6.46
2779 2828 1.463674 ACATGTTGAATCCTTCCCGC 58.536 50.000 0.00 0.00 0.00 6.13
2780 2829 3.367292 CCAAACATGTTGAATCCTTCCCG 60.367 47.826 12.82 0.00 0.00 5.14
2781 2830 3.578282 ACCAAACATGTTGAATCCTTCCC 59.422 43.478 12.82 0.00 0.00 3.97
2782 2831 4.871933 ACCAAACATGTTGAATCCTTCC 57.128 40.909 12.82 0.00 0.00 3.46
2783 2832 5.402398 GCTACCAAACATGTTGAATCCTTC 58.598 41.667 12.82 0.00 0.00 3.46
2784 2833 4.220602 GGCTACCAAACATGTTGAATCCTT 59.779 41.667 12.82 0.00 0.00 3.36
2785 2834 3.763897 GGCTACCAAACATGTTGAATCCT 59.236 43.478 12.82 0.00 0.00 3.24
2786 2835 3.119137 GGGCTACCAAACATGTTGAATCC 60.119 47.826 12.82 8.77 36.50 3.01
2787 2836 3.427503 CGGGCTACCAAACATGTTGAATC 60.428 47.826 12.82 0.00 36.13 2.52
2788 2837 2.491693 CGGGCTACCAAACATGTTGAAT 59.508 45.455 12.82 2.94 36.13 2.57
2789 2838 1.883275 CGGGCTACCAAACATGTTGAA 59.117 47.619 12.82 0.00 36.13 2.69
2790 2839 1.529226 CGGGCTACCAAACATGTTGA 58.471 50.000 12.82 0.00 36.13 3.18
2791 2840 0.109319 GCGGGCTACCAAACATGTTG 60.109 55.000 12.82 2.87 36.13 3.33
2792 2841 0.538516 TGCGGGCTACCAAACATGTT 60.539 50.000 4.92 4.92 36.13 2.71
2793 2842 0.323360 ATGCGGGCTACCAAACATGT 60.323 50.000 0.00 0.00 36.13 3.21
2794 2843 1.674359 TATGCGGGCTACCAAACATG 58.326 50.000 0.00 0.00 36.13 3.21
2795 2844 2.656947 ATATGCGGGCTACCAAACAT 57.343 45.000 0.00 0.00 36.13 2.71
2796 2845 3.780804 ATATATGCGGGCTACCAAACA 57.219 42.857 0.00 0.00 36.13 2.83
2797 2846 3.818773 ACAATATATGCGGGCTACCAAAC 59.181 43.478 0.00 0.00 36.13 2.93
2798 2847 4.093472 ACAATATATGCGGGCTACCAAA 57.907 40.909 0.00 0.00 36.13 3.28
2799 2848 3.780804 ACAATATATGCGGGCTACCAA 57.219 42.857 0.00 0.00 36.13 3.67
2800 2849 3.407698 CAACAATATATGCGGGCTACCA 58.592 45.455 0.00 0.00 36.13 3.25
2801 2850 2.747446 CCAACAATATATGCGGGCTACC 59.253 50.000 0.00 0.00 0.00 3.18
2802 2851 2.747446 CCCAACAATATATGCGGGCTAC 59.253 50.000 0.00 0.00 38.02 3.58
2803 2852 3.066291 CCCAACAATATATGCGGGCTA 57.934 47.619 0.00 0.00 38.02 3.93
2804 2853 1.909700 CCCAACAATATATGCGGGCT 58.090 50.000 0.00 0.00 38.02 5.19
2806 2855 0.887933 GGCCCAACAATATATGCGGG 59.112 55.000 0.00 0.00 44.47 6.13
2807 2856 1.541147 CAGGCCCAACAATATATGCGG 59.459 52.381 0.00 0.00 0.00 5.69
2808 2857 1.068333 GCAGGCCCAACAATATATGCG 60.068 52.381 0.00 0.00 0.00 4.73
2809 2858 1.962807 TGCAGGCCCAACAATATATGC 59.037 47.619 0.00 0.00 0.00 3.14
2810 2859 4.142315 GCTATGCAGGCCCAACAATATATG 60.142 45.833 0.00 0.00 0.00 1.78
2811 2860 4.019174 GCTATGCAGGCCCAACAATATAT 58.981 43.478 0.00 0.00 0.00 0.86
2812 2861 3.181435 TGCTATGCAGGCCCAACAATATA 60.181 43.478 0.00 0.00 33.32 0.86
2813 2862 2.242043 GCTATGCAGGCCCAACAATAT 58.758 47.619 0.00 0.00 0.00 1.28
2814 2863 1.064091 TGCTATGCAGGCCCAACAATA 60.064 47.619 0.00 0.00 33.32 1.90
2815 2864 0.324552 TGCTATGCAGGCCCAACAAT 60.325 50.000 0.00 0.00 33.32 2.71
2816 2865 1.076370 TGCTATGCAGGCCCAACAA 59.924 52.632 0.00 0.00 33.32 2.83
2817 2866 1.678635 GTGCTATGCAGGCCCAACA 60.679 57.895 0.00 0.00 40.08 3.33
2818 2867 2.764314 CGTGCTATGCAGGCCCAAC 61.764 63.158 0.00 3.47 40.08 3.77
2819 2868 2.438254 CGTGCTATGCAGGCCCAA 60.438 61.111 0.00 0.00 40.08 4.12
2820 2869 2.476852 TTTCGTGCTATGCAGGCCCA 62.477 55.000 0.00 0.00 43.03 5.36
2821 2870 1.748879 TTTCGTGCTATGCAGGCCC 60.749 57.895 0.00 0.12 43.03 5.80
2822 2871 1.026718 AGTTTCGTGCTATGCAGGCC 61.027 55.000 11.16 0.00 43.03 5.19
2823 2872 0.804989 AAGTTTCGTGCTATGCAGGC 59.195 50.000 7.40 7.40 43.03 4.85
2824 2873 4.651994 CTTTAAGTTTCGTGCTATGCAGG 58.348 43.478 5.97 5.97 44.42 4.85
2825 2874 4.091424 GCTTTAAGTTTCGTGCTATGCAG 58.909 43.478 0.00 0.00 40.08 4.41
2826 2875 3.500299 TGCTTTAAGTTTCGTGCTATGCA 59.500 39.130 0.00 0.00 35.60 3.96
2827 2876 3.846335 GTGCTTTAAGTTTCGTGCTATGC 59.154 43.478 0.00 0.00 0.00 3.14
2828 2877 4.154195 AGGTGCTTTAAGTTTCGTGCTATG 59.846 41.667 0.00 0.00 0.00 2.23
2829 2878 4.324267 AGGTGCTTTAAGTTTCGTGCTAT 58.676 39.130 0.00 0.00 0.00 2.97
2830 2879 3.735591 AGGTGCTTTAAGTTTCGTGCTA 58.264 40.909 0.00 0.00 0.00 3.49
2831 2880 2.548480 GAGGTGCTTTAAGTTTCGTGCT 59.452 45.455 0.00 0.00 0.00 4.40
2832 2881 2.548480 AGAGGTGCTTTAAGTTTCGTGC 59.452 45.455 0.00 0.00 0.00 5.34
2833 2882 4.389077 CCTAGAGGTGCTTTAAGTTTCGTG 59.611 45.833 0.00 0.00 0.00 4.35
2834 2883 4.566987 CCTAGAGGTGCTTTAAGTTTCGT 58.433 43.478 0.00 0.00 0.00 3.85
2849 2898 0.177604 CAGCAAGCCAGACCTAGAGG 59.822 60.000 0.00 0.00 42.17 3.69
2850 2899 0.177604 CCAGCAAGCCAGACCTAGAG 59.822 60.000 0.00 0.00 0.00 2.43
2851 2900 0.252239 TCCAGCAAGCCAGACCTAGA 60.252 55.000 0.00 0.00 0.00 2.43
2852 2901 0.615331 TTCCAGCAAGCCAGACCTAG 59.385 55.000 0.00 0.00 0.00 3.02
2853 2902 1.064003 TTTCCAGCAAGCCAGACCTA 58.936 50.000 0.00 0.00 0.00 3.08
2854 2903 0.538287 GTTTCCAGCAAGCCAGACCT 60.538 55.000 0.00 0.00 0.00 3.85
2855 2904 0.823356 TGTTTCCAGCAAGCCAGACC 60.823 55.000 0.00 0.00 0.00 3.85
2856 2905 0.312102 GTGTTTCCAGCAAGCCAGAC 59.688 55.000 0.00 0.00 0.00 3.51
2857 2906 0.183492 AGTGTTTCCAGCAAGCCAGA 59.817 50.000 0.00 0.00 0.00 3.86
2858 2907 0.595095 GAGTGTTTCCAGCAAGCCAG 59.405 55.000 0.00 0.00 0.00 4.85
2859 2908 2.719376 GAGTGTTTCCAGCAAGCCA 58.281 52.632 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.