Multiple sequence alignment - TraesCS6B01G425300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G425300 chr6B 100.000 3376 0 0 1 3376 694339611 694342986 0.000000e+00 6235.0
1 TraesCS6B01G425300 chr6D 88.920 1796 106 31 278 2051 456542767 456544491 0.000000e+00 2128.0
2 TraesCS6B01G425300 chr6D 88.213 1315 103 30 2081 3376 456544549 456545830 0.000000e+00 1522.0
3 TraesCS6B01G425300 chr6A 89.541 937 65 19 2190 3115 603268057 603268971 0.000000e+00 1157.0
4 TraesCS6B01G425300 chr6A 88.947 760 40 18 787 1531 603266591 603267321 0.000000e+00 898.0
5 TraesCS6B01G425300 chr6A 90.977 532 29 12 1552 2072 603267404 603267927 0.000000e+00 699.0
6 TraesCS6B01G425300 chr6A 88.500 200 17 2 3178 3376 603268957 603269151 1.570000e-58 237.0
7 TraesCS6B01G425300 chr2D 88.889 63 2 2 3116 3178 529653042 529652985 4.670000e-09 73.1
8 TraesCS6B01G425300 chr5A 97.222 36 1 0 3117 3152 585806390 585806355 1.010000e-05 62.1
9 TraesCS6B01G425300 chr4A 100.000 28 0 0 628 655 472954521 472954494 6.000000e-03 52.8
10 TraesCS6B01G425300 chr3A 100.000 28 0 0 3118 3145 27062260 27062287 6.000000e-03 52.8
11 TraesCS6B01G425300 chr3A 100.000 28 0 0 3118 3145 27116928 27116955 6.000000e-03 52.8
12 TraesCS6B01G425300 chr3A 100.000 28 0 0 3118 3145 27156102 27156129 6.000000e-03 52.8
13 TraesCS6B01G425300 chr3A 100.000 28 0 0 3118 3145 27206021 27206048 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G425300 chr6B 694339611 694342986 3375 False 6235.00 6235 100.00000 1 3376 1 chr6B.!!$F1 3375
1 TraesCS6B01G425300 chr6D 456542767 456545830 3063 False 1825.00 2128 88.56650 278 3376 2 chr6D.!!$F1 3098
2 TraesCS6B01G425300 chr6A 603266591 603269151 2560 False 747.75 1157 89.49125 787 3376 4 chr6A.!!$F1 2589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.106268 TGATGGCCACAACAACCACT 60.106 50.0 8.16 0.0 35.99 4.00 F
411 412 0.251922 ACAAAGCACCATGCCCATCT 60.252 50.0 0.00 0.0 46.52 2.90 F
895 905 0.269173 ACCTCCCCTTATCCCCTCTG 59.731 60.0 0.00 0.0 0.00 3.35 F
1709 1808 0.392193 CTGCTCAGTCCATCCACCAC 60.392 60.0 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2229 0.035056 GGCCACTACTCATTGCCAGT 60.035 55.000 0.00 0.0 41.76 4.00 R
2118 2244 0.252057 TAGGTGCTAGTGTGAGGCCA 60.252 55.000 5.01 0.0 0.00 5.36 R
2119 2245 0.902531 TTAGGTGCTAGTGTGAGGCC 59.097 55.000 0.00 0.0 0.00 5.19 R
3084 3250 2.029110 TGTCATGATTGCTCTGTCACGA 60.029 45.455 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.154827 ACCAGGTGTAGTGGATTTTGG 57.845 47.619 0.00 0.00 38.57 3.28
22 23 2.445525 ACCAGGTGTAGTGGATTTTGGT 59.554 45.455 0.00 0.00 38.57 3.67
23 24 3.117284 ACCAGGTGTAGTGGATTTTGGTT 60.117 43.478 0.00 0.00 38.57 3.67
24 25 3.506067 CCAGGTGTAGTGGATTTTGGTTC 59.494 47.826 0.00 0.00 37.23 3.62
25 26 3.506067 CAGGTGTAGTGGATTTTGGTTCC 59.494 47.826 0.00 0.00 0.00 3.62
26 27 3.139397 AGGTGTAGTGGATTTTGGTTCCA 59.861 43.478 0.00 0.00 40.96 3.53
27 28 3.892588 GGTGTAGTGGATTTTGGTTCCAA 59.107 43.478 0.00 0.00 44.62 3.53
28 29 4.526650 GGTGTAGTGGATTTTGGTTCCAAT 59.473 41.667 5.06 0.00 44.62 3.16
29 30 5.336451 GGTGTAGTGGATTTTGGTTCCAATC 60.336 44.000 5.06 1.39 44.62 2.67
30 31 5.476945 GTGTAGTGGATTTTGGTTCCAATCT 59.523 40.000 5.06 0.00 44.62 2.40
31 32 6.657541 GTGTAGTGGATTTTGGTTCCAATCTA 59.342 38.462 5.06 0.00 44.62 1.98
32 33 6.884295 TGTAGTGGATTTTGGTTCCAATCTAG 59.116 38.462 5.06 0.00 44.62 2.43
33 34 6.139679 AGTGGATTTTGGTTCCAATCTAGA 57.860 37.500 5.06 0.00 44.62 2.43
34 35 6.183347 AGTGGATTTTGGTTCCAATCTAGAG 58.817 40.000 5.06 0.00 44.62 2.43
35 36 5.946377 GTGGATTTTGGTTCCAATCTAGAGT 59.054 40.000 5.06 0.00 44.62 3.24
36 37 5.945784 TGGATTTTGGTTCCAATCTAGAGTG 59.054 40.000 13.23 13.23 40.29 3.51
37 38 5.946377 GGATTTTGGTTCCAATCTAGAGTGT 59.054 40.000 18.19 0.00 33.21 3.55
38 39 6.434340 GGATTTTGGTTCCAATCTAGAGTGTT 59.566 38.462 18.19 0.00 33.21 3.32
39 40 7.039714 GGATTTTGGTTCCAATCTAGAGTGTTT 60.040 37.037 18.19 0.00 33.21 2.83
40 41 6.633500 TTTGGTTCCAATCTAGAGTGTTTG 57.367 37.500 18.19 7.97 0.00 2.93
41 42 5.304686 TGGTTCCAATCTAGAGTGTTTGT 57.695 39.130 18.19 0.00 0.00 2.83
42 43 5.690865 TGGTTCCAATCTAGAGTGTTTGTT 58.309 37.500 18.19 0.00 0.00 2.83
43 44 5.530915 TGGTTCCAATCTAGAGTGTTTGTTG 59.469 40.000 18.19 6.27 0.00 3.33
44 45 5.763204 GGTTCCAATCTAGAGTGTTTGTTGA 59.237 40.000 18.19 5.13 0.00 3.18
45 46 6.293462 GGTTCCAATCTAGAGTGTTTGTTGAC 60.293 42.308 18.19 6.40 0.00 3.18
46 47 6.174720 TCCAATCTAGAGTGTTTGTTGACT 57.825 37.500 18.19 0.00 0.00 3.41
47 48 6.591935 TCCAATCTAGAGTGTTTGTTGACTT 58.408 36.000 18.19 0.00 0.00 3.01
48 49 6.483307 TCCAATCTAGAGTGTTTGTTGACTTG 59.517 38.462 18.19 3.57 0.00 3.16
49 50 6.483307 CCAATCTAGAGTGTTTGTTGACTTGA 59.517 38.462 18.19 0.00 0.00 3.02
50 51 7.307632 CCAATCTAGAGTGTTTGTTGACTTGAG 60.308 40.741 18.19 0.00 0.00 3.02
51 52 6.222038 TCTAGAGTGTTTGTTGACTTGAGT 57.778 37.500 0.00 0.00 0.00 3.41
52 53 6.640518 TCTAGAGTGTTTGTTGACTTGAGTT 58.359 36.000 0.00 0.00 0.00 3.01
53 54 5.803020 AGAGTGTTTGTTGACTTGAGTTC 57.197 39.130 0.00 0.00 0.00 3.01
54 55 5.491982 AGAGTGTTTGTTGACTTGAGTTCT 58.508 37.500 0.00 0.00 0.00 3.01
55 56 6.640518 AGAGTGTTTGTTGACTTGAGTTCTA 58.359 36.000 0.00 0.00 0.00 2.10
56 57 7.275920 AGAGTGTTTGTTGACTTGAGTTCTAT 58.724 34.615 0.00 0.00 0.00 1.98
57 58 7.439655 AGAGTGTTTGTTGACTTGAGTTCTATC 59.560 37.037 0.00 0.00 0.00 2.08
58 59 7.275920 AGTGTTTGTTGACTTGAGTTCTATCT 58.724 34.615 0.00 0.00 0.00 1.98
59 60 7.439655 AGTGTTTGTTGACTTGAGTTCTATCTC 59.560 37.037 0.00 0.00 35.28 2.75
60 61 7.224753 GTGTTTGTTGACTTGAGTTCTATCTCA 59.775 37.037 0.00 0.00 41.85 3.27
71 72 7.187824 TGAGTTCTATCTCAAAAGGCTATGT 57.812 36.000 0.00 0.00 40.82 2.29
72 73 8.306313 TGAGTTCTATCTCAAAAGGCTATGTA 57.694 34.615 0.00 0.00 40.82 2.29
73 74 8.928448 TGAGTTCTATCTCAAAAGGCTATGTAT 58.072 33.333 0.00 0.00 40.82 2.29
74 75 9.418045 GAGTTCTATCTCAAAAGGCTATGTATC 57.582 37.037 0.00 0.00 34.88 2.24
75 76 8.928448 AGTTCTATCTCAAAAGGCTATGTATCA 58.072 33.333 0.00 0.00 0.00 2.15
76 77 9.717942 GTTCTATCTCAAAAGGCTATGTATCAT 57.282 33.333 0.00 0.00 0.00 2.45
78 79 9.716531 TCTATCTCAAAAGGCTATGTATCATTG 57.283 33.333 0.00 0.00 0.00 2.82
79 80 9.716531 CTATCTCAAAAGGCTATGTATCATTGA 57.283 33.333 0.00 0.00 0.00 2.57
80 81 8.618702 ATCTCAAAAGGCTATGTATCATTGAG 57.381 34.615 0.00 0.00 42.25 3.02
81 82 7.568349 TCTCAAAAGGCTATGTATCATTGAGT 58.432 34.615 10.79 0.00 41.82 3.41
82 83 8.049117 TCTCAAAAGGCTATGTATCATTGAGTT 58.951 33.333 10.79 0.00 41.82 3.01
83 84 8.579850 TCAAAAGGCTATGTATCATTGAGTTT 57.420 30.769 0.00 0.00 0.00 2.66
84 85 9.023962 TCAAAAGGCTATGTATCATTGAGTTTT 57.976 29.630 0.00 0.00 0.00 2.43
114 115 8.921353 TTGAGTAGGTATCACTAGTTATCTCC 57.079 38.462 0.00 0.00 0.00 3.71
115 116 7.460071 TGAGTAGGTATCACTAGTTATCTCCC 58.540 42.308 0.00 0.00 0.00 4.30
116 117 7.073343 TGAGTAGGTATCACTAGTTATCTCCCA 59.927 40.741 0.00 0.00 0.00 4.37
117 118 7.823635 AGTAGGTATCACTAGTTATCTCCCAA 58.176 38.462 0.00 0.00 0.00 4.12
118 119 6.980416 AGGTATCACTAGTTATCTCCCAAC 57.020 41.667 0.00 0.00 0.00 3.77
119 120 6.684538 AGGTATCACTAGTTATCTCCCAACT 58.315 40.000 0.00 0.00 39.50 3.16
120 121 7.133483 AGGTATCACTAGTTATCTCCCAACTT 58.867 38.462 0.00 0.00 37.42 2.66
121 122 7.070074 AGGTATCACTAGTTATCTCCCAACTTG 59.930 40.741 0.00 0.00 37.42 3.16
122 123 6.875972 ATCACTAGTTATCTCCCAACTTGT 57.124 37.500 0.00 0.00 40.84 3.16
125 126 6.681729 ACTAGTTATCTCCCAACTTGTGAA 57.318 37.500 0.00 0.00 39.43 3.18
126 127 7.259088 ACTAGTTATCTCCCAACTTGTGAAT 57.741 36.000 0.00 0.00 39.43 2.57
127 128 8.375493 ACTAGTTATCTCCCAACTTGTGAATA 57.625 34.615 0.00 0.00 39.43 1.75
128 129 8.993424 ACTAGTTATCTCCCAACTTGTGAATAT 58.007 33.333 0.00 0.00 39.43 1.28
129 130 9.482627 CTAGTTATCTCCCAACTTGTGAATATC 57.517 37.037 0.00 0.00 37.42 1.63
130 131 6.986817 AGTTATCTCCCAACTTGTGAATATCG 59.013 38.462 0.00 0.00 32.28 2.92
131 132 4.137116 TCTCCCAACTTGTGAATATCGG 57.863 45.455 0.00 0.00 0.00 4.18
132 133 3.118408 TCTCCCAACTTGTGAATATCGGG 60.118 47.826 0.00 0.00 0.00 5.14
133 134 2.841266 TCCCAACTTGTGAATATCGGGA 59.159 45.455 0.00 0.00 39.15 5.14
134 135 2.943033 CCCAACTTGTGAATATCGGGAC 59.057 50.000 0.00 0.00 34.10 4.46
135 136 3.370527 CCCAACTTGTGAATATCGGGACT 60.371 47.826 0.00 0.00 34.10 3.85
136 137 3.623060 CCAACTTGTGAATATCGGGACTG 59.377 47.826 0.00 0.00 0.00 3.51
137 138 2.906354 ACTTGTGAATATCGGGACTGC 58.094 47.619 0.00 0.00 0.00 4.40
138 139 2.236146 ACTTGTGAATATCGGGACTGCA 59.764 45.455 0.00 0.00 0.00 4.41
139 140 3.118261 ACTTGTGAATATCGGGACTGCAT 60.118 43.478 0.00 0.00 0.00 3.96
140 141 2.837498 TGTGAATATCGGGACTGCATG 58.163 47.619 0.00 0.00 0.00 4.06
141 142 1.532868 GTGAATATCGGGACTGCATGC 59.467 52.381 11.82 11.82 0.00 4.06
142 143 1.160137 GAATATCGGGACTGCATGCC 58.840 55.000 16.68 0.00 34.77 4.40
153 154 4.628160 GCATGCCGCATCAGATTG 57.372 55.556 6.36 0.00 41.79 2.67
154 155 1.731700 GCATGCCGCATCAGATTGT 59.268 52.632 6.36 0.00 41.79 2.71
155 156 0.946528 GCATGCCGCATCAGATTGTA 59.053 50.000 6.36 0.00 41.79 2.41
156 157 1.334419 GCATGCCGCATCAGATTGTAC 60.334 52.381 6.36 0.00 41.79 2.90
157 158 1.941975 CATGCCGCATCAGATTGTACA 59.058 47.619 1.86 0.00 0.00 2.90
158 159 1.655484 TGCCGCATCAGATTGTACAG 58.345 50.000 0.00 0.00 0.00 2.74
159 160 1.066215 TGCCGCATCAGATTGTACAGT 60.066 47.619 0.00 0.00 0.00 3.55
160 161 1.328680 GCCGCATCAGATTGTACAGTG 59.671 52.381 0.00 0.00 0.00 3.66
161 162 2.621338 CCGCATCAGATTGTACAGTGT 58.379 47.619 0.00 0.00 0.00 3.55
162 163 3.002791 CCGCATCAGATTGTACAGTGTT 58.997 45.455 0.00 0.00 0.00 3.32
163 164 4.180817 CCGCATCAGATTGTACAGTGTTA 58.819 43.478 0.00 0.00 0.00 2.41
164 165 4.811024 CCGCATCAGATTGTACAGTGTTAT 59.189 41.667 0.00 0.00 0.00 1.89
165 166 5.983118 CCGCATCAGATTGTACAGTGTTATA 59.017 40.000 0.00 0.00 0.00 0.98
166 167 6.646653 CCGCATCAGATTGTACAGTGTTATAT 59.353 38.462 0.00 0.00 0.00 0.86
167 168 7.171508 CCGCATCAGATTGTACAGTGTTATATT 59.828 37.037 0.00 0.00 0.00 1.28
168 169 8.006027 CGCATCAGATTGTACAGTGTTATATTG 58.994 37.037 0.00 0.00 0.00 1.90
169 170 8.830580 GCATCAGATTGTACAGTGTTATATTGT 58.169 33.333 0.00 0.00 33.42 2.71
172 173 9.083080 TCAGATTGTACAGTGTTATATTGTTCG 57.917 33.333 0.00 0.00 31.12 3.95
173 174 8.869897 CAGATTGTACAGTGTTATATTGTTCGT 58.130 33.333 0.00 0.00 31.12 3.85
176 177 8.464770 TTGTACAGTGTTATATTGTTCGTACC 57.535 34.615 0.00 0.00 31.12 3.34
177 178 7.829725 TGTACAGTGTTATATTGTTCGTACCT 58.170 34.615 0.00 0.00 31.12 3.08
178 179 8.306038 TGTACAGTGTTATATTGTTCGTACCTT 58.694 33.333 0.00 0.00 31.12 3.50
179 180 7.591006 ACAGTGTTATATTGTTCGTACCTTG 57.409 36.000 0.00 0.00 0.00 3.61
180 181 7.380536 ACAGTGTTATATTGTTCGTACCTTGA 58.619 34.615 0.00 0.00 0.00 3.02
181 182 8.038944 ACAGTGTTATATTGTTCGTACCTTGAT 58.961 33.333 0.00 0.00 0.00 2.57
182 183 8.328146 CAGTGTTATATTGTTCGTACCTTGATG 58.672 37.037 0.00 0.00 0.00 3.07
183 184 8.038944 AGTGTTATATTGTTCGTACCTTGATGT 58.961 33.333 0.00 0.00 0.00 3.06
184 185 8.662141 GTGTTATATTGTTCGTACCTTGATGTT 58.338 33.333 0.00 0.00 0.00 2.71
185 186 9.872721 TGTTATATTGTTCGTACCTTGATGTTA 57.127 29.630 0.00 0.00 0.00 2.41
187 188 9.872721 TTATATTGTTCGTACCTTGATGTTACA 57.127 29.630 0.00 0.00 0.00 2.41
188 189 8.958119 ATATTGTTCGTACCTTGATGTTACAT 57.042 30.769 0.00 0.00 0.00 2.29
189 190 7.681939 ATTGTTCGTACCTTGATGTTACATT 57.318 32.000 0.00 0.00 0.00 2.71
190 191 7.499321 TTGTTCGTACCTTGATGTTACATTT 57.501 32.000 0.00 0.00 0.00 2.32
191 192 7.124347 TGTTCGTACCTTGATGTTACATTTC 57.876 36.000 0.00 0.00 0.00 2.17
192 193 6.706716 TGTTCGTACCTTGATGTTACATTTCA 59.293 34.615 0.00 0.00 0.00 2.69
193 194 7.226918 TGTTCGTACCTTGATGTTACATTTCAA 59.773 33.333 0.00 0.20 0.00 2.69
194 195 7.915293 TCGTACCTTGATGTTACATTTCAAT 57.085 32.000 0.00 0.00 0.00 2.57
195 196 7.747888 TCGTACCTTGATGTTACATTTCAATG 58.252 34.615 0.00 1.32 42.10 2.82
196 197 7.604545 TCGTACCTTGATGTTACATTTCAATGA 59.395 33.333 6.53 0.00 39.67 2.57
197 198 8.233868 CGTACCTTGATGTTACATTTCAATGAA 58.766 33.333 6.53 0.00 39.67 2.57
198 199 9.906660 GTACCTTGATGTTACATTTCAATGAAA 57.093 29.630 11.10 11.10 39.67 2.69
210 211 8.055279 ACATTTCAATGAAATACGATCAAGGT 57.945 30.769 19.42 8.41 39.82 3.50
211 212 7.970061 ACATTTCAATGAAATACGATCAAGGTG 59.030 33.333 19.42 8.13 39.82 4.00
212 213 7.680442 TTTCAATGAAATACGATCAAGGTGA 57.320 32.000 4.03 0.00 0.00 4.02
213 214 7.864108 TTCAATGAAATACGATCAAGGTGAT 57.136 32.000 0.00 0.00 40.34 3.06
214 215 7.250445 TCAATGAAATACGATCAAGGTGATG 57.750 36.000 0.00 0.00 37.20 3.07
215 216 5.679734 ATGAAATACGATCAAGGTGATGC 57.320 39.130 0.00 0.00 37.20 3.91
216 217 3.876914 TGAAATACGATCAAGGTGATGCC 59.123 43.478 0.00 0.00 37.20 4.40
217 218 3.558931 AATACGATCAAGGTGATGCCA 57.441 42.857 0.00 0.00 37.20 4.92
218 219 2.309528 TACGATCAAGGTGATGCCAC 57.690 50.000 0.00 0.00 37.20 5.01
219 220 0.324614 ACGATCAAGGTGATGCCACA 59.675 50.000 0.00 0.00 44.93 4.17
220 221 0.729116 CGATCAAGGTGATGCCACAC 59.271 55.000 0.00 2.38 44.93 3.82
221 222 1.825090 GATCAAGGTGATGCCACACA 58.175 50.000 11.40 0.00 44.93 3.72
222 223 2.372264 GATCAAGGTGATGCCACACAT 58.628 47.619 11.40 2.78 44.93 3.21
223 224 1.536940 TCAAGGTGATGCCACACATG 58.463 50.000 11.40 9.61 44.93 3.21
224 225 1.073603 TCAAGGTGATGCCACACATGA 59.926 47.619 0.00 11.27 44.93 3.07
225 226 2.097036 CAAGGTGATGCCACACATGAT 58.903 47.619 0.00 0.00 44.93 2.45
226 227 1.758936 AGGTGATGCCACACATGATG 58.241 50.000 0.00 0.00 44.93 3.07
227 228 0.742505 GGTGATGCCACACATGATGG 59.257 55.000 14.26 14.26 44.93 3.51
232 233 4.419502 CCACACATGATGGCCACA 57.580 55.556 8.16 9.31 0.00 4.17
233 234 2.656049 CCACACATGATGGCCACAA 58.344 52.632 8.16 0.00 0.00 3.33
234 235 0.244450 CCACACATGATGGCCACAAC 59.756 55.000 8.16 3.08 0.00 3.32
235 236 0.960286 CACACATGATGGCCACAACA 59.040 50.000 8.16 9.85 33.71 3.33
236 237 1.340568 CACACATGATGGCCACAACAA 59.659 47.619 8.16 0.00 32.88 2.83
237 238 1.340889 ACACATGATGGCCACAACAAC 59.659 47.619 8.16 0.00 32.88 3.32
238 239 0.968405 ACATGATGGCCACAACAACC 59.032 50.000 8.16 0.00 32.88 3.77
239 240 0.967662 CATGATGGCCACAACAACCA 59.032 50.000 8.16 0.00 37.99 3.67
240 241 0.968405 ATGATGGCCACAACAACCAC 59.032 50.000 8.16 0.00 35.99 4.16
241 242 0.106268 TGATGGCCACAACAACCACT 60.106 50.000 8.16 0.00 35.99 4.00
242 243 1.143889 TGATGGCCACAACAACCACTA 59.856 47.619 8.16 0.00 35.99 2.74
243 244 2.224992 TGATGGCCACAACAACCACTAT 60.225 45.455 8.16 0.00 35.99 2.12
244 245 1.614996 TGGCCACAACAACCACTATG 58.385 50.000 0.00 0.00 0.00 2.23
245 246 0.887933 GGCCACAACAACCACTATGG 59.112 55.000 0.00 0.00 45.02 2.74
274 275 9.958180 TCTCATATTTTATTGTTGTCCTCTTCA 57.042 29.630 0.00 0.00 0.00 3.02
305 306 1.004679 CATGCCCTTGGTGGTTTGC 60.005 57.895 0.00 0.00 0.00 3.68
309 310 2.132996 CCCTTGGTGGTTTGCTGCA 61.133 57.895 0.00 0.00 0.00 4.41
318 319 2.832661 TTTGCTGCAACGTGCCCT 60.833 55.556 15.72 0.00 44.23 5.19
322 323 1.671054 GCTGCAACGTGCCCTTAGA 60.671 57.895 7.38 0.00 44.23 2.10
323 324 1.639298 GCTGCAACGTGCCCTTAGAG 61.639 60.000 7.38 0.00 44.23 2.43
324 325 1.003839 TGCAACGTGCCCTTAGAGG 60.004 57.895 7.38 0.00 44.23 3.69
360 361 8.354426 GTCGATAAGCTATACTCCTTTTCTCTT 58.646 37.037 0.00 0.00 0.00 2.85
361 362 9.570468 TCGATAAGCTATACTCCTTTTCTCTTA 57.430 33.333 0.00 0.00 0.00 2.10
362 363 9.615295 CGATAAGCTATACTCCTTTTCTCTTAC 57.385 37.037 0.00 0.00 0.00 2.34
371 372 7.736447 ACTCCTTTTCTCTTACTGTCATTTG 57.264 36.000 0.00 0.00 0.00 2.32
372 373 6.712547 ACTCCTTTTCTCTTACTGTCATTTGG 59.287 38.462 0.00 0.00 0.00 3.28
387 388 2.647683 TTTGGGGTTTGAAATTGGCC 57.352 45.000 0.00 0.00 0.00 5.36
390 391 1.419387 TGGGGTTTGAAATTGGCCTTG 59.581 47.619 3.32 0.00 0.00 3.61
401 402 1.036707 TTGGCCTTGTACAAAGCACC 58.963 50.000 26.17 16.84 29.63 5.01
403 404 1.256812 GGCCTTGTACAAAGCACCAT 58.743 50.000 26.17 0.00 29.63 3.55
411 412 0.251922 ACAAAGCACCATGCCCATCT 60.252 50.000 0.00 0.00 46.52 2.90
422 423 3.614092 CATGCCCATCTGTAAACTCAGT 58.386 45.455 0.00 0.00 36.85 3.41
423 424 3.788227 TGCCCATCTGTAAACTCAGTT 57.212 42.857 0.00 0.00 36.85 3.16
424 425 4.098914 TGCCCATCTGTAAACTCAGTTT 57.901 40.909 8.15 8.15 39.24 2.66
425 426 4.469657 TGCCCATCTGTAAACTCAGTTTT 58.530 39.130 8.41 0.00 37.01 2.43
426 427 5.626142 TGCCCATCTGTAAACTCAGTTTTA 58.374 37.500 8.41 0.00 37.01 1.52
459 460 7.439356 GTGGGGTATCCGTAAACTTAGTTATTC 59.561 40.741 0.00 0.00 38.76 1.75
461 462 7.418942 GGGGTATCCGTAAACTTAGTTATTCCA 60.419 40.741 0.00 0.00 0.00 3.53
462 463 7.439356 GGGTATCCGTAAACTTAGTTATTCCAC 59.561 40.741 0.00 0.00 0.00 4.02
475 476 6.655078 AGTTATTCCACAAGTTTGAAGCAT 57.345 33.333 0.00 0.00 0.00 3.79
478 479 4.734398 TTCCACAAGTTTGAAGCATGTT 57.266 36.364 0.00 0.00 0.00 2.71
501 502 7.011389 TGTTTCTGATCATCGATGTGATTTACC 59.989 37.037 24.09 9.42 38.88 2.85
502 503 5.222631 TCTGATCATCGATGTGATTTACCG 58.777 41.667 24.09 5.73 38.88 4.02
507 508 7.328493 TGATCATCGATGTGATTTACCGTATTC 59.672 37.037 24.09 0.00 38.88 1.75
518 519 7.328737 GTGATTTACCGTATTCTATCATTCGCT 59.671 37.037 0.00 0.00 0.00 4.93
519 520 7.328493 TGATTTACCGTATTCTATCATTCGCTG 59.672 37.037 0.00 0.00 0.00 5.18
563 570 4.935702 TCAATTCAAGACACTGCCAAAAG 58.064 39.130 0.00 0.00 0.00 2.27
572 579 3.367992 CACTGCCAAAAGTGTATGCAA 57.632 42.857 0.00 0.00 42.21 4.08
573 580 3.311106 CACTGCCAAAAGTGTATGCAAG 58.689 45.455 0.00 0.00 42.21 4.01
574 581 3.004629 CACTGCCAAAAGTGTATGCAAGA 59.995 43.478 0.00 0.00 42.21 3.02
575 582 3.004734 ACTGCCAAAAGTGTATGCAAGAC 59.995 43.478 0.00 0.00 0.00 3.01
576 583 2.954989 TGCCAAAAGTGTATGCAAGACA 59.045 40.909 0.00 0.00 0.00 3.41
623 633 2.268298 CCGACACCCTGTTCTAAATCG 58.732 52.381 0.00 0.00 0.00 3.34
629 639 5.127491 ACACCCTGTTCTAAATCGAAAACA 58.873 37.500 0.00 0.00 0.00 2.83
631 641 6.142817 CACCCTGTTCTAAATCGAAAACAAG 58.857 40.000 0.00 0.00 31.75 3.16
632 642 5.826208 ACCCTGTTCTAAATCGAAAACAAGT 59.174 36.000 0.00 0.00 31.75 3.16
646 656 7.715657 TCGAAAACAAGTACTACCTCTGTAAA 58.284 34.615 0.00 0.00 0.00 2.01
692 702 9.072375 GTATACTAGTTTACGGAGGGAGTATTT 57.928 37.037 0.00 0.00 32.43 1.40
700 710 7.850935 TTACGGAGGGAGTATTTCATAAGAT 57.149 36.000 0.00 0.00 0.00 2.40
702 712 5.839063 ACGGAGGGAGTATTTCATAAGATCA 59.161 40.000 0.00 0.00 0.00 2.92
729 739 5.248870 ACAATCAAAACCAGACTCACAAC 57.751 39.130 0.00 0.00 0.00 3.32
738 748 4.137543 ACCAGACTCACAACAAATCTTCC 58.862 43.478 0.00 0.00 0.00 3.46
739 749 4.141390 ACCAGACTCACAACAAATCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
740 750 4.823989 CCAGACTCACAACAAATCTTCCTT 59.176 41.667 0.00 0.00 0.00 3.36
741 751 5.300286 CCAGACTCACAACAAATCTTCCTTT 59.700 40.000 0.00 0.00 0.00 3.11
825 835 3.819564 AGTTCAAAAAGGTGGAAAGGC 57.180 42.857 0.00 0.00 0.00 4.35
830 840 1.515521 AAAAGGTGGAAAGGCGAGCG 61.516 55.000 0.00 0.00 0.00 5.03
831 841 2.391724 AAAGGTGGAAAGGCGAGCGA 62.392 55.000 0.00 0.00 0.00 4.93
875 885 1.217244 CAGCGGCCCGTACTAAACT 59.783 57.895 4.45 0.00 0.00 2.66
895 905 0.269173 ACCTCCCCTTATCCCCTCTG 59.731 60.000 0.00 0.00 0.00 3.35
923 933 4.408821 CCGCTGCTTGGCCCTGTA 62.409 66.667 0.00 0.00 0.00 2.74
939 949 1.153429 GTACCGCTCCACATCACCC 60.153 63.158 0.00 0.00 0.00 4.61
941 951 4.838152 CCGCTCCACATCACCCCG 62.838 72.222 0.00 0.00 0.00 5.73
942 952 3.770040 CGCTCCACATCACCCCGA 61.770 66.667 0.00 0.00 0.00 5.14
950 969 1.811266 CATCACCCCGAGCTTCGTG 60.811 63.158 0.00 0.00 38.40 4.35
951 970 1.982395 ATCACCCCGAGCTTCGTGA 60.982 57.895 8.09 8.09 38.40 4.35
953 972 3.692406 ACCCCGAGCTTCGTGACC 61.692 66.667 0.00 0.00 38.40 4.02
957 976 3.382832 CGAGCTTCGTGACCCCCT 61.383 66.667 0.00 0.00 34.72 4.79
959 978 3.003763 AGCTTCGTGACCCCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
961 980 3.400054 CTTCGTGACCCCCTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
1246 1277 2.164624 CAGGAGGAAGACGTACAGGAAG 59.835 54.545 0.00 0.00 0.00 3.46
1247 1278 2.041350 AGGAGGAAGACGTACAGGAAGA 59.959 50.000 0.00 0.00 0.00 2.87
1248 1279 2.824341 GGAGGAAGACGTACAGGAAGAA 59.176 50.000 0.00 0.00 0.00 2.52
1277 1308 2.110006 GCCGGAAGAGGATGAGCC 59.890 66.667 5.05 0.00 0.00 4.70
1278 1309 2.735772 GCCGGAAGAGGATGAGCCA 61.736 63.158 5.05 0.00 40.02 4.75
1279 1310 1.445095 CCGGAAGAGGATGAGCCAG 59.555 63.158 0.00 0.00 40.02 4.85
1356 1387 3.141488 GAGGCGAGCTCGGAAGGA 61.141 66.667 35.10 0.00 40.23 3.36
1362 1393 3.132481 GAGCTCGGAAGGAGGCGAG 62.132 68.421 0.00 0.00 43.36 5.03
1363 1394 4.214327 GCTCGGAAGGAGGCGAGG 62.214 72.222 0.00 0.00 43.36 4.63
1364 1395 2.440430 CTCGGAAGGAGGCGAGGA 60.440 66.667 0.00 0.00 39.22 3.71
1365 1396 2.440430 TCGGAAGGAGGCGAGGAG 60.440 66.667 0.00 0.00 0.00 3.69
1366 1397 3.532155 CGGAAGGAGGCGAGGAGG 61.532 72.222 0.00 0.00 0.00 4.30
1374 1405 2.760385 GGCGAGGAGGCTAGTGGT 60.760 66.667 0.00 0.00 42.90 4.16
1375 1406 2.496817 GCGAGGAGGCTAGTGGTG 59.503 66.667 0.00 0.00 0.00 4.17
1376 1407 2.052690 GCGAGGAGGCTAGTGGTGA 61.053 63.158 0.00 0.00 0.00 4.02
1501 1532 0.539901 CCCGGAGATGGTCGAGGTAT 60.540 60.000 0.73 0.00 0.00 2.73
1531 1562 2.727607 GCGCACGCTGTTTGATGAAATA 60.728 45.455 7.96 0.00 38.26 1.40
1533 1564 3.666638 CGCACGCTGTTTGATGAAATACA 60.667 43.478 0.00 0.00 0.00 2.29
1535 1566 4.858692 GCACGCTGTTTGATGAAATACATT 59.141 37.500 0.00 0.00 39.56 2.71
1539 1570 4.567959 GCTGTTTGATGAAATACATTGGCC 59.432 41.667 0.00 0.00 39.56 5.36
1550 1581 2.588877 ATTGGCCGATCGCTTCCG 60.589 61.111 10.32 0.00 37.74 4.30
1629 1728 2.357034 GGCTTCGCCTTCGTGACA 60.357 61.111 0.00 0.00 46.69 3.58
1647 1746 1.153745 AATGAGCACGCTCGAGGAC 60.154 57.895 15.58 0.00 45.48 3.85
1709 1808 0.392193 CTGCTCAGTCCATCCACCAC 60.392 60.000 0.00 0.00 0.00 4.16
1738 1837 4.039730 CGTACATCTTCCATGGATTCCTCT 59.960 45.833 17.06 0.00 0.00 3.69
1739 1838 4.703379 ACATCTTCCATGGATTCCTCTC 57.297 45.455 17.06 0.00 0.00 3.20
1740 1839 4.042884 ACATCTTCCATGGATTCCTCTCA 58.957 43.478 17.06 0.00 0.00 3.27
1741 1840 4.664064 ACATCTTCCATGGATTCCTCTCAT 59.336 41.667 17.06 0.00 0.00 2.90
1742 1841 4.701651 TCTTCCATGGATTCCTCTCATG 57.298 45.455 17.06 0.00 38.30 3.07
1744 1843 2.415624 TCCATGGATTCCTCTCATGCT 58.584 47.619 11.44 0.00 37.52 3.79
1745 1844 2.371179 TCCATGGATTCCTCTCATGCTC 59.629 50.000 11.44 0.00 37.52 4.26
2064 2163 4.250464 CGGTAATAAGAAACTGTGCCTGA 58.750 43.478 0.00 0.00 0.00 3.86
2103 2229 4.669206 TGAAAAGCTCTGAATTGCCAAA 57.331 36.364 0.00 0.00 0.00 3.28
2119 2245 3.837213 CCAAACTGGCAATGAGTAGTG 57.163 47.619 0.00 0.00 0.00 2.74
2120 2246 2.489329 CCAAACTGGCAATGAGTAGTGG 59.511 50.000 0.00 0.00 0.00 4.00
2124 2282 0.253044 TGGCAATGAGTAGTGGCCTC 59.747 55.000 3.32 0.00 45.56 4.70
2137 2295 0.252057 TGGCCTCACACTAGCACCTA 60.252 55.000 3.32 0.00 0.00 3.08
2144 2302 4.505039 CCTCACACTAGCACCTAAAAACCT 60.505 45.833 0.00 0.00 0.00 3.50
2147 2305 5.298276 TCACACTAGCACCTAAAAACCTTTG 59.702 40.000 0.00 0.00 0.00 2.77
2166 2324 4.439305 TTGGAATGCAGAATGTAGCAAC 57.561 40.909 0.00 0.00 44.88 4.17
2170 2328 1.438651 TGCAGAATGTAGCAACCGAC 58.561 50.000 0.00 0.00 37.90 4.79
2175 2333 3.804325 CAGAATGTAGCAACCGACATAGG 59.196 47.826 0.00 0.00 36.46 2.57
2176 2334 3.704566 AGAATGTAGCAACCGACATAGGA 59.295 43.478 0.00 0.00 36.46 2.94
2179 2337 2.165641 TGTAGCAACCGACATAGGACTG 59.834 50.000 0.00 0.00 34.73 3.51
2181 2339 1.899814 AGCAACCGACATAGGACTGAA 59.100 47.619 0.00 0.00 34.73 3.02
2182 2340 2.301870 AGCAACCGACATAGGACTGAAA 59.698 45.455 0.00 0.00 34.73 2.69
2205 2363 6.908870 AAAACTTTGCCAAGATGAAGTTTC 57.091 33.333 4.25 0.00 46.05 2.78
2206 2364 4.590850 ACTTTGCCAAGATGAAGTTTCC 57.409 40.909 4.25 0.00 33.72 3.13
2209 2367 4.589216 TTGCCAAGATGAAGTTTCCTTG 57.411 40.909 0.00 0.00 36.64 3.61
2210 2368 2.297033 TGCCAAGATGAAGTTTCCTTGC 59.703 45.455 0.00 0.00 35.83 4.01
2220 2378 7.719633 AGATGAAGTTTCCTTGCTTAACTAACA 59.280 33.333 0.00 0.00 32.17 2.41
2224 2382 6.303839 AGTTTCCTTGCTTAACTAACATGGA 58.696 36.000 0.00 0.00 36.25 3.41
2227 2385 7.391148 TTCCTTGCTTAACTAACATGGATTC 57.609 36.000 0.00 0.00 37.45 2.52
2228 2386 6.721318 TCCTTGCTTAACTAACATGGATTCT 58.279 36.000 0.00 0.00 33.94 2.40
2230 2388 5.818136 TGCTTAACTAACATGGATTCTGC 57.182 39.130 0.00 0.00 0.00 4.26
2249 2408 5.692814 TCTGCTTGAAATTCATTCTTCACG 58.307 37.500 0.00 0.00 38.92 4.35
2252 2411 3.469899 TGAAATTCATTCTTCACGGCG 57.530 42.857 4.80 4.80 38.92 6.46
2253 2412 2.161410 TGAAATTCATTCTTCACGGCGG 59.839 45.455 13.24 0.00 38.92 6.13
2256 2415 1.573829 TTCATTCTTCACGGCGGCAC 61.574 55.000 13.24 0.00 0.00 5.01
2257 2416 2.746277 ATTCTTCACGGCGGCACC 60.746 61.111 13.24 0.00 0.00 5.01
2260 2419 3.726517 CTTCACGGCGGCACCAAG 61.727 66.667 13.24 2.98 39.03 3.61
2263 2422 3.283684 CACGGCGGCACCAAGAAA 61.284 61.111 13.24 0.00 39.03 2.52
2269 2428 1.338655 GGCGGCACCAAGAAAAGTAAA 59.661 47.619 3.07 0.00 38.86 2.01
2270 2429 2.390938 GCGGCACCAAGAAAAGTAAAC 58.609 47.619 0.00 0.00 0.00 2.01
2279 2438 6.972901 CACCAAGAAAAGTAAACCAGAGTTTC 59.027 38.462 0.00 0.00 42.67 2.78
2282 2441 7.363443 CCAAGAAAAGTAAACCAGAGTTTCCAA 60.363 37.037 0.00 0.00 42.67 3.53
2435 2595 1.138859 GGGGTTTATGCAATGCTTCCC 59.861 52.381 6.82 7.27 0.00 3.97
2436 2596 2.110578 GGGTTTATGCAATGCTTCCCT 58.889 47.619 6.82 0.00 0.00 4.20
2588 2748 2.825264 GAGATGGAGCGGGGGAAG 59.175 66.667 0.00 0.00 0.00 3.46
2652 2812 6.558771 TGCGAGGGAAAATTGATATGTATG 57.441 37.500 0.00 0.00 0.00 2.39
2653 2813 5.048782 TGCGAGGGAAAATTGATATGTATGC 60.049 40.000 0.00 0.00 0.00 3.14
2654 2814 5.048782 GCGAGGGAAAATTGATATGTATGCA 60.049 40.000 0.00 0.00 0.00 3.96
2655 2815 6.349611 GCGAGGGAAAATTGATATGTATGCAT 60.350 38.462 3.79 3.79 39.03 3.96
2698 2858 3.934579 CTGAAAATTATTGGGGTTGCTGC 59.065 43.478 0.00 0.00 0.00 5.25
2699 2859 3.270027 GAAAATTATTGGGGTTGCTGCC 58.730 45.455 0.00 0.00 0.00 4.85
2700 2860 2.252535 AATTATTGGGGTTGCTGCCT 57.747 45.000 0.00 0.00 0.00 4.75
2701 2861 2.252535 ATTATTGGGGTTGCTGCCTT 57.747 45.000 0.00 0.00 0.00 4.35
2702 2862 1.265236 TTATTGGGGTTGCTGCCTTG 58.735 50.000 0.00 0.00 0.00 3.61
2703 2863 1.257055 TATTGGGGTTGCTGCCTTGC 61.257 55.000 0.00 0.00 0.00 4.01
2704 2864 3.640881 TATTGGGGTTGCTGCCTTGCT 62.641 52.381 0.00 0.00 0.00 3.91
2705 2865 3.376918 GGGGTTGCTGCCTTGCTC 61.377 66.667 0.00 0.00 0.00 4.26
2790 2952 7.224557 GCAACTTGGTTTATGTTTTTCTCACAT 59.775 33.333 0.00 0.00 38.45 3.21
2852 3015 8.147058 GTGTACATATTTGTCTGAGATGGATCT 58.853 37.037 0.00 0.00 37.27 2.75
2865 3028 6.586344 TGAGATGGATCTGTTACCATTCTTC 58.414 40.000 0.00 0.00 45.41 2.87
2903 3066 6.758254 TGTCAGATTCATGTGAACACTAAGA 58.242 36.000 6.51 0.00 36.80 2.10
2927 3090 5.890334 TGTTGTTTGGAGAATCAACTCAAC 58.110 37.500 0.00 12.95 40.34 3.18
2928 3091 5.417266 TGTTGTTTGGAGAATCAACTCAACA 59.583 36.000 15.95 15.95 42.30 3.33
2929 3092 6.096705 TGTTGTTTGGAGAATCAACTCAACAT 59.903 34.615 15.95 0.00 41.22 2.71
2931 3094 6.738114 TGTTTGGAGAATCAACTCAACATTC 58.262 36.000 0.00 0.00 38.51 2.67
2933 3096 6.808008 TTGGAGAATCAACTCAACATTCTC 57.192 37.500 11.00 11.00 46.44 2.87
3049 3215 3.071602 AGGCAAGAGTACAAGACACACAT 59.928 43.478 0.00 0.00 0.00 3.21
3057 3223 6.641314 AGAGTACAAGACACACATAAACTTCG 59.359 38.462 0.00 0.00 0.00 3.79
3066 3232 4.387862 CACACATAAACTTCGGAGTACCAC 59.612 45.833 0.00 0.00 34.21 4.16
3119 3289 5.762825 ATCATGACAGTGACAATTATGGC 57.237 39.130 0.00 0.00 34.00 4.40
3162 3332 4.581093 GCGGGGCCAGGGTAATCC 62.581 72.222 4.39 0.00 0.00 3.01
3164 3334 2.819284 CGGGGCCAGGGTAATCCTC 61.819 68.421 4.39 0.00 46.12 3.71
3165 3335 2.461739 GGGGCCAGGGTAATCCTCC 61.462 68.421 4.39 0.00 46.12 4.30
3169 3339 1.288037 GGCCAGGGTAATCCTCCTTTT 59.712 52.381 0.00 0.00 46.12 2.27
3170 3340 2.656002 GCCAGGGTAATCCTCCTTTTC 58.344 52.381 0.00 0.00 46.12 2.29
3171 3341 2.025321 GCCAGGGTAATCCTCCTTTTCA 60.025 50.000 0.00 0.00 46.12 2.69
3172 3342 3.563479 GCCAGGGTAATCCTCCTTTTCAA 60.563 47.826 0.00 0.00 46.12 2.69
3173 3343 4.672899 CCAGGGTAATCCTCCTTTTCAAA 58.327 43.478 0.00 0.00 46.12 2.69
3174 3344 5.083821 CCAGGGTAATCCTCCTTTTCAAAA 58.916 41.667 0.00 0.00 46.12 2.44
3262 3432 3.408634 TGGAGGCTAACAAAGTAGCAAC 58.591 45.455 6.55 0.32 46.98 4.17
3290 3460 7.915293 TTCTTTTCATTGGCGTATTAAGAGA 57.085 32.000 0.00 0.00 0.00 3.10
3300 3470 4.885325 GGCGTATTAAGAGAAATTTGGGGA 59.115 41.667 0.00 0.00 0.00 4.81
3305 3475 9.869757 CGTATTAAGAGAAATTTGGGGAAAAAT 57.130 29.630 0.00 0.00 0.00 1.82
3316 3486 7.797121 ATTTGGGGAAAAATATGACTTCACT 57.203 32.000 0.00 0.00 0.00 3.41
3373 3544 8.600449 GAGATTAGCTCATAGTTGCTTTATGT 57.400 34.615 0.00 0.00 43.38 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.117284 ACCAAAATCCACTACACCTGGTT 60.117 43.478 0.00 0.00 31.97 3.67
1 2 2.445525 ACCAAAATCCACTACACCTGGT 59.554 45.455 0.00 0.00 0.00 4.00
2 3 3.154827 ACCAAAATCCACTACACCTGG 57.845 47.619 0.00 0.00 0.00 4.45
3 4 3.506067 GGAACCAAAATCCACTACACCTG 59.494 47.826 0.00 0.00 36.92 4.00
4 5 3.139397 TGGAACCAAAATCCACTACACCT 59.861 43.478 0.00 0.00 41.98 4.00
5 6 3.492337 TGGAACCAAAATCCACTACACC 58.508 45.455 0.00 0.00 41.98 4.16
6 7 5.476945 AGATTGGAACCAAAATCCACTACAC 59.523 40.000 10.36 0.00 46.37 2.90
7 8 5.640147 AGATTGGAACCAAAATCCACTACA 58.360 37.500 10.36 0.00 46.37 2.74
8 9 7.110155 TCTAGATTGGAACCAAAATCCACTAC 58.890 38.462 10.36 0.00 46.37 2.73
9 10 7.037586 ACTCTAGATTGGAACCAAAATCCACTA 60.038 37.037 10.36 6.95 46.37 2.74
10 11 6.139679 TCTAGATTGGAACCAAAATCCACT 57.860 37.500 10.36 6.30 46.37 4.00
11 12 5.946377 ACTCTAGATTGGAACCAAAATCCAC 59.054 40.000 10.36 0.00 46.37 4.02
12 13 5.945784 CACTCTAGATTGGAACCAAAATCCA 59.054 40.000 10.36 0.00 45.09 3.41
13 14 5.946377 ACACTCTAGATTGGAACCAAAATCC 59.054 40.000 13.99 1.46 39.55 3.01
14 15 7.454260 AACACTCTAGATTGGAACCAAAATC 57.546 36.000 13.99 4.92 39.55 2.17
15 16 7.287696 ACAAACACTCTAGATTGGAACCAAAAT 59.712 33.333 13.99 5.01 39.55 1.82
16 17 6.605594 ACAAACACTCTAGATTGGAACCAAAA 59.394 34.615 13.99 0.00 39.55 2.44
17 18 6.126409 ACAAACACTCTAGATTGGAACCAAA 58.874 36.000 13.99 0.00 39.55 3.28
18 19 5.690865 ACAAACACTCTAGATTGGAACCAA 58.309 37.500 13.99 8.75 40.47 3.67
19 20 5.304686 ACAAACACTCTAGATTGGAACCA 57.695 39.130 13.99 0.00 0.00 3.67
20 21 5.763204 TCAACAAACACTCTAGATTGGAACC 59.237 40.000 13.99 0.00 0.00 3.62
21 22 6.483640 AGTCAACAAACACTCTAGATTGGAAC 59.516 38.462 13.99 6.31 0.00 3.62
22 23 6.591935 AGTCAACAAACACTCTAGATTGGAA 58.408 36.000 13.99 0.00 0.00 3.53
23 24 6.174720 AGTCAACAAACACTCTAGATTGGA 57.825 37.500 13.99 0.00 0.00 3.53
24 25 6.483307 TCAAGTCAACAAACACTCTAGATTGG 59.517 38.462 13.99 0.00 0.00 3.16
25 26 7.225538 ACTCAAGTCAACAAACACTCTAGATTG 59.774 37.037 8.46 8.46 0.00 2.67
26 27 7.275920 ACTCAAGTCAACAAACACTCTAGATT 58.724 34.615 0.00 0.00 0.00 2.40
27 28 6.821388 ACTCAAGTCAACAAACACTCTAGAT 58.179 36.000 0.00 0.00 0.00 1.98
28 29 6.222038 ACTCAAGTCAACAAACACTCTAGA 57.778 37.500 0.00 0.00 0.00 2.43
29 30 6.758886 AGAACTCAAGTCAACAAACACTCTAG 59.241 38.462 0.00 0.00 0.00 2.43
30 31 6.640518 AGAACTCAAGTCAACAAACACTCTA 58.359 36.000 0.00 0.00 0.00 2.43
31 32 5.491982 AGAACTCAAGTCAACAAACACTCT 58.508 37.500 0.00 0.00 0.00 3.24
32 33 5.803020 AGAACTCAAGTCAACAAACACTC 57.197 39.130 0.00 0.00 0.00 3.51
33 34 7.275920 AGATAGAACTCAAGTCAACAAACACT 58.724 34.615 0.00 0.00 0.00 3.55
34 35 7.224753 TGAGATAGAACTCAAGTCAACAAACAC 59.775 37.037 0.00 0.00 42.79 3.32
35 36 7.272244 TGAGATAGAACTCAAGTCAACAAACA 58.728 34.615 0.00 0.00 42.79 2.83
36 37 7.715265 TGAGATAGAACTCAAGTCAACAAAC 57.285 36.000 0.00 0.00 42.79 2.93
47 48 7.187824 ACATAGCCTTTTGAGATAGAACTCA 57.812 36.000 0.00 0.00 43.83 3.41
48 49 9.418045 GATACATAGCCTTTTGAGATAGAACTC 57.582 37.037 0.00 0.00 37.42 3.01
49 50 8.928448 TGATACATAGCCTTTTGAGATAGAACT 58.072 33.333 0.00 0.00 0.00 3.01
50 51 9.717942 ATGATACATAGCCTTTTGAGATAGAAC 57.282 33.333 0.00 0.00 0.00 3.01
52 53 9.716531 CAATGATACATAGCCTTTTGAGATAGA 57.283 33.333 0.00 0.00 0.00 1.98
53 54 9.716531 TCAATGATACATAGCCTTTTGAGATAG 57.283 33.333 0.00 0.00 0.00 2.08
54 55 9.716531 CTCAATGATACATAGCCTTTTGAGATA 57.283 33.333 0.00 0.00 0.00 1.98
55 56 8.216423 ACTCAATGATACATAGCCTTTTGAGAT 58.784 33.333 14.27 0.00 0.00 2.75
56 57 7.568349 ACTCAATGATACATAGCCTTTTGAGA 58.432 34.615 14.27 0.00 0.00 3.27
57 58 7.798596 ACTCAATGATACATAGCCTTTTGAG 57.201 36.000 7.56 7.56 0.00 3.02
58 59 8.579850 AAACTCAATGATACATAGCCTTTTGA 57.420 30.769 0.00 0.00 0.00 2.69
88 89 9.523168 GGAGATAACTAGTGATACCTACTCAAT 57.477 37.037 0.00 0.00 0.00 2.57
89 90 7.943447 GGGAGATAACTAGTGATACCTACTCAA 59.057 40.741 12.83 0.00 0.00 3.02
90 91 7.073343 TGGGAGATAACTAGTGATACCTACTCA 59.927 40.741 12.83 3.66 0.00 3.41
91 92 7.460071 TGGGAGATAACTAGTGATACCTACTC 58.540 42.308 12.83 6.61 0.00 2.59
92 93 7.403837 TGGGAGATAACTAGTGATACCTACT 57.596 40.000 12.83 0.00 0.00 2.57
93 94 7.724951 AGTTGGGAGATAACTAGTGATACCTAC 59.275 40.741 12.83 12.13 36.66 3.18
94 95 7.823635 AGTTGGGAGATAACTAGTGATACCTA 58.176 38.462 12.83 6.81 36.66 3.08
95 96 6.684538 AGTTGGGAGATAACTAGTGATACCT 58.315 40.000 12.83 0.00 36.66 3.08
96 97 6.980416 AGTTGGGAGATAACTAGTGATACC 57.020 41.667 0.00 1.77 36.66 2.73
97 98 7.707035 CACAAGTTGGGAGATAACTAGTGATAC 59.293 40.741 7.96 0.00 37.39 2.24
98 99 7.618117 TCACAAGTTGGGAGATAACTAGTGATA 59.382 37.037 2.93 0.00 37.39 2.15
99 100 6.440647 TCACAAGTTGGGAGATAACTAGTGAT 59.559 38.462 2.93 0.00 37.39 3.06
100 101 5.778241 TCACAAGTTGGGAGATAACTAGTGA 59.222 40.000 2.93 0.00 37.39 3.41
101 102 6.037786 TCACAAGTTGGGAGATAACTAGTG 57.962 41.667 2.93 0.00 37.39 2.74
102 103 6.681729 TTCACAAGTTGGGAGATAACTAGT 57.318 37.500 8.06 0.00 37.39 2.57
103 104 9.482627 GATATTCACAAGTTGGGAGATAACTAG 57.517 37.037 8.06 0.00 37.39 2.57
104 105 8.141909 CGATATTCACAAGTTGGGAGATAACTA 58.858 37.037 8.06 0.00 37.39 2.24
105 106 6.986817 CGATATTCACAAGTTGGGAGATAACT 59.013 38.462 8.06 0.00 39.92 2.24
106 107 6.202954 CCGATATTCACAAGTTGGGAGATAAC 59.797 42.308 8.06 7.46 27.75 1.89
107 108 6.288294 CCGATATTCACAAGTTGGGAGATAA 58.712 40.000 8.06 0.00 27.75 1.75
108 109 5.221641 CCCGATATTCACAAGTTGGGAGATA 60.222 44.000 8.06 9.57 37.61 1.98
109 110 4.444876 CCCGATATTCACAAGTTGGGAGAT 60.445 45.833 8.06 6.13 37.61 2.75
110 111 3.118408 CCCGATATTCACAAGTTGGGAGA 60.118 47.826 8.06 0.99 37.61 3.71
111 112 3.118408 TCCCGATATTCACAAGTTGGGAG 60.118 47.826 8.06 0.00 39.44 4.30
112 113 2.841266 TCCCGATATTCACAAGTTGGGA 59.159 45.455 2.93 2.93 41.98 4.37
113 114 2.943033 GTCCCGATATTCACAAGTTGGG 59.057 50.000 7.96 2.56 36.72 4.12
114 115 3.623060 CAGTCCCGATATTCACAAGTTGG 59.377 47.826 7.96 0.00 0.00 3.77
115 116 3.063997 GCAGTCCCGATATTCACAAGTTG 59.936 47.826 0.00 0.00 0.00 3.16
116 117 3.270877 GCAGTCCCGATATTCACAAGTT 58.729 45.455 0.00 0.00 0.00 2.66
117 118 2.236146 TGCAGTCCCGATATTCACAAGT 59.764 45.455 0.00 0.00 0.00 3.16
118 119 2.905075 TGCAGTCCCGATATTCACAAG 58.095 47.619 0.00 0.00 0.00 3.16
119 120 3.205338 CATGCAGTCCCGATATTCACAA 58.795 45.455 0.00 0.00 0.00 3.33
120 121 2.837498 CATGCAGTCCCGATATTCACA 58.163 47.619 0.00 0.00 0.00 3.58
121 122 1.532868 GCATGCAGTCCCGATATTCAC 59.467 52.381 14.21 0.00 0.00 3.18
122 123 1.543208 GGCATGCAGTCCCGATATTCA 60.543 52.381 21.36 0.00 0.00 2.57
123 124 1.160137 GGCATGCAGTCCCGATATTC 58.840 55.000 21.36 0.00 0.00 1.75
124 125 0.603707 CGGCATGCAGTCCCGATATT 60.604 55.000 21.36 0.00 44.55 1.28
125 126 1.004560 CGGCATGCAGTCCCGATAT 60.005 57.895 21.36 0.00 44.55 1.63
126 127 2.421314 CGGCATGCAGTCCCGATA 59.579 61.111 21.36 0.00 44.55 2.92
136 137 0.946528 TACAATCTGATGCGGCATGC 59.053 50.000 21.98 9.90 46.70 4.06
137 138 1.941975 TGTACAATCTGATGCGGCATG 59.058 47.619 21.98 8.91 0.00 4.06
138 139 2.216046 CTGTACAATCTGATGCGGCAT 58.784 47.619 16.65 16.65 0.00 4.40
139 140 1.066215 ACTGTACAATCTGATGCGGCA 60.066 47.619 4.58 4.58 0.00 5.69
140 141 1.328680 CACTGTACAATCTGATGCGGC 59.671 52.381 0.00 0.00 0.00 6.53
141 142 2.621338 ACACTGTACAATCTGATGCGG 58.379 47.619 0.00 0.00 0.00 5.69
142 143 5.973651 ATAACACTGTACAATCTGATGCG 57.026 39.130 0.00 0.00 0.00 4.73
143 144 8.830580 ACAATATAACACTGTACAATCTGATGC 58.169 33.333 0.00 0.00 0.00 3.91
146 147 9.083080 CGAACAATATAACACTGTACAATCTGA 57.917 33.333 0.00 0.00 0.00 3.27
147 148 8.869897 ACGAACAATATAACACTGTACAATCTG 58.130 33.333 0.00 0.00 0.00 2.90
148 149 8.997621 ACGAACAATATAACACTGTACAATCT 57.002 30.769 0.00 0.00 0.00 2.40
150 151 9.090692 GGTACGAACAATATAACACTGTACAAT 57.909 33.333 0.00 0.00 33.23 2.71
151 152 8.306038 AGGTACGAACAATATAACACTGTACAA 58.694 33.333 0.00 0.00 33.23 2.41
152 153 7.829725 AGGTACGAACAATATAACACTGTACA 58.170 34.615 0.00 0.00 33.23 2.90
153 154 8.589629 CAAGGTACGAACAATATAACACTGTAC 58.410 37.037 0.00 0.00 0.00 2.90
154 155 8.522003 TCAAGGTACGAACAATATAACACTGTA 58.478 33.333 0.00 0.00 0.00 2.74
155 156 7.380536 TCAAGGTACGAACAATATAACACTGT 58.619 34.615 0.00 0.00 0.00 3.55
156 157 7.821595 TCAAGGTACGAACAATATAACACTG 57.178 36.000 0.00 0.00 0.00 3.66
157 158 8.038944 ACATCAAGGTACGAACAATATAACACT 58.961 33.333 0.00 0.00 0.00 3.55
158 159 8.193250 ACATCAAGGTACGAACAATATAACAC 57.807 34.615 0.00 0.00 0.00 3.32
159 160 8.780846 AACATCAAGGTACGAACAATATAACA 57.219 30.769 0.00 0.00 0.00 2.41
161 162 9.872721 TGTAACATCAAGGTACGAACAATATAA 57.127 29.630 0.00 0.00 43.60 0.98
163 164 8.958119 ATGTAACATCAAGGTACGAACAATAT 57.042 30.769 0.00 0.00 43.60 1.28
164 165 8.780846 AATGTAACATCAAGGTACGAACAATA 57.219 30.769 0.00 0.00 43.60 1.90
165 166 7.681939 AATGTAACATCAAGGTACGAACAAT 57.318 32.000 0.00 0.00 43.60 2.71
166 167 7.226918 TGAAATGTAACATCAAGGTACGAACAA 59.773 33.333 0.00 0.00 43.60 2.83
167 168 6.706716 TGAAATGTAACATCAAGGTACGAACA 59.293 34.615 0.00 0.00 43.60 3.18
168 169 7.124347 TGAAATGTAACATCAAGGTACGAAC 57.876 36.000 0.00 0.00 43.60 3.95
169 170 7.731882 TTGAAATGTAACATCAAGGTACGAA 57.268 32.000 0.00 0.00 43.60 3.85
170 171 7.604545 TCATTGAAATGTAACATCAAGGTACGA 59.395 33.333 3.10 0.00 43.60 3.43
171 172 7.747888 TCATTGAAATGTAACATCAAGGTACG 58.252 34.615 3.10 0.00 43.60 3.67
172 173 9.906660 TTTCATTGAAATGTAACATCAAGGTAC 57.093 29.630 7.74 0.00 40.96 3.34
184 185 9.173021 ACCTTGATCGTATTTCATTGAAATGTA 57.827 29.630 27.24 16.01 41.55 2.29
185 186 7.970061 CACCTTGATCGTATTTCATTGAAATGT 59.030 33.333 27.24 14.40 41.55 2.71
186 187 8.183536 TCACCTTGATCGTATTTCATTGAAATG 58.816 33.333 27.24 15.73 41.55 2.32
187 188 8.279970 TCACCTTGATCGTATTTCATTGAAAT 57.720 30.769 23.96 23.96 43.49 2.17
188 189 7.680442 TCACCTTGATCGTATTTCATTGAAA 57.320 32.000 13.88 13.88 35.94 2.69
189 190 7.679400 GCATCACCTTGATCGTATTTCATTGAA 60.679 37.037 0.00 0.00 34.28 2.69
190 191 6.238456 GCATCACCTTGATCGTATTTCATTGA 60.238 38.462 0.00 0.00 34.28 2.57
191 192 5.911280 GCATCACCTTGATCGTATTTCATTG 59.089 40.000 0.00 0.00 34.28 2.82
192 193 5.009010 GGCATCACCTTGATCGTATTTCATT 59.991 40.000 0.00 0.00 34.28 2.57
193 194 4.516698 GGCATCACCTTGATCGTATTTCAT 59.483 41.667 0.00 0.00 34.28 2.57
194 195 3.876914 GGCATCACCTTGATCGTATTTCA 59.123 43.478 0.00 0.00 34.28 2.69
195 196 3.876914 TGGCATCACCTTGATCGTATTTC 59.123 43.478 0.00 0.00 34.28 2.17
196 197 3.627577 GTGGCATCACCTTGATCGTATTT 59.372 43.478 0.00 0.00 34.28 1.40
197 198 3.206150 GTGGCATCACCTTGATCGTATT 58.794 45.455 0.00 0.00 34.28 1.89
198 199 2.170397 TGTGGCATCACCTTGATCGTAT 59.830 45.455 0.00 0.00 42.98 3.06
199 200 1.552792 TGTGGCATCACCTTGATCGTA 59.447 47.619 0.00 0.00 42.98 3.43
200 201 0.324614 TGTGGCATCACCTTGATCGT 59.675 50.000 0.00 0.00 42.98 3.73
201 202 0.729116 GTGTGGCATCACCTTGATCG 59.271 55.000 8.44 0.00 42.98 3.69
202 203 1.825090 TGTGTGGCATCACCTTGATC 58.175 50.000 14.63 0.00 42.98 2.92
203 204 2.097036 CATGTGTGGCATCACCTTGAT 58.903 47.619 14.63 2.79 42.98 2.57
204 205 1.073603 TCATGTGTGGCATCACCTTGA 59.926 47.619 14.63 14.02 42.98 3.02
205 206 1.536940 TCATGTGTGGCATCACCTTG 58.463 50.000 14.63 12.53 42.98 3.61
206 207 2.097036 CATCATGTGTGGCATCACCTT 58.903 47.619 14.63 3.52 42.98 3.50
207 208 1.683938 CCATCATGTGTGGCATCACCT 60.684 52.381 14.63 5.36 42.98 4.00
208 209 0.742505 CCATCATGTGTGGCATCACC 59.257 55.000 14.63 0.00 42.98 4.02
215 216 0.244450 GTTGTGGCCATCATGTGTGG 59.756 55.000 9.72 13.39 39.80 4.17
216 217 0.960286 TGTTGTGGCCATCATGTGTG 59.040 50.000 9.72 0.00 0.00 3.82
217 218 1.340889 GTTGTTGTGGCCATCATGTGT 59.659 47.619 9.72 0.00 0.00 3.72
218 219 1.337074 GGTTGTTGTGGCCATCATGTG 60.337 52.381 9.72 0.00 0.00 3.21
219 220 0.968405 GGTTGTTGTGGCCATCATGT 59.032 50.000 9.72 0.00 0.00 3.21
220 221 0.967662 TGGTTGTTGTGGCCATCATG 59.032 50.000 9.72 0.00 0.00 3.07
221 222 0.968405 GTGGTTGTTGTGGCCATCAT 59.032 50.000 9.72 0.00 34.52 2.45
222 223 0.106268 AGTGGTTGTTGTGGCCATCA 60.106 50.000 9.72 6.28 34.52 3.07
223 224 1.904287 TAGTGGTTGTTGTGGCCATC 58.096 50.000 9.72 3.12 34.52 3.51
224 225 2.170166 CATAGTGGTTGTTGTGGCCAT 58.830 47.619 9.72 0.00 34.52 4.40
225 226 1.614996 CATAGTGGTTGTTGTGGCCA 58.385 50.000 0.00 0.00 0.00 5.36
226 227 0.887933 CCATAGTGGTTGTTGTGGCC 59.112 55.000 0.00 0.00 31.35 5.36
248 249 9.958180 TGAAGAGGACAACAATAAAATATGAGA 57.042 29.630 0.00 0.00 0.00 3.27
255 256 9.403583 ACTTACTTGAAGAGGACAACAATAAAA 57.596 29.630 0.00 0.00 38.65 1.52
256 257 8.974060 ACTTACTTGAAGAGGACAACAATAAA 57.026 30.769 0.00 0.00 38.65 1.40
257 258 8.974060 AACTTACTTGAAGAGGACAACAATAA 57.026 30.769 0.00 0.00 38.65 1.40
258 259 8.974060 AAACTTACTTGAAGAGGACAACAATA 57.026 30.769 0.00 0.00 38.65 1.90
259 260 7.556275 TGAAACTTACTTGAAGAGGACAACAAT 59.444 33.333 0.00 0.00 38.65 2.71
260 261 6.882140 TGAAACTTACTTGAAGAGGACAACAA 59.118 34.615 0.00 0.00 38.65 2.83
261 262 6.411376 TGAAACTTACTTGAAGAGGACAACA 58.589 36.000 0.00 0.00 38.65 3.33
262 263 6.920569 TGAAACTTACTTGAAGAGGACAAC 57.079 37.500 0.00 0.00 38.65 3.32
263 264 7.279615 TGATGAAACTTACTTGAAGAGGACAA 58.720 34.615 0.00 0.00 38.65 3.18
264 265 6.826668 TGATGAAACTTACTTGAAGAGGACA 58.173 36.000 0.00 0.00 38.65 4.02
265 266 7.625185 GCATGATGAAACTTACTTGAAGAGGAC 60.625 40.741 0.00 0.00 38.65 3.85
266 267 6.372659 GCATGATGAAACTTACTTGAAGAGGA 59.627 38.462 0.00 0.00 38.65 3.71
267 268 6.404074 GGCATGATGAAACTTACTTGAAGAGG 60.404 42.308 0.00 0.00 38.65 3.69
268 269 6.404074 GGGCATGATGAAACTTACTTGAAGAG 60.404 42.308 0.00 0.00 38.65 2.85
269 270 5.415701 GGGCATGATGAAACTTACTTGAAGA 59.584 40.000 0.00 0.00 38.65 2.87
270 271 5.416952 AGGGCATGATGAAACTTACTTGAAG 59.583 40.000 0.00 0.00 41.37 3.02
271 272 5.324409 AGGGCATGATGAAACTTACTTGAA 58.676 37.500 0.00 0.00 0.00 2.69
272 273 4.922206 AGGGCATGATGAAACTTACTTGA 58.078 39.130 0.00 0.00 0.00 3.02
273 274 5.404946 CAAGGGCATGATGAAACTTACTTG 58.595 41.667 0.00 0.00 0.00 3.16
274 275 4.463891 CCAAGGGCATGATGAAACTTACTT 59.536 41.667 0.00 0.00 0.00 2.24
275 276 4.019174 CCAAGGGCATGATGAAACTTACT 58.981 43.478 0.00 0.00 0.00 2.24
276 277 3.763897 ACCAAGGGCATGATGAAACTTAC 59.236 43.478 0.00 0.00 0.00 2.34
341 342 7.616150 TGACAGTAAGAGAAAAGGAGTATAGCT 59.384 37.037 0.00 0.00 0.00 3.32
350 351 5.183904 CCCCAAATGACAGTAAGAGAAAAGG 59.816 44.000 0.00 0.00 0.00 3.11
360 361 6.463614 CCAATTTCAAACCCCAAATGACAGTA 60.464 38.462 0.00 0.00 0.00 2.74
361 362 5.367302 CAATTTCAAACCCCAAATGACAGT 58.633 37.500 0.00 0.00 0.00 3.55
362 363 4.756135 CCAATTTCAAACCCCAAATGACAG 59.244 41.667 0.00 0.00 0.00 3.51
370 371 1.419387 CAAGGCCAATTTCAAACCCCA 59.581 47.619 5.01 0.00 0.00 4.96
371 372 1.419762 ACAAGGCCAATTTCAAACCCC 59.580 47.619 5.01 0.00 0.00 4.95
372 373 2.928801 ACAAGGCCAATTTCAAACCC 57.071 45.000 5.01 0.00 0.00 4.11
387 388 1.067635 GGGCATGGTGCTTTGTACAAG 60.068 52.381 8.56 4.72 44.28 3.16
390 391 1.134946 GATGGGCATGGTGCTTTGTAC 59.865 52.381 1.64 0.00 44.28 2.90
401 402 3.614092 ACTGAGTTTACAGATGGGCATG 58.386 45.455 0.00 0.00 40.63 4.06
403 404 3.788227 AACTGAGTTTACAGATGGGCA 57.212 42.857 0.00 0.00 40.63 5.36
434 435 7.418942 GGAATAACTAAGTTTACGGATACCCCA 60.419 40.741 0.00 0.00 34.14 4.96
439 440 9.590451 CTTGTGGAATAACTAAGTTTACGGATA 57.410 33.333 0.00 0.00 0.00 2.59
459 460 4.505191 CAGAAACATGCTTCAAACTTGTGG 59.495 41.667 11.27 0.00 0.00 4.17
461 462 5.581126 TCAGAAACATGCTTCAAACTTGT 57.419 34.783 11.27 0.00 0.00 3.16
462 463 6.210796 TGATCAGAAACATGCTTCAAACTTG 58.789 36.000 11.27 0.89 0.00 3.16
475 476 6.990341 AAATCACATCGATGATCAGAAACA 57.010 33.333 31.33 4.71 38.40 2.83
478 479 5.691754 CGGTAAATCACATCGATGATCAGAA 59.308 40.000 31.33 9.87 38.40 3.02
501 502 5.694816 AGACTCAGCGAATGATAGAATACG 58.305 41.667 0.00 0.00 37.28 3.06
502 503 7.585867 TGTAGACTCAGCGAATGATAGAATAC 58.414 38.462 0.00 0.00 37.28 1.89
507 508 7.756558 TGATATGTAGACTCAGCGAATGATAG 58.243 38.462 0.00 0.00 37.28 2.08
544 551 4.311816 CACTTTTGGCAGTGTCTTGAAT 57.688 40.909 0.00 0.00 39.59 2.57
554 561 3.004629 TGTCTTGCATACACTTTTGGCAG 59.995 43.478 0.00 0.00 35.68 4.85
563 570 3.253188 ACCAACATGTGTCTTGCATACAC 59.747 43.478 20.42 20.42 45.96 2.90
565 572 3.253188 ACACCAACATGTGTCTTGCATAC 59.747 43.478 0.00 0.00 46.15 2.39
595 605 5.431179 AGAACAGGGTGTCGGTTTATATT 57.569 39.130 0.00 0.00 34.04 1.28
602 612 2.353406 CGATTTAGAACAGGGTGTCGGT 60.353 50.000 0.00 0.00 0.00 4.69
623 633 8.883954 AGTTTACAGAGGTAGTACTTGTTTTC 57.116 34.615 0.00 0.00 0.00 2.29
654 664 9.638300 CGTAAACTAGTATACGACGTTTTAGAT 57.362 33.333 5.50 0.00 45.77 1.98
655 665 8.114290 CCGTAAACTAGTATACGACGTTTTAGA 58.886 37.037 5.50 0.00 45.77 2.10
656 666 8.114290 TCCGTAAACTAGTATACGACGTTTTAG 58.886 37.037 5.50 6.07 45.77 1.85
657 667 7.966111 TCCGTAAACTAGTATACGACGTTTTA 58.034 34.615 5.50 0.00 45.77 1.52
658 668 6.837992 TCCGTAAACTAGTATACGACGTTTT 58.162 36.000 5.50 1.03 45.77 2.43
659 669 6.417191 TCCGTAAACTAGTATACGACGTTT 57.583 37.500 5.50 17.78 45.77 3.60
663 673 5.057149 TCCCTCCGTAAACTAGTATACGAC 58.943 45.833 0.00 0.00 45.77 4.34
666 676 8.628630 AATACTCCCTCCGTAAACTAGTATAC 57.371 38.462 0.00 0.00 30.59 1.47
671 681 6.461110 TGAAATACTCCCTCCGTAAACTAG 57.539 41.667 0.00 0.00 0.00 2.57
677 687 7.008332 TGATCTTATGAAATACTCCCTCCGTA 58.992 38.462 0.00 0.00 0.00 4.02
700 710 7.173218 GTGAGTCTGGTTTTGATTGTAGATTGA 59.827 37.037 0.00 0.00 0.00 2.57
702 712 6.998074 TGTGAGTCTGGTTTTGATTGTAGATT 59.002 34.615 0.00 0.00 0.00 2.40
711 721 5.652014 AGATTTGTTGTGAGTCTGGTTTTGA 59.348 36.000 0.00 0.00 0.00 2.69
756 766 5.652994 AAACTACAACTTGCAAGTTCCAA 57.347 34.783 35.97 23.82 45.65 3.53
830 840 2.434359 CCCTTCGGCGTGGTTCTC 60.434 66.667 6.85 0.00 0.00 2.87
875 885 1.508185 CAGAGGGGATAAGGGGAGGTA 59.492 57.143 0.00 0.00 0.00 3.08
907 917 3.127533 GTACAGGGCCAAGCAGCG 61.128 66.667 6.18 0.00 0.00 5.18
923 933 3.717294 GGGGTGATGTGGAGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
939 949 4.452733 GGGGGTCACGAAGCTCGG 62.453 72.222 9.75 0.00 45.59 4.63
941 951 2.579738 GAGGGGGTCACGAAGCTC 59.420 66.667 0.00 0.00 0.00 4.09
942 952 3.003763 GGAGGGGGTCACGAAGCT 61.004 66.667 0.00 0.00 0.00 3.74
1262 1293 1.227497 GCTGGCTCATCCTCTTCCG 60.227 63.158 0.00 0.00 35.26 4.30
1277 1308 4.463879 CGACCTCCCCTGCTGCTG 62.464 72.222 0.00 0.00 0.00 4.41
1278 1309 4.704103 TCGACCTCCCCTGCTGCT 62.704 66.667 0.00 0.00 0.00 4.24
1279 1310 4.154347 CTCGACCTCCCCTGCTGC 62.154 72.222 0.00 0.00 0.00 5.25
1353 1384 2.197324 CTAGCCTCCTCGCCTCCT 59.803 66.667 0.00 0.00 0.00 3.69
1356 1387 2.443016 CCACTAGCCTCCTCGCCT 60.443 66.667 0.00 0.00 0.00 5.52
1362 1393 1.139853 CTTCCATCACCACTAGCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
1363 1394 1.474143 GCTTCCATCACCACTAGCCTC 60.474 57.143 0.00 0.00 0.00 4.70
1364 1395 0.543749 GCTTCCATCACCACTAGCCT 59.456 55.000 0.00 0.00 0.00 4.58
1365 1396 0.253044 TGCTTCCATCACCACTAGCC 59.747 55.000 0.00 0.00 0.00 3.93
1366 1397 1.065854 AGTGCTTCCATCACCACTAGC 60.066 52.381 0.00 0.00 36.82 3.42
1367 1398 2.625737 CAGTGCTTCCATCACCACTAG 58.374 52.381 0.00 0.00 36.47 2.57
1368 1399 1.278985 CCAGTGCTTCCATCACCACTA 59.721 52.381 0.00 0.00 36.47 2.74
1369 1400 0.037303 CCAGTGCTTCCATCACCACT 59.963 55.000 0.00 0.00 38.97 4.00
1370 1401 1.589716 GCCAGTGCTTCCATCACCAC 61.590 60.000 0.00 0.00 35.14 4.16
1371 1402 1.303561 GCCAGTGCTTCCATCACCA 60.304 57.895 0.00 0.00 35.14 4.17
1372 1403 1.303561 TGCCAGTGCTTCCATCACC 60.304 57.895 0.00 0.00 38.71 4.02
1373 1404 1.589716 GGTGCCAGTGCTTCCATCAC 61.590 60.000 0.00 0.00 38.71 3.06
1374 1405 1.303561 GGTGCCAGTGCTTCCATCA 60.304 57.895 0.00 0.00 38.71 3.07
1375 1406 2.401766 CGGTGCCAGTGCTTCCATC 61.402 63.158 0.00 0.00 38.71 3.51
1376 1407 2.360350 CGGTGCCAGTGCTTCCAT 60.360 61.111 0.00 0.00 38.71 3.41
1410 1441 0.896226 GCAGGTTCCCGAAGTAGAGT 59.104 55.000 0.00 0.00 0.00 3.24
1481 1512 3.227276 CCTCGACCATCTCCGGGG 61.227 72.222 0.00 0.00 40.32 5.73
1531 1562 1.819632 GGAAGCGATCGGCCAATGT 60.820 57.895 18.30 0.00 45.17 2.71
1533 1564 2.588877 CGGAAGCGATCGGCCAAT 60.589 61.111 18.30 0.00 45.17 3.16
1535 1566 4.508128 GACGGAAGCGATCGGCCA 62.508 66.667 18.30 0.00 45.17 5.36
1539 1570 1.124462 GATCAAGACGGAAGCGATCG 58.876 55.000 11.69 11.69 0.00 3.69
1550 1581 1.129437 GCAGGCGTTTGAGATCAAGAC 59.871 52.381 0.00 0.00 37.15 3.01
1629 1728 1.153745 GTCCTCGAGCGTGCTCATT 60.154 57.895 20.75 0.00 42.86 2.57
1647 1746 2.125552 TTGATGACCCGCTCGCAG 60.126 61.111 0.00 0.00 0.00 5.18
1697 1796 2.355115 GGGTGGTGGTGGATGGAC 59.645 66.667 0.00 0.00 0.00 4.02
1700 1799 2.294839 TACGGGGTGGTGGTGGATG 61.295 63.158 0.00 0.00 0.00 3.51
1709 1808 0.837272 ATGGAAGATGTACGGGGTGG 59.163 55.000 0.00 0.00 0.00 4.61
1742 1841 2.744787 AAAACGATCGATGCATGAGC 57.255 45.000 24.34 4.05 42.57 4.26
1744 1843 5.733226 AACATAAAACGATCGATGCATGA 57.267 34.783 24.34 2.20 0.00 3.07
1745 1844 5.964751 TGAAACATAAAACGATCGATGCATG 59.035 36.000 24.34 19.52 0.00 4.06
1863 1962 3.041940 GTCCACGACAGGTTGCCG 61.042 66.667 0.00 0.00 32.09 5.69
2064 2163 6.591834 GCTTTTCATGTACTCAGTGATAGTGT 59.408 38.462 0.00 0.00 0.00 3.55
2068 2185 7.038048 CAGAGCTTTTCATGTACTCAGTGATA 58.962 38.462 0.00 0.00 0.00 2.15
2072 2189 5.474578 TCAGAGCTTTTCATGTACTCAGT 57.525 39.130 0.00 0.00 0.00 3.41
2075 2192 6.026513 GCAATTCAGAGCTTTTCATGTACTC 58.973 40.000 0.00 0.00 0.00 2.59
2076 2193 5.105997 GGCAATTCAGAGCTTTTCATGTACT 60.106 40.000 0.00 0.00 0.00 2.73
2103 2229 0.035056 GGCCACTACTCATTGCCAGT 60.035 55.000 0.00 0.00 41.76 4.00
2110 2236 1.944177 AGTGTGAGGCCACTACTCAT 58.056 50.000 5.01 0.00 45.72 2.90
2111 2237 2.447443 CTAGTGTGAGGCCACTACTCA 58.553 52.381 5.01 0.00 43.71 3.41
2112 2238 1.135333 GCTAGTGTGAGGCCACTACTC 59.865 57.143 5.01 1.59 43.71 2.59
2114 2240 0.895530 TGCTAGTGTGAGGCCACTAC 59.104 55.000 5.01 2.53 43.71 2.73
2115 2241 0.895530 GTGCTAGTGTGAGGCCACTA 59.104 55.000 5.01 2.59 43.71 2.74
2116 2242 1.674057 GTGCTAGTGTGAGGCCACT 59.326 57.895 5.01 1.20 46.94 4.00
2117 2243 1.376037 GGTGCTAGTGTGAGGCCAC 60.376 63.158 5.01 0.00 43.46 5.01
2118 2244 0.252057 TAGGTGCTAGTGTGAGGCCA 60.252 55.000 5.01 0.00 0.00 5.36
2119 2245 0.902531 TTAGGTGCTAGTGTGAGGCC 59.097 55.000 0.00 0.00 0.00 5.19
2120 2246 2.762535 TTTAGGTGCTAGTGTGAGGC 57.237 50.000 0.00 0.00 0.00 4.70
2124 2282 5.507315 CCAAAGGTTTTTAGGTGCTAGTGTG 60.507 44.000 0.00 0.00 0.00 3.82
2137 2295 5.683681 ACATTCTGCATTCCAAAGGTTTTT 58.316 33.333 0.00 0.00 0.00 1.94
2144 2302 4.321899 GGTTGCTACATTCTGCATTCCAAA 60.322 41.667 0.00 0.00 39.07 3.28
2147 2305 2.223340 CGGTTGCTACATTCTGCATTCC 60.223 50.000 0.00 0.00 39.07 3.01
2181 2339 6.316140 GGAAACTTCATCTTGGCAAAGTTTTT 59.684 34.615 21.40 6.93 46.43 1.94
2182 2340 5.817296 GGAAACTTCATCTTGGCAAAGTTTT 59.183 36.000 21.40 10.41 46.43 2.43
2185 2343 4.218312 AGGAAACTTCATCTTGGCAAAGT 58.782 39.130 0.00 0.00 37.44 2.66
2201 2359 6.569179 TCCATGTTAGTTAAGCAAGGAAAC 57.431 37.500 0.00 0.00 28.66 2.78
2205 2363 6.678900 GCAGAATCCATGTTAGTTAAGCAAGG 60.679 42.308 0.00 0.00 0.00 3.61
2206 2364 6.094603 AGCAGAATCCATGTTAGTTAAGCAAG 59.905 38.462 0.00 0.00 0.00 4.01
2209 2367 6.094048 TCAAGCAGAATCCATGTTAGTTAAGC 59.906 38.462 0.00 0.00 0.00 3.09
2210 2368 7.615582 TCAAGCAGAATCCATGTTAGTTAAG 57.384 36.000 0.00 0.00 0.00 1.85
2220 2378 7.419711 AGAATGAATTTCAAGCAGAATCCAT 57.580 32.000 2.68 0.00 36.75 3.41
2224 2382 6.805271 CGTGAAGAATGAATTTCAAGCAGAAT 59.195 34.615 2.68 0.00 36.75 2.40
2227 2385 4.855388 CCGTGAAGAATGAATTTCAAGCAG 59.145 41.667 2.68 0.00 36.75 4.24
2228 2386 4.797471 CCGTGAAGAATGAATTTCAAGCA 58.203 39.130 2.68 0.00 36.75 3.91
2230 2388 3.848019 CGCCGTGAAGAATGAATTTCAAG 59.152 43.478 2.68 0.00 36.75 3.02
2249 2408 0.955905 TTACTTTTCTTGGTGCCGCC 59.044 50.000 0.00 0.00 37.90 6.13
2252 2411 3.634910 TCTGGTTTACTTTTCTTGGTGCC 59.365 43.478 0.00 0.00 0.00 5.01
2253 2412 4.338400 ACTCTGGTTTACTTTTCTTGGTGC 59.662 41.667 0.00 0.00 0.00 5.01
2256 2415 6.096282 TGGAAACTCTGGTTTACTTTTCTTGG 59.904 38.462 5.60 0.00 44.35 3.61
2257 2416 7.095695 TGGAAACTCTGGTTTACTTTTCTTG 57.904 36.000 5.60 0.00 44.35 3.02
2260 2419 7.148137 TGTCTTGGAAACTCTGGTTTACTTTTC 60.148 37.037 5.60 0.00 44.35 2.29
2263 2422 5.751586 TGTCTTGGAAACTCTGGTTTACTT 58.248 37.500 5.60 0.00 44.35 2.24
2269 2428 5.071788 TCAGTTATGTCTTGGAAACTCTGGT 59.928 40.000 0.00 0.00 29.93 4.00
2270 2429 5.551233 TCAGTTATGTCTTGGAAACTCTGG 58.449 41.667 0.00 0.00 29.93 3.86
2279 2438 7.962964 TCAGTTAAGTTCAGTTATGTCTTGG 57.037 36.000 0.00 0.00 0.00 3.61
2307 2466 3.938963 TCGATTTCCTGCAGGATTGTTAC 59.061 43.478 35.42 20.55 44.98 2.50
2313 2472 1.748591 GCCTTCGATTTCCTGCAGGAT 60.749 52.381 35.42 22.54 44.98 3.24
2436 2596 1.371337 GCTCCGTGATCTGCATTGCA 61.371 55.000 11.50 11.50 36.92 4.08
2674 2834 5.550290 CAGCAACCCCAATAATTTTCAGTT 58.450 37.500 0.00 0.00 0.00 3.16
2703 2863 5.240891 ACCATGGAAATATATGCTCACGAG 58.759 41.667 21.47 0.00 0.00 4.18
2704 2864 5.227569 ACCATGGAAATATATGCTCACGA 57.772 39.130 21.47 0.00 0.00 4.35
2705 2865 5.106555 GGAACCATGGAAATATATGCTCACG 60.107 44.000 21.47 0.00 0.00 4.35
2790 2952 6.962311 ACTCTATCATCCTCAGCCCAATAATA 59.038 38.462 0.00 0.00 0.00 0.98
2865 3028 7.043961 TGAATCTGACATAACTGCTAGTAGG 57.956 40.000 12.78 0.00 0.00 3.18
2903 3066 6.096705 TGTTGAGTTGATTCTCCAAACAACAT 59.903 34.615 17.59 0.00 44.06 2.71
2927 3090 8.454106 ACGATGTTGAATTAGAAAAGGAGAATG 58.546 33.333 0.00 0.00 0.00 2.67
2928 3091 8.567285 ACGATGTTGAATTAGAAAAGGAGAAT 57.433 30.769 0.00 0.00 0.00 2.40
2929 3092 7.659799 TGACGATGTTGAATTAGAAAAGGAGAA 59.340 33.333 0.00 0.00 0.00 2.87
2931 3094 7.364522 TGACGATGTTGAATTAGAAAAGGAG 57.635 36.000 0.00 0.00 0.00 3.69
2933 3096 7.008628 GCATTGACGATGTTGAATTAGAAAAGG 59.991 37.037 4.58 0.00 38.07 3.11
2934 3097 7.538334 TGCATTGACGATGTTGAATTAGAAAAG 59.462 33.333 4.58 0.00 38.07 2.27
3022 3185 5.069914 TGTGTCTTGTACTCTTGCCTCTAAA 59.930 40.000 0.00 0.00 0.00 1.85
3049 3215 4.164822 CTTCGTGGTACTCCGAAGTTTA 57.835 45.455 25.70 7.27 46.78 2.01
3066 3232 3.541130 CACGATACAACTTACGACCTTCG 59.459 47.826 0.00 0.00 46.93 3.79
3071 3237 4.715896 TCTGTCACGATACAACTTACGAC 58.284 43.478 0.00 0.00 0.00 4.34
3084 3250 2.029110 TGTCATGATTGCTCTGTCACGA 60.029 45.455 0.00 0.00 0.00 4.35
3085 3251 2.340337 TGTCATGATTGCTCTGTCACG 58.660 47.619 0.00 0.00 0.00 4.35
3145 3315 4.581093 GGATTACCCTGGCCCCGC 62.581 72.222 0.00 0.00 0.00 6.13
3262 3432 7.535940 TCTTAATACGCCAATGAAAAGAAAACG 59.464 33.333 0.00 0.00 0.00 3.60
3290 3460 8.659527 AGTGAAGTCATATTTTTCCCCAAATTT 58.340 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.