Multiple sequence alignment - TraesCS6B01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G424900 chr6B 100.000 3239 0 0 1 3239 694162397 694165635 0 5982
1 TraesCS6B01G424900 chr6D 92.606 3273 156 39 1 3239 456494411 456497631 0 4625
2 TraesCS6B01G424900 chr6A 90.058 3289 219 67 1 3239 603202145 603205375 0 4163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G424900 chr6B 694162397 694165635 3238 False 5982 5982 100.000 1 3239 1 chr6B.!!$F1 3238
1 TraesCS6B01G424900 chr6D 456494411 456497631 3220 False 4625 4625 92.606 1 3239 1 chr6D.!!$F1 3238
2 TraesCS6B01G424900 chr6A 603202145 603205375 3230 False 4163 4163 90.058 1 3239 1 chr6A.!!$F1 3238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 894 0.036164 AAGACGGGCTGTGTATGCAA 59.964 50.0 2.25 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 2657 1.372128 GCAGTTGCAAGCCTTTCGG 60.372 57.895 0.0 0.0 41.59 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.063867 ACTATGTCGACTAGTGGCCCT 60.064 52.381 17.92 0.00 0.00 5.19
125 126 3.689649 CCACCTCGACATTTTCTTTAGGG 59.310 47.826 0.00 0.00 0.00 3.53
144 145 1.141881 CCGATCTCCCGGTTGTCAG 59.858 63.158 0.00 0.00 44.23 3.51
223 224 4.101448 GGCACCTCCAGATGGCGT 62.101 66.667 0.00 0.00 34.44 5.68
225 226 2.202797 CACCTCCAGATGGCGTCG 60.203 66.667 0.13 0.00 34.44 5.12
260 261 8.596271 TCGACTAGATCTTTCAGAGTATAGTG 57.404 38.462 0.00 0.00 0.00 2.74
261 262 8.205512 TCGACTAGATCTTTCAGAGTATAGTGT 58.794 37.037 0.00 0.00 0.00 3.55
262 263 8.832521 CGACTAGATCTTTCAGAGTATAGTGTT 58.167 37.037 0.00 0.00 0.00 3.32
303 307 3.838317 TCTAAGGTAGGACATGTGCAAGT 59.162 43.478 20.21 1.22 0.00 3.16
304 308 5.020795 TCTAAGGTAGGACATGTGCAAGTA 58.979 41.667 20.21 0.17 0.00 2.24
321 325 7.398904 TGTGCAAGTAGGTATATATAGCCATCA 59.601 37.037 16.49 5.84 0.00 3.07
334 338 0.106015 GCCATCAACCAGGGGCTATT 60.106 55.000 0.00 0.00 43.09 1.73
342 346 3.074857 ACCAGGGGCTATTGAAGGATA 57.925 47.619 0.00 0.00 0.00 2.59
436 440 5.862924 ATTGACAGTGCAACACATACTAC 57.137 39.130 0.00 0.00 41.43 2.73
482 487 3.473113 AAGATTTGGCAGGGGTACAAT 57.527 42.857 0.00 0.00 0.00 2.71
518 523 8.976353 TGTTGAATGCCACATTTAATATTACCT 58.024 29.630 0.00 0.00 0.00 3.08
519 524 9.816354 GTTGAATGCCACATTTAATATTACCTT 57.184 29.630 0.00 0.00 0.00 3.50
579 584 6.119536 CCTACCATATGCAAAGGTTTCTACA 58.880 40.000 12.49 0.00 36.87 2.74
596 601 3.303135 ACGTTGCGGAGAGGCTGA 61.303 61.111 0.00 0.00 0.00 4.26
631 636 3.829066 TTTTCGTCACGAGAAAACGAG 57.171 42.857 0.00 0.00 45.09 4.18
669 677 9.421806 CAGAATGCCATGAAACAAGTAAAAATA 57.578 29.630 0.00 0.00 0.00 1.40
674 682 8.300286 TGCCATGAAACAAGTAAAAATATCGAA 58.700 29.630 0.00 0.00 0.00 3.71
684 692 9.739786 CAAGTAAAAATATCGAAAACATTTGGC 57.260 29.630 0.00 0.00 0.00 4.52
697 705 1.032014 ATTTGGCGCTTTCAGTGTGT 58.968 45.000 7.64 0.00 0.00 3.72
700 708 1.279840 GGCGCTTTCAGTGTGTCAC 59.720 57.895 7.64 0.00 34.10 3.67
717 725 2.225491 GTCACGCTTAATTTGCCACAGA 59.775 45.455 0.00 0.00 0.00 3.41
723 731 4.744631 CGCTTAATTTGCCACAGACTTTTT 59.255 37.500 0.00 0.00 0.00 1.94
743 751 4.914420 TGTTGCGGTTTTGGCGCG 62.914 61.111 0.00 0.00 0.00 6.86
749 757 2.882132 GGTTTTGGCGCGGCTTAT 59.118 55.556 33.23 0.00 0.00 1.73
750 758 1.214325 GGTTTTGGCGCGGCTTATT 59.786 52.632 33.23 0.00 0.00 1.40
751 759 1.075979 GGTTTTGGCGCGGCTTATTG 61.076 55.000 33.23 0.00 0.00 1.90
754 762 1.244697 TTTGGCGCGGCTTATTGGAA 61.245 50.000 33.23 14.68 0.00 3.53
755 763 1.244697 TTGGCGCGGCTTATTGGAAA 61.245 50.000 33.23 13.89 0.00 3.13
756 764 1.064134 GGCGCGGCTTATTGGAAAG 59.936 57.895 27.05 0.00 0.00 2.62
782 791 2.555664 ACTGTGGATGATTCCTGACCT 58.444 47.619 0.00 0.00 43.07 3.85
783 792 3.724478 ACTGTGGATGATTCCTGACCTA 58.276 45.455 0.00 0.00 43.07 3.08
784 793 3.708631 ACTGTGGATGATTCCTGACCTAG 59.291 47.826 0.00 0.00 43.07 3.02
786 795 4.104086 TGTGGATGATTCCTGACCTAGTT 58.896 43.478 0.00 0.00 43.07 2.24
787 796 4.162320 TGTGGATGATTCCTGACCTAGTTC 59.838 45.833 0.00 0.00 43.07 3.01
789 798 4.406972 TGGATGATTCCTGACCTAGTTCTG 59.593 45.833 0.00 0.00 43.07 3.02
801 810 7.876068 CCTGACCTAGTTCTGTATGTTGTTTAA 59.124 37.037 0.00 0.00 0.00 1.52
855 870 0.771127 AGTTCTTGGGCTGGTTGCTA 59.229 50.000 0.00 0.00 42.39 3.49
864 879 1.407025 GGCTGGTTGCTAGGGTAAGAC 60.407 57.143 0.00 0.00 42.39 3.01
868 883 0.461516 GTTGCTAGGGTAAGACGGGC 60.462 60.000 0.00 0.00 0.00 6.13
869 884 0.616679 TTGCTAGGGTAAGACGGGCT 60.617 55.000 0.00 0.00 0.00 5.19
870 885 1.327690 TGCTAGGGTAAGACGGGCTG 61.328 60.000 0.00 0.00 0.00 4.85
871 886 1.328430 GCTAGGGTAAGACGGGCTGT 61.328 60.000 0.00 0.00 0.00 4.40
872 887 0.460311 CTAGGGTAAGACGGGCTGTG 59.540 60.000 2.25 0.00 0.00 3.66
873 888 0.251922 TAGGGTAAGACGGGCTGTGT 60.252 55.000 2.25 0.00 0.00 3.72
874 889 0.251922 AGGGTAAGACGGGCTGTGTA 60.252 55.000 2.25 0.00 0.00 2.90
875 890 0.828677 GGGTAAGACGGGCTGTGTAT 59.171 55.000 2.25 0.00 0.00 2.29
876 891 1.472728 GGGTAAGACGGGCTGTGTATG 60.473 57.143 2.25 0.00 0.00 2.39
877 892 1.287425 GTAAGACGGGCTGTGTATGC 58.713 55.000 2.25 0.00 0.00 3.14
878 893 0.899019 TAAGACGGGCTGTGTATGCA 59.101 50.000 2.25 0.00 0.00 3.96
879 894 0.036164 AAGACGGGCTGTGTATGCAA 59.964 50.000 2.25 0.00 0.00 4.08
880 895 0.391661 AGACGGGCTGTGTATGCAAG 60.392 55.000 2.25 0.00 0.00 4.01
908 923 1.284297 GCAAAACGGGCTGAATGTGC 61.284 55.000 0.00 1.50 0.00 4.57
911 926 0.604243 AAACGGGCTGAATGTGCGTA 60.604 50.000 0.00 0.00 0.00 4.42
928 945 2.339418 CGTATGTAAGCCCAACGTGAA 58.661 47.619 0.00 0.00 0.00 3.18
961 978 1.062428 TCCTTATCCATCGTCCCACCT 60.062 52.381 0.00 0.00 0.00 4.00
962 979 2.178325 TCCTTATCCATCGTCCCACCTA 59.822 50.000 0.00 0.00 0.00 3.08
964 981 2.005370 TATCCATCGTCCCACCTACC 57.995 55.000 0.00 0.00 0.00 3.18
966 983 1.382695 CCATCGTCCCACCTACCCT 60.383 63.158 0.00 0.00 0.00 4.34
967 984 1.400530 CCATCGTCCCACCTACCCTC 61.401 65.000 0.00 0.00 0.00 4.30
970 987 1.212934 TCGTCCCACCTACCCTCTCT 61.213 60.000 0.00 0.00 0.00 3.10
971 988 1.038130 CGTCCCACCTACCCTCTCTG 61.038 65.000 0.00 0.00 0.00 3.35
972 989 0.688087 GTCCCACCTACCCTCTCTGG 60.688 65.000 0.00 0.00 0.00 3.86
985 1007 0.923729 TCTCTGGCTCTCTCCCTCCT 60.924 60.000 0.00 0.00 0.00 3.69
986 1008 0.468029 CTCTGGCTCTCTCCCTCCTC 60.468 65.000 0.00 0.00 0.00 3.71
1006 1037 0.660488 CACTCTCTCCTCGATGTCGG 59.340 60.000 2.25 0.00 40.29 4.79
1008 1039 1.077716 TCTCTCCTCGATGTCGGCA 60.078 57.895 0.00 0.00 40.29 5.69
1110 1141 4.227134 CCCCATCACTCCTCGCGG 62.227 72.222 6.13 0.00 0.00 6.46
2218 2255 0.617535 TGGTAGGCAGCTAGGAGCAA 60.618 55.000 0.64 0.00 45.56 3.91
2341 2379 6.658816 ACAAATGGCAGAATATTACTGTGACA 59.341 34.615 13.14 7.02 37.64 3.58
2442 2480 8.314751 TGTAAGGAAGATTCAAGAACCTTCTAG 58.685 37.037 14.76 0.00 38.45 2.43
2446 2484 6.759356 GGAAGATTCAAGAACCTTCTAGTAGC 59.241 42.308 14.76 0.00 36.28 3.58
2513 2557 1.159285 TGATGCTTCAAAGGCAGTCG 58.841 50.000 0.00 0.00 43.15 4.18
2531 2579 4.453478 CAGTCGGACCCATTCATGATAATG 59.547 45.833 4.14 0.00 36.74 1.90
2601 2649 2.103042 GGCACAGTCCATGCTCGAC 61.103 63.158 0.00 0.00 42.93 4.20
2609 2657 2.158959 CCATGCTCGACGGTCGTTC 61.159 63.158 27.53 20.15 41.35 3.95
2639 2687 3.811722 TGCAACTGCGAAGTGATAAAG 57.188 42.857 0.00 0.00 45.83 1.85
2648 2696 4.213270 TGCGAAGTGATAAAGTGGAAGTTG 59.787 41.667 0.00 0.00 0.00 3.16
2690 2740 8.528044 TCACTGTGGAGTGTATATACATACAA 57.472 34.615 18.27 6.98 46.60 2.41
2710 2760 9.764363 CATACAAGCATCTGGAAAATACTAGTA 57.236 33.333 4.77 4.77 0.00 1.82
2813 2863 4.158764 ACAGTCTGTGCTCTCTAATGTACC 59.841 45.833 4.21 0.00 0.00 3.34
2845 2895 7.431668 ACTTCGTCGCAAGTAAGATACTTTATC 59.568 37.037 7.89 0.00 46.27 1.75
2941 2992 8.606040 AAATAATGTGAAATTTGAAGGTGGTG 57.394 30.769 0.00 0.00 0.00 4.17
2944 2995 5.452078 TGTGAAATTTGAAGGTGGTGATC 57.548 39.130 0.00 0.00 0.00 2.92
3054 3105 8.066612 ACCGAAATGATGTTATCCTGAAAATT 57.933 30.769 0.00 0.00 0.00 1.82
3056 3107 9.450807 CCGAAATGATGTTATCCTGAAAATTAC 57.549 33.333 0.00 0.00 0.00 1.89
3197 3248 5.860611 TGAACATCTTTTTCTTCCCTACGA 58.139 37.500 0.00 0.00 0.00 3.43
3203 3254 7.549488 ACATCTTTTTCTTCCCTACGAATACAG 59.451 37.037 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.218316 CCAAGGGCCACTAGTCGAC 59.782 63.158 7.70 7.70 0.00 4.20
39 40 3.488090 GCTACCGTCAGCCGTTGC 61.488 66.667 0.00 0.00 35.40 4.17
71 72 2.709213 GCTCCATCAACTCAAGAGCTT 58.291 47.619 3.16 0.00 45.11 3.74
180 181 2.045536 AAGCCTGCCTGCAGCTAC 60.046 61.111 13.63 5.42 44.23 3.58
192 193 0.610232 GGTGCCACATCAAGAAGCCT 60.610 55.000 0.00 0.00 0.00 4.58
225 226 8.869583 CTGAAAGATCTAGTCGATGTCGAAAGC 61.870 44.444 6.69 0.00 44.11 3.51
241 242 7.397476 TCCACAACACTATACTCTGAAAGATCT 59.603 37.037 0.00 0.00 45.62 2.75
260 261 1.160329 ACAGAGCGCAAGTCCACAAC 61.160 55.000 11.47 0.00 41.68 3.32
261 262 0.463654 AACAGAGCGCAAGTCCACAA 60.464 50.000 11.47 0.00 41.68 3.33
262 263 0.463654 AAACAGAGCGCAAGTCCACA 60.464 50.000 11.47 0.00 41.68 4.17
303 307 6.844388 CCCTGGTTGATGGCTATATATACCTA 59.156 42.308 10.71 0.00 0.00 3.08
304 308 5.667626 CCCTGGTTGATGGCTATATATACCT 59.332 44.000 10.71 1.01 0.00 3.08
321 325 1.681229 TCCTTCAATAGCCCCTGGTT 58.319 50.000 0.00 0.00 0.00 3.67
379 383 4.513692 GGCGTTTATGGTATGCATTAGTGA 59.486 41.667 3.54 0.00 0.00 3.41
415 419 4.698575 TGTAGTATGTGTTGCACTGTCAA 58.301 39.130 0.00 0.00 35.11 3.18
469 474 7.858498 ACATATACTATAATTGTACCCCTGCC 58.142 38.462 0.00 0.00 0.00 4.85
579 584 2.867855 TTCAGCCTCTCCGCAACGT 61.868 57.895 0.00 0.00 0.00 3.99
614 619 0.662374 GCCTCGTTTTCTCGTGACGA 60.662 55.000 7.70 7.70 42.76 4.20
620 625 0.451135 CTTTGCGCCTCGTTTTCTCG 60.451 55.000 4.18 0.00 0.00 4.04
643 648 7.712264 TTTTTACTTGTTTCATGGCATTCTG 57.288 32.000 0.00 0.00 0.00 3.02
661 666 6.892430 GCGCCAAATGTTTTCGATATTTTTAC 59.108 34.615 0.00 0.00 27.87 2.01
665 673 4.743493 AGCGCCAAATGTTTTCGATATTT 58.257 34.783 2.29 0.00 30.17 1.40
669 677 2.723124 AAGCGCCAAATGTTTTCGAT 57.277 40.000 2.29 0.00 0.00 3.59
674 682 2.159114 ACACTGAAAGCGCCAAATGTTT 60.159 40.909 2.29 0.00 37.60 2.83
678 686 1.001378 GACACACTGAAAGCGCCAAAT 60.001 47.619 2.29 0.00 37.60 2.32
681 689 1.153269 TGACACACTGAAAGCGCCA 60.153 52.632 2.29 0.00 37.60 5.69
684 692 1.083401 GCGTGACACACTGAAAGCG 60.083 57.895 6.37 0.00 37.60 4.68
697 705 2.225491 GTCTGTGGCAAATTAAGCGTGA 59.775 45.455 0.00 0.00 0.00 4.35
700 708 3.559238 AAGTCTGTGGCAAATTAAGCG 57.441 42.857 0.00 0.00 0.00 4.68
723 731 2.373938 CGCCAAAACCGCAACAAAA 58.626 47.368 0.00 0.00 0.00 2.44
732 740 1.075979 CAATAAGCCGCGCCAAAACC 61.076 55.000 0.00 0.00 0.00 3.27
733 741 1.075979 CCAATAAGCCGCGCCAAAAC 61.076 55.000 0.00 0.00 0.00 2.43
770 779 5.958380 ACATACAGAACTAGGTCAGGAATCA 59.042 40.000 11.14 0.00 0.00 2.57
773 782 5.542635 ACAACATACAGAACTAGGTCAGGAA 59.457 40.000 11.14 0.00 0.00 3.36
776 785 8.827177 TTAAACAACATACAGAACTAGGTCAG 57.173 34.615 11.14 4.29 0.00 3.51
818 827 6.803154 AGAACTAGGGTTTCGAATTTTCTG 57.197 37.500 0.00 0.00 35.58 3.02
819 828 6.206829 CCAAGAACTAGGGTTTCGAATTTTCT 59.793 38.462 0.00 0.00 35.58 2.52
820 829 6.379386 CCAAGAACTAGGGTTTCGAATTTTC 58.621 40.000 0.00 0.00 35.58 2.29
849 864 0.461516 GCCCGTCTTACCCTAGCAAC 60.462 60.000 0.00 0.00 0.00 4.17
855 870 0.251922 TACACAGCCCGTCTTACCCT 60.252 55.000 0.00 0.00 0.00 4.34
864 879 2.764314 GGCTTGCATACACAGCCCG 61.764 63.158 14.38 0.00 40.91 6.13
868 883 1.246649 TGTTGGGCTTGCATACACAG 58.753 50.000 0.00 0.00 0.00 3.66
869 884 1.612950 CTTGTTGGGCTTGCATACACA 59.387 47.619 0.00 0.00 0.00 3.72
870 885 1.669795 GCTTGTTGGGCTTGCATACAC 60.670 52.381 0.00 0.00 0.00 2.90
871 886 0.602562 GCTTGTTGGGCTTGCATACA 59.397 50.000 0.00 0.00 0.00 2.29
872 887 0.602562 TGCTTGTTGGGCTTGCATAC 59.397 50.000 0.00 0.00 0.00 2.39
873 888 1.336131 TTGCTTGTTGGGCTTGCATA 58.664 45.000 0.00 0.00 33.50 3.14
874 889 0.469070 TTTGCTTGTTGGGCTTGCAT 59.531 45.000 0.00 0.00 33.50 3.96
875 890 0.251354 TTTTGCTTGTTGGGCTTGCA 59.749 45.000 0.00 0.00 0.00 4.08
876 891 0.657312 GTTTTGCTTGTTGGGCTTGC 59.343 50.000 0.00 0.00 0.00 4.01
877 892 0.929615 CGTTTTGCTTGTTGGGCTTG 59.070 50.000 0.00 0.00 0.00 4.01
878 893 0.179086 CCGTTTTGCTTGTTGGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
879 894 1.441311 CCGTTTTGCTTGTTGGGCT 59.559 52.632 0.00 0.00 0.00 5.19
880 895 1.594021 CCCGTTTTGCTTGTTGGGC 60.594 57.895 0.00 0.00 0.00 5.36
908 923 1.999048 TCACGTTGGGCTTACATACG 58.001 50.000 0.00 0.00 38.14 3.06
911 926 2.491693 CCATTTCACGTTGGGCTTACAT 59.508 45.455 0.00 0.00 0.00 2.29
928 945 2.359249 GGATAAGGAAGGCCCAACCATT 60.359 50.000 0.00 0.38 43.14 3.16
964 981 0.468029 GAGGGAGAGAGCCAGAGAGG 60.468 65.000 0.00 0.00 41.84 3.69
966 983 0.923729 AGGAGGGAGAGAGCCAGAGA 60.924 60.000 0.00 0.00 0.00 3.10
967 984 0.468029 GAGGAGGGAGAGAGCCAGAG 60.468 65.000 0.00 0.00 0.00 3.35
970 987 2.249125 TGGAGGAGGGAGAGAGCCA 61.249 63.158 0.00 0.00 0.00 4.75
971 988 1.760480 GTGGAGGAGGGAGAGAGCC 60.760 68.421 0.00 0.00 0.00 4.70
972 989 0.755327 GAGTGGAGGAGGGAGAGAGC 60.755 65.000 0.00 0.00 0.00 4.09
985 1007 1.744114 CGACATCGAGGAGAGAGTGGA 60.744 57.143 3.06 0.00 43.02 4.02
986 1008 0.660488 CGACATCGAGGAGAGAGTGG 59.340 60.000 3.06 0.00 43.02 4.00
1083 1114 3.791586 TGATGGGGAATCGGCGCA 61.792 61.111 10.83 0.00 38.22 6.09
1087 1118 0.394565 GAGGAGTGATGGGGAATCGG 59.605 60.000 0.00 0.00 38.22 4.18
1088 1119 0.032678 CGAGGAGTGATGGGGAATCG 59.967 60.000 0.00 0.00 38.22 3.34
1091 1122 2.721167 CGCGAGGAGTGATGGGGAA 61.721 63.158 0.00 0.00 0.00 3.97
1092 1123 3.147595 CGCGAGGAGTGATGGGGA 61.148 66.667 0.00 0.00 0.00 4.81
1905 1936 1.739562 GAGCGTGGTGAAGAGGCAG 60.740 63.158 0.00 0.00 0.00 4.85
2034 2065 3.071206 ATGTCGCAGGTCTCGGCT 61.071 61.111 0.00 0.00 32.08 5.52
2182 2213 1.745489 CATCAGCAGCAGCAGCAGA 60.745 57.895 12.92 10.06 45.49 4.26
2218 2255 2.289694 CCTAGCCAACAACACTAGCAGT 60.290 50.000 0.00 0.00 33.53 4.40
2293 2330 8.547481 TGTTTCATCCTCTATATGTACCAAGA 57.453 34.615 0.00 0.00 0.00 3.02
2442 2480 7.595502 CAGTAGGCTATACACAATACTTGCTAC 59.404 40.741 0.00 0.00 0.00 3.58
2446 2484 6.817184 ACCAGTAGGCTATACACAATACTTG 58.183 40.000 0.00 0.00 39.06 3.16
2609 2657 1.372128 GCAGTTGCAAGCCTTTCGG 60.372 57.895 0.00 0.00 41.59 4.30
2639 2687 4.457466 TCCTTGGTTCTAACAACTTCCAC 58.543 43.478 0.00 0.00 0.00 4.02
2648 2696 5.409826 CACAGTGAGAATCCTTGGTTCTAAC 59.590 44.000 0.00 0.00 37.34 2.34
2686 2736 9.197306 TCTACTAGTATTTTCCAGATGCTTGTA 57.803 33.333 2.33 0.00 30.85 2.41
2710 2760 4.524328 CCCAGCAGTCTTTTGGTATTTTCT 59.476 41.667 0.00 0.00 0.00 2.52
2718 2768 2.616510 CCTCTACCCAGCAGTCTTTTGG 60.617 54.545 0.00 0.00 0.00 3.28
2845 2895 9.743057 AGAGAATGTATAAGAAAACATCTCTCG 57.257 33.333 14.59 0.00 40.46 4.04
2944 2995 7.653713 ACGCTGGTTTCTGTATGATTAGATAAG 59.346 37.037 0.00 0.00 0.00 1.73
3054 3105 7.309805 GCTCACATGTATATATCCCTGTGTGTA 60.310 40.741 11.58 0.00 37.54 2.90
3056 3107 5.871524 GCTCACATGTATATATCCCTGTGTG 59.128 44.000 11.58 10.62 36.33 3.82
3091 3142 1.755380 AGCTTACTACACCGATGGACC 59.245 52.381 0.00 0.00 0.00 4.46
3186 3237 4.768448 TGTTGTCTGTATTCGTAGGGAAGA 59.232 41.667 0.00 0.00 38.24 2.87
3197 3248 7.554835 TGTAAAGACTTTGGTGTTGTCTGTATT 59.445 33.333 10.80 0.00 40.44 1.89
3203 3254 7.305474 CCATATGTAAAGACTTTGGTGTTGTC 58.695 38.462 10.80 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.