Multiple sequence alignment - TraesCS6B01G424800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G424800 chr6B 100.000 3985 0 0 1 3985 694124482 694128466 0.000000e+00 7360.0
1 TraesCS6B01G424800 chr6B 86.522 460 58 3 1746 2202 506170702 506171160 1.650000e-138 503.0
2 TraesCS6B01G424800 chr6B 94.805 77 4 0 2609 2685 146382590 146382666 1.950000e-23 121.0
3 TraesCS6B01G424800 chr6B 77.586 174 29 7 1579 1744 71613447 71613618 3.280000e-16 97.1
4 TraesCS6B01G424800 chr6A 83.830 2381 247 89 1 2309 603190922 603193236 0.000000e+00 2137.0
5 TraesCS6B01G424800 chr6A 81.176 1360 155 54 2478 3799 603193494 603194790 0.000000e+00 1000.0
6 TraesCS6B01G424800 chr6D 86.122 1261 123 27 1 1247 456462683 456463905 0.000000e+00 1312.0
7 TraesCS6B01G424800 chr6D 88.031 894 70 21 2490 3368 456465069 456465940 0.000000e+00 1024.0
8 TraesCS6B01G424800 chr6D 85.714 749 90 14 1641 2385 456464257 456464992 0.000000e+00 774.0
9 TraesCS6B01G424800 chr6D 84.385 602 52 24 3268 3852 456466065 456466641 1.620000e-153 553.0
10 TraesCS6B01G424800 chr4B 84.874 595 67 14 1751 2340 637471790 637471214 2.670000e-161 579.0
11 TraesCS6B01G424800 chr4B 81.360 397 56 10 967 1361 473671572 473671192 1.390000e-79 307.0
12 TraesCS6B01G424800 chr4B 83.699 319 35 10 948 1264 367070019 367070322 6.520000e-73 285.0
13 TraesCS6B01G424800 chr4B 83.648 318 34 11 951 1266 363880433 363880132 2.340000e-72 283.0
14 TraesCS6B01G424800 chr4B 82.704 318 38 9 951 1266 208020624 208020322 2.360000e-67 267.0
15 TraesCS6B01G424800 chr4B 75.862 174 32 7 1579 1744 367070570 367070741 3.300000e-11 80.5
16 TraesCS6B01G424800 chr2D 88.496 452 51 1 1830 2281 253619320 253619770 2.710000e-151 545.0
17 TraesCS6B01G424800 chr7B 86.207 493 64 3 1792 2281 312025435 312025926 7.580000e-147 531.0
18 TraesCS6B01G424800 chr7B 83.051 413 51 10 948 1358 483310902 483311297 1.360000e-94 357.0
19 TraesCS6B01G424800 chr7B 82.334 317 37 11 951 1265 416187658 416187359 1.420000e-64 257.0
20 TraesCS6B01G424800 chr7B 74.280 486 82 29 1290 1744 483311769 483312242 8.860000e-37 165.0
21 TraesCS6B01G424800 chr7B 78.286 175 33 5 1290 1463 736346189 736346019 1.510000e-19 108.0
22 TraesCS6B01G424800 chr7B 77.059 170 28 8 1579 1739 688775106 688775273 1.970000e-13 87.9
23 TraesCS6B01G424800 chr7A 86.522 460 58 3 1746 2202 718416116 718416574 1.650000e-138 503.0
24 TraesCS6B01G424800 chr7A 87.263 369 42 5 1021 1389 598322357 598321994 2.220000e-112 416.0
25 TraesCS6B01G424800 chr7A 91.729 266 18 3 1432 1696 598321996 598321734 2.260000e-97 366.0
26 TraesCS6B01G424800 chr4A 86.522 460 58 3 1746 2202 735512594 735513052 1.650000e-138 503.0
27 TraesCS6B01G424800 chr2B 86.755 453 57 2 1753 2202 19184991 19184539 5.950000e-138 501.0
28 TraesCS6B01G424800 chr2B 82.620 397 48 12 965 1358 203581334 203581712 8.250000e-87 331.0
29 TraesCS6B01G424800 chr2B 76.364 275 45 16 1206 1463 407862316 407862045 3.230000e-26 130.0
30 TraesCS6B01G424800 chr7D 89.583 192 18 2 1506 1696 75654688 75654878 3.980000e-60 243.0
31 TraesCS6B01G424800 chr5B 87.413 143 13 4 1162 1302 382324231 382324092 4.120000e-35 159.0
32 TraesCS6B01G424800 chr5B 88.983 118 6 3 948 1065 435850151 435850041 5.370000e-29 139.0
33 TraesCS6B01G424800 chr1D 89.831 118 5 3 948 1065 473888482 473888592 1.150000e-30 145.0
34 TraesCS6B01G424800 chr1D 86.923 130 12 3 948 1077 487325491 487325615 1.490000e-29 141.0
35 TraesCS6B01G424800 chr1D 78.261 115 23 2 1630 1744 487326003 487326115 5.520000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G424800 chr6B 694124482 694128466 3984 False 7360.00 7360 100.0000 1 3985 1 chr6B.!!$F4 3984
1 TraesCS6B01G424800 chr6A 603190922 603194790 3868 False 1568.50 2137 82.5030 1 3799 2 chr6A.!!$F1 3798
2 TraesCS6B01G424800 chr6D 456462683 456466641 3958 False 915.75 1312 86.0630 1 3852 4 chr6D.!!$F1 3851
3 TraesCS6B01G424800 chr4B 637471214 637471790 576 True 579.00 579 84.8740 1751 2340 1 chr4B.!!$R4 589
4 TraesCS6B01G424800 chr7B 483310902 483312242 1340 False 261.00 357 78.6655 948 1744 2 chr7B.!!$F3 796
5 TraesCS6B01G424800 chr7A 598321734 598322357 623 True 391.00 416 89.4960 1021 1696 2 chr7A.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 822 0.035439 TCCACGCCCTCTTTTCATCC 60.035 55.0 0.0 0.0 0.00 3.51 F
1302 1358 0.248580 TTGCTCGTTGCTTTGCTGTG 60.249 50.0 5.0 0.0 43.37 3.66 F
2322 2642 0.179124 GCGTGTCCTTGCTAGAGAGG 60.179 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1845 0.744057 TGACAGCCACACACACACAG 60.744 55.0 0.00 0.0 0.00 3.66 R
2844 3325 0.108992 CCACCAGCAATGACATGTGC 60.109 55.0 1.15 0.0 41.22 4.57 R
3852 4600 0.322816 AAAGGTGCATGCGGACATCT 60.323 50.0 14.09 0.0 34.61 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 5.125097 CAGAAAATGCTTTATGACCAGCTCT 59.875 40.000 0.00 0.00 36.10 4.09
183 184 9.703892 CATAACAAACATTTCATAAGGGAAACA 57.296 29.630 0.00 0.00 39.40 2.83
186 187 7.791029 ACAAACATTTCATAAGGGAAACAGTT 58.209 30.769 0.00 0.00 39.40 3.16
190 191 7.830739 ACATTTCATAAGGGAAACAGTTCATC 58.169 34.615 0.00 0.00 39.40 2.92
192 193 5.414789 TCATAAGGGAAACAGTTCATCGA 57.585 39.130 0.00 0.00 35.25 3.59
195 196 6.884295 TCATAAGGGAAACAGTTCATCGAAAT 59.116 34.615 0.00 0.00 35.25 2.17
259 260 2.439701 TCGAACTCCCTCGCGGAT 60.440 61.111 6.13 0.00 41.00 4.18
306 307 2.135933 GTTCCTGAAGACCTGAACACG 58.864 52.381 0.00 0.00 0.00 4.49
323 324 2.223479 ACACGACAATGCAGGAACAAAC 60.223 45.455 0.00 0.00 0.00 2.93
381 385 3.451894 CAAATCCTGCGGGTGGCC 61.452 66.667 12.43 0.00 42.61 5.36
400 423 2.016318 CCTATGCGGCACATCAAAGAA 58.984 47.619 4.03 0.00 40.38 2.52
401 424 2.423185 CCTATGCGGCACATCAAAGAAA 59.577 45.455 4.03 0.00 40.38 2.52
402 425 2.352503 ATGCGGCACATCAAAGAAAC 57.647 45.000 4.03 0.00 31.52 2.78
403 426 0.040514 TGCGGCACATCAAAGAAACG 60.041 50.000 0.00 0.00 0.00 3.60
406 429 2.856720 GCGGCACATCAAAGAAACGAAA 60.857 45.455 0.00 0.00 0.00 3.46
414 440 0.928451 AAAGAAACGAAACAGCGCGC 60.928 50.000 26.66 26.66 33.86 6.86
415 441 3.150485 GAAACGAAACAGCGCGCG 61.150 61.111 28.44 28.44 33.86 6.86
451 477 3.834799 GTCGTGTAGGGGCGGGAG 61.835 72.222 0.00 0.00 0.00 4.30
567 593 4.452733 GGGCCTTCTGGACGTCGG 62.453 72.222 9.92 5.74 44.25 4.79
661 687 4.154347 CAGGGCGAGCACCTCCTC 62.154 72.222 0.00 0.00 35.78 3.71
664 690 3.474570 GGCGAGCACCTCCTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
665 691 2.107953 GCGAGCACCTCCTCCATC 59.892 66.667 0.00 0.00 0.00 3.51
681 707 1.228367 ATCTCCATGGCCGCCATTC 60.228 57.895 22.88 0.00 42.23 2.67
689 715 4.570874 GCCGCCATTCCCTCCTCC 62.571 72.222 0.00 0.00 0.00 4.30
690 716 3.878667 CCGCCATTCCCTCCTCCC 61.879 72.222 0.00 0.00 0.00 4.30
691 717 3.089874 CGCCATTCCCTCCTCCCA 61.090 66.667 0.00 0.00 0.00 4.37
713 740 0.830648 CAGACCCCTCCTCGCAATTA 59.169 55.000 0.00 0.00 0.00 1.40
745 772 0.675522 GGGACGGATCGGCAAGAAAA 60.676 55.000 0.00 0.00 36.10 2.29
759 787 3.215597 GAAAACGCCCCCAAACCCG 62.216 63.158 0.00 0.00 0.00 5.28
777 805 2.356741 CCCGAAGCCCTAATTTCTTCCA 60.357 50.000 0.00 0.00 34.32 3.53
793 822 0.035439 TCCACGCCCTCTTTTCATCC 60.035 55.000 0.00 0.00 0.00 3.51
801 830 1.355720 CCTCTTTTCATCCACCACCCT 59.644 52.381 0.00 0.00 0.00 4.34
802 831 2.576191 CCTCTTTTCATCCACCACCCTA 59.424 50.000 0.00 0.00 0.00 3.53
803 832 3.610911 CTCTTTTCATCCACCACCCTAC 58.389 50.000 0.00 0.00 0.00 3.18
806 835 0.988832 TTCATCCACCACCCTACACC 59.011 55.000 0.00 0.00 0.00 4.16
808 837 0.035439 CATCCACCACCCTACACCAC 60.035 60.000 0.00 0.00 0.00 4.16
809 838 1.550130 ATCCACCACCCTACACCACG 61.550 60.000 0.00 0.00 0.00 4.94
811 840 3.633116 ACCACCCTACACCACGCC 61.633 66.667 0.00 0.00 0.00 5.68
812 841 4.752879 CCACCCTACACCACGCCG 62.753 72.222 0.00 0.00 0.00 6.46
813 842 3.998672 CACCCTACACCACGCCGT 61.999 66.667 0.00 0.00 0.00 5.68
820 849 2.195922 CTACACCACGCCGTATTTACC 58.804 52.381 0.00 0.00 0.00 2.85
821 850 0.321021 ACACCACGCCGTATTTACCA 59.679 50.000 0.00 0.00 0.00 3.25
822 851 1.065998 ACACCACGCCGTATTTACCAT 60.066 47.619 0.00 0.00 0.00 3.55
823 852 2.011222 CACCACGCCGTATTTACCATT 58.989 47.619 0.00 0.00 0.00 3.16
828 857 4.523813 CACGCCGTATTTACCATTTCATC 58.476 43.478 0.00 0.00 0.00 2.92
835 864 6.360329 CGTATTTACCATTTCATCGCTTACC 58.640 40.000 0.00 0.00 0.00 2.85
836 865 4.868450 TTTACCATTTCATCGCTTACCG 57.132 40.909 0.00 0.00 38.61 4.02
884 913 2.303311 GTTAGGGATGAGATACAGGGGC 59.697 54.545 0.00 0.00 0.00 5.80
957 986 4.880426 TCGCCTCCCATCCTCCCC 62.880 72.222 0.00 0.00 0.00 4.81
958 987 4.888325 CGCCTCCCATCCTCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
959 988 2.851588 GCCTCCCATCCTCCCCTC 60.852 72.222 0.00 0.00 0.00 4.30
960 989 3.041365 CCTCCCATCCTCCCCTCT 58.959 66.667 0.00 0.00 0.00 3.69
963 992 2.525381 CCCATCCTCCCCTCTCCG 60.525 72.222 0.00 0.00 0.00 4.63
1096 1128 1.005557 CGTGGTAGTCTCGTAGCGTAC 60.006 57.143 0.00 0.00 0.00 3.67
1109 1141 1.276622 AGCGTACTCCTGGTTGGATT 58.723 50.000 0.00 0.00 45.16 3.01
1135 1169 0.874390 TGCTGTGCTTCGATTTGGAC 59.126 50.000 0.00 0.00 0.00 4.02
1138 1172 1.225745 GTGCTTCGATTTGGACGCG 60.226 57.895 3.53 3.53 34.23 6.01
1139 1173 2.276680 GCTTCGATTTGGACGCGC 60.277 61.111 5.73 0.00 0.00 6.86
1140 1174 2.399611 CTTCGATTTGGACGCGCC 59.600 61.111 5.73 9.63 37.10 6.53
1141 1175 3.095898 CTTCGATTTGGACGCGCCC 62.096 63.158 3.72 3.72 34.97 6.13
1142 1176 3.885538 TTCGATTTGGACGCGCCCA 62.886 57.895 11.19 11.19 34.97 5.36
1143 1177 3.427425 CGATTTGGACGCGCCCAA 61.427 61.111 23.73 23.73 43.90 4.12
1145 1179 2.596046 ATTTGGACGCGCCCAACA 60.596 55.556 27.22 17.48 45.13 3.33
1146 1180 2.796245 GATTTGGACGCGCCCAACAC 62.796 60.000 27.22 18.59 45.13 3.32
1147 1181 4.858680 TTGGACGCGCCCAACACA 62.859 61.111 23.73 0.05 40.99 3.72
1249 1289 5.658634 AGATGTGGTGTAGAAGATGCTTAGA 59.341 40.000 0.00 0.00 0.00 2.10
1288 1328 3.546670 CGATAGTTCGTGTAAGGTTGCTC 59.453 47.826 0.00 0.00 40.53 4.26
1302 1358 0.248580 TTGCTCGTTGCTTTGCTGTG 60.249 50.000 5.00 0.00 43.37 3.66
1341 1399 4.574828 TCATTTTCCTCGCCAGTAATTAGC 59.425 41.667 0.00 0.00 0.00 3.09
1392 1458 5.355071 GGAAGTGAAACATATCTGTGATGCA 59.645 40.000 0.00 0.00 41.43 3.96
1401 1467 2.975732 TCTGTGATGCACTCATCCTC 57.024 50.000 0.00 0.00 46.60 3.71
1432 1498 3.070018 CTGTGACTAGCTTTTCCTGGTG 58.930 50.000 0.00 0.00 0.00 4.17
1443 1509 3.467374 TTTCCTGGTGAAAAATGGTGC 57.533 42.857 0.00 0.00 39.98 5.01
1444 1510 0.958091 TCCTGGTGAAAAATGGTGCG 59.042 50.000 0.00 0.00 0.00 5.34
1484 1554 3.311322 TGTTTGTCAGTTCCGATGTGTTC 59.689 43.478 0.00 0.00 0.00 3.18
1529 1615 7.095313 GGTTTTACTCTGTTGTAAAGGAGCTAC 60.095 40.741 0.00 0.00 41.51 3.58
1548 1634 2.522185 ACTGTGCATGATGCTTTCCTT 58.478 42.857 19.19 0.00 45.31 3.36
1569 1659 1.134907 CCTGATTGTTTCATGGCCTGC 60.135 52.381 3.32 0.00 32.72 4.85
1572 1662 1.606885 ATTGTTTCATGGCCTGCGGG 61.607 55.000 7.41 7.41 0.00 6.13
1596 1694 6.263168 GGGTTGTTGTATTAGATCTTGGATGG 59.737 42.308 0.00 0.00 0.00 3.51
1619 1717 1.600957 CATTAGGGCAGTTGCATCTCG 59.399 52.381 6.43 0.00 44.36 4.04
1635 1741 1.446099 TCGCAGGTCGAGTGATTGC 60.446 57.895 0.00 0.00 43.16 3.56
1638 1744 1.089920 GCAGGTCGAGTGATTGCAAT 58.910 50.000 12.83 12.83 37.45 3.56
1659 1765 6.255453 GCAATTTTTCTCAGTTGCTTGTGTTA 59.745 34.615 0.00 0.00 42.61 2.41
1690 1796 7.553402 TGCCTCGATAAGTAGGTATAATCTCTC 59.447 40.741 0.00 0.00 35.16 3.20
1702 1808 7.057264 AGGTATAATCTCTCTTTTCCTTTGGC 58.943 38.462 0.00 0.00 0.00 4.52
1777 1889 7.174599 GGCTGTCATGCATCTCTAGATTATTTT 59.825 37.037 0.00 0.00 31.21 1.82
2129 2448 3.056749 AGGACGGTGTCTTCATGTACTTC 60.057 47.826 0.00 0.00 32.47 3.01
2159 2478 7.982354 GGTACTGCTAAGTTCTTATGATGACTT 59.018 37.037 0.00 0.00 37.88 3.01
2160 2479 9.026074 GTACTGCTAAGTTCTTATGATGACTTC 57.974 37.037 0.35 0.00 37.88 3.01
2161 2480 7.615403 ACTGCTAAGTTCTTATGATGACTTCA 58.385 34.615 0.35 0.00 33.53 3.02
2162 2481 7.763528 ACTGCTAAGTTCTTATGATGACTTCAG 59.236 37.037 0.35 5.31 32.76 3.02
2163 2482 7.615403 TGCTAAGTTCTTATGATGACTTCAGT 58.385 34.615 0.35 0.00 37.89 3.41
2164 2483 7.761704 TGCTAAGTTCTTATGATGACTTCAGTC 59.238 37.037 0.00 0.00 44.97 3.51
2185 2504 6.000219 AGTCATTCTGCAATCTTGTACTGTT 59.000 36.000 0.00 0.00 0.00 3.16
2189 2508 5.422666 TCTGCAATCTTGTACTGTTGTTG 57.577 39.130 0.00 0.00 0.00 3.33
2196 2515 9.672086 GCAATCTTGTACTGTTGTTGTTTAATA 57.328 29.630 0.00 0.00 0.00 0.98
2207 2526 8.397575 TGTTGTTGTTTAATATGCCTAGTGAA 57.602 30.769 0.00 0.00 0.00 3.18
2216 2535 8.972458 TTAATATGCCTAGTGAATTTGCTGTA 57.028 30.769 0.00 0.00 0.00 2.74
2238 2557 3.887352 TGTTAACCTGTTAGTTGCCACA 58.113 40.909 2.48 0.00 0.00 4.17
2249 2568 8.138712 CCTGTTAGTTGCCACAGTTTAATTTTA 58.861 33.333 0.00 0.00 39.09 1.52
2250 2569 9.180678 CTGTTAGTTGCCACAGTTTAATTTTAG 57.819 33.333 0.00 0.00 36.44 1.85
2263 2582 9.810545 CAGTTTAATTTTAGGAAACCACTTGAA 57.189 29.630 0.00 0.00 34.31 2.69
2268 2587 8.887036 AATTTTAGGAAACCACTTGAATGAAC 57.113 30.769 0.00 0.00 0.00 3.18
2269 2588 7.411486 TTTTAGGAAACCACTTGAATGAACA 57.589 32.000 0.00 0.00 0.00 3.18
2274 2593 6.098124 AGGAAACCACTTGAATGAACAAATGA 59.902 34.615 0.00 0.00 30.11 2.57
2313 2633 5.612276 GCAAAATTACAATTGCGTGTCCTTG 60.612 40.000 5.05 2.60 42.05 3.61
2321 2641 0.528017 TGCGTGTCCTTGCTAGAGAG 59.472 55.000 0.00 0.00 0.00 3.20
2322 2642 0.179124 GCGTGTCCTTGCTAGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
2325 2645 2.672478 CGTGTCCTTGCTAGAGAGGTTG 60.672 54.545 10.55 0.00 34.57 3.77
2330 2650 3.259374 TCCTTGCTAGAGAGGTTGAGTTG 59.741 47.826 10.55 0.00 34.57 3.16
2332 2652 3.667497 TGCTAGAGAGGTTGAGTTGTG 57.333 47.619 0.00 0.00 0.00 3.33
2357 2677 9.558396 TGGTTTGAAAGAAAATTTAATGCATCT 57.442 25.926 0.00 0.00 0.00 2.90
2387 2749 4.924305 TTCTATGGGATTGCTCATTTGC 57.076 40.909 0.00 0.00 36.40 3.68
2400 2762 3.655486 CTCATTTGCCACAATGAAGCAA 58.345 40.909 9.78 9.78 44.32 3.91
2401 2763 3.391965 TCATTTGCCACAATGAAGCAAC 58.608 40.909 12.58 0.00 45.57 4.17
2402 2764 2.975732 TTTGCCACAATGAAGCAACA 57.024 40.000 12.58 4.39 45.57 3.33
2403 2765 3.472283 TTTGCCACAATGAAGCAACAT 57.528 38.095 12.58 0.00 45.57 2.71
2427 2803 3.256558 GCAAATTGGCCAGAAGAACATC 58.743 45.455 5.11 0.00 0.00 3.06
2428 2804 3.306225 GCAAATTGGCCAGAAGAACATCA 60.306 43.478 5.11 0.00 0.00 3.07
2429 2805 4.622220 GCAAATTGGCCAGAAGAACATCAT 60.622 41.667 5.11 0.00 0.00 2.45
2436 2812 3.311871 GCCAGAAGAACATCATAGTGCAG 59.688 47.826 0.00 0.00 0.00 4.41
2454 2830 4.487948 TGCAGTCTTCTATTGCATTTTGC 58.512 39.130 0.00 0.00 44.97 3.68
2455 2831 3.861689 GCAGTCTTCTATTGCATTTTGCC 59.138 43.478 0.00 0.00 44.23 4.52
2457 2833 4.860907 CAGTCTTCTATTGCATTTTGCCAC 59.139 41.667 0.00 0.00 44.23 5.01
2458 2834 4.082026 AGTCTTCTATTGCATTTTGCCACC 60.082 41.667 0.00 0.00 44.23 4.61
2459 2835 3.195396 TCTTCTATTGCATTTTGCCACCC 59.805 43.478 0.00 0.00 44.23 4.61
2501 2947 5.633830 TTCCTCTTTCATGTGAGAATTGC 57.366 39.130 12.29 0.00 32.44 3.56
2523 2969 5.009310 TGCTTAGTCTTAACGTTGTCTGAGA 59.991 40.000 11.99 3.78 0.00 3.27
2555 3002 3.262660 TCTGCATTCTGATCTGTCAACCT 59.737 43.478 0.00 0.00 33.05 3.50
2558 3005 4.456911 TGCATTCTGATCTGTCAACCTTTC 59.543 41.667 0.00 0.00 33.05 2.62
2560 3007 5.163774 GCATTCTGATCTGTCAACCTTTCTC 60.164 44.000 0.00 0.00 33.05 2.87
2596 3046 6.245408 TGTTGGATAGTAGTGGCTGATTTTT 58.755 36.000 0.00 0.00 0.00 1.94
2685 3160 5.760131 CCAAAGGGAGAGATGAAAGGTATT 58.240 41.667 0.00 0.00 35.59 1.89
2686 3161 5.591877 CCAAAGGGAGAGATGAAAGGTATTG 59.408 44.000 0.00 0.00 35.59 1.90
2700 3175 8.158169 TGAAAGGTATTGATCATATCACTTGC 57.842 34.615 0.00 0.00 39.39 4.01
2702 3177 7.741027 AAGGTATTGATCATATCACTTGCTG 57.259 36.000 0.00 0.00 39.39 4.41
2703 3178 7.071069 AGGTATTGATCATATCACTTGCTGA 57.929 36.000 0.00 0.00 39.39 4.26
2704 3179 7.687388 AGGTATTGATCATATCACTTGCTGAT 58.313 34.615 0.00 0.00 42.68 2.90
2706 3181 8.449397 GGTATTGATCATATCACTTGCTGATTC 58.551 37.037 0.00 0.00 40.38 2.52
2708 3183 7.492352 TTGATCATATCACTTGCTGATTCTG 57.508 36.000 0.00 0.00 40.38 3.02
2761 3240 7.305418 GCAGTTGAAACTTGAAAGTAACAATCG 60.305 37.037 13.83 10.70 38.57 3.34
2821 3302 8.885494 AAGATTAGCTAACTAAAGCAGATCAG 57.115 34.615 8.70 0.00 45.30 2.90
2822 3303 6.928492 AGATTAGCTAACTAAAGCAGATCAGC 59.072 38.462 8.70 1.07 45.30 4.26
2843 3324 5.862924 GCACAAGCTATCAACACTCTTTA 57.137 39.130 0.00 0.00 37.91 1.85
2844 3325 5.862811 GCACAAGCTATCAACACTCTTTAG 58.137 41.667 0.00 0.00 37.91 1.85
2845 3326 5.672321 GCACAAGCTATCAACACTCTTTAGC 60.672 44.000 0.00 0.00 37.91 3.09
2846 3327 5.409520 CACAAGCTATCAACACTCTTTAGCA 59.590 40.000 0.00 0.00 38.15 3.49
2850 3346 5.583854 AGCTATCAACACTCTTTAGCACATG 59.416 40.000 0.00 0.00 38.15 3.21
2855 3351 5.764686 TCAACACTCTTTAGCACATGTCATT 59.235 36.000 0.00 0.00 0.00 2.57
2882 3378 2.019984 GGAACAGCCTGATGGATTGAC 58.980 52.381 0.00 0.00 34.57 3.18
2896 3392 6.994496 TGATGGATTGACACATTCTTCTATCC 59.006 38.462 5.44 5.44 41.72 2.59
3014 3510 2.609984 CCGGAGCAGCTAGATGATCAAG 60.610 54.545 25.79 18.45 37.33 3.02
3114 3614 4.080356 TGCTGGATTATGGTCTGTTAGCTT 60.080 41.667 0.00 0.00 0.00 3.74
3115 3615 4.884164 GCTGGATTATGGTCTGTTAGCTTT 59.116 41.667 0.00 0.00 0.00 3.51
3116 3616 5.008118 GCTGGATTATGGTCTGTTAGCTTTC 59.992 44.000 0.00 0.00 0.00 2.62
3161 3661 4.202461 TGGCTACTGAGATTTGGTGAGTTT 60.202 41.667 0.00 0.00 0.00 2.66
3162 3662 4.154918 GGCTACTGAGATTTGGTGAGTTTG 59.845 45.833 0.00 0.00 0.00 2.93
3163 3663 4.997395 GCTACTGAGATTTGGTGAGTTTGA 59.003 41.667 0.00 0.00 0.00 2.69
3184 3684 4.279169 TGATGAACCTGAAAGAGCTTTTGG 59.721 41.667 11.67 11.67 34.07 3.28
3207 3707 4.816925 GTCCTATTTATCTCTGTTGTGGCC 59.183 45.833 0.00 0.00 0.00 5.36
3209 3709 4.576463 CCTATTTATCTCTGTTGTGGCCAC 59.424 45.833 29.67 29.67 0.00 5.01
3223 3723 1.833630 TGGCCACTATTCACCTGAGAG 59.166 52.381 0.00 0.00 0.00 3.20
3240 3740 1.004044 AGAGGTCTGGCTTGGATGTTG 59.996 52.381 0.00 0.00 0.00 3.33
3241 3741 0.610232 AGGTCTGGCTTGGATGTTGC 60.610 55.000 0.00 0.00 0.00 4.17
3242 3742 0.610232 GGTCTGGCTTGGATGTTGCT 60.610 55.000 0.00 0.00 0.00 3.91
3263 3763 4.611581 GCTTTAGTCTGTTGCTAAGTGTGC 60.612 45.833 0.00 0.00 31.13 4.57
3264 3764 2.918712 AGTCTGTTGCTAAGTGTGCT 57.081 45.000 0.00 0.00 0.00 4.40
3279 3779 2.068519 TGTGCTAGCTTGTGATGAACG 58.931 47.619 17.23 0.00 0.00 3.95
3394 4122 3.823304 GAGAATGTTTGGTCCTTCTGCTT 59.177 43.478 0.00 0.00 0.00 3.91
3396 4124 4.651045 AGAATGTTTGGTCCTTCTGCTTTT 59.349 37.500 0.00 0.00 0.00 2.27
3397 4125 5.129320 AGAATGTTTGGTCCTTCTGCTTTTT 59.871 36.000 0.00 0.00 0.00 1.94
3476 4204 2.158682 TGGTGAATGTAGCAAGGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
3481 4215 3.988976 ATGTAGCAAGGTGTGTCTCAT 57.011 42.857 0.00 0.00 0.00 2.90
3503 4237 8.114331 TCATCTGTTCAAAATGCAGAAACTAT 57.886 30.769 0.00 0.00 41.75 2.12
3504 4238 8.579006 TCATCTGTTCAAAATGCAGAAACTATT 58.421 29.630 0.00 0.00 41.75 1.73
3562 4296 2.163454 TGGGAGCCCAAGAACATGT 58.837 52.632 5.60 0.00 44.12 3.21
3563 4297 0.038166 TGGGAGCCCAAGAACATGTC 59.962 55.000 5.60 0.00 44.12 3.06
3564 4298 0.038166 GGGAGCCCAAGAACATGTCA 59.962 55.000 0.00 0.00 35.81 3.58
3565 4299 1.457346 GGAGCCCAAGAACATGTCAG 58.543 55.000 0.00 0.00 0.00 3.51
3567 4301 0.038744 AGCCCAAGAACATGTCAGGG 59.961 55.000 16.39 16.39 43.44 4.45
3569 4303 1.952367 GCCCAAGAACATGTCAGGGAG 60.952 57.143 22.05 8.54 43.33 4.30
3570 4304 1.340405 CCCAAGAACATGTCAGGGAGG 60.340 57.143 15.91 6.93 43.33 4.30
3571 4305 1.457346 CAAGAACATGTCAGGGAGGC 58.543 55.000 0.00 0.00 0.00 4.70
3573 4307 1.293062 AGAACATGTCAGGGAGGCAT 58.707 50.000 0.00 0.00 45.27 4.40
3574 4308 1.211457 AGAACATGTCAGGGAGGCATC 59.789 52.381 0.00 0.00 41.62 3.91
3577 4311 1.133884 ACATGTCAGGGAGGCATCATG 60.134 52.381 0.00 0.00 41.62 3.07
3579 4313 1.288188 TGTCAGGGAGGCATCATGAA 58.712 50.000 0.00 0.00 0.00 2.57
3580 4314 1.634973 TGTCAGGGAGGCATCATGAAA 59.365 47.619 0.00 0.00 0.00 2.69
3602 4341 3.950397 TCGTGCTCTGTATCCCAAAAAT 58.050 40.909 0.00 0.00 0.00 1.82
3603 4342 3.938963 TCGTGCTCTGTATCCCAAAAATC 59.061 43.478 0.00 0.00 0.00 2.17
3605 4344 4.016444 GTGCTCTGTATCCCAAAAATCCA 58.984 43.478 0.00 0.00 0.00 3.41
3606 4345 4.646492 GTGCTCTGTATCCCAAAAATCCAT 59.354 41.667 0.00 0.00 0.00 3.41
3607 4346 4.646040 TGCTCTGTATCCCAAAAATCCATG 59.354 41.667 0.00 0.00 0.00 3.66
3608 4347 4.889409 GCTCTGTATCCCAAAAATCCATGA 59.111 41.667 0.00 0.00 0.00 3.07
3609 4348 5.221126 GCTCTGTATCCCAAAAATCCATGAC 60.221 44.000 0.00 0.00 0.00 3.06
3610 4349 5.825532 TCTGTATCCCAAAAATCCATGACA 58.174 37.500 0.00 0.00 0.00 3.58
3611 4350 6.434302 TCTGTATCCCAAAAATCCATGACAT 58.566 36.000 0.00 0.00 0.00 3.06
3612 4351 7.581814 TCTGTATCCCAAAAATCCATGACATA 58.418 34.615 0.00 0.00 0.00 2.29
3613 4352 7.502226 TCTGTATCCCAAAAATCCATGACATAC 59.498 37.037 0.00 0.00 0.00 2.39
3614 4353 7.122048 TGTATCCCAAAAATCCATGACATACA 58.878 34.615 0.00 0.00 0.00 2.29
3647 4386 5.242393 ACAAACAGCAACTATGAGAGCATTT 59.758 36.000 0.00 0.00 35.94 2.32
3649 4388 7.121759 ACAAACAGCAACTATGAGAGCATTTAT 59.878 33.333 0.00 0.00 35.94 1.40
3650 4389 6.615264 ACAGCAACTATGAGAGCATTTATG 57.385 37.500 0.00 0.00 35.94 1.90
3651 4390 6.118170 ACAGCAACTATGAGAGCATTTATGT 58.882 36.000 0.00 0.00 35.94 2.29
3652 4391 6.600822 ACAGCAACTATGAGAGCATTTATGTT 59.399 34.615 0.00 0.00 35.94 2.71
3653 4392 7.121759 ACAGCAACTATGAGAGCATTTATGTTT 59.878 33.333 0.00 0.00 35.94 2.83
3654 4393 7.431376 CAGCAACTATGAGAGCATTTATGTTTG 59.569 37.037 0.00 0.00 35.94 2.93
3655 4394 6.197842 GCAACTATGAGAGCATTTATGTTTGC 59.802 38.462 0.00 0.00 39.17 3.68
3658 4397 7.829725 ACTATGAGAGCATTTATGTTTGCAAA 58.170 30.769 8.05 8.05 41.35 3.68
3659 4398 8.472413 ACTATGAGAGCATTTATGTTTGCAAAT 58.528 29.630 16.21 2.51 41.35 2.32
3660 4399 9.309516 CTATGAGAGCATTTATGTTTGCAAATT 57.690 29.630 16.21 8.87 41.35 1.82
3661 4400 7.966246 TGAGAGCATTTATGTTTGCAAATTT 57.034 28.000 16.21 8.50 41.35 1.82
3665 4404 6.764094 AGCATTTATGTTTGCAAATTTAGCG 58.236 32.000 16.21 3.34 41.35 4.26
3705 4444 9.487790 TTTAACTGCAAATTTATCTTCAAAGGG 57.512 29.630 0.00 0.00 0.00 3.95
3707 4446 5.011943 ACTGCAAATTTATCTTCAAAGGGCA 59.988 36.000 0.00 0.00 0.00 5.36
3711 4450 6.204495 GCAAATTTATCTTCAAAGGGCAAACA 59.796 34.615 0.00 0.00 0.00 2.83
3747 4494 2.623889 AGATAGTTTAGCGAGTCGGCAT 59.376 45.455 15.52 0.41 34.64 4.40
3756 4503 1.645034 CGAGTCGGCATGTCTTGAAT 58.355 50.000 4.10 0.00 0.00 2.57
3762 4510 1.728490 GGCATGTCTTGAATCCGGGC 61.728 60.000 0.00 0.00 0.00 6.13
3781 4529 3.057946 GGGCACATCTGAACTCACTTTTC 60.058 47.826 0.00 0.00 0.00 2.29
3852 4600 5.384063 AATTTCCGTGCATACATGTTTGA 57.616 34.783 18.99 3.00 0.00 2.69
3853 4601 4.418013 TTTCCGTGCATACATGTTTGAG 57.582 40.909 18.99 9.42 0.00 3.02
3854 4602 3.326836 TCCGTGCATACATGTTTGAGA 57.673 42.857 18.99 7.37 0.00 3.27
3855 4603 3.872696 TCCGTGCATACATGTTTGAGAT 58.127 40.909 18.99 0.00 0.00 2.75
3856 4604 3.622612 TCCGTGCATACATGTTTGAGATG 59.377 43.478 18.99 10.35 0.00 2.90
3857 4605 3.374988 CCGTGCATACATGTTTGAGATGT 59.625 43.478 18.99 0.00 37.75 3.06
3858 4606 4.494690 CCGTGCATACATGTTTGAGATGTC 60.495 45.833 18.99 6.72 35.62 3.06
3859 4607 4.494690 CGTGCATACATGTTTGAGATGTCC 60.495 45.833 18.99 4.16 35.62 4.02
3860 4608 3.622612 TGCATACATGTTTGAGATGTCCG 59.377 43.478 18.99 0.00 35.62 4.79
3861 4609 3.546815 GCATACATGTTTGAGATGTCCGC 60.547 47.826 18.99 0.00 35.62 5.54
3862 4610 2.183478 ACATGTTTGAGATGTCCGCA 57.817 45.000 0.00 0.00 27.16 5.69
3863 4611 2.715046 ACATGTTTGAGATGTCCGCAT 58.285 42.857 0.00 0.00 38.18 4.73
3864 4612 2.421073 ACATGTTTGAGATGTCCGCATG 59.579 45.455 13.16 13.16 38.41 4.06
3865 4613 0.804364 TGTTTGAGATGTCCGCATGC 59.196 50.000 7.91 7.91 35.07 4.06
3866 4614 0.804364 GTTTGAGATGTCCGCATGCA 59.196 50.000 19.57 0.00 35.07 3.96
3867 4615 0.804364 TTTGAGATGTCCGCATGCAC 59.196 50.000 19.57 9.97 35.07 4.57
3868 4616 1.026182 TTGAGATGTCCGCATGCACC 61.026 55.000 19.57 4.85 35.07 5.01
3869 4617 1.153289 GAGATGTCCGCATGCACCT 60.153 57.895 19.57 1.76 35.07 4.00
3870 4618 0.745845 GAGATGTCCGCATGCACCTT 60.746 55.000 19.57 2.46 35.07 3.50
3871 4619 0.322816 AGATGTCCGCATGCACCTTT 60.323 50.000 19.57 0.00 35.07 3.11
3872 4620 0.527565 GATGTCCGCATGCACCTTTT 59.472 50.000 19.57 0.00 35.07 2.27
3873 4621 0.527565 ATGTCCGCATGCACCTTTTC 59.472 50.000 19.57 1.09 33.37 2.29
3874 4622 1.212751 GTCCGCATGCACCTTTTCC 59.787 57.895 19.57 0.00 0.00 3.13
3875 4623 1.976474 TCCGCATGCACCTTTTCCC 60.976 57.895 19.57 0.00 0.00 3.97
3876 4624 2.274645 CCGCATGCACCTTTTCCCA 61.275 57.895 19.57 0.00 0.00 4.37
3877 4625 1.213537 CGCATGCACCTTTTCCCAG 59.786 57.895 19.57 0.00 0.00 4.45
3878 4626 1.526575 CGCATGCACCTTTTCCCAGT 61.527 55.000 19.57 0.00 0.00 4.00
3879 4627 0.681175 GCATGCACCTTTTCCCAGTT 59.319 50.000 14.21 0.00 0.00 3.16
3880 4628 1.070601 GCATGCACCTTTTCCCAGTTT 59.929 47.619 14.21 0.00 0.00 2.66
3881 4629 2.485302 GCATGCACCTTTTCCCAGTTTT 60.485 45.455 14.21 0.00 0.00 2.43
3882 4630 3.807553 CATGCACCTTTTCCCAGTTTTT 58.192 40.909 0.00 0.00 0.00 1.94
3906 4654 8.458212 TTTTTGGCATTTTGAAATGTGTTTTC 57.542 26.923 15.57 1.19 45.77 2.29
3907 4655 5.747951 TGGCATTTTGAAATGTGTTTTCC 57.252 34.783 15.57 9.02 45.77 3.13
3908 4656 5.188434 TGGCATTTTGAAATGTGTTTTCCA 58.812 33.333 15.57 10.98 45.77 3.53
3909 4657 5.649395 TGGCATTTTGAAATGTGTTTTCCAA 59.351 32.000 15.57 0.00 45.77 3.53
3910 4658 6.183360 TGGCATTTTGAAATGTGTTTTCCAAG 60.183 34.615 15.57 0.00 45.77 3.61
3911 4659 6.200808 GCATTTTGAAATGTGTTTTCCAAGG 58.799 36.000 15.57 0.00 45.77 3.61
3912 4660 6.183360 GCATTTTGAAATGTGTTTTCCAAGGT 60.183 34.615 15.57 0.00 45.77 3.50
3913 4661 6.734104 TTTTGAAATGTGTTTTCCAAGGTG 57.266 33.333 0.00 0.00 42.63 4.00
3914 4662 5.413309 TTGAAATGTGTTTTCCAAGGTGT 57.587 34.783 0.00 0.00 42.63 4.16
3915 4663 4.753233 TGAAATGTGTTTTCCAAGGTGTG 58.247 39.130 0.00 0.00 42.63 3.82
3916 4664 4.221703 TGAAATGTGTTTTCCAAGGTGTGT 59.778 37.500 0.00 0.00 42.63 3.72
3917 4665 4.817318 AATGTGTTTTCCAAGGTGTGTT 57.183 36.364 0.00 0.00 0.00 3.32
3918 4666 5.923733 AATGTGTTTTCCAAGGTGTGTTA 57.076 34.783 0.00 0.00 0.00 2.41
3919 4667 5.923733 ATGTGTTTTCCAAGGTGTGTTAA 57.076 34.783 0.00 0.00 0.00 2.01
3920 4668 5.923733 TGTGTTTTCCAAGGTGTGTTAAT 57.076 34.783 0.00 0.00 0.00 1.40
3921 4669 7.589958 ATGTGTTTTCCAAGGTGTGTTAATA 57.410 32.000 0.00 0.00 0.00 0.98
3922 4670 7.589958 TGTGTTTTCCAAGGTGTGTTAATAT 57.410 32.000 0.00 0.00 0.00 1.28
3923 4671 7.653647 TGTGTTTTCCAAGGTGTGTTAATATC 58.346 34.615 0.00 0.00 0.00 1.63
3924 4672 7.504238 TGTGTTTTCCAAGGTGTGTTAATATCT 59.496 33.333 0.00 0.00 0.00 1.98
3925 4673 9.005777 GTGTTTTCCAAGGTGTGTTAATATCTA 57.994 33.333 0.00 0.00 0.00 1.98
3926 4674 9.226606 TGTTTTCCAAGGTGTGTTAATATCTAG 57.773 33.333 0.00 0.00 0.00 2.43
3927 4675 9.227777 GTTTTCCAAGGTGTGTTAATATCTAGT 57.772 33.333 0.00 0.00 0.00 2.57
3928 4676 9.802039 TTTTCCAAGGTGTGTTAATATCTAGTT 57.198 29.630 0.00 0.00 0.00 2.24
3929 4677 8.786826 TTCCAAGGTGTGTTAATATCTAGTTG 57.213 34.615 0.00 0.00 0.00 3.16
3930 4678 7.335627 TCCAAGGTGTGTTAATATCTAGTTGG 58.664 38.462 0.00 0.00 0.00 3.77
3931 4679 6.542370 CCAAGGTGTGTTAATATCTAGTTGGG 59.458 42.308 0.00 0.00 0.00 4.12
3932 4680 6.886178 AGGTGTGTTAATATCTAGTTGGGT 57.114 37.500 0.00 0.00 0.00 4.51
3933 4681 7.266905 AGGTGTGTTAATATCTAGTTGGGTT 57.733 36.000 0.00 0.00 0.00 4.11
3934 4682 7.336396 AGGTGTGTTAATATCTAGTTGGGTTC 58.664 38.462 0.00 0.00 0.00 3.62
3935 4683 7.037873 AGGTGTGTTAATATCTAGTTGGGTTCA 60.038 37.037 0.00 0.00 0.00 3.18
3936 4684 7.773690 GGTGTGTTAATATCTAGTTGGGTTCAT 59.226 37.037 0.00 0.00 0.00 2.57
3937 4685 8.827677 GTGTGTTAATATCTAGTTGGGTTCATC 58.172 37.037 0.00 0.00 0.00 2.92
3938 4686 7.990886 TGTGTTAATATCTAGTTGGGTTCATCC 59.009 37.037 0.00 0.00 0.00 3.51
3939 4687 7.990886 GTGTTAATATCTAGTTGGGTTCATCCA 59.009 37.037 0.00 0.00 38.11 3.41
3940 4688 8.723365 TGTTAATATCTAGTTGGGTTCATCCAT 58.277 33.333 0.00 0.00 36.58 3.41
3941 4689 9.003658 GTTAATATCTAGTTGGGTTCATCCATG 57.996 37.037 0.00 0.00 36.58 3.66
3942 4690 3.281727 TCTAGTTGGGTTCATCCATGC 57.718 47.619 0.00 0.00 36.58 4.06
3943 4691 2.575735 TCTAGTTGGGTTCATCCATGCA 59.424 45.455 0.00 0.00 36.58 3.96
3944 4692 1.549203 AGTTGGGTTCATCCATGCAC 58.451 50.000 0.00 0.00 36.58 4.57
3945 4693 1.076024 AGTTGGGTTCATCCATGCACT 59.924 47.619 0.00 0.00 36.58 4.40
3946 4694 1.895131 GTTGGGTTCATCCATGCACTT 59.105 47.619 0.00 0.00 36.58 3.16
3947 4695 1.838112 TGGGTTCATCCATGCACTTC 58.162 50.000 0.00 0.00 38.11 3.01
3948 4696 1.355381 TGGGTTCATCCATGCACTTCT 59.645 47.619 0.00 0.00 38.11 2.85
3949 4697 2.575735 TGGGTTCATCCATGCACTTCTA 59.424 45.455 0.00 0.00 38.11 2.10
3950 4698 3.010027 TGGGTTCATCCATGCACTTCTAA 59.990 43.478 0.00 0.00 38.11 2.10
3951 4699 4.210331 GGGTTCATCCATGCACTTCTAAT 58.790 43.478 0.00 0.00 38.11 1.73
3952 4700 5.104151 TGGGTTCATCCATGCACTTCTAATA 60.104 40.000 0.00 0.00 38.11 0.98
3953 4701 5.471456 GGGTTCATCCATGCACTTCTAATAG 59.529 44.000 0.00 0.00 38.11 1.73
3954 4702 6.058183 GGTTCATCCATGCACTTCTAATAGT 58.942 40.000 0.00 0.00 35.97 2.12
3955 4703 6.543831 GGTTCATCCATGCACTTCTAATAGTT 59.456 38.462 0.00 0.00 35.97 2.24
3956 4704 7.067494 GGTTCATCCATGCACTTCTAATAGTTT 59.933 37.037 0.00 0.00 35.97 2.66
3957 4705 9.109393 GTTCATCCATGCACTTCTAATAGTTTA 57.891 33.333 0.00 0.00 0.00 2.01
3958 4706 8.893219 TCATCCATGCACTTCTAATAGTTTAG 57.107 34.615 0.00 0.00 36.87 1.85
3959 4707 7.442364 TCATCCATGCACTTCTAATAGTTTAGC 59.558 37.037 0.00 0.00 35.72 3.09
3960 4708 6.889198 TCCATGCACTTCTAATAGTTTAGCT 58.111 36.000 0.00 0.00 35.72 3.32
3961 4709 8.018537 TCCATGCACTTCTAATAGTTTAGCTA 57.981 34.615 0.00 0.00 35.72 3.32
3962 4710 8.482943 TCCATGCACTTCTAATAGTTTAGCTAA 58.517 33.333 0.86 0.86 35.72 3.09
3963 4711 8.768955 CCATGCACTTCTAATAGTTTAGCTAAG 58.231 37.037 6.24 0.00 35.72 2.18
3964 4712 9.319143 CATGCACTTCTAATAGTTTAGCTAAGT 57.681 33.333 6.24 1.12 34.92 2.24
3965 4713 9.892130 ATGCACTTCTAATAGTTTAGCTAAGTT 57.108 29.630 6.24 1.92 33.50 2.66
3966 4714 9.720769 TGCACTTCTAATAGTTTAGCTAAGTTT 57.279 29.630 6.24 2.56 33.50 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 1.654954 GGGTGCTGATGCTCTGCTTG 61.655 60.000 13.26 0.00 41.21 4.01
138 139 0.239347 GATTATGCGGGTGCTGATGC 59.761 55.000 0.00 0.00 43.34 3.91
175 176 4.455877 GTGATTTCGATGAACTGTTTCCCT 59.544 41.667 0.00 0.00 0.00 4.20
176 177 4.379499 GGTGATTTCGATGAACTGTTTCCC 60.379 45.833 0.00 0.00 0.00 3.97
177 178 4.455877 AGGTGATTTCGATGAACTGTTTCC 59.544 41.667 0.00 0.00 0.00 3.13
183 184 3.347216 CCCAAGGTGATTTCGATGAACT 58.653 45.455 0.00 0.00 0.00 3.01
186 187 1.912731 TCCCCAAGGTGATTTCGATGA 59.087 47.619 0.00 0.00 0.00 2.92
190 191 1.544246 GGTTTCCCCAAGGTGATTTCG 59.456 52.381 0.00 0.00 0.00 3.46
259 260 2.036098 TCCGGGCAGTACGAGGAA 59.964 61.111 0.00 0.00 0.00 3.36
306 307 2.362077 ACCAGTTTGTTCCTGCATTGTC 59.638 45.455 0.00 0.00 0.00 3.18
341 342 3.055602 TGTGCTGAATGCTGTATCTGAGT 60.056 43.478 0.00 0.00 43.37 3.41
346 347 4.424061 TTTGTGTGCTGAATGCTGTATC 57.576 40.909 0.00 0.00 43.37 2.24
381 385 3.429085 GTTTCTTTGATGTGCCGCATAG 58.571 45.455 0.00 0.00 38.06 2.23
395 418 0.928451 GCGCGCTGTTTCGTTTCTTT 60.928 50.000 26.67 0.00 0.00 2.52
400 423 4.349871 GTCGCGCGCTGTTTCGTT 62.350 61.111 30.48 0.00 0.00 3.85
403 426 4.470050 CTCGTCGCGCGCTGTTTC 62.470 66.667 30.48 12.96 41.07 2.78
434 460 3.834799 CTCCCGCCCCTACACGAC 61.835 72.222 0.00 0.00 0.00 4.34
447 473 2.459202 TTTCGGTTTCGCCTCCTCCC 62.459 60.000 0.00 0.00 36.13 4.30
451 477 0.037046 TAGGTTTCGGTTTCGCCTCC 60.037 55.000 0.00 0.00 36.13 4.30
662 688 1.521450 GAATGGCGGCCATGGAGATG 61.521 60.000 33.56 1.93 44.40 2.90
663 689 1.228367 GAATGGCGGCCATGGAGAT 60.228 57.895 33.56 18.63 44.40 2.75
664 690 2.192979 GAATGGCGGCCATGGAGA 59.807 61.111 33.56 6.05 44.40 3.71
665 691 2.908940 GGAATGGCGGCCATGGAG 60.909 66.667 33.56 9.81 44.40 3.86
681 707 1.687493 GGTCTGAGTGGGAGGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
689 715 2.055042 CGAGGAGGGGTCTGAGTGG 61.055 68.421 0.00 0.00 0.00 4.00
690 716 2.716017 GCGAGGAGGGGTCTGAGTG 61.716 68.421 0.00 0.00 0.00 3.51
691 717 2.363147 GCGAGGAGGGGTCTGAGT 60.363 66.667 0.00 0.00 0.00 3.41
713 740 3.003763 GTCCCTGAGGAAGCCGGT 61.004 66.667 0.00 0.00 46.38 5.28
745 772 4.653888 CTTCGGGTTTGGGGGCGT 62.654 66.667 0.00 0.00 0.00 5.68
759 787 2.097629 GCGTGGAAGAAATTAGGGCTTC 59.902 50.000 0.00 0.00 37.80 3.86
777 805 0.322546 GGTGGATGAAAAGAGGGCGT 60.323 55.000 0.00 0.00 0.00 5.68
793 822 2.358247 GCGTGGTGTAGGGTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
801 830 1.547820 TGGTAAATACGGCGTGGTGTA 59.452 47.619 24.86 7.93 0.00 2.90
802 831 0.321021 TGGTAAATACGGCGTGGTGT 59.679 50.000 24.86 9.01 0.00 4.16
803 832 1.658994 ATGGTAAATACGGCGTGGTG 58.341 50.000 24.86 0.00 0.00 4.17
806 835 4.523813 GATGAAATGGTAAATACGGCGTG 58.476 43.478 24.86 0.00 0.00 5.34
808 837 3.794536 CGATGAAATGGTAAATACGGCG 58.205 45.455 4.80 4.80 0.00 6.46
809 838 3.250040 AGCGATGAAATGGTAAATACGGC 59.750 43.478 0.00 0.00 0.00 5.68
811 840 6.360329 GGTAAGCGATGAAATGGTAAATACG 58.640 40.000 0.00 0.00 0.00 3.06
812 841 6.201425 TCGGTAAGCGATGAAATGGTAAATAC 59.799 38.462 0.00 0.00 0.00 1.89
813 842 6.282167 TCGGTAAGCGATGAAATGGTAAATA 58.718 36.000 0.00 0.00 0.00 1.40
820 849 2.652662 GCTCGGTAAGCGATGAAATG 57.347 50.000 0.00 0.00 42.21 2.32
852 881 2.588856 ATCCCTAACTTCACCCGCGC 62.589 60.000 0.00 0.00 0.00 6.86
884 913 3.505184 GGCCGTTATGCACCCACG 61.505 66.667 7.08 7.08 0.00 4.94
988 1020 3.589988 GCTTCGACATCTTGGAAGAAGA 58.410 45.455 7.13 0.00 39.56 2.87
989 1021 2.346847 CGCTTCGACATCTTGGAAGAAG 59.653 50.000 4.34 0.00 39.56 2.85
990 1022 2.029380 TCGCTTCGACATCTTGGAAGAA 60.029 45.455 4.34 0.00 39.56 2.52
1135 1169 1.274798 GAAAACATGTGTTGGGCGCG 61.275 55.000 5.84 0.00 38.44 6.86
1138 1172 1.866601 GCAAGAAAACATGTGTTGGGC 59.133 47.619 5.84 3.16 38.44 5.36
1139 1173 3.457610 AGCAAGAAAACATGTGTTGGG 57.542 42.857 5.84 0.00 38.44 4.12
1140 1174 4.202101 TGGTAGCAAGAAAACATGTGTTGG 60.202 41.667 5.84 0.00 38.44 3.77
1141 1175 4.930963 TGGTAGCAAGAAAACATGTGTTG 58.069 39.130 5.84 6.11 38.44 3.33
1142 1176 4.644685 ACTGGTAGCAAGAAAACATGTGTT 59.355 37.500 0.00 0.00 40.50 3.32
1143 1177 4.207165 ACTGGTAGCAAGAAAACATGTGT 58.793 39.130 0.00 0.00 0.00 3.72
1145 1179 5.621193 ACTACTGGTAGCAAGAAAACATGT 58.379 37.500 7.58 0.00 36.66 3.21
1146 1180 5.163953 CGACTACTGGTAGCAAGAAAACATG 60.164 44.000 7.58 0.00 36.66 3.21
1147 1181 4.929808 CGACTACTGGTAGCAAGAAAACAT 59.070 41.667 7.58 0.00 36.66 2.71
1270 1310 1.068127 ACGAGCAACCTTACACGAACT 59.932 47.619 0.00 0.00 0.00 3.01
1274 1314 0.110823 GCAACGAGCAACCTTACACG 60.111 55.000 0.00 0.00 44.79 4.49
1288 1328 0.039798 ATCAGCACAGCAAAGCAACG 60.040 50.000 0.00 0.00 0.00 4.10
1302 1358 2.201921 ATGATCCATCCAGCATCAGC 57.798 50.000 0.00 0.00 42.56 4.26
1341 1399 2.820197 GTTTCAAGGCCCTAAAGTGGAG 59.180 50.000 0.00 0.00 0.00 3.86
1392 1458 2.363680 CAGGCATCTAACGAGGATGAGT 59.636 50.000 16.41 4.51 42.02 3.41
1401 1467 2.099921 AGCTAGTCACAGGCATCTAACG 59.900 50.000 0.00 0.00 0.00 3.18
1441 1507 1.341852 TCTAGCAACAAGTGTACCGCA 59.658 47.619 0.00 0.00 0.00 5.69
1442 1508 2.074547 TCTAGCAACAAGTGTACCGC 57.925 50.000 0.00 0.00 0.00 5.68
1443 1509 3.585862 ACATCTAGCAACAAGTGTACCG 58.414 45.455 0.00 0.00 0.00 4.02
1444 1510 5.238650 ACAAACATCTAGCAACAAGTGTACC 59.761 40.000 0.00 0.00 0.00 3.34
1484 1554 4.164822 ACCTCGAACAAAGCATGAATTG 57.835 40.909 0.00 2.91 0.00 2.32
1548 1634 2.449464 CAGGCCATGAAACAATCAGGA 58.551 47.619 5.01 0.00 42.41 3.86
1569 1659 4.574828 CCAAGATCTAATACAACAACCCCG 59.425 45.833 0.00 0.00 0.00 5.73
1572 1662 7.054124 TCCATCCAAGATCTAATACAACAACC 58.946 38.462 0.00 0.00 0.00 3.77
1596 1694 1.336125 GATGCAACTGCCCTAATGCTC 59.664 52.381 0.00 0.00 41.18 4.26
1619 1717 1.089920 ATTGCAATCACTCGACCTGC 58.910 50.000 5.99 0.00 35.04 4.85
1626 1724 6.346359 GCAACTGAGAAAAATTGCAATCACTC 60.346 38.462 13.38 17.15 45.38 3.51
1635 1741 6.651755 AACACAAGCAACTGAGAAAAATTG 57.348 33.333 0.00 0.00 0.00 2.32
1638 1744 7.771183 AGATTAACACAAGCAACTGAGAAAAA 58.229 30.769 0.00 0.00 0.00 1.94
1659 1765 6.919775 ATACCTACTTATCGAGGCAAGATT 57.080 37.500 10.25 0.00 36.17 2.40
1739 1845 0.744057 TGACAGCCACACACACACAG 60.744 55.000 0.00 0.00 0.00 3.66
1801 2103 9.082313 ACAAGAACACATTCAGATAAAAGGATT 57.918 29.630 0.00 0.00 37.29 3.01
1810 2112 4.139786 AGCACACAAGAACACATTCAGAT 58.860 39.130 0.00 0.00 37.29 2.90
1814 2116 4.032703 ACAAGCACACAAGAACACATTC 57.967 40.909 0.00 0.00 34.78 2.67
1816 2133 3.696051 AGAACAAGCACACAAGAACACAT 59.304 39.130 0.00 0.00 0.00 3.21
1818 2135 3.764885 AGAACAAGCACACAAGAACAC 57.235 42.857 0.00 0.00 0.00 3.32
1820 2137 4.355543 TCAAGAACAAGCACACAAGAAC 57.644 40.909 0.00 0.00 0.00 3.01
2129 2448 6.561614 TCATAAGAACTTAGCAGTACCTTCG 58.438 40.000 0.00 0.00 31.85 3.79
2161 2480 5.555017 ACAGTACAAGATTGCAGAATGACT 58.445 37.500 0.00 0.00 39.69 3.41
2162 2481 5.869753 ACAGTACAAGATTGCAGAATGAC 57.130 39.130 0.00 0.00 39.69 3.06
2163 2482 5.764686 ACAACAGTACAAGATTGCAGAATGA 59.235 36.000 0.00 0.00 39.69 2.57
2164 2483 6.005583 ACAACAGTACAAGATTGCAGAATG 57.994 37.500 0.00 0.00 40.87 2.67
2167 2486 4.881273 ACAACAACAGTACAAGATTGCAGA 59.119 37.500 0.00 0.00 0.00 4.26
2168 2487 5.173774 ACAACAACAGTACAAGATTGCAG 57.826 39.130 0.00 0.00 0.00 4.41
2169 2488 5.574891 AACAACAACAGTACAAGATTGCA 57.425 34.783 0.00 0.00 0.00 4.08
2170 2489 7.979115 TTAAACAACAACAGTACAAGATTGC 57.021 32.000 0.00 0.00 0.00 3.56
2173 2492 9.840427 GCATATTAAACAACAACAGTACAAGAT 57.160 29.630 0.00 0.00 0.00 2.40
2174 2493 8.293867 GGCATATTAAACAACAACAGTACAAGA 58.706 33.333 0.00 0.00 0.00 3.02
2175 2494 8.296713 AGGCATATTAAACAACAACAGTACAAG 58.703 33.333 0.00 0.00 0.00 3.16
2176 2495 8.172352 AGGCATATTAAACAACAACAGTACAA 57.828 30.769 0.00 0.00 0.00 2.41
2185 2504 9.853555 CAAATTCACTAGGCATATTAAACAACA 57.146 29.630 0.00 0.00 0.00 3.33
2189 2508 8.190784 ACAGCAAATTCACTAGGCATATTAAAC 58.809 33.333 0.00 0.00 0.00 2.01
2196 2515 5.195940 ACATACAGCAAATTCACTAGGCAT 58.804 37.500 0.00 0.00 0.00 4.40
2207 2526 7.996098 ACTAACAGGTTAACATACAGCAAAT 57.004 32.000 8.10 0.00 0.00 2.32
2216 2535 4.465886 TGTGGCAACTAACAGGTTAACAT 58.534 39.130 8.10 0.00 37.61 2.71
2249 2568 5.930837 TTTGTTCATTCAAGTGGTTTCCT 57.069 34.783 0.00 0.00 0.00 3.36
2250 2569 6.279882 TCATTTGTTCATTCAAGTGGTTTCC 58.720 36.000 0.00 0.00 36.28 3.13
2265 2584 8.570488 TGCAGATATTCCATACATCATTTGTTC 58.430 33.333 0.00 0.00 39.87 3.18
2267 2586 8.467963 TTGCAGATATTCCATACATCATTTGT 57.532 30.769 0.00 0.00 42.62 2.83
2268 2587 9.752961 TTTTGCAGATATTCCATACATCATTTG 57.247 29.630 0.00 0.00 0.00 2.32
2300 2620 1.550524 TCTCTAGCAAGGACACGCAAT 59.449 47.619 0.00 0.00 0.00 3.56
2305 2625 2.563179 TCAACCTCTCTAGCAAGGACAC 59.437 50.000 15.00 0.00 36.46 3.67
2309 2629 3.007398 ACAACTCAACCTCTCTAGCAAGG 59.993 47.826 8.30 8.30 38.70 3.61
2313 2633 2.300437 ACCACAACTCAACCTCTCTAGC 59.700 50.000 0.00 0.00 0.00 3.42
2321 2641 4.712122 TCTTTCAAACCACAACTCAACC 57.288 40.909 0.00 0.00 0.00 3.77
2322 2642 7.595311 ATTTTCTTTCAAACCACAACTCAAC 57.405 32.000 0.00 0.00 0.00 3.18
2330 2650 9.597999 GATGCATTAAATTTTCTTTCAAACCAC 57.402 29.630 0.00 0.00 0.00 4.16
2352 2672 4.883585 TCCCATAGAATGTGTGAAAGATGC 59.116 41.667 0.00 0.00 0.00 3.91
2357 2677 5.263599 AGCAATCCCATAGAATGTGTGAAA 58.736 37.500 0.00 0.00 0.00 2.69
2359 2679 4.080413 TGAGCAATCCCATAGAATGTGTGA 60.080 41.667 0.00 0.00 0.00 3.58
2400 2762 4.025360 TCTTCTGGCCAATTTGCATATGT 58.975 39.130 7.01 0.00 0.00 2.29
2401 2763 4.659111 TCTTCTGGCCAATTTGCATATG 57.341 40.909 7.01 0.00 0.00 1.78
2402 2764 4.467082 TGTTCTTCTGGCCAATTTGCATAT 59.533 37.500 7.01 0.00 0.00 1.78
2403 2765 3.831333 TGTTCTTCTGGCCAATTTGCATA 59.169 39.130 7.01 0.00 0.00 3.14
2459 2835 3.840594 CATGCAATGTGCCCGGGG 61.841 66.667 25.28 9.31 44.23 5.73
2470 2846 5.068855 TCACATGAAAGAGGAAAACATGCAA 59.931 36.000 0.00 0.00 40.99 4.08
2471 2847 4.583907 TCACATGAAAGAGGAAAACATGCA 59.416 37.500 0.00 0.00 40.99 3.96
2472 2848 5.048504 TCTCACATGAAAGAGGAAAACATGC 60.049 40.000 0.00 0.00 40.99 4.06
2473 2849 6.564709 TCTCACATGAAAGAGGAAAACATG 57.435 37.500 0.00 0.00 42.37 3.21
2474 2850 7.771927 ATTCTCACATGAAAGAGGAAAACAT 57.228 32.000 0.00 0.00 32.76 2.71
2476 2852 6.364435 GCAATTCTCACATGAAAGAGGAAAAC 59.636 38.462 0.00 0.00 32.76 2.43
2483 2929 7.164122 AGACTAAGCAATTCTCACATGAAAGA 58.836 34.615 0.00 0.00 0.00 2.52
2501 2947 6.670233 AGTCTCAGACAACGTTAAGACTAAG 58.330 40.000 19.32 5.30 41.11 2.18
2523 2969 4.077300 TCAGAATGCAGACACAGAAAGT 57.923 40.909 0.00 0.00 34.76 2.66
2685 3160 6.589135 ACAGAATCAGCAAGTGATATGATCA 58.411 36.000 0.00 0.00 45.89 2.92
2686 3161 7.871973 AGTACAGAATCAGCAAGTGATATGATC 59.128 37.037 0.00 0.00 45.89 2.92
2700 3175 6.492007 ACATGCAGAAAAGTACAGAATCAG 57.508 37.500 0.00 0.00 0.00 2.90
2702 3177 5.570589 GCAACATGCAGAAAAGTACAGAATC 59.429 40.000 0.00 0.00 44.26 2.52
2703 3178 5.464168 GCAACATGCAGAAAAGTACAGAAT 58.536 37.500 0.00 0.00 44.26 2.40
2704 3179 4.858935 GCAACATGCAGAAAAGTACAGAA 58.141 39.130 0.00 0.00 44.26 3.02
2732 3208 4.376340 ACTTTCAAGTTTCAACTGCCTG 57.624 40.909 0.00 0.00 39.66 4.85
2733 3209 5.417580 TGTTACTTTCAAGTTTCAACTGCCT 59.582 36.000 0.00 0.00 39.66 4.75
2734 3210 5.646606 TGTTACTTTCAAGTTTCAACTGCC 58.353 37.500 0.00 0.00 39.66 4.85
2735 3211 7.305418 CGATTGTTACTTTCAAGTTTCAACTGC 60.305 37.037 0.00 0.00 39.66 4.40
2736 3212 7.696453 ACGATTGTTACTTTCAAGTTTCAACTG 59.304 33.333 0.00 3.92 39.66 3.16
2737 3213 7.758495 ACGATTGTTACTTTCAAGTTTCAACT 58.242 30.769 0.00 0.00 42.04 3.16
2738 3214 7.964545 ACGATTGTTACTTTCAAGTTTCAAC 57.035 32.000 0.00 0.00 40.37 3.18
2740 3216 7.753659 TCAACGATTGTTACTTTCAAGTTTCA 58.246 30.769 0.00 0.00 40.37 2.69
2741 3217 8.521059 GTTCAACGATTGTTACTTTCAAGTTTC 58.479 33.333 0.00 0.00 40.37 2.78
2742 3218 7.486870 GGTTCAACGATTGTTACTTTCAAGTTT 59.513 33.333 0.00 0.00 40.37 2.66
2744 3220 6.317893 AGGTTCAACGATTGTTACTTTCAAGT 59.682 34.615 0.00 0.00 42.91 3.16
2745 3221 6.632834 CAGGTTCAACGATTGTTACTTTCAAG 59.367 38.462 0.00 0.00 36.28 3.02
2761 3240 6.164176 ACAGCTTGTATACTACAGGTTCAAC 58.836 40.000 4.17 0.00 40.24 3.18
2792 3271 9.844257 ATCTGCTTTAGTTAGCTAATCTTTGAT 57.156 29.630 9.88 4.37 41.76 2.57
2821 3302 4.756084 AAAGAGTGTTGATAGCTTGTGC 57.244 40.909 0.00 0.00 40.05 4.57
2822 3303 5.409520 TGCTAAAGAGTGTTGATAGCTTGTG 59.590 40.000 0.00 0.00 39.67 3.33
2835 3316 4.409570 GCAATGACATGTGCTAAAGAGTG 58.590 43.478 1.15 0.00 37.78 3.51
2844 3325 0.108992 CCACCAGCAATGACATGTGC 60.109 55.000 1.15 0.00 41.22 4.57
2845 3326 1.536940 TCCACCAGCAATGACATGTG 58.463 50.000 1.15 0.00 0.00 3.21
2846 3327 1.888512 GTTCCACCAGCAATGACATGT 59.111 47.619 0.00 0.00 0.00 3.21
2875 3371 5.238214 GCAGGATAGAAGAATGTGTCAATCC 59.762 44.000 0.00 0.00 33.36 3.01
2882 3378 4.148128 ACCTGCAGGATAGAAGAATGTG 57.852 45.455 39.19 7.55 38.94 3.21
3039 3536 4.929146 AGGGCCACAAGTAAACTAGAAT 57.071 40.909 6.18 0.00 0.00 2.40
3114 3614 6.463995 AACCACAGTGCAAAATCTTAAGAA 57.536 33.333 9.71 0.00 0.00 2.52
3115 3615 6.272318 CAAACCACAGTGCAAAATCTTAAGA 58.728 36.000 7.82 7.82 0.00 2.10
3116 3616 5.463061 CCAAACCACAGTGCAAAATCTTAAG 59.537 40.000 0.00 0.00 0.00 1.85
3161 3661 4.279169 CCAAAAGCTCTTTCAGGTTCATCA 59.721 41.667 0.00 0.00 42.26 3.07
3162 3662 4.279420 ACCAAAAGCTCTTTCAGGTTCATC 59.721 41.667 11.36 0.00 42.26 2.92
3163 3663 4.218312 ACCAAAAGCTCTTTCAGGTTCAT 58.782 39.130 11.36 0.00 42.26 2.57
3184 3684 4.816925 GGCCACAACAGAGATAAATAGGAC 59.183 45.833 0.00 0.00 0.00 3.85
3187 3687 5.431765 AGTGGCCACAACAGAGATAAATAG 58.568 41.667 36.39 0.00 0.00 1.73
3188 3688 5.435686 AGTGGCCACAACAGAGATAAATA 57.564 39.130 36.39 0.00 0.00 1.40
3223 3723 0.610232 AGCAACATCCAAGCCAGACC 60.610 55.000 0.00 0.00 0.00 3.85
3240 3740 4.611581 GCACACTTAGCAACAGACTAAAGC 60.612 45.833 0.00 0.00 0.00 3.51
3241 3741 4.752101 AGCACACTTAGCAACAGACTAAAG 59.248 41.667 0.00 0.00 0.00 1.85
3242 3742 4.703897 AGCACACTTAGCAACAGACTAAA 58.296 39.130 0.00 0.00 0.00 1.85
3263 3763 2.159653 GCAACCGTTCATCACAAGCTAG 60.160 50.000 0.00 0.00 0.00 3.42
3264 3764 1.804151 GCAACCGTTCATCACAAGCTA 59.196 47.619 0.00 0.00 0.00 3.32
3279 3779 3.986442 AAAAATGGCAAACATGCAACC 57.014 38.095 2.97 0.00 40.44 3.77
3363 4091 2.443255 ACCAAACATTCTCCAGACCTGT 59.557 45.455 0.00 0.00 0.00 4.00
3367 4095 3.425162 AGGACCAAACATTCTCCAGAC 57.575 47.619 0.00 0.00 0.00 3.51
3415 4143 7.210873 TCAAGCCACGGTAAAATAACAAAAAT 58.789 30.769 0.00 0.00 0.00 1.82
3476 4204 6.263842 AGTTTCTGCATTTTGAACAGATGAGA 59.736 34.615 0.00 0.00 39.99 3.27
3481 4215 9.598517 AAAAATAGTTTCTGCATTTTGAACAGA 57.401 25.926 0.00 0.00 38.62 3.41
3504 4238 5.290386 CAAAGTACCATTTACGCCCAAAAA 58.710 37.500 0.00 0.00 0.00 1.94
3509 4243 2.089201 AGCAAAGTACCATTTACGCCC 58.911 47.619 0.00 0.00 0.00 6.13
3510 4244 3.842732 AAGCAAAGTACCATTTACGCC 57.157 42.857 0.00 0.00 0.00 5.68
3512 4246 7.241376 CCTAGAAAAGCAAAGTACCATTTACG 58.759 38.462 0.00 0.00 0.00 3.18
3514 4248 6.152154 GGCCTAGAAAAGCAAAGTACCATTTA 59.848 38.462 0.00 0.00 0.00 1.40
3518 4252 3.181438 TGGCCTAGAAAAGCAAAGTACCA 60.181 43.478 3.32 0.00 0.00 3.25
3522 4256 3.566351 ACTTGGCCTAGAAAAGCAAAGT 58.434 40.909 21.63 6.58 46.18 2.66
3562 4296 2.486013 CGATTTCATGATGCCTCCCTGA 60.486 50.000 0.00 0.00 0.00 3.86
3563 4297 1.878088 CGATTTCATGATGCCTCCCTG 59.122 52.381 0.00 0.00 0.00 4.45
3564 4298 1.492176 ACGATTTCATGATGCCTCCCT 59.508 47.619 0.00 0.00 0.00 4.20
3565 4299 1.605710 CACGATTTCATGATGCCTCCC 59.394 52.381 0.00 0.00 0.00 4.30
3567 4301 1.945394 AGCACGATTTCATGATGCCTC 59.055 47.619 13.31 0.63 36.96 4.70
3569 4303 1.945394 AGAGCACGATTTCATGATGCC 59.055 47.619 13.31 6.61 36.96 4.40
3570 4304 2.353889 ACAGAGCACGATTTCATGATGC 59.646 45.455 9.72 9.72 36.52 3.91
3571 4305 5.107182 GGATACAGAGCACGATTTCATGATG 60.107 44.000 0.00 0.00 0.00 3.07
3573 4307 4.371786 GGATACAGAGCACGATTTCATGA 58.628 43.478 0.00 0.00 0.00 3.07
3574 4308 3.496130 GGGATACAGAGCACGATTTCATG 59.504 47.826 0.00 0.00 39.74 3.07
3577 4311 3.179443 TGGGATACAGAGCACGATTTC 57.821 47.619 0.00 0.00 39.74 2.17
3579 4313 3.627395 TTTGGGATACAGAGCACGATT 57.373 42.857 0.00 0.00 39.74 3.34
3580 4314 3.627395 TTTTGGGATACAGAGCACGAT 57.373 42.857 0.00 0.00 39.74 3.73
3605 4344 3.650281 TGTGCCTTCCATGTATGTCAT 57.350 42.857 0.00 0.00 37.22 3.06
3606 4345 3.431673 TTGTGCCTTCCATGTATGTCA 57.568 42.857 0.00 0.00 0.00 3.58
3607 4346 3.505680 TGTTTGTGCCTTCCATGTATGTC 59.494 43.478 0.00 0.00 0.00 3.06
3608 4347 3.495331 TGTTTGTGCCTTCCATGTATGT 58.505 40.909 0.00 0.00 0.00 2.29
3609 4348 3.674138 GCTGTTTGTGCCTTCCATGTATG 60.674 47.826 0.00 0.00 0.00 2.39
3610 4349 2.493278 GCTGTTTGTGCCTTCCATGTAT 59.507 45.455 0.00 0.00 0.00 2.29
3611 4350 1.885887 GCTGTTTGTGCCTTCCATGTA 59.114 47.619 0.00 0.00 0.00 2.29
3612 4351 0.675633 GCTGTTTGTGCCTTCCATGT 59.324 50.000 0.00 0.00 0.00 3.21
3613 4352 0.675083 TGCTGTTTGTGCCTTCCATG 59.325 50.000 0.00 0.00 0.00 3.66
3614 4353 1.069049 GTTGCTGTTTGTGCCTTCCAT 59.931 47.619 0.00 0.00 0.00 3.41
3616 4355 0.746659 AGTTGCTGTTTGTGCCTTCC 59.253 50.000 0.00 0.00 0.00 3.46
3647 4386 3.119814 TCGCCGCTAAATTTGCAAACATA 60.120 39.130 15.41 9.58 0.00 2.29
3649 4388 1.001268 TCGCCGCTAAATTTGCAAACA 60.001 42.857 15.41 1.82 0.00 2.83
3650 4389 1.648681 CTCGCCGCTAAATTTGCAAAC 59.351 47.619 15.41 0.00 0.00 2.93
3651 4390 1.975837 CTCGCCGCTAAATTTGCAAA 58.024 45.000 15.44 15.44 0.00 3.68
3652 4391 0.455972 GCTCGCCGCTAAATTTGCAA 60.456 50.000 0.00 0.00 35.14 4.08
3653 4392 1.136565 GCTCGCCGCTAAATTTGCA 59.863 52.632 0.00 0.00 35.14 4.08
3654 4393 0.863119 CTGCTCGCCGCTAAATTTGC 60.863 55.000 0.00 1.91 40.11 3.68
3655 4394 0.726827 TCTGCTCGCCGCTAAATTTG 59.273 50.000 0.00 0.00 40.11 2.32
3658 4397 1.521681 GGTCTGCTCGCCGCTAAAT 60.522 57.895 0.00 0.00 40.11 1.40
3659 4398 2.125673 GGTCTGCTCGCCGCTAAA 60.126 61.111 0.00 0.00 40.11 1.85
3660 4399 2.238847 AATGGTCTGCTCGCCGCTAA 62.239 55.000 0.00 0.00 40.11 3.09
3661 4400 2.238847 AAATGGTCTGCTCGCCGCTA 62.239 55.000 0.00 0.00 40.11 4.26
3665 4404 2.084546 AGTTAAAATGGTCTGCTCGCC 58.915 47.619 0.00 0.00 0.00 5.54
3674 4413 9.995003 TGAAGATAAATTTGCAGTTAAAATGGT 57.005 25.926 0.00 0.00 0.00 3.55
3705 4444 4.984161 TCTGCTTCTTTATTTGCTGTTTGC 59.016 37.500 0.00 0.00 43.25 3.68
3707 4446 8.115490 ACTATCTGCTTCTTTATTTGCTGTTT 57.885 30.769 0.00 0.00 0.00 2.83
3711 4450 8.401709 GCTAAACTATCTGCTTCTTTATTTGCT 58.598 33.333 0.00 0.00 0.00 3.91
3747 4494 0.327924 ATGTGCCCGGATTCAAGACA 59.672 50.000 0.73 0.00 0.00 3.41
3756 4503 1.191489 TGAGTTCAGATGTGCCCGGA 61.191 55.000 0.73 0.00 0.00 5.14
3823 4571 7.148641 ACATGTATGCACGGAAATTTGTTTTA 58.851 30.769 0.00 0.00 0.00 1.52
3832 4580 4.068599 TCTCAAACATGTATGCACGGAAA 58.931 39.130 0.00 0.00 0.00 3.13
3838 4586 3.622612 CGGACATCTCAAACATGTATGCA 59.377 43.478 0.00 0.00 34.49 3.96
3852 4600 0.322816 AAAGGTGCATGCGGACATCT 60.323 50.000 14.09 0.00 34.61 2.90
3853 4601 0.527565 AAAAGGTGCATGCGGACATC 59.472 50.000 14.09 0.00 34.61 3.06
3854 4602 0.527565 GAAAAGGTGCATGCGGACAT 59.472 50.000 14.09 0.66 34.61 3.06
3855 4603 1.523154 GGAAAAGGTGCATGCGGACA 61.523 55.000 14.09 0.00 34.61 4.02
3856 4604 1.212751 GGAAAAGGTGCATGCGGAC 59.787 57.895 14.09 6.40 0.00 4.79
3857 4605 1.976474 GGGAAAAGGTGCATGCGGA 60.976 57.895 14.09 0.00 0.00 5.54
3858 4606 2.216750 CTGGGAAAAGGTGCATGCGG 62.217 60.000 14.09 0.00 0.00 5.69
3859 4607 1.213537 CTGGGAAAAGGTGCATGCG 59.786 57.895 14.09 0.00 0.00 4.73
3860 4608 0.681175 AACTGGGAAAAGGTGCATGC 59.319 50.000 11.82 11.82 0.00 4.06
3861 4609 3.473923 AAAACTGGGAAAAGGTGCATG 57.526 42.857 0.00 0.00 0.00 4.06
3894 4642 4.754322 ACACACCTTGGAAAACACATTTC 58.246 39.130 0.00 0.00 45.55 2.17
3895 4643 4.817318 ACACACCTTGGAAAACACATTT 57.183 36.364 0.00 0.00 0.00 2.32
3896 4644 4.817318 AACACACCTTGGAAAACACATT 57.183 36.364 0.00 0.00 0.00 2.71
3897 4645 5.923733 TTAACACACCTTGGAAAACACAT 57.076 34.783 0.00 0.00 0.00 3.21
3898 4646 5.923733 ATTAACACACCTTGGAAAACACA 57.076 34.783 0.00 0.00 0.00 3.72
3899 4647 7.882179 AGATATTAACACACCTTGGAAAACAC 58.118 34.615 0.00 0.00 0.00 3.32
3900 4648 9.226606 CTAGATATTAACACACCTTGGAAAACA 57.773 33.333 0.00 0.00 0.00 2.83
3901 4649 9.227777 ACTAGATATTAACACACCTTGGAAAAC 57.772 33.333 0.00 0.00 0.00 2.43
3902 4650 9.802039 AACTAGATATTAACACACCTTGGAAAA 57.198 29.630 0.00 0.00 0.00 2.29
3903 4651 9.226606 CAACTAGATATTAACACACCTTGGAAA 57.773 33.333 0.00 0.00 0.00 3.13
3904 4652 7.827236 CCAACTAGATATTAACACACCTTGGAA 59.173 37.037 0.00 0.00 0.00 3.53
3905 4653 7.335627 CCAACTAGATATTAACACACCTTGGA 58.664 38.462 0.00 0.00 0.00 3.53
3906 4654 6.542370 CCCAACTAGATATTAACACACCTTGG 59.458 42.308 0.00 0.00 0.00 3.61
3907 4655 7.110155 ACCCAACTAGATATTAACACACCTTG 58.890 38.462 0.00 0.00 0.00 3.61
3908 4656 7.266905 ACCCAACTAGATATTAACACACCTT 57.733 36.000 0.00 0.00 0.00 3.50
3909 4657 6.886178 ACCCAACTAGATATTAACACACCT 57.114 37.500 0.00 0.00 0.00 4.00
3910 4658 7.107542 TGAACCCAACTAGATATTAACACACC 58.892 38.462 0.00 0.00 0.00 4.16
3911 4659 8.732746 ATGAACCCAACTAGATATTAACACAC 57.267 34.615 0.00 0.00 0.00 3.82
3912 4660 7.990886 GGATGAACCCAACTAGATATTAACACA 59.009 37.037 0.00 0.00 0.00 3.72
3913 4661 7.990886 TGGATGAACCCAACTAGATATTAACAC 59.009 37.037 0.00 0.00 38.00 3.32
3914 4662 8.096621 TGGATGAACCCAACTAGATATTAACA 57.903 34.615 0.00 0.00 38.00 2.41
3915 4663 9.003658 CATGGATGAACCCAACTAGATATTAAC 57.996 37.037 0.00 0.00 40.04 2.01
3916 4664 7.665559 GCATGGATGAACCCAACTAGATATTAA 59.334 37.037 0.00 0.00 40.04 1.40
3917 4665 7.168219 GCATGGATGAACCCAACTAGATATTA 58.832 38.462 0.00 0.00 40.04 0.98
3918 4666 6.006449 GCATGGATGAACCCAACTAGATATT 58.994 40.000 0.00 0.00 40.04 1.28
3919 4667 5.073554 TGCATGGATGAACCCAACTAGATAT 59.926 40.000 0.00 0.00 40.04 1.63
3920 4668 4.411869 TGCATGGATGAACCCAACTAGATA 59.588 41.667 0.00 0.00 40.04 1.98
3921 4669 3.202818 TGCATGGATGAACCCAACTAGAT 59.797 43.478 0.00 0.00 40.04 1.98
3922 4670 2.575735 TGCATGGATGAACCCAACTAGA 59.424 45.455 0.00 0.00 40.04 2.43
3923 4671 2.684881 GTGCATGGATGAACCCAACTAG 59.315 50.000 0.00 0.00 40.04 2.57
3924 4672 2.308570 AGTGCATGGATGAACCCAACTA 59.691 45.455 0.00 0.00 40.04 2.24
3925 4673 1.076024 AGTGCATGGATGAACCCAACT 59.924 47.619 0.00 0.00 40.04 3.16
3926 4674 1.549203 AGTGCATGGATGAACCCAAC 58.451 50.000 0.00 0.00 40.04 3.77
3927 4675 2.170166 GAAGTGCATGGATGAACCCAA 58.830 47.619 0.00 0.00 40.04 4.12
3928 4676 1.355381 AGAAGTGCATGGATGAACCCA 59.645 47.619 0.00 0.00 37.01 4.51
3929 4677 2.134789 AGAAGTGCATGGATGAACCC 57.865 50.000 0.00 0.00 37.01 4.11
3930 4678 6.058183 ACTATTAGAAGTGCATGGATGAACC 58.942 40.000 0.00 0.00 37.01 3.62
3931 4679 7.559590 AACTATTAGAAGTGCATGGATGAAC 57.440 36.000 0.00 0.00 36.55 3.18
3932 4680 9.330063 CTAAACTATTAGAAGTGCATGGATGAA 57.670 33.333 0.00 0.00 40.90 2.57
3933 4681 7.442364 GCTAAACTATTAGAAGTGCATGGATGA 59.558 37.037 0.00 0.00 40.90 2.92
3934 4682 7.443575 AGCTAAACTATTAGAAGTGCATGGATG 59.556 37.037 0.00 0.00 40.90 3.51
3935 4683 7.512992 AGCTAAACTATTAGAAGTGCATGGAT 58.487 34.615 0.00 0.00 40.90 3.41
3936 4684 6.889198 AGCTAAACTATTAGAAGTGCATGGA 58.111 36.000 0.00 0.00 40.90 3.41
3937 4685 8.662781 TTAGCTAAACTATTAGAAGTGCATGG 57.337 34.615 2.97 0.00 40.90 3.66
3938 4686 9.319143 ACTTAGCTAAACTATTAGAAGTGCATG 57.681 33.333 7.74 0.00 40.90 4.06
3939 4687 9.892130 AACTTAGCTAAACTATTAGAAGTGCAT 57.108 29.630 7.74 0.00 40.90 3.96
3940 4688 9.720769 AAACTTAGCTAAACTATTAGAAGTGCA 57.279 29.630 7.74 0.00 40.90 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.