Multiple sequence alignment - TraesCS6B01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G423600 chr6B 100.000 4067 0 0 1 4067 693372854 693368788 0.000000e+00 7511.0
1 TraesCS6B01G423600 chr6B 97.379 3816 61 8 1 3807 712095423 712091638 0.000000e+00 6457.0
2 TraesCS6B01G423600 chr6B 94.757 267 11 3 3802 4067 14110602 14110338 2.930000e-111 412.0
3 TraesCS6B01G423600 chr1B 97.450 3804 91 3 4 3806 161274992 161278790 0.000000e+00 6482.0
4 TraesCS6B01G423600 chr1B 98.296 1643 27 1 2165 3806 161326749 161328391 0.000000e+00 2878.0
5 TraesCS6B01G423600 chr1B 94.737 266 13 1 3802 4067 4237064 4237328 2.930000e-111 412.0
6 TraesCS6B01G423600 chr7A 96.191 3807 104 12 1 3790 93136129 93139911 0.000000e+00 6189.0
7 TraesCS6B01G423600 chr1A 95.524 3820 148 9 1 3806 265439880 265443690 0.000000e+00 6085.0
8 TraesCS6B01G423600 chr1A 95.366 971 42 3 1178 2148 485239643 485240610 0.000000e+00 1541.0
9 TraesCS6B01G423600 chr1A 94.192 396 21 2 790 1185 485237765 485238158 1.620000e-168 603.0
10 TraesCS6B01G423600 chr1A 89.883 257 23 2 287 540 485237510 485237766 1.090000e-85 327.0
11 TraesCS6B01G423600 chr4B 97.722 834 19 0 1702 2535 136053524 136054357 0.000000e+00 1435.0
12 TraesCS6B01G423600 chr4B 95.828 767 28 2 788 1550 136052719 136053485 0.000000e+00 1236.0
13 TraesCS6B01G423600 chr4B 97.561 697 16 1 3111 3806 136054361 136055057 0.000000e+00 1192.0
14 TraesCS6B01G423600 chr4B 93.015 544 26 3 4 536 136052181 136052723 0.000000e+00 784.0
15 TraesCS6B01G423600 chr4B 84.193 601 85 8 3213 3808 507740063 507739468 3.530000e-160 575.0
16 TraesCS6B01G423600 chr4B 88.525 61 7 0 1975 2035 136053471 136053531 1.570000e-09 75.0
17 TraesCS6B01G423600 chr4D 86.341 593 74 6 3214 3803 470203751 470204339 1.230000e-179 640.0
18 TraesCS6B01G423600 chr3A 85.210 595 80 6 3214 3806 347580654 347581242 4.500000e-169 604.0
19 TraesCS6B01G423600 chr2D 81.481 621 102 11 2430 3045 32061069 32060457 7.850000e-137 497.0
20 TraesCS6B01G423600 chr2B 95.113 266 12 1 3802 4067 788449066 788449330 6.290000e-113 418.0
21 TraesCS6B01G423600 chr2B 94.737 266 13 1 3802 4067 682272188 682272452 2.930000e-111 412.0
22 TraesCS6B01G423600 chrUn 94.737 266 13 1 3802 4067 221022874 221023138 2.930000e-111 412.0
23 TraesCS6B01G423600 chr5D 94.757 267 11 3 3802 4067 198496675 198496939 2.930000e-111 412.0
24 TraesCS6B01G423600 chr3B 94.737 266 13 1 3802 4067 441598312 441598576 2.930000e-111 412.0
25 TraesCS6B01G423600 chr7B 94.717 265 13 1 3802 4066 369900663 369900926 1.050000e-110 411.0
26 TraesCS6B01G423600 chr6D 94.361 266 14 1 3802 4067 80050176 80049912 1.360000e-109 407.0
27 TraesCS6B01G423600 chr1D 97.222 36 1 0 998 1033 203433095 203433060 1.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G423600 chr6B 693368788 693372854 4066 True 7511.000000 7511 100.0000 1 4067 1 chr6B.!!$R2 4066
1 TraesCS6B01G423600 chr6B 712091638 712095423 3785 True 6457.000000 6457 97.3790 1 3807 1 chr6B.!!$R3 3806
2 TraesCS6B01G423600 chr1B 161274992 161278790 3798 False 6482.000000 6482 97.4500 4 3806 1 chr1B.!!$F2 3802
3 TraesCS6B01G423600 chr1B 161326749 161328391 1642 False 2878.000000 2878 98.2960 2165 3806 1 chr1B.!!$F3 1641
4 TraesCS6B01G423600 chr7A 93136129 93139911 3782 False 6189.000000 6189 96.1910 1 3790 1 chr7A.!!$F1 3789
5 TraesCS6B01G423600 chr1A 265439880 265443690 3810 False 6085.000000 6085 95.5240 1 3806 1 chr1A.!!$F1 3805
6 TraesCS6B01G423600 chr1A 485237510 485240610 3100 False 823.666667 1541 93.1470 287 2148 3 chr1A.!!$F2 1861
7 TraesCS6B01G423600 chr4B 136052181 136055057 2876 False 944.400000 1435 94.5302 4 3806 5 chr4B.!!$F1 3802
8 TraesCS6B01G423600 chr4B 507739468 507740063 595 True 575.000000 575 84.1930 3213 3808 1 chr4B.!!$R1 595
9 TraesCS6B01G423600 chr4D 470203751 470204339 588 False 640.000000 640 86.3410 3214 3803 1 chr4D.!!$F1 589
10 TraesCS6B01G423600 chr3A 347580654 347581242 588 False 604.000000 604 85.2100 3214 3806 1 chr3A.!!$F1 592
11 TraesCS6B01G423600 chr2D 32060457 32061069 612 True 497.000000 497 81.4810 2430 3045 1 chr2D.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 580 2.308722 ATGACCATGCCTCCCCGTT 61.309 57.895 0.0 0.0 0.00 4.44 F
1885 3402 0.537143 TTCCAATGACGTGGCTGCTT 60.537 50.000 0.0 0.0 38.68 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 3569 2.666272 TGTAGAGCCGAGATGGAGAT 57.334 50.0 0.0 0.0 42.0 2.75 R
3838 5363 0.029567 CGCTAAGCACTACGGAGGAG 59.970 60.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 171 6.204882 CCTTCGTTTTACTGTCTTTCTTCCAT 59.795 38.462 0.00 0.00 0.00 3.41
392 406 6.992063 AAAATACTGTTGGATAGAGTGCAG 57.008 37.500 0.00 0.00 31.84 4.41
415 429 3.447586 GTGATTCAGAGTACTGTAGGCCA 59.552 47.826 5.01 0.00 43.81 5.36
558 580 2.308722 ATGACCATGCCTCCCCGTT 61.309 57.895 0.00 0.00 0.00 4.44
830 852 8.833231 ATTTAGATGTTCTTCTCGTTTTCTGA 57.167 30.769 0.00 0.00 0.00 3.27
1026 1048 8.918202 TGAACAACCTTATCACTGATACTTTT 57.082 30.769 0.00 0.00 0.00 2.27
1050 1072 7.915293 TCACCTTAATGTTCGTTCACATATT 57.085 32.000 0.00 0.00 36.30 1.28
1170 1192 3.999663 GGAAGAGGAAACACTCTGATGTG 59.000 47.826 0.00 5.93 46.70 3.21
1519 3035 3.058016 CGAGCATTTCTGGTTCAATGTGT 60.058 43.478 0.00 0.00 33.58 3.72
1885 3402 0.537143 TTCCAATGACGTGGCTGCTT 60.537 50.000 0.00 0.00 38.68 3.91
1913 3430 3.826157 CTGATGTCCAAGTTTAAGGCCAA 59.174 43.478 5.01 0.00 0.00 4.52
1985 3502 9.764363 TGCTCATATACTCAACCTTTTAGTATG 57.236 33.333 0.00 0.00 37.11 2.39
2052 3569 8.691797 AGGCAAACTGTTAAGTATTTGAAGAAA 58.308 29.630 8.66 0.00 34.77 2.52
2191 3708 5.596845 AGCGTGCCTTTTCTTTCAAAAATA 58.403 33.333 0.00 0.00 0.00 1.40
2245 3762 6.613153 ATTATAAGTGGGAGCCATCTAGTC 57.387 41.667 0.00 0.00 35.28 2.59
2380 3897 5.560722 TGTGAATGTTAAGAAGGTCCTCA 57.439 39.130 0.00 0.00 0.00 3.86
2625 4142 9.371136 GAGTTGTATGAACATTATGAGAGTGAA 57.629 33.333 0.00 0.00 34.97 3.18
3003 4523 4.764823 CCAAATACTGTTGAGGCTTTGGTA 59.235 41.667 0.00 0.00 38.66 3.25
3827 5352 4.421554 CAGCCCCTCCCTCCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
3828 5353 3.626596 AGCCCCTCCCTCCTCCAA 61.627 66.667 0.00 0.00 0.00 3.53
3829 5354 3.412408 GCCCCTCCCTCCTCCAAC 61.412 72.222 0.00 0.00 0.00 3.77
3830 5355 2.124996 CCCCTCCCTCCTCCAACA 59.875 66.667 0.00 0.00 0.00 3.33
3831 5356 2.301738 CCCCTCCCTCCTCCAACAC 61.302 68.421 0.00 0.00 0.00 3.32
3832 5357 1.229658 CCCTCCCTCCTCCAACACT 60.230 63.158 0.00 0.00 0.00 3.55
3833 5358 0.842467 CCCTCCCTCCTCCAACACTT 60.842 60.000 0.00 0.00 0.00 3.16
3834 5359 0.615850 CCTCCCTCCTCCAACACTTC 59.384 60.000 0.00 0.00 0.00 3.01
3835 5360 0.615850 CTCCCTCCTCCAACACTTCC 59.384 60.000 0.00 0.00 0.00 3.46
3836 5361 0.193574 TCCCTCCTCCAACACTTCCT 59.806 55.000 0.00 0.00 0.00 3.36
3837 5362 0.615850 CCCTCCTCCAACACTTCCTC 59.384 60.000 0.00 0.00 0.00 3.71
3838 5363 0.615850 CCTCCTCCAACACTTCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
3839 5364 1.650528 CTCCTCCAACACTTCCTCCT 58.349 55.000 0.00 0.00 0.00 3.69
3840 5365 1.552792 CTCCTCCAACACTTCCTCCTC 59.447 57.143 0.00 0.00 0.00 3.71
3841 5366 0.615850 CCTCCAACACTTCCTCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
3842 5367 1.650528 CTCCAACACTTCCTCCTCCT 58.349 55.000 0.00 0.00 0.00 3.69
3843 5368 1.552792 CTCCAACACTTCCTCCTCCTC 59.447 57.143 0.00 0.00 0.00 3.71
3844 5369 0.615850 CCAACACTTCCTCCTCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
3845 5370 0.247736 CAACACTTCCTCCTCCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
3846 5371 0.178929 AACACTTCCTCCTCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
3847 5372 0.702902 ACACTTCCTCCTCCTCCGTA 59.297 55.000 0.00 0.00 0.00 4.02
3848 5373 1.341187 ACACTTCCTCCTCCTCCGTAG 60.341 57.143 0.00 0.00 0.00 3.51
3849 5374 1.001282 ACTTCCTCCTCCTCCGTAGT 58.999 55.000 0.00 0.00 0.00 2.73
3850 5375 1.341187 ACTTCCTCCTCCTCCGTAGTG 60.341 57.143 0.00 0.00 0.00 2.74
3851 5376 0.683504 TTCCTCCTCCTCCGTAGTGC 60.684 60.000 0.00 0.00 0.00 4.40
3852 5377 1.076632 CCTCCTCCTCCGTAGTGCT 60.077 63.158 0.00 0.00 0.00 4.40
3853 5378 0.684805 CCTCCTCCTCCGTAGTGCTT 60.685 60.000 0.00 0.00 0.00 3.91
3854 5379 1.409802 CCTCCTCCTCCGTAGTGCTTA 60.410 57.143 0.00 0.00 0.00 3.09
3855 5380 1.950909 CTCCTCCTCCGTAGTGCTTAG 59.049 57.143 0.00 0.00 0.00 2.18
3856 5381 0.386113 CCTCCTCCGTAGTGCTTAGC 59.614 60.000 0.00 0.00 0.00 3.09
3857 5382 0.029567 CTCCTCCGTAGTGCTTAGCG 59.970 60.000 0.00 0.00 0.00 4.26
3858 5383 0.393402 TCCTCCGTAGTGCTTAGCGA 60.393 55.000 0.00 0.00 0.00 4.93
3859 5384 0.454600 CCTCCGTAGTGCTTAGCGAA 59.545 55.000 0.00 0.00 0.00 4.70
3860 5385 1.534175 CCTCCGTAGTGCTTAGCGAAG 60.534 57.143 1.67 1.67 35.60 3.79
3873 5398 2.573869 CGAAGCTCTGCCGGAGAA 59.426 61.111 5.05 0.00 44.45 2.87
3874 5399 1.807573 CGAAGCTCTGCCGGAGAAC 60.808 63.158 5.05 0.48 44.45 3.01
3875 5400 1.448717 GAAGCTCTGCCGGAGAACC 60.449 63.158 5.05 0.00 44.45 3.62
3876 5401 2.172483 GAAGCTCTGCCGGAGAACCA 62.172 60.000 5.05 0.00 44.45 3.67
3877 5402 2.435059 GCTCTGCCGGAGAACCAC 60.435 66.667 5.05 0.00 44.45 4.16
3878 5403 2.125912 CTCTGCCGGAGAACCACG 60.126 66.667 5.05 0.00 44.45 4.94
3879 5404 2.599281 TCTGCCGGAGAACCACGA 60.599 61.111 5.05 0.00 35.59 4.35
3880 5405 2.125912 CTGCCGGAGAACCACGAG 60.126 66.667 5.05 0.00 35.59 4.18
3881 5406 4.373116 TGCCGGAGAACCACGAGC 62.373 66.667 5.05 0.00 35.59 5.03
3882 5407 4.070552 GCCGGAGAACCACGAGCT 62.071 66.667 5.05 0.00 35.59 4.09
3883 5408 2.182030 CCGGAGAACCACGAGCTC 59.818 66.667 2.73 2.73 35.59 4.09
3884 5409 2.182030 CGGAGAACCACGAGCTCC 59.818 66.667 8.47 0.00 43.73 4.70
3885 5410 2.636412 CGGAGAACCACGAGCTCCA 61.636 63.158 8.47 0.00 46.74 3.86
3886 5411 1.901085 GGAGAACCACGAGCTCCAT 59.099 57.895 8.47 0.00 45.89 3.41
3887 5412 0.179097 GGAGAACCACGAGCTCCATC 60.179 60.000 8.47 0.00 45.89 3.51
3888 5413 0.532573 GAGAACCACGAGCTCCATCA 59.467 55.000 8.47 0.00 0.00 3.07
3889 5414 0.247736 AGAACCACGAGCTCCATCAC 59.752 55.000 8.47 0.00 0.00 3.06
3890 5415 0.741221 GAACCACGAGCTCCATCACC 60.741 60.000 8.47 0.00 0.00 4.02
3891 5416 1.480212 AACCACGAGCTCCATCACCA 61.480 55.000 8.47 0.00 0.00 4.17
3892 5417 1.448540 CCACGAGCTCCATCACCAC 60.449 63.158 8.47 0.00 0.00 4.16
3893 5418 1.448540 CACGAGCTCCATCACCACC 60.449 63.158 8.47 0.00 0.00 4.61
3894 5419 1.913262 ACGAGCTCCATCACCACCA 60.913 57.895 8.47 0.00 0.00 4.17
3895 5420 1.448540 CGAGCTCCATCACCACCAC 60.449 63.158 8.47 0.00 0.00 4.16
3896 5421 1.448540 GAGCTCCATCACCACCACG 60.449 63.158 0.87 0.00 0.00 4.94
3897 5422 3.127533 GCTCCATCACCACCACGC 61.128 66.667 0.00 0.00 0.00 5.34
3898 5423 2.436646 CTCCATCACCACCACGCC 60.437 66.667 0.00 0.00 0.00 5.68
3899 5424 4.386951 TCCATCACCACCACGCCG 62.387 66.667 0.00 0.00 0.00 6.46
3900 5425 4.697756 CCATCACCACCACGCCGT 62.698 66.667 0.00 0.00 0.00 5.68
3901 5426 3.118454 CATCACCACCACGCCGTC 61.118 66.667 0.00 0.00 0.00 4.79
3902 5427 4.735132 ATCACCACCACGCCGTCG 62.735 66.667 0.00 0.00 42.43 5.12
3915 5440 2.050351 CGTCGTGCTGTCGGAGTT 60.050 61.111 0.00 0.00 0.00 3.01
3916 5441 2.081212 CGTCGTGCTGTCGGAGTTC 61.081 63.158 0.00 0.00 0.00 3.01
3917 5442 1.286260 GTCGTGCTGTCGGAGTTCT 59.714 57.895 0.00 0.00 0.00 3.01
3918 5443 0.729816 GTCGTGCTGTCGGAGTTCTC 60.730 60.000 0.00 0.00 0.00 2.87
3919 5444 1.444553 CGTGCTGTCGGAGTTCTCC 60.445 63.158 8.66 8.66 0.00 3.71
3920 5445 1.079750 GTGCTGTCGGAGTTCTCCC 60.080 63.158 12.54 1.46 0.00 4.30
3921 5446 1.228894 TGCTGTCGGAGTTCTCCCT 60.229 57.895 12.54 0.00 0.00 4.20
3922 5447 1.251527 TGCTGTCGGAGTTCTCCCTC 61.252 60.000 12.54 7.02 0.00 4.30
3923 5448 1.251527 GCTGTCGGAGTTCTCCCTCA 61.252 60.000 12.54 10.56 32.91 3.86
3924 5449 0.814457 CTGTCGGAGTTCTCCCTCAG 59.186 60.000 12.54 15.06 32.91 3.35
3925 5450 1.251527 TGTCGGAGTTCTCCCTCAGC 61.252 60.000 12.54 1.05 32.91 4.26
3926 5451 0.968393 GTCGGAGTTCTCCCTCAGCT 60.968 60.000 12.54 0.00 32.91 4.24
3927 5452 0.251832 TCGGAGTTCTCCCTCAGCTT 60.252 55.000 12.54 0.00 32.91 3.74
3928 5453 0.174617 CGGAGTTCTCCCTCAGCTTC 59.825 60.000 12.54 0.00 32.91 3.86
3929 5454 1.567357 GGAGTTCTCCCTCAGCTTCT 58.433 55.000 7.57 0.00 32.91 2.85
3930 5455 1.480545 GGAGTTCTCCCTCAGCTTCTC 59.519 57.143 7.57 0.00 32.91 2.87
3931 5456 1.480545 GAGTTCTCCCTCAGCTTCTCC 59.519 57.143 0.00 0.00 0.00 3.71
3932 5457 1.078656 AGTTCTCCCTCAGCTTCTCCT 59.921 52.381 0.00 0.00 0.00 3.69
3933 5458 1.480545 GTTCTCCCTCAGCTTCTCCTC 59.519 57.143 0.00 0.00 0.00 3.71
3934 5459 1.006813 TCTCCCTCAGCTTCTCCTCT 58.993 55.000 0.00 0.00 0.00 3.69
3935 5460 1.064017 TCTCCCTCAGCTTCTCCTCTC 60.064 57.143 0.00 0.00 0.00 3.20
3936 5461 0.032615 TCCCTCAGCTTCTCCTCTCC 60.033 60.000 0.00 0.00 0.00 3.71
3937 5462 1.048160 CCCTCAGCTTCTCCTCTCCC 61.048 65.000 0.00 0.00 0.00 4.30
3938 5463 1.391157 CCTCAGCTTCTCCTCTCCCG 61.391 65.000 0.00 0.00 0.00 5.14
3939 5464 0.682855 CTCAGCTTCTCCTCTCCCGT 60.683 60.000 0.00 0.00 0.00 5.28
3940 5465 0.251832 TCAGCTTCTCCTCTCCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
3941 5466 0.108424 CAGCTTCTCCTCTCCCGTTG 60.108 60.000 0.00 0.00 0.00 4.10
3942 5467 1.448717 GCTTCTCCTCTCCCGTTGC 60.449 63.158 0.00 0.00 0.00 4.17
3943 5468 1.893919 GCTTCTCCTCTCCCGTTGCT 61.894 60.000 0.00 0.00 0.00 3.91
3944 5469 0.108424 CTTCTCCTCTCCCGTTGCTG 60.108 60.000 0.00 0.00 0.00 4.41
3945 5470 1.544825 TTCTCCTCTCCCGTTGCTGG 61.545 60.000 0.00 0.00 0.00 4.85
3946 5471 1.984570 CTCCTCTCCCGTTGCTGGA 60.985 63.158 0.00 0.00 0.00 3.86
3947 5472 1.306141 TCCTCTCCCGTTGCTGGAT 60.306 57.895 0.00 0.00 0.00 3.41
3948 5473 1.144936 CCTCTCCCGTTGCTGGATC 59.855 63.158 0.00 0.00 0.00 3.36
3949 5474 1.617018 CCTCTCCCGTTGCTGGATCA 61.617 60.000 0.00 0.00 0.00 2.92
3950 5475 0.250234 CTCTCCCGTTGCTGGATCAA 59.750 55.000 0.00 0.00 0.00 2.57
3951 5476 0.250234 TCTCCCGTTGCTGGATCAAG 59.750 55.000 0.00 0.00 0.00 3.02
3952 5477 0.250234 CTCCCGTTGCTGGATCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
3953 5478 0.690192 TCCCGTTGCTGGATCAAGAA 59.310 50.000 0.00 0.00 0.00 2.52
3954 5479 1.089920 CCCGTTGCTGGATCAAGAAG 58.910 55.000 0.00 0.00 0.00 2.85
3955 5480 1.089920 CCGTTGCTGGATCAAGAAGG 58.910 55.000 0.00 0.00 0.00 3.46
3956 5481 1.339055 CCGTTGCTGGATCAAGAAGGA 60.339 52.381 0.00 0.00 0.00 3.36
3957 5482 2.005451 CGTTGCTGGATCAAGAAGGAG 58.995 52.381 0.00 0.00 0.00 3.69
3958 5483 2.363683 GTTGCTGGATCAAGAAGGAGG 58.636 52.381 0.00 0.00 0.00 4.30
3959 5484 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
3960 5485 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
3961 5486 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
3962 5487 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
3963 5488 3.102972 CTGGATCAAGAAGGAGGAGACA 58.897 50.000 0.00 0.00 0.00 3.41
3964 5489 3.710677 CTGGATCAAGAAGGAGGAGACAT 59.289 47.826 0.00 0.00 0.00 3.06
3965 5490 3.708631 TGGATCAAGAAGGAGGAGACATC 59.291 47.826 0.00 0.00 0.00 3.06
3974 5499 3.866582 GGAGACATCCCCGGGCTG 61.867 72.222 17.73 17.45 40.03 4.85
3975 5500 3.083997 GAGACATCCCCGGGCTGT 61.084 66.667 22.80 22.80 0.00 4.40
3976 5501 1.760875 GAGACATCCCCGGGCTGTA 60.761 63.158 22.69 6.25 0.00 2.74
3977 5502 2.029307 GAGACATCCCCGGGCTGTAC 62.029 65.000 22.69 16.70 0.00 2.90
3978 5503 3.441011 GACATCCCCGGGCTGTACG 62.441 68.421 22.69 6.39 0.00 3.67
3979 5504 3.467226 CATCCCCGGGCTGTACGT 61.467 66.667 17.73 0.00 0.00 3.57
3980 5505 3.467226 ATCCCCGGGCTGTACGTG 61.467 66.667 17.73 0.00 0.00 4.49
3982 5507 4.752879 CCCCGGGCTGTACGTGTG 62.753 72.222 17.73 0.00 0.00 3.82
3983 5508 3.998672 CCCGGGCTGTACGTGTGT 61.999 66.667 8.08 0.00 0.00 3.72
3984 5509 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
3985 5510 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
3986 5511 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
3987 5512 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
3988 5513 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
3989 5514 1.292061 GGCTGTACGTGTGTTGAACA 58.708 50.000 0.00 0.00 36.04 3.18
3997 5522 2.935955 GTGTTGAACACGGAGGCG 59.064 61.111 13.14 0.00 39.53 5.52
3998 5523 2.970324 TGTTGAACACGGAGGCGC 60.970 61.111 0.00 0.00 0.00 6.53
3999 5524 3.723348 GTTGAACACGGAGGCGCC 61.723 66.667 21.89 21.89 0.00 6.53
4015 5540 3.763319 CCGTTCGTTCGGTGCTAG 58.237 61.111 11.50 0.00 44.77 3.42
4016 5541 1.210931 CCGTTCGTTCGGTGCTAGA 59.789 57.895 11.50 0.00 44.77 2.43
4017 5542 0.179145 CCGTTCGTTCGGTGCTAGAT 60.179 55.000 11.50 0.00 44.77 1.98
4018 5543 1.189403 CGTTCGTTCGGTGCTAGATC 58.811 55.000 0.00 0.00 0.00 2.75
4019 5544 1.189403 GTTCGTTCGGTGCTAGATCG 58.811 55.000 0.00 0.00 33.57 3.69
4020 5545 0.099968 TTCGTTCGGTGCTAGATCGG 59.900 55.000 0.00 0.00 33.25 4.18
4021 5546 0.745486 TCGTTCGGTGCTAGATCGGA 60.745 55.000 0.00 0.00 33.25 4.55
4022 5547 0.311165 CGTTCGGTGCTAGATCGGAT 59.689 55.000 0.00 0.00 0.00 4.18
4023 5548 1.663445 CGTTCGGTGCTAGATCGGATC 60.663 57.143 10.02 10.02 0.00 3.36
4024 5549 1.337071 GTTCGGTGCTAGATCGGATCA 59.663 52.381 19.47 5.54 0.00 2.92
4025 5550 1.911057 TCGGTGCTAGATCGGATCAT 58.089 50.000 19.47 7.76 0.00 2.45
4026 5551 1.813178 TCGGTGCTAGATCGGATCATC 59.187 52.381 19.47 8.57 0.00 2.92
4027 5552 1.135257 CGGTGCTAGATCGGATCATCC 60.135 57.143 19.47 11.99 0.00 3.51
4039 5564 3.461946 GGATCATCCGCGATTTGAATC 57.538 47.619 8.23 2.60 0.00 2.52
4050 5575 3.570939 GATTTGAATCGCCGTGAGTAC 57.429 47.619 0.00 0.00 0.00 2.73
4063 5588 2.877335 GTGAGTACGACTCCATCAACC 58.123 52.381 11.01 0.00 44.44 3.77
4064 5589 1.471287 TGAGTACGACTCCATCAACCG 59.529 52.381 11.01 0.00 44.44 4.44
4065 5590 0.172803 AGTACGACTCCATCAACCGC 59.827 55.000 0.00 0.00 0.00 5.68
4066 5591 1.138036 TACGACTCCATCAACCGCG 59.862 57.895 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.095440 GGCCTGAATTTTCTCTGCACTTAATA 59.905 38.462 0.00 0.00 0.00 0.98
120 131 1.541233 CGAAGGTCATATGCTGGGGAC 60.541 57.143 0.00 0.00 0.00 4.46
392 406 3.181474 GGCCTACAGTACTCTGAATCACC 60.181 52.174 0.00 0.00 43.76 4.02
415 429 7.148137 ACACCGAGTAAAAGAAATGTTCACTTT 60.148 33.333 0.00 0.00 35.74 2.66
477 492 1.227853 ACGGACAAGGCTGTGTTCC 60.228 57.895 0.00 0.00 35.30 3.62
955 977 7.767198 ACGTACTGTACCAATTAAGCATATGTT 59.233 33.333 12.08 0.00 0.00 2.71
1026 1048 7.822334 AGAATATGTGAACGAACATTAAGGTGA 59.178 33.333 0.00 0.00 41.09 4.02
1050 1072 7.778853 AGGACGTAAGATTCAGAGGTATTAAGA 59.221 37.037 0.00 0.00 43.62 2.10
1071 1093 2.160417 GGCTTCATTCTCACAAAGGACG 59.840 50.000 0.00 0.00 0.00 4.79
1170 1192 1.630878 ACCTCCTCAAAGTGATCCCAC 59.369 52.381 0.00 0.00 43.50 4.61
1218 2734 6.597672 TGCACTTAACTTTTCTCTCTGTTTCA 59.402 34.615 0.00 0.00 0.00 2.69
1356 2872 2.095110 CGCATCAAAATTCAGAGTGCCA 60.095 45.455 0.00 0.00 0.00 4.92
1638 3155 6.888632 AGAGATCACATGTGAGGCTAATTTTT 59.111 34.615 30.63 12.31 43.61 1.94
1885 3402 5.530915 CCTTAAACTTGGACATCAGTTGACA 59.469 40.000 0.00 0.00 0.00 3.58
1913 3430 4.030216 ACCATGGAAAAACACACTTCCTT 58.970 39.130 21.47 0.00 41.52 3.36
1985 3502 6.267928 TGGTTCTATAGCCTTTAGGACATCTC 59.732 42.308 0.00 0.00 37.39 2.75
2052 3569 2.666272 TGTAGAGCCGAGATGGAGAT 57.334 50.000 0.00 0.00 42.00 2.75
2245 3762 3.340814 AGCATACAACCTCCACTCTTG 57.659 47.619 0.00 0.00 0.00 3.02
2625 4142 0.817013 CAACCAAGTTGGCTGTGTGT 59.183 50.000 22.25 0.00 42.67 3.72
3003 4523 5.686124 GCCTCTAATCCAACTAGCTGAACAT 60.686 44.000 0.00 0.00 0.00 2.71
3810 5335 3.950861 TTGGAGGAGGGAGGGGCTG 62.951 68.421 0.00 0.00 0.00 4.85
3811 5336 3.626596 TTGGAGGAGGGAGGGGCT 61.627 66.667 0.00 0.00 0.00 5.19
3812 5337 3.412408 GTTGGAGGAGGGAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
3813 5338 2.124996 TGTTGGAGGAGGGAGGGG 59.875 66.667 0.00 0.00 0.00 4.79
3814 5339 0.842467 AAGTGTTGGAGGAGGGAGGG 60.842 60.000 0.00 0.00 0.00 4.30
3815 5340 0.615850 GAAGTGTTGGAGGAGGGAGG 59.384 60.000 0.00 0.00 0.00 4.30
3816 5341 0.615850 GGAAGTGTTGGAGGAGGGAG 59.384 60.000 0.00 0.00 0.00 4.30
3817 5342 0.193574 AGGAAGTGTTGGAGGAGGGA 59.806 55.000 0.00 0.00 0.00 4.20
3818 5343 0.615850 GAGGAAGTGTTGGAGGAGGG 59.384 60.000 0.00 0.00 0.00 4.30
3819 5344 0.615850 GGAGGAAGTGTTGGAGGAGG 59.384 60.000 0.00 0.00 0.00 4.30
3820 5345 1.552792 GAGGAGGAAGTGTTGGAGGAG 59.447 57.143 0.00 0.00 0.00 3.69
3821 5346 1.645710 GAGGAGGAAGTGTTGGAGGA 58.354 55.000 0.00 0.00 0.00 3.71
3822 5347 0.615850 GGAGGAGGAAGTGTTGGAGG 59.384 60.000 0.00 0.00 0.00 4.30
3823 5348 1.552792 GAGGAGGAGGAAGTGTTGGAG 59.447 57.143 0.00 0.00 0.00 3.86
3824 5349 1.645710 GAGGAGGAGGAAGTGTTGGA 58.354 55.000 0.00 0.00 0.00 3.53
3825 5350 0.615850 GGAGGAGGAGGAAGTGTTGG 59.384 60.000 0.00 0.00 0.00 3.77
3826 5351 0.247736 CGGAGGAGGAGGAAGTGTTG 59.752 60.000 0.00 0.00 0.00 3.33
3827 5352 0.178929 ACGGAGGAGGAGGAAGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
3828 5353 0.702902 TACGGAGGAGGAGGAAGTGT 59.297 55.000 0.00 0.00 0.00 3.55
3829 5354 1.341187 ACTACGGAGGAGGAGGAAGTG 60.341 57.143 0.00 0.00 0.00 3.16
3830 5355 1.001282 ACTACGGAGGAGGAGGAAGT 58.999 55.000 0.00 0.00 0.00 3.01
3831 5356 1.394618 CACTACGGAGGAGGAGGAAG 58.605 60.000 0.00 0.00 0.00 3.46
3832 5357 0.683504 GCACTACGGAGGAGGAGGAA 60.684 60.000 0.00 0.00 0.00 3.36
3833 5358 1.076923 GCACTACGGAGGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
3834 5359 0.684805 AAGCACTACGGAGGAGGAGG 60.685 60.000 0.00 0.00 0.00 4.30
3835 5360 1.950909 CTAAGCACTACGGAGGAGGAG 59.049 57.143 0.00 0.00 0.00 3.69
3836 5361 2.022754 GCTAAGCACTACGGAGGAGGA 61.023 57.143 0.00 0.00 0.00 3.71
3837 5362 0.386113 GCTAAGCACTACGGAGGAGG 59.614 60.000 0.00 0.00 0.00 4.30
3838 5363 0.029567 CGCTAAGCACTACGGAGGAG 59.970 60.000 0.00 0.00 0.00 3.69
3839 5364 0.393402 TCGCTAAGCACTACGGAGGA 60.393 55.000 0.00 0.00 0.00 3.71
3840 5365 0.454600 TTCGCTAAGCACTACGGAGG 59.545 55.000 0.00 0.00 0.00 4.30
3841 5366 1.828832 CTTCGCTAAGCACTACGGAG 58.171 55.000 0.00 0.00 0.00 4.63
3851 5376 1.880340 CCGGCAGAGCTTCGCTAAG 60.880 63.158 8.07 0.00 39.88 2.18
3852 5377 2.184322 CCGGCAGAGCTTCGCTAA 59.816 61.111 8.07 0.00 39.88 3.09
3853 5378 2.754254 TCCGGCAGAGCTTCGCTA 60.754 61.111 0.00 0.00 39.88 4.26
3854 5379 4.140599 CTCCGGCAGAGCTTCGCT 62.141 66.667 0.00 0.00 43.88 4.93
3855 5380 3.649277 TTCTCCGGCAGAGCTTCGC 62.649 63.158 0.00 0.00 42.90 4.70
3856 5381 1.807573 GTTCTCCGGCAGAGCTTCG 60.808 63.158 0.00 0.00 42.90 3.79
3857 5382 1.448717 GGTTCTCCGGCAGAGCTTC 60.449 63.158 14.16 0.47 42.90 3.86
3858 5383 2.217038 TGGTTCTCCGGCAGAGCTT 61.217 57.895 14.16 0.00 42.90 3.74
3859 5384 2.604686 TGGTTCTCCGGCAGAGCT 60.605 61.111 14.16 0.00 42.90 4.09
3860 5385 2.435059 GTGGTTCTCCGGCAGAGC 60.435 66.667 0.00 2.76 42.90 4.09
3861 5386 2.125912 CGTGGTTCTCCGGCAGAG 60.126 66.667 0.00 0.00 44.75 3.35
3862 5387 2.599281 TCGTGGTTCTCCGGCAGA 60.599 61.111 0.00 0.00 36.30 4.26
3863 5388 2.125912 CTCGTGGTTCTCCGGCAG 60.126 66.667 0.00 0.00 36.30 4.85
3864 5389 4.373116 GCTCGTGGTTCTCCGGCA 62.373 66.667 0.00 0.00 36.30 5.69
3865 5390 3.991536 GAGCTCGTGGTTCTCCGGC 62.992 68.421 0.00 0.00 36.30 6.13
3866 5391 2.182030 GAGCTCGTGGTTCTCCGG 59.818 66.667 0.00 0.00 36.30 5.14
3867 5392 2.182030 GGAGCTCGTGGTTCTCCG 59.818 66.667 7.83 0.00 37.28 4.63
3868 5393 0.179097 GATGGAGCTCGTGGTTCTCC 60.179 60.000 7.83 0.00 45.02 3.71
3869 5394 0.532573 TGATGGAGCTCGTGGTTCTC 59.467 55.000 7.83 0.00 0.00 2.87
3870 5395 0.247736 GTGATGGAGCTCGTGGTTCT 59.752 55.000 7.83 0.00 0.00 3.01
3871 5396 0.741221 GGTGATGGAGCTCGTGGTTC 60.741 60.000 7.83 0.65 0.00 3.62
3872 5397 1.296715 GGTGATGGAGCTCGTGGTT 59.703 57.895 7.83 0.00 0.00 3.67
3873 5398 1.913262 TGGTGATGGAGCTCGTGGT 60.913 57.895 7.83 0.00 0.00 4.16
3874 5399 1.448540 GTGGTGATGGAGCTCGTGG 60.449 63.158 7.83 0.00 0.00 4.94
3875 5400 1.448540 GGTGGTGATGGAGCTCGTG 60.449 63.158 7.83 0.00 0.00 4.35
3876 5401 1.913262 TGGTGGTGATGGAGCTCGT 60.913 57.895 7.83 0.00 0.00 4.18
3877 5402 1.448540 GTGGTGGTGATGGAGCTCG 60.449 63.158 7.83 0.00 0.00 5.03
3878 5403 1.448540 CGTGGTGGTGATGGAGCTC 60.449 63.158 4.71 4.71 0.00 4.09
3879 5404 2.665000 CGTGGTGGTGATGGAGCT 59.335 61.111 0.00 0.00 0.00 4.09
3880 5405 3.127533 GCGTGGTGGTGATGGAGC 61.128 66.667 0.00 0.00 0.00 4.70
3881 5406 2.436646 GGCGTGGTGGTGATGGAG 60.437 66.667 0.00 0.00 0.00 3.86
3882 5407 4.386951 CGGCGTGGTGGTGATGGA 62.387 66.667 0.00 0.00 0.00 3.41
3883 5408 4.697756 ACGGCGTGGTGGTGATGG 62.698 66.667 13.76 0.00 0.00 3.51
3884 5409 3.118454 GACGGCGTGGTGGTGATG 61.118 66.667 21.19 0.00 0.00 3.07
3885 5410 4.735132 CGACGGCGTGGTGGTGAT 62.735 66.667 21.19 0.00 0.00 3.06
3898 5423 2.050351 AACTCCGACAGCACGACG 60.050 61.111 0.00 0.00 35.09 5.12
3899 5424 0.729816 GAGAACTCCGACAGCACGAC 60.730 60.000 0.00 0.00 35.09 4.34
3900 5425 1.579932 GAGAACTCCGACAGCACGA 59.420 57.895 0.00 0.00 35.09 4.35
3901 5426 1.444553 GGAGAACTCCGACAGCACG 60.445 63.158 5.06 0.00 40.36 5.34
3902 5427 4.580835 GGAGAACTCCGACAGCAC 57.419 61.111 5.06 0.00 40.36 4.40
3911 5436 1.480545 GGAGAAGCTGAGGGAGAACTC 59.519 57.143 0.00 0.00 37.99 3.01
3912 5437 1.078656 AGGAGAAGCTGAGGGAGAACT 59.921 52.381 0.00 0.00 0.00 3.01
3913 5438 1.480545 GAGGAGAAGCTGAGGGAGAAC 59.519 57.143 0.00 0.00 0.00 3.01
3914 5439 1.360852 AGAGGAGAAGCTGAGGGAGAA 59.639 52.381 0.00 0.00 0.00 2.87
3915 5440 1.006813 AGAGGAGAAGCTGAGGGAGA 58.993 55.000 0.00 0.00 0.00 3.71
3916 5441 1.402787 GAGAGGAGAAGCTGAGGGAG 58.597 60.000 0.00 0.00 0.00 4.30
3917 5442 0.032615 GGAGAGGAGAAGCTGAGGGA 60.033 60.000 0.00 0.00 0.00 4.20
3918 5443 1.048160 GGGAGAGGAGAAGCTGAGGG 61.048 65.000 0.00 0.00 0.00 4.30
3919 5444 1.391157 CGGGAGAGGAGAAGCTGAGG 61.391 65.000 0.00 0.00 0.00 3.86
3920 5445 0.682855 ACGGGAGAGGAGAAGCTGAG 60.683 60.000 0.00 0.00 0.00 3.35
3921 5446 0.251832 AACGGGAGAGGAGAAGCTGA 60.252 55.000 0.00 0.00 0.00 4.26
3922 5447 0.108424 CAACGGGAGAGGAGAAGCTG 60.108 60.000 0.00 0.00 0.00 4.24
3923 5448 1.893919 GCAACGGGAGAGGAGAAGCT 61.894 60.000 0.00 0.00 0.00 3.74
3924 5449 1.448717 GCAACGGGAGAGGAGAAGC 60.449 63.158 0.00 0.00 0.00 3.86
3925 5450 0.108424 CAGCAACGGGAGAGGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
3926 5451 1.544825 CCAGCAACGGGAGAGGAGAA 61.545 60.000 0.00 0.00 0.00 2.87
3927 5452 1.984570 CCAGCAACGGGAGAGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
3928 5453 1.333636 ATCCAGCAACGGGAGAGGAG 61.334 60.000 0.00 0.00 37.96 3.69
3929 5454 1.306141 ATCCAGCAACGGGAGAGGA 60.306 57.895 0.00 0.00 37.96 3.71
3930 5455 1.144936 GATCCAGCAACGGGAGAGG 59.855 63.158 0.00 0.00 37.96 3.69
3931 5456 0.250234 TTGATCCAGCAACGGGAGAG 59.750 55.000 0.00 0.00 37.96 3.20
3932 5457 0.250234 CTTGATCCAGCAACGGGAGA 59.750 55.000 0.00 0.00 37.96 3.71
3933 5458 0.250234 TCTTGATCCAGCAACGGGAG 59.750 55.000 0.00 0.00 37.96 4.30
3934 5459 0.690192 TTCTTGATCCAGCAACGGGA 59.310 50.000 0.00 0.00 39.14 5.14
3935 5460 1.089920 CTTCTTGATCCAGCAACGGG 58.910 55.000 0.00 0.00 0.00 5.28
3936 5461 1.089920 CCTTCTTGATCCAGCAACGG 58.910 55.000 0.00 0.00 0.00 4.44
3937 5462 2.005451 CTCCTTCTTGATCCAGCAACG 58.995 52.381 0.00 0.00 0.00 4.10
3938 5463 2.026822 TCCTCCTTCTTGATCCAGCAAC 60.027 50.000 0.00 0.00 0.00 4.17
3939 5464 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
3940 5465 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
3941 5466 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
3942 5467 3.102972 TGTCTCCTCCTTCTTGATCCAG 58.897 50.000 0.00 0.00 0.00 3.86
3943 5468 3.190383 TGTCTCCTCCTTCTTGATCCA 57.810 47.619 0.00 0.00 0.00 3.41
3944 5469 3.070878 GGATGTCTCCTCCTTCTTGATCC 59.929 52.174 0.00 0.00 38.65 3.36
3945 5470 3.070878 GGGATGTCTCCTCCTTCTTGATC 59.929 52.174 0.00 0.00 41.74 2.92
3946 5471 3.044894 GGGATGTCTCCTCCTTCTTGAT 58.955 50.000 0.00 0.00 41.74 2.57
3947 5472 2.472029 GGGATGTCTCCTCCTTCTTGA 58.528 52.381 0.00 0.00 41.74 3.02
3948 5473 1.488393 GGGGATGTCTCCTCCTTCTTG 59.512 57.143 0.00 0.00 41.74 3.02
3949 5474 1.886422 GGGGATGTCTCCTCCTTCTT 58.114 55.000 0.00 0.00 41.74 2.52
3950 5475 0.397816 CGGGGATGTCTCCTCCTTCT 60.398 60.000 0.00 0.00 39.07 2.85
3951 5476 1.403687 CCGGGGATGTCTCCTCCTTC 61.404 65.000 0.00 0.00 39.07 3.46
3952 5477 1.383248 CCGGGGATGTCTCCTCCTT 60.383 63.158 0.00 0.00 39.07 3.36
3953 5478 2.283809 CCGGGGATGTCTCCTCCT 59.716 66.667 0.00 0.00 39.07 3.69
3954 5479 2.844839 CCCGGGGATGTCTCCTCC 60.845 72.222 14.71 0.00 39.07 4.30
3955 5480 3.551407 GCCCGGGGATGTCTCCTC 61.551 72.222 25.28 0.00 41.74 3.71
3956 5481 4.095400 AGCCCGGGGATGTCTCCT 62.095 66.667 25.28 4.64 41.74 3.69
3957 5482 3.866582 CAGCCCGGGGATGTCTCC 61.867 72.222 25.28 1.76 41.26 3.71
3962 5487 3.467226 ACGTACAGCCCGGGGATG 61.467 66.667 29.00 29.00 45.59 3.51
3963 5488 3.467226 CACGTACAGCCCGGGGAT 61.467 66.667 25.28 8.03 0.00 3.85
3965 5490 4.752879 CACACGTACAGCCCGGGG 62.753 72.222 25.28 9.31 31.63 5.73
3966 5491 3.524648 AACACACGTACAGCCCGGG 62.525 63.158 19.09 19.09 34.16 5.73
3967 5492 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
3968 5493 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
3969 5494 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
3970 5495 1.292061 TGTTCAACACACGTACAGCC 58.708 50.000 0.00 0.00 0.00 4.85
3980 5505 2.935955 CGCCTCCGTGTTCAACAC 59.064 61.111 10.92 10.92 45.26 3.32
3981 5506 2.970324 GCGCCTCCGTGTTCAACA 60.970 61.111 0.00 0.00 36.67 3.33
3982 5507 3.723348 GGCGCCTCCGTGTTCAAC 61.723 66.667 22.15 0.00 36.67 3.18
3999 5524 1.189403 GATCTAGCACCGAACGAACG 58.811 55.000 0.00 0.00 0.00 3.95
4000 5525 1.189403 CGATCTAGCACCGAACGAAC 58.811 55.000 0.00 0.00 0.00 3.95
4001 5526 0.099968 CCGATCTAGCACCGAACGAA 59.900 55.000 0.00 0.00 0.00 3.85
4002 5527 0.745486 TCCGATCTAGCACCGAACGA 60.745 55.000 0.00 0.00 0.00 3.85
4003 5528 0.311165 ATCCGATCTAGCACCGAACG 59.689 55.000 0.00 0.00 0.00 3.95
4004 5529 1.337071 TGATCCGATCTAGCACCGAAC 59.663 52.381 9.78 0.00 0.00 3.95
4005 5530 1.687563 TGATCCGATCTAGCACCGAA 58.312 50.000 9.78 0.00 0.00 4.30
4006 5531 1.813178 GATGATCCGATCTAGCACCGA 59.187 52.381 9.78 0.00 0.00 4.69
4007 5532 1.135257 GGATGATCCGATCTAGCACCG 60.135 57.143 9.78 0.00 0.00 4.94
4008 5533 2.663826 GGATGATCCGATCTAGCACC 57.336 55.000 9.78 2.98 0.00 5.01
4019 5544 3.461946 GATTCAAATCGCGGATGATCC 57.538 47.619 6.13 0.08 0.00 3.36
4030 5555 2.034842 CGTACTCACGGCGATTCAAATC 60.035 50.000 16.62 0.00 44.59 2.17
4031 5556 1.924524 CGTACTCACGGCGATTCAAAT 59.075 47.619 16.62 0.00 44.59 2.32
4032 5557 1.342555 CGTACTCACGGCGATTCAAA 58.657 50.000 16.62 0.00 44.59 2.69
4033 5558 3.024423 CGTACTCACGGCGATTCAA 57.976 52.632 16.62 0.00 44.59 2.69
4034 5559 4.777781 CGTACTCACGGCGATTCA 57.222 55.556 16.62 0.00 44.59 2.57
4041 5566 1.092348 TGATGGAGTCGTACTCACGG 58.908 55.000 14.26 0.00 46.79 4.94
4042 5567 2.516923 GTTGATGGAGTCGTACTCACG 58.483 52.381 14.26 0.00 46.79 4.35
4043 5568 2.731341 CGGTTGATGGAGTCGTACTCAC 60.731 54.545 14.26 5.92 46.79 3.51
4044 5569 1.471287 CGGTTGATGGAGTCGTACTCA 59.529 52.381 14.26 4.44 46.79 3.41
4045 5570 1.798079 GCGGTTGATGGAGTCGTACTC 60.798 57.143 6.50 6.50 44.32 2.59
4046 5571 0.172803 GCGGTTGATGGAGTCGTACT 59.827 55.000 0.00 0.00 0.00 2.73
4047 5572 1.138047 CGCGGTTGATGGAGTCGTAC 61.138 60.000 0.00 0.00 0.00 3.67
4048 5573 1.138036 CGCGGTTGATGGAGTCGTA 59.862 57.895 0.00 0.00 0.00 3.43
4049 5574 2.126071 CGCGGTTGATGGAGTCGT 60.126 61.111 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.