Multiple sequence alignment - TraesCS6B01G422900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G422900 chr6B 100.000 3380 0 0 1 3380 693064992 693061613 0.000000e+00 6242.0
1 TraesCS6B01G422900 chr6B 77.922 154 26 7 2090 2239 573413858 573413709 4.650000e-14 89.8
2 TraesCS6B01G422900 chr6A 92.022 2394 128 40 518 2877 602625299 602622935 0.000000e+00 3304.0
3 TraesCS6B01G422900 chr6A 76.339 1382 272 45 1001 2344 13505060 13503696 0.000000e+00 689.0
4 TraesCS6B01G422900 chr6A 87.678 211 20 5 3133 3340 602621103 602620896 1.210000e-59 241.0
5 TraesCS6B01G422900 chr6A 85.167 209 17 5 227 435 602625528 602625334 5.720000e-48 202.0
6 TraesCS6B01G422900 chr6A 84.956 113 15 1 3205 3315 602604370 602604258 2.760000e-21 113.0
7 TraesCS6B01G422900 chr6D 92.445 2356 91 50 365 2690 455831258 455828960 0.000000e+00 3284.0
8 TraesCS6B01G422900 chr6D 83.922 566 53 20 2187 2732 455825247 455824700 1.080000e-139 507.0
9 TraesCS6B01G422900 chr6D 88.630 343 29 7 3010 3349 455822077 455821742 3.140000e-110 409.0
10 TraesCS6B01G422900 chr6D 87.466 367 26 13 2994 3346 455828711 455828351 4.060000e-109 405.0
11 TraesCS6B01G422900 chr6D 85.205 365 38 11 2994 3349 455824371 455824014 8.920000e-96 361.0
12 TraesCS6B01G422900 chr6D 87.907 215 21 4 2994 3204 455827247 455827034 7.240000e-62 248.0
13 TraesCS6B01G422900 chr6D 82.162 185 23 6 3167 3346 455770456 455770277 2.100000e-32 150.0
14 TraesCS6B01G422900 chr1A 78.993 1390 244 37 1000 2356 21986955 21985581 0.000000e+00 905.0
15 TraesCS6B01G422900 chr1A 85.714 224 27 4 1 223 91856758 91856539 7.290000e-57 231.0
16 TraesCS6B01G422900 chr1A 74.632 272 61 6 1000 1267 261247312 261247579 2.760000e-21 113.0
17 TraesCS6B01G422900 chr1D 78.468 1384 244 44 1000 2347 20568290 20569655 0.000000e+00 856.0
18 TraesCS6B01G422900 chr1D 84.821 224 29 5 1 223 329482634 329482853 1.580000e-53 220.0
19 TraesCS6B01G422900 chr1D 76.103 272 57 8 1000 1267 204797112 204797379 5.880000e-28 135.0
20 TraesCS6B01G422900 chr1B 77.922 1386 248 50 1000 2347 33067101 33065736 0.000000e+00 811.0
21 TraesCS6B01G422900 chr1B 75.806 1178 239 39 1001 2149 642956980 642958140 3.810000e-154 555.0
22 TraesCS6B01G422900 chr1B 75.926 270 61 4 1000 1267 300720555 300720822 5.880000e-28 135.0
23 TraesCS6B01G422900 chr4D 84.821 224 28 6 1 223 194854583 194854365 1.580000e-53 220.0
24 TraesCS6B01G422900 chr2B 84.500 200 26 4 12 211 216277507 216277313 3.440000e-45 193.0
25 TraesCS6B01G422900 chr7B 83.684 190 21 7 24 212 427824736 427824916 1.610000e-38 171.0
26 TraesCS6B01G422900 chr5B 86.624 157 18 3 9 165 284200374 284200527 1.610000e-38 171.0
27 TraesCS6B01G422900 chr7A 83.688 141 20 2 1 141 44210954 44210817 2.740000e-26 130.0
28 TraesCS6B01G422900 chr7A 74.089 247 50 13 2000 2239 167903615 167903376 4.650000e-14 89.8
29 TraesCS6B01G422900 chr7A 77.922 154 26 8 2078 2227 545935580 545935729 4.650000e-14 89.8
30 TraesCS6B01G422900 chr4A 75.000 200 39 10 1488 1680 24556991 24556796 7.770000e-12 82.4
31 TraesCS6B01G422900 chr7D 83.607 61 9 1 166 226 27381955 27381896 4.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G422900 chr6B 693061613 693064992 3379 True 6242 6242 100.000000 1 3380 1 chr6B.!!$R2 3379
1 TraesCS6B01G422900 chr6A 602620896 602625528 4632 True 1249 3304 88.289000 227 3340 3 chr6A.!!$R3 3113
2 TraesCS6B01G422900 chr6A 13503696 13505060 1364 True 689 689 76.339000 1001 2344 1 chr6A.!!$R1 1343
3 TraesCS6B01G422900 chr6D 455821742 455831258 9516 True 869 3284 87.595833 365 3349 6 chr6D.!!$R2 2984
4 TraesCS6B01G422900 chr1A 21985581 21986955 1374 True 905 905 78.993000 1000 2356 1 chr1A.!!$R1 1356
5 TraesCS6B01G422900 chr1D 20568290 20569655 1365 False 856 856 78.468000 1000 2347 1 chr1D.!!$F1 1347
6 TraesCS6B01G422900 chr1B 33065736 33067101 1365 True 811 811 77.922000 1000 2347 1 chr1B.!!$R1 1347
7 TraesCS6B01G422900 chr1B 642956980 642958140 1160 False 555 555 75.806000 1001 2149 1 chr1B.!!$F2 1148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.256752 ATCTAGTGGCCAAGCATGCA 59.743 50.000 21.98 0.0 0.00 3.96 F
80 81 0.384309 CTAGTGGCCAAGCATGCATG 59.616 55.000 22.70 22.7 0.00 4.06 F
277 278 0.745486 TGGATCGAGCTTCCGACGTA 60.745 55.000 0.00 0.0 41.70 3.57 F
611 632 1.079266 GTGCCAGTGCCAGAGAGAG 60.079 63.158 0.00 0.0 36.33 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1428 0.865111 CGACATTGAGCACGACCAAA 59.135 50.000 0.00 0.00 0.00 3.28 R
1390 1429 0.948623 CCGACATTGAGCACGACCAA 60.949 55.000 0.00 0.00 0.00 3.67 R
2101 2161 3.622826 CGACGTGTTCCCCCACCT 61.623 66.667 0.00 0.00 31.47 4.00 R
2558 2628 8.736244 ACAGTCGTACATACACATATATATGCA 58.264 33.333 20.46 8.33 37.19 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.872721 TTAGATCATTGCATGCAAGAATTAAAA 57.127 25.926 34.15 20.46 39.47 1.52
27 28 8.780846 AGATCATTGCATGCAAGAATTAAAAA 57.219 26.923 34.15 11.38 39.47 1.94
28 29 8.879759 AGATCATTGCATGCAAGAATTAAAAAG 58.120 29.630 34.15 15.08 39.47 2.27
29 30 8.780846 ATCATTGCATGCAAGAATTAAAAAGA 57.219 26.923 34.15 18.85 39.47 2.52
30 31 8.604640 TCATTGCATGCAAGAATTAAAAAGAA 57.395 26.923 34.15 10.19 39.47 2.52
31 32 8.497554 TCATTGCATGCAAGAATTAAAAAGAAC 58.502 29.630 34.15 0.00 39.47 3.01
32 33 7.783090 TTGCATGCAAGAATTAAAAAGAACA 57.217 28.000 28.80 0.37 0.00 3.18
33 34 7.176285 TGCATGCAAGAATTAAAAAGAACAC 57.824 32.000 20.30 0.00 0.00 3.32
34 35 6.760298 TGCATGCAAGAATTAAAAAGAACACA 59.240 30.769 20.30 0.00 0.00 3.72
35 36 7.065283 GCATGCAAGAATTAAAAAGAACACAC 58.935 34.615 14.21 0.00 0.00 3.82
36 37 7.566709 CATGCAAGAATTAAAAAGAACACACC 58.433 34.615 0.00 0.00 0.00 4.16
37 38 6.634805 TGCAAGAATTAAAAAGAACACACCA 58.365 32.000 0.00 0.00 0.00 4.17
38 39 7.099764 TGCAAGAATTAAAAAGAACACACCAA 58.900 30.769 0.00 0.00 0.00 3.67
39 40 7.768120 TGCAAGAATTAAAAAGAACACACCAAT 59.232 29.630 0.00 0.00 0.00 3.16
40 41 8.063630 GCAAGAATTAAAAAGAACACACCAATG 58.936 33.333 0.00 0.00 0.00 2.82
41 42 7.713764 AGAATTAAAAAGAACACACCAATGC 57.286 32.000 0.00 0.00 0.00 3.56
42 43 7.271511 AGAATTAAAAAGAACACACCAATGCA 58.728 30.769 0.00 0.00 0.00 3.96
43 44 7.933033 AGAATTAAAAAGAACACACCAATGCAT 59.067 29.630 0.00 0.00 0.00 3.96
44 45 6.841443 TTAAAAAGAACACACCAATGCATG 57.159 33.333 0.00 0.00 0.00 4.06
45 46 4.405116 AAAAGAACACACCAATGCATGT 57.595 36.364 0.00 0.00 0.00 3.21
46 47 5.528043 AAAAGAACACACCAATGCATGTA 57.472 34.783 0.00 0.00 0.00 2.29
47 48 5.528043 AAAGAACACACCAATGCATGTAA 57.472 34.783 0.00 0.00 0.00 2.41
48 49 5.726980 AAGAACACACCAATGCATGTAAT 57.273 34.783 0.00 0.00 0.00 1.89
49 50 6.832520 AAGAACACACCAATGCATGTAATA 57.167 33.333 0.00 0.00 0.00 0.98
50 51 7.408756 AAGAACACACCAATGCATGTAATAT 57.591 32.000 0.00 0.00 0.00 1.28
51 52 7.408756 AGAACACACCAATGCATGTAATATT 57.591 32.000 0.00 0.00 0.00 1.28
52 53 7.839907 AGAACACACCAATGCATGTAATATTT 58.160 30.769 0.00 0.00 0.00 1.40
53 54 7.975616 AGAACACACCAATGCATGTAATATTTC 59.024 33.333 0.00 0.00 0.00 2.17
54 55 7.408756 ACACACCAATGCATGTAATATTTCT 57.591 32.000 0.00 0.00 0.00 2.52
55 56 8.518430 ACACACCAATGCATGTAATATTTCTA 57.482 30.769 0.00 0.00 0.00 2.10
56 57 9.135189 ACACACCAATGCATGTAATATTTCTAT 57.865 29.630 0.00 0.00 0.00 1.98
57 58 9.616634 CACACCAATGCATGTAATATTTCTATC 57.383 33.333 0.00 0.00 0.00 2.08
58 59 8.796475 ACACCAATGCATGTAATATTTCTATCC 58.204 33.333 0.00 0.00 0.00 2.59
59 60 8.795513 CACCAATGCATGTAATATTTCTATCCA 58.204 33.333 0.00 0.00 0.00 3.41
60 61 9.537852 ACCAATGCATGTAATATTTCTATCCAT 57.462 29.630 0.00 0.00 0.00 3.41
75 76 3.815133 CCATCTAGTGGCCAAGCAT 57.185 52.632 7.24 0.00 42.12 3.79
76 77 1.315690 CCATCTAGTGGCCAAGCATG 58.684 55.000 7.24 7.65 42.12 4.06
77 78 0.666913 CATCTAGTGGCCAAGCATGC 59.333 55.000 7.24 10.51 0.00 4.06
78 79 0.256752 ATCTAGTGGCCAAGCATGCA 59.743 50.000 21.98 0.00 0.00 3.96
79 80 0.256752 TCTAGTGGCCAAGCATGCAT 59.743 50.000 21.98 4.57 0.00 3.96
80 81 0.384309 CTAGTGGCCAAGCATGCATG 59.616 55.000 22.70 22.70 0.00 4.06
128 129 9.672673 ATGCATGAATTTAACTTGAGTAGTAGT 57.327 29.630 0.00 0.00 35.54 2.73
129 130 9.502091 TGCATGAATTTAACTTGAGTAGTAGTT 57.498 29.630 0.00 0.00 35.54 2.24
160 161 2.328473 CGAGATGCGTTTCTTCACTCA 58.672 47.619 0.00 0.00 34.64 3.41
161 162 2.091277 CGAGATGCGTTTCTTCACTCAC 59.909 50.000 0.00 0.00 34.64 3.51
162 163 3.059884 GAGATGCGTTTCTTCACTCACA 58.940 45.455 0.00 0.00 0.00 3.58
163 164 3.466836 AGATGCGTTTCTTCACTCACAA 58.533 40.909 0.00 0.00 0.00 3.33
164 165 3.876914 AGATGCGTTTCTTCACTCACAAA 59.123 39.130 0.00 0.00 0.00 2.83
165 166 4.335315 AGATGCGTTTCTTCACTCACAAAA 59.665 37.500 0.00 0.00 0.00 2.44
166 167 4.630894 TGCGTTTCTTCACTCACAAAAT 57.369 36.364 0.00 0.00 0.00 1.82
167 168 4.350346 TGCGTTTCTTCACTCACAAAATG 58.650 39.130 0.00 0.00 0.00 2.32
168 169 4.142491 TGCGTTTCTTCACTCACAAAATGT 60.142 37.500 0.00 0.00 0.00 2.71
169 170 4.437820 GCGTTTCTTCACTCACAAAATGTC 59.562 41.667 0.00 0.00 0.00 3.06
170 171 5.730568 GCGTTTCTTCACTCACAAAATGTCT 60.731 40.000 0.00 0.00 0.00 3.41
171 172 6.258160 CGTTTCTTCACTCACAAAATGTCTT 58.742 36.000 0.00 0.00 0.00 3.01
172 173 6.195244 CGTTTCTTCACTCACAAAATGTCTTG 59.805 38.462 0.00 0.00 0.00 3.02
173 174 7.250569 GTTTCTTCACTCACAAAATGTCTTGA 58.749 34.615 0.00 0.00 0.00 3.02
174 175 7.572523 TTCTTCACTCACAAAATGTCTTGAT 57.427 32.000 0.00 0.00 0.00 2.57
175 176 7.572523 TCTTCACTCACAAAATGTCTTGATT 57.427 32.000 0.00 0.00 0.00 2.57
176 177 7.420002 TCTTCACTCACAAAATGTCTTGATTG 58.580 34.615 0.00 0.00 0.00 2.67
177 178 6.940831 TCACTCACAAAATGTCTTGATTGA 57.059 33.333 0.00 0.00 0.00 2.57
178 179 7.514784 TCACTCACAAAATGTCTTGATTGAT 57.485 32.000 0.00 0.00 0.00 2.57
179 180 7.364970 TCACTCACAAAATGTCTTGATTGATG 58.635 34.615 0.00 0.00 0.00 3.07
180 181 7.229106 TCACTCACAAAATGTCTTGATTGATGA 59.771 33.333 0.00 0.00 0.00 2.92
181 182 7.537649 CACTCACAAAATGTCTTGATTGATGAG 59.462 37.037 0.00 0.00 37.19 2.90
182 183 7.446319 ACTCACAAAATGTCTTGATTGATGAGA 59.554 33.333 16.37 0.00 36.10 3.27
183 184 8.344446 TCACAAAATGTCTTGATTGATGAGAT 57.656 30.769 0.00 0.00 0.00 2.75
184 185 8.799367 TCACAAAATGTCTTGATTGATGAGATT 58.201 29.630 0.00 0.00 0.00 2.40
185 186 9.419297 CACAAAATGTCTTGATTGATGAGATTT 57.581 29.630 0.00 0.00 34.80 2.17
186 187 9.635520 ACAAAATGTCTTGATTGATGAGATTTC 57.364 29.630 0.00 0.00 33.19 2.17
187 188 9.634163 CAAAATGTCTTGATTGATGAGATTTCA 57.366 29.630 0.00 0.00 33.19 2.69
188 189 9.856488 AAAATGTCTTGATTGATGAGATTTCAG 57.144 29.630 0.00 0.00 33.19 3.02
189 190 8.803397 AATGTCTTGATTGATGAGATTTCAGA 57.197 30.769 0.00 0.00 36.61 3.27
190 191 8.982091 ATGTCTTGATTGATGAGATTTCAGAT 57.018 30.769 0.00 0.00 36.61 2.90
191 192 8.803397 TGTCTTGATTGATGAGATTTCAGATT 57.197 30.769 0.00 0.00 36.61 2.40
192 193 9.239551 TGTCTTGATTGATGAGATTTCAGATTT 57.760 29.630 0.00 0.00 36.61 2.17
193 194 9.504710 GTCTTGATTGATGAGATTTCAGATTTG 57.495 33.333 0.00 0.00 36.61 2.32
194 195 9.457436 TCTTGATTGATGAGATTTCAGATTTGA 57.543 29.630 0.00 0.00 36.61 2.69
198 199 9.680315 GATTGATGAGATTTCAGATTTGAATCC 57.320 33.333 0.00 0.00 42.60 3.01
199 200 8.818622 TTGATGAGATTTCAGATTTGAATCCT 57.181 30.769 0.00 0.54 42.60 3.24
200 201 9.910267 TTGATGAGATTTCAGATTTGAATCCTA 57.090 29.630 0.00 0.00 42.60 2.94
201 202 9.334947 TGATGAGATTTCAGATTTGAATCCTAC 57.665 33.333 0.00 0.00 42.60 3.18
202 203 9.334947 GATGAGATTTCAGATTTGAATCCTACA 57.665 33.333 0.00 0.00 42.60 2.74
203 204 9.690913 ATGAGATTTCAGATTTGAATCCTACAA 57.309 29.630 0.00 0.00 42.60 2.41
204 205 9.519191 TGAGATTTCAGATTTGAATCCTACAAA 57.481 29.630 0.00 0.00 42.60 2.83
205 206 9.780413 GAGATTTCAGATTTGAATCCTACAAAC 57.220 33.333 0.00 0.00 42.60 2.93
206 207 8.743714 AGATTTCAGATTTGAATCCTACAAACC 58.256 33.333 0.00 0.00 42.60 3.27
207 208 7.831691 TTTCAGATTTGAATCCTACAAACCA 57.168 32.000 0.00 0.00 42.60 3.67
208 209 7.452880 TTCAGATTTGAATCCTACAAACCAG 57.547 36.000 0.00 0.00 38.37 4.00
209 210 6.778821 TCAGATTTGAATCCTACAAACCAGA 58.221 36.000 0.00 0.00 39.48 3.86
210 211 7.230747 TCAGATTTGAATCCTACAAACCAGAA 58.769 34.615 0.00 0.00 39.48 3.02
211 212 7.723616 TCAGATTTGAATCCTACAAACCAGAAA 59.276 33.333 0.00 0.00 39.48 2.52
212 213 8.359642 CAGATTTGAATCCTACAAACCAGAAAA 58.640 33.333 0.00 0.00 39.48 2.29
213 214 8.923270 AGATTTGAATCCTACAAACCAGAAAAA 58.077 29.630 0.00 0.00 39.48 1.94
259 260 3.822594 TTTGTCCATCGAAACGGATTG 57.177 42.857 5.05 0.00 32.83 2.67
269 270 2.280628 GAAACGGATTGGATCGAGCTT 58.719 47.619 0.00 0.00 0.00 3.74
270 271 1.941325 AACGGATTGGATCGAGCTTC 58.059 50.000 0.00 0.00 0.00 3.86
277 278 0.745486 TGGATCGAGCTTCCGACGTA 60.745 55.000 0.00 0.00 41.70 3.57
284 285 2.452105 GAGCTTCCGACGTAGATTGAC 58.548 52.381 0.00 0.00 0.00 3.18
294 295 2.792947 TAGATTGACGCCGGCTCCC 61.793 63.158 26.68 13.62 0.00 4.30
328 329 5.530519 AGCACAATACAGTACAATGAACG 57.469 39.130 0.00 0.00 0.00 3.95
332 333 5.563751 CACAATACAGTACAATGAACGCAAC 59.436 40.000 0.00 0.00 0.00 4.17
334 335 3.878086 ACAGTACAATGAACGCAACTG 57.122 42.857 0.00 0.00 40.08 3.16
353 354 6.407202 CAACTGGCAGAGGTAATTAACTACT 58.593 40.000 23.66 0.05 0.00 2.57
354 355 7.553334 CAACTGGCAGAGGTAATTAACTACTA 58.447 38.462 23.66 0.00 0.00 1.82
356 357 6.140303 TGGCAGAGGTAATTAACTACTACG 57.860 41.667 2.17 0.00 0.00 3.51
357 358 5.653769 TGGCAGAGGTAATTAACTACTACGT 59.346 40.000 2.17 0.00 0.00 3.57
358 359 5.975939 GGCAGAGGTAATTAACTACTACGTG 59.024 44.000 2.17 0.00 0.00 4.49
396 397 3.003689 CACTGTTTCCGCTTCACAAGAAT 59.996 43.478 0.00 0.00 32.31 2.40
440 453 2.109128 TCCACCCACTTGGAATTGCTAA 59.891 45.455 0.00 0.00 43.04 3.09
446 459 2.084546 ACTTGGAATTGCTAACGAGGC 58.915 47.619 0.00 0.00 0.00 4.70
447 460 2.083774 CTTGGAATTGCTAACGAGGCA 58.916 47.619 0.00 0.00 37.97 4.75
465 478 4.387598 AGGCAAGTGATCAATCATAGAGC 58.612 43.478 0.00 0.00 39.30 4.09
503 516 8.722480 AAGGATTTTGCCTTGATTTTATTAGC 57.278 30.769 0.00 0.00 46.25 3.09
504 517 7.850193 AGGATTTTGCCTTGATTTTATTAGCA 58.150 30.769 0.00 0.00 33.46 3.49
505 518 7.765819 AGGATTTTGCCTTGATTTTATTAGCAC 59.234 33.333 0.00 0.00 33.46 4.40
506 519 7.765819 GGATTTTGCCTTGATTTTATTAGCACT 59.234 33.333 0.00 0.00 0.00 4.40
508 521 9.807649 ATTTTGCCTTGATTTTATTAGCACTAG 57.192 29.630 0.00 0.00 0.00 2.57
509 522 6.377327 TGCCTTGATTTTATTAGCACTAGC 57.623 37.500 0.00 0.00 42.56 3.42
510 523 5.885352 TGCCTTGATTTTATTAGCACTAGCA 59.115 36.000 0.00 0.00 45.49 3.49
511 524 6.038603 TGCCTTGATTTTATTAGCACTAGCAG 59.961 38.462 0.00 0.00 45.49 4.24
512 525 6.038714 GCCTTGATTTTATTAGCACTAGCAGT 59.961 38.462 0.00 0.00 45.49 4.40
513 526 7.226720 GCCTTGATTTTATTAGCACTAGCAGTA 59.773 37.037 0.00 0.00 45.49 2.74
514 527 9.277783 CCTTGATTTTATTAGCACTAGCAGTAT 57.722 33.333 0.00 0.00 45.49 2.12
558 571 4.899239 CGTCGCCCTCATCCTGCC 62.899 72.222 0.00 0.00 0.00 4.85
568 581 4.241555 ATCCTGCCATCCCGTCGC 62.242 66.667 0.00 0.00 0.00 5.19
611 632 1.079266 GTGCCAGTGCCAGAGAGAG 60.079 63.158 0.00 0.00 36.33 3.20
612 633 1.228988 TGCCAGTGCCAGAGAGAGA 60.229 57.895 0.00 0.00 36.33 3.10
623 644 2.575532 CAGAGAGAGAGACAGGCCTAG 58.424 57.143 3.98 2.19 0.00 3.02
714 735 1.671054 CCGCCCCGATCGCATTAAT 60.671 57.895 10.32 0.00 0.00 1.40
771 792 2.625823 CCATGTTCGCCACCACCAC 61.626 63.158 0.00 0.00 0.00 4.16
834 858 2.027897 GCACCCACGTCACGTACA 59.972 61.111 0.41 0.00 38.32 2.90
835 859 2.305127 GCACCCACGTCACGTACAC 61.305 63.158 0.41 0.00 38.32 2.90
896 923 1.746517 CGCCTATATATCCCGCCCC 59.253 63.158 0.00 0.00 0.00 5.80
938 971 2.047844 CACTGCCACACTCCCTCG 60.048 66.667 0.00 0.00 0.00 4.63
958 991 2.262915 CTCGCCAGTCACCACCTC 59.737 66.667 0.00 0.00 0.00 3.85
959 992 3.633094 CTCGCCAGTCACCACCTCG 62.633 68.421 0.00 0.00 0.00 4.63
965 998 2.257676 GTCACCACCTCGACCGAC 59.742 66.667 0.00 0.00 0.00 4.79
966 999 3.359523 TCACCACCTCGACCGACG 61.360 66.667 0.00 0.00 44.09 5.12
969 1002 4.778415 CCACCTCGACCGACGCAG 62.778 72.222 0.00 0.00 42.26 5.18
2101 2161 2.738139 CGACCATGACGCTGCACA 60.738 61.111 0.00 0.00 0.00 4.57
2388 2448 4.871822 CCTTCCCATTCTAACCTCCAATT 58.128 43.478 0.00 0.00 0.00 2.32
2389 2449 5.633854 GCCTTCCCATTCTAACCTCCAATTA 60.634 44.000 0.00 0.00 0.00 1.40
2391 2451 6.717084 CCTTCCCATTCTAACCTCCAATTATC 59.283 42.308 0.00 0.00 0.00 1.75
2489 2550 2.241176 CAAGGGGGTATGTGTATGGTGT 59.759 50.000 0.00 0.00 0.00 4.16
2520 2586 4.448005 TCGTTTACGATTTTTCTGTTCGC 58.552 39.130 0.03 0.00 44.22 4.70
2523 2589 0.879090 ACGATTTTTCTGTTCGCCCC 59.121 50.000 0.00 0.00 36.37 5.80
2561 2631 9.767228 TTTACACTTGTAAATAGTTAGTCTGCA 57.233 29.630 9.95 0.00 43.28 4.41
2562 2632 9.938280 TTACACTTGTAAATAGTTAGTCTGCAT 57.062 29.630 0.00 0.00 37.54 3.96
2581 2651 9.222916 GTCTGCATATATATGTGTATGTACGAC 57.777 37.037 21.10 11.51 36.11 4.34
2673 2745 4.882671 AGTAAAAACAGAGTGTGCACAG 57.117 40.909 22.40 11.29 0.00 3.66
2687 2761 3.843999 GTGCACAGGAAAAGTGAACAAA 58.156 40.909 13.17 0.00 43.59 2.83
2693 2767 4.053295 CAGGAAAAGTGAACAAAGGCATG 58.947 43.478 0.00 0.00 0.00 4.06
2694 2768 3.960102 AGGAAAAGTGAACAAAGGCATGA 59.040 39.130 0.00 0.00 0.00 3.07
2709 2793 9.423061 ACAAAGGCATGAATATTTGTTACTTTC 57.577 29.630 0.00 0.00 41.73 2.62
2711 2795 9.643693 AAAGGCATGAATATTTGTTACTTTCTG 57.356 29.630 0.00 0.00 0.00 3.02
2712 2796 8.579850 AGGCATGAATATTTGTTACTTTCTGA 57.420 30.769 0.00 0.00 0.00 3.27
2731 2828 6.817765 TCTGATTTTAGATGGGTCAACAAC 57.182 37.500 0.00 0.00 0.00 3.32
2746 2843 5.179555 GGTCAACAACCTGTATTGAGACTTC 59.820 44.000 12.13 0.00 45.45 3.01
2851 4410 5.296813 ACTTCATACGAATTTGAACCTGC 57.703 39.130 0.00 0.00 0.00 4.85
2854 4413 5.295431 TCATACGAATTTGAACCTGCAAG 57.705 39.130 0.00 0.00 0.00 4.01
2859 4418 3.730715 CGAATTTGAACCTGCAAGTGTTC 59.269 43.478 13.64 13.64 41.49 3.18
2877 4436 4.030529 GTGTTCATGTCGCAAATTGCATAC 59.969 41.667 18.65 14.90 45.36 2.39
2878 4437 4.082841 TGTTCATGTCGCAAATTGCATACT 60.083 37.500 18.65 3.35 45.36 2.12
2879 4438 4.277257 TCATGTCGCAAATTGCATACTC 57.723 40.909 18.65 3.74 45.36 2.59
2885 4444 4.496895 GTCGCAAATTGCATACTCATGTTC 59.503 41.667 18.65 0.00 45.36 3.18
2886 4445 3.792956 CGCAAATTGCATACTCATGTTCC 59.207 43.478 18.65 0.00 45.36 3.62
2887 4446 4.674885 CGCAAATTGCATACTCATGTTCCA 60.675 41.667 18.65 0.00 45.36 3.53
2891 4450 7.148373 GCAAATTGCATACTCATGTTCCAATTT 60.148 33.333 13.73 0.00 44.26 1.82
2892 4451 7.837202 AATTGCATACTCATGTTCCAATTTG 57.163 32.000 0.00 0.00 34.40 2.32
2894 4453 6.343716 TGCATACTCATGTTCCAATTTGTT 57.656 33.333 0.00 0.00 34.40 2.83
2895 4454 6.389091 TGCATACTCATGTTCCAATTTGTTC 58.611 36.000 0.00 0.00 34.40 3.18
2897 4456 6.867816 GCATACTCATGTTCCAATTTGTTCAA 59.132 34.615 0.00 0.00 34.40 2.69
2898 4457 7.384660 GCATACTCATGTTCCAATTTGTTCAAA 59.615 33.333 0.44 0.44 34.40 2.69
2899 4458 9.258826 CATACTCATGTTCCAATTTGTTCAAAA 57.741 29.630 2.11 0.00 0.00 2.44
2900 4459 7.538303 ACTCATGTTCCAATTTGTTCAAAAC 57.462 32.000 2.11 0.00 0.00 2.43
2901 4460 7.102346 ACTCATGTTCCAATTTGTTCAAAACA 58.898 30.769 2.11 2.85 40.21 2.83
2903 4462 7.102346 TCATGTTCCAATTTGTTCAAAACACT 58.898 30.769 2.11 0.00 41.97 3.55
2907 4466 7.872993 TGTTCCAATTTGTTCAAAACACTTACA 59.127 29.630 2.11 1.76 41.97 2.41
2908 4467 8.878769 GTTCCAATTTGTTCAAAACACTTACAT 58.121 29.630 2.11 0.00 41.97 2.29
2909 4468 8.417780 TCCAATTTGTTCAAAACACTTACATG 57.582 30.769 2.11 0.00 41.97 3.21
2910 4469 8.037758 TCCAATTTGTTCAAAACACTTACATGT 58.962 29.630 2.69 2.69 41.97 3.21
2911 4470 9.307121 CCAATTTGTTCAAAACACTTACATGTA 57.693 29.630 0.08 0.08 41.97 2.29
2925 4484 9.278978 ACACTTACATGTATATTGTTGTGAACA 57.721 29.630 6.36 0.00 40.21 3.18
2958 4517 8.786826 AATTTGTCTACTTCATACGGATTTGA 57.213 30.769 0.00 0.00 0.00 2.69
2959 4518 8.786826 ATTTGTCTACTTCATACGGATTTGAA 57.213 30.769 0.00 0.00 0.00 2.69
2960 4519 7.591006 TTGTCTACTTCATACGGATTTGAAC 57.409 36.000 0.00 0.00 0.00 3.18
2961 4520 6.103997 TGTCTACTTCATACGGATTTGAACC 58.896 40.000 0.00 0.00 0.00 3.62
2962 4521 6.070995 TGTCTACTTCATACGGATTTGAACCT 60.071 38.462 0.00 0.00 0.00 3.50
2963 4522 6.817140 GTCTACTTCATACGGATTTGAACCTT 59.183 38.462 0.00 0.00 0.00 3.50
2964 4523 7.333672 GTCTACTTCATACGGATTTGAACCTTT 59.666 37.037 0.00 0.00 0.00 3.11
2965 4524 8.533657 TCTACTTCATACGGATTTGAACCTTTA 58.466 33.333 0.00 0.00 0.00 1.85
2966 4525 7.989416 ACTTCATACGGATTTGAACCTTTAA 57.011 32.000 0.00 0.00 0.00 1.52
2967 4526 8.575649 ACTTCATACGGATTTGAACCTTTAAT 57.424 30.769 0.00 0.00 0.00 1.40
2968 4527 8.458843 ACTTCATACGGATTTGAACCTTTAATG 58.541 33.333 0.00 0.00 0.00 1.90
2969 4528 7.931578 TCATACGGATTTGAACCTTTAATGT 57.068 32.000 0.00 0.00 0.00 2.71
2970 4529 8.343168 TCATACGGATTTGAACCTTTAATGTT 57.657 30.769 0.00 0.00 0.00 2.71
2971 4530 8.798402 TCATACGGATTTGAACCTTTAATGTTT 58.202 29.630 0.00 0.00 0.00 2.83
2972 4531 9.072294 CATACGGATTTGAACCTTTAATGTTTC 57.928 33.333 0.00 0.00 0.00 2.78
2973 4532 7.284919 ACGGATTTGAACCTTTAATGTTTCT 57.715 32.000 1.33 0.00 0.00 2.52
2974 4533 7.722363 ACGGATTTGAACCTTTAATGTTTCTT 58.278 30.769 1.33 0.00 0.00 2.52
2975 4534 8.852135 ACGGATTTGAACCTTTAATGTTTCTTA 58.148 29.630 1.33 0.00 0.00 2.10
2976 4535 9.124807 CGGATTTGAACCTTTAATGTTTCTTAC 57.875 33.333 1.33 0.00 0.00 2.34
2977 4536 9.974980 GGATTTGAACCTTTAATGTTTCTTACA 57.025 29.630 1.33 0.00 41.97 2.41
2981 4540 9.959749 TTGAACCTTTAATGTTTCTTACACATC 57.040 29.630 1.33 0.00 40.19 3.06
2982 4541 8.286800 TGAACCTTTAATGTTTCTTACACATCG 58.713 33.333 1.33 0.00 40.19 3.84
2983 4542 6.608610 ACCTTTAATGTTTCTTACACATCGC 58.391 36.000 0.00 0.00 40.19 4.58
2984 4543 6.027749 CCTTTAATGTTTCTTACACATCGCC 58.972 40.000 0.00 0.00 40.19 5.54
2985 4544 3.740044 AATGTTTCTTACACATCGCCG 57.260 42.857 0.00 0.00 40.19 6.46
2986 4545 1.434555 TGTTTCTTACACATCGCCGG 58.565 50.000 0.00 0.00 0.00 6.13
2987 4546 1.270412 TGTTTCTTACACATCGCCGGT 60.270 47.619 1.90 0.00 0.00 5.28
2988 4547 2.029200 TGTTTCTTACACATCGCCGGTA 60.029 45.455 1.90 0.00 0.00 4.02
2989 4548 2.572191 TTCTTACACATCGCCGGTAG 57.428 50.000 1.90 0.00 0.00 3.18
2992 4551 1.677576 CTTACACATCGCCGGTAGGTA 59.322 52.381 1.90 0.00 40.50 3.08
3002 4561 2.798283 CGCCGGTAGGTATATTGTTGTG 59.202 50.000 1.90 0.00 40.50 3.33
3085 4646 8.897752 AGTCTTATATGAAAAATCAGCAAGGAC 58.102 33.333 0.00 0.00 0.00 3.85
3094 4656 8.296713 TGAAAAATCAGCAAGGACATTTAGTAC 58.703 33.333 0.00 0.00 0.00 2.73
3123 4685 8.068977 GCATATTTGTGCAAAATTTGACTTTGA 58.931 29.630 10.26 0.00 44.43 2.69
3127 4689 7.754069 TTGTGCAAAATTTGACTTTGAGTAG 57.246 32.000 10.26 0.00 36.12 2.57
3147 6372 2.036217 AGGAAACGTCGTACACCATGAA 59.964 45.455 0.00 0.00 0.00 2.57
3156 6381 6.369340 ACGTCGTACACCATGAATGATTTTAA 59.631 34.615 0.00 0.00 0.00 1.52
3178 9280 0.395311 TCACTACCTAGCCCACGAGG 60.395 60.000 0.00 0.00 43.88 4.63
3214 9316 9.856162 TCCCAATTATTACTAATAAGGACAACC 57.144 33.333 7.22 0.00 36.83 3.77
3215 9317 9.635404 CCCAATTATTACTAATAAGGACAACCA 57.365 33.333 7.22 0.00 36.83 3.67
3238 9340 5.824904 ACTAAACATGCATGACAAGGATC 57.175 39.130 32.75 0.00 0.00 3.36
3281 9385 6.682861 GCATAATGGGAAATGTGGAAGGTAAC 60.683 42.308 0.00 0.00 0.00 2.50
3318 11694 9.590088 CTACAACATTCATGATAAATGTCATCG 57.410 33.333 11.06 4.78 44.44 3.84
3319 11695 6.914215 ACAACATTCATGATAAATGTCATCGC 59.086 34.615 11.06 0.00 44.44 4.58
3324 11700 2.479837 TGATAAATGTCATCGCCCGTC 58.520 47.619 0.00 0.00 0.00 4.79
3345 11721 5.347635 CGTCGATTTTCTCAACTACCAATCA 59.652 40.000 0.00 0.00 0.00 2.57
3346 11722 6.454318 CGTCGATTTTCTCAACTACCAATCAG 60.454 42.308 0.00 0.00 0.00 2.90
3347 11723 6.369065 GTCGATTTTCTCAACTACCAATCAGT 59.631 38.462 0.00 0.00 0.00 3.41
3348 11724 7.544566 GTCGATTTTCTCAACTACCAATCAGTA 59.455 37.037 0.00 0.00 0.00 2.74
3349 11725 8.258007 TCGATTTTCTCAACTACCAATCAGTAT 58.742 33.333 0.00 0.00 0.00 2.12
3350 11726 9.529325 CGATTTTCTCAACTACCAATCAGTATA 57.471 33.333 0.00 0.00 0.00 1.47
3354 11730 8.718102 TTCTCAACTACCAATCAGTATAAAGC 57.282 34.615 0.00 0.00 0.00 3.51
3355 11731 7.847096 TCTCAACTACCAATCAGTATAAAGCA 58.153 34.615 0.00 0.00 0.00 3.91
3356 11732 8.318412 TCTCAACTACCAATCAGTATAAAGCAA 58.682 33.333 0.00 0.00 0.00 3.91
3357 11733 8.492673 TCAACTACCAATCAGTATAAAGCAAG 57.507 34.615 0.00 0.00 0.00 4.01
3358 11734 8.100791 TCAACTACCAATCAGTATAAAGCAAGT 58.899 33.333 0.00 0.00 0.00 3.16
3359 11735 8.391106 CAACTACCAATCAGTATAAAGCAAGTC 58.609 37.037 0.00 0.00 0.00 3.01
3360 11736 7.852263 ACTACCAATCAGTATAAAGCAAGTCT 58.148 34.615 0.00 0.00 0.00 3.24
3361 11737 7.982354 ACTACCAATCAGTATAAAGCAAGTCTC 59.018 37.037 0.00 0.00 0.00 3.36
3362 11738 6.116126 ACCAATCAGTATAAAGCAAGTCTCC 58.884 40.000 0.00 0.00 0.00 3.71
3363 11739 6.069963 ACCAATCAGTATAAAGCAAGTCTCCT 60.070 38.462 0.00 0.00 0.00 3.69
3364 11740 6.259608 CCAATCAGTATAAAGCAAGTCTCCTG 59.740 42.308 0.00 0.00 0.00 3.86
3365 11741 6.552445 ATCAGTATAAAGCAAGTCTCCTGT 57.448 37.500 0.00 0.00 0.00 4.00
3366 11742 5.724328 TCAGTATAAAGCAAGTCTCCTGTG 58.276 41.667 0.00 0.00 0.00 3.66
3367 11743 5.246203 TCAGTATAAAGCAAGTCTCCTGTGT 59.754 40.000 0.00 0.00 0.00 3.72
3368 11744 5.934625 CAGTATAAAGCAAGTCTCCTGTGTT 59.065 40.000 0.00 0.00 0.00 3.32
3369 11745 7.039293 TCAGTATAAAGCAAGTCTCCTGTGTTA 60.039 37.037 0.00 0.00 0.00 2.41
3370 11746 7.602644 CAGTATAAAGCAAGTCTCCTGTGTTAA 59.397 37.037 0.00 0.00 0.00 2.01
3371 11747 8.322091 AGTATAAAGCAAGTCTCCTGTGTTAAT 58.678 33.333 0.00 0.00 0.00 1.40
3372 11748 5.695851 AAAGCAAGTCTCCTGTGTTAATG 57.304 39.130 0.00 0.00 0.00 1.90
3373 11749 4.357918 AGCAAGTCTCCTGTGTTAATGT 57.642 40.909 0.00 0.00 0.00 2.71
3374 11750 4.319177 AGCAAGTCTCCTGTGTTAATGTC 58.681 43.478 0.00 0.00 0.00 3.06
3375 11751 3.437049 GCAAGTCTCCTGTGTTAATGTCC 59.563 47.826 0.00 0.00 0.00 4.02
3376 11752 4.641396 CAAGTCTCCTGTGTTAATGTCCA 58.359 43.478 0.00 0.00 0.00 4.02
3377 11753 4.543590 AGTCTCCTGTGTTAATGTCCAG 57.456 45.455 0.00 0.00 0.00 3.86
3378 11754 4.160329 AGTCTCCTGTGTTAATGTCCAGA 58.840 43.478 0.00 0.00 0.00 3.86
3379 11755 4.221703 AGTCTCCTGTGTTAATGTCCAGAG 59.778 45.833 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.284693 GTGTTCTTTTTAATTCTTGCATGCAAT 58.715 29.630 31.96 20.06 35.20 3.56
8 9 7.279536 TGTGTTCTTTTTAATTCTTGCATGCAA 59.720 29.630 30.12 30.12 0.00 4.08
9 10 6.760298 TGTGTTCTTTTTAATTCTTGCATGCA 59.240 30.769 18.46 18.46 0.00 3.96
10 11 7.065283 GTGTGTTCTTTTTAATTCTTGCATGC 58.935 34.615 11.82 11.82 0.00 4.06
11 12 7.224362 TGGTGTGTTCTTTTTAATTCTTGCATG 59.776 33.333 0.00 0.00 0.00 4.06
12 13 7.271511 TGGTGTGTTCTTTTTAATTCTTGCAT 58.728 30.769 0.00 0.00 0.00 3.96
13 14 6.634805 TGGTGTGTTCTTTTTAATTCTTGCA 58.365 32.000 0.00 0.00 0.00 4.08
14 15 7.532682 TTGGTGTGTTCTTTTTAATTCTTGC 57.467 32.000 0.00 0.00 0.00 4.01
15 16 8.063630 GCATTGGTGTGTTCTTTTTAATTCTTG 58.936 33.333 0.00 0.00 0.00 3.02
16 17 7.768120 TGCATTGGTGTGTTCTTTTTAATTCTT 59.232 29.630 0.00 0.00 0.00 2.52
17 18 7.271511 TGCATTGGTGTGTTCTTTTTAATTCT 58.728 30.769 0.00 0.00 0.00 2.40
18 19 7.475771 TGCATTGGTGTGTTCTTTTTAATTC 57.524 32.000 0.00 0.00 0.00 2.17
19 20 7.498570 ACATGCATTGGTGTGTTCTTTTTAATT 59.501 29.630 0.00 0.00 0.00 1.40
20 21 6.991531 ACATGCATTGGTGTGTTCTTTTTAAT 59.008 30.769 0.00 0.00 0.00 1.40
21 22 6.344500 ACATGCATTGGTGTGTTCTTTTTAA 58.656 32.000 0.00 0.00 0.00 1.52
22 23 5.911752 ACATGCATTGGTGTGTTCTTTTTA 58.088 33.333 0.00 0.00 0.00 1.52
23 24 4.768583 ACATGCATTGGTGTGTTCTTTTT 58.231 34.783 0.00 0.00 0.00 1.94
24 25 4.405116 ACATGCATTGGTGTGTTCTTTT 57.595 36.364 0.00 0.00 0.00 2.27
25 26 5.528043 TTACATGCATTGGTGTGTTCTTT 57.472 34.783 0.00 0.00 0.00 2.52
26 27 5.726980 ATTACATGCATTGGTGTGTTCTT 57.273 34.783 0.00 0.00 0.00 2.52
27 28 7.408756 AATATTACATGCATTGGTGTGTTCT 57.591 32.000 0.00 0.00 0.00 3.01
28 29 7.975616 AGAAATATTACATGCATTGGTGTGTTC 59.024 33.333 0.00 0.00 0.00 3.18
29 30 7.839907 AGAAATATTACATGCATTGGTGTGTT 58.160 30.769 0.00 0.00 0.00 3.32
30 31 7.408756 AGAAATATTACATGCATTGGTGTGT 57.591 32.000 0.00 0.00 0.00 3.72
31 32 9.616634 GATAGAAATATTACATGCATTGGTGTG 57.383 33.333 0.00 0.00 0.00 3.82
32 33 8.796475 GGATAGAAATATTACATGCATTGGTGT 58.204 33.333 0.00 0.00 0.00 4.16
33 34 8.795513 TGGATAGAAATATTACATGCATTGGTG 58.204 33.333 0.00 0.00 0.00 4.17
34 35 8.938801 TGGATAGAAATATTACATGCATTGGT 57.061 30.769 0.00 0.00 0.00 3.67
58 59 0.666913 GCATGCTTGGCCACTAGATG 59.333 55.000 3.88 6.90 0.00 2.90
59 60 0.256752 TGCATGCTTGGCCACTAGAT 59.743 50.000 20.33 0.00 0.00 1.98
60 61 0.256752 ATGCATGCTTGGCCACTAGA 59.743 50.000 20.33 0.00 0.00 2.43
61 62 0.384309 CATGCATGCTTGGCCACTAG 59.616 55.000 22.49 1.27 0.00 2.57
62 63 2.495809 CATGCATGCTTGGCCACTA 58.504 52.632 22.49 0.00 0.00 2.74
63 64 3.294750 CATGCATGCTTGGCCACT 58.705 55.556 22.49 0.00 0.00 4.00
102 103 9.672673 ACTACTACTCAAGTTAAATTCATGCAT 57.327 29.630 0.00 0.00 39.80 3.96
103 104 9.502091 AACTACTACTCAAGTTAAATTCATGCA 57.498 29.630 0.00 0.00 39.80 3.96
140 141 2.091277 GTGAGTGAAGAAACGCATCTCG 59.909 50.000 0.00 0.00 45.38 4.04
141 142 3.059884 TGTGAGTGAAGAAACGCATCTC 58.940 45.455 0.00 0.00 32.35 2.75
142 143 3.111853 TGTGAGTGAAGAAACGCATCT 57.888 42.857 0.00 0.00 32.35 2.90
143 144 3.878086 TTGTGAGTGAAGAAACGCATC 57.122 42.857 0.00 0.00 32.35 3.91
144 145 4.630894 TTTTGTGAGTGAAGAAACGCAT 57.369 36.364 0.00 0.00 32.35 4.73
145 146 4.142491 ACATTTTGTGAGTGAAGAAACGCA 60.142 37.500 0.00 0.00 0.00 5.24
146 147 4.351192 ACATTTTGTGAGTGAAGAAACGC 58.649 39.130 0.00 0.00 0.00 4.84
147 148 5.810525 AGACATTTTGTGAGTGAAGAAACG 58.189 37.500 0.00 0.00 0.00 3.60
148 149 7.250569 TCAAGACATTTTGTGAGTGAAGAAAC 58.749 34.615 0.00 0.00 0.00 2.78
149 150 7.389803 TCAAGACATTTTGTGAGTGAAGAAA 57.610 32.000 0.00 0.00 0.00 2.52
150 151 7.572523 ATCAAGACATTTTGTGAGTGAAGAA 57.427 32.000 0.00 0.00 0.00 2.52
151 152 7.282901 TCAATCAAGACATTTTGTGAGTGAAGA 59.717 33.333 0.65 0.00 40.82 2.87
152 153 7.420002 TCAATCAAGACATTTTGTGAGTGAAG 58.580 34.615 0.65 0.00 40.82 3.02
153 154 7.332213 TCAATCAAGACATTTTGTGAGTGAA 57.668 32.000 0.65 0.00 40.82 3.18
154 155 6.940831 TCAATCAAGACATTTTGTGAGTGA 57.059 33.333 0.00 0.00 41.31 3.41
155 156 7.364970 TCATCAATCAAGACATTTTGTGAGTG 58.635 34.615 0.00 0.00 37.41 3.51
156 157 7.446319 TCTCATCAATCAAGACATTTTGTGAGT 59.554 33.333 0.00 0.00 33.68 3.41
157 158 7.813645 TCTCATCAATCAAGACATTTTGTGAG 58.186 34.615 0.00 0.00 33.49 3.51
158 159 7.748691 TCTCATCAATCAAGACATTTTGTGA 57.251 32.000 0.00 0.00 0.00 3.58
159 160 8.981724 AATCTCATCAATCAAGACATTTTGTG 57.018 30.769 0.00 0.00 0.00 3.33
160 161 9.635520 GAAATCTCATCAATCAAGACATTTTGT 57.364 29.630 0.00 0.00 0.00 2.83
161 162 9.634163 TGAAATCTCATCAATCAAGACATTTTG 57.366 29.630 0.00 0.00 0.00 2.44
162 163 9.856488 CTGAAATCTCATCAATCAAGACATTTT 57.144 29.630 0.00 0.00 0.00 1.82
163 164 9.239551 TCTGAAATCTCATCAATCAAGACATTT 57.760 29.630 0.00 0.00 0.00 2.32
164 165 8.803397 TCTGAAATCTCATCAATCAAGACATT 57.197 30.769 0.00 0.00 0.00 2.71
165 166 8.982091 ATCTGAAATCTCATCAATCAAGACAT 57.018 30.769 0.00 0.00 0.00 3.06
166 167 8.803397 AATCTGAAATCTCATCAATCAAGACA 57.197 30.769 0.00 0.00 0.00 3.41
167 168 9.504710 CAAATCTGAAATCTCATCAATCAAGAC 57.495 33.333 0.00 0.00 0.00 3.01
168 169 9.457436 TCAAATCTGAAATCTCATCAATCAAGA 57.543 29.630 0.00 0.00 0.00 3.02
172 173 9.680315 GGATTCAAATCTGAAATCTCATCAATC 57.320 33.333 2.96 0.00 44.64 2.67
173 174 9.422681 AGGATTCAAATCTGAAATCTCATCAAT 57.577 29.630 2.96 0.00 44.64 2.57
174 175 8.818622 AGGATTCAAATCTGAAATCTCATCAA 57.181 30.769 2.96 0.00 44.64 2.57
175 176 9.334947 GTAGGATTCAAATCTGAAATCTCATCA 57.665 33.333 2.96 0.00 44.64 3.07
176 177 9.334947 TGTAGGATTCAAATCTGAAATCTCATC 57.665 33.333 2.96 0.00 44.64 2.92
177 178 9.690913 TTGTAGGATTCAAATCTGAAATCTCAT 57.309 29.630 2.96 0.00 44.64 2.90
178 179 9.519191 TTTGTAGGATTCAAATCTGAAATCTCA 57.481 29.630 2.96 0.00 44.64 3.27
179 180 9.780413 GTTTGTAGGATTCAAATCTGAAATCTC 57.220 33.333 2.96 0.00 44.64 2.75
180 181 8.743714 GGTTTGTAGGATTCAAATCTGAAATCT 58.256 33.333 2.96 0.00 44.64 2.40
181 182 8.522830 TGGTTTGTAGGATTCAAATCTGAAATC 58.477 33.333 2.96 0.00 44.64 2.17
182 183 8.421249 TGGTTTGTAGGATTCAAATCTGAAAT 57.579 30.769 2.96 0.00 44.64 2.17
183 184 7.723616 TCTGGTTTGTAGGATTCAAATCTGAAA 59.276 33.333 8.12 0.00 44.64 2.69
184 185 7.230747 TCTGGTTTGTAGGATTCAAATCTGAA 58.769 34.615 8.12 0.00 45.53 3.02
185 186 6.778821 TCTGGTTTGTAGGATTCAAATCTGA 58.221 36.000 2.96 6.98 39.58 3.27
186 187 7.452880 TTCTGGTTTGTAGGATTCAAATCTG 57.547 36.000 2.96 0.00 36.99 2.90
187 188 8.477419 TTTTCTGGTTTGTAGGATTCAAATCT 57.523 30.769 2.96 0.00 36.99 2.40
223 224 9.542462 CGATGGACAAATTTAAGTAGGATCTAA 57.458 33.333 0.00 0.00 0.00 2.10
224 225 8.920174 TCGATGGACAAATTTAAGTAGGATCTA 58.080 33.333 0.00 0.00 0.00 1.98
225 226 7.792032 TCGATGGACAAATTTAAGTAGGATCT 58.208 34.615 0.00 0.00 0.00 2.75
240 241 2.080693 CCAATCCGTTTCGATGGACAA 58.919 47.619 3.93 0.00 37.02 3.18
241 242 1.276705 TCCAATCCGTTTCGATGGACA 59.723 47.619 3.93 0.00 37.02 4.02
242 243 2.018542 TCCAATCCGTTTCGATGGAC 57.981 50.000 3.93 0.00 37.02 4.02
259 260 0.041135 CTACGTCGGAAGCTCGATCC 60.041 60.000 0.45 0.00 41.40 3.36
269 270 1.430632 GGCGTCAATCTACGTCGGA 59.569 57.895 0.00 0.00 44.64 4.55
270 271 3.993103 GGCGTCAATCTACGTCGG 58.007 61.111 0.00 0.00 44.64 4.79
277 278 4.162690 GGGAGCCGGCGTCAATCT 62.163 66.667 23.20 0.00 0.00 2.40
310 311 5.790003 CAGTTGCGTTCATTGTACTGTATTG 59.210 40.000 0.00 0.00 0.00 1.90
311 312 5.106712 CCAGTTGCGTTCATTGTACTGTATT 60.107 40.000 0.00 0.00 33.04 1.89
312 313 4.391830 CCAGTTGCGTTCATTGTACTGTAT 59.608 41.667 0.00 0.00 33.04 2.29
313 314 3.743911 CCAGTTGCGTTCATTGTACTGTA 59.256 43.478 0.00 0.00 33.04 2.74
314 315 2.548057 CCAGTTGCGTTCATTGTACTGT 59.452 45.455 0.00 0.00 33.04 3.55
315 316 2.665519 GCCAGTTGCGTTCATTGTACTG 60.666 50.000 0.00 0.00 34.32 2.74
316 317 1.535462 GCCAGTTGCGTTCATTGTACT 59.465 47.619 0.00 0.00 0.00 2.73
317 318 1.265635 TGCCAGTTGCGTTCATTGTAC 59.734 47.619 0.00 0.00 45.60 2.90
318 319 1.535028 CTGCCAGTTGCGTTCATTGTA 59.465 47.619 0.00 0.00 45.60 2.41
319 320 0.311790 CTGCCAGTTGCGTTCATTGT 59.688 50.000 0.00 0.00 45.60 2.71
320 321 0.592637 TCTGCCAGTTGCGTTCATTG 59.407 50.000 0.00 0.00 45.60 2.82
321 322 0.877071 CTCTGCCAGTTGCGTTCATT 59.123 50.000 0.00 0.00 45.60 2.57
328 329 4.010349 AGTTAATTACCTCTGCCAGTTGC 58.990 43.478 0.00 0.00 41.77 4.17
332 333 6.183360 ACGTAGTAGTTAATTACCTCTGCCAG 60.183 42.308 4.64 0.00 41.94 4.85
334 335 5.975939 CACGTAGTAGTTAATTACCTCTGCC 59.024 44.000 4.64 0.00 41.61 4.85
356 357 0.886043 TGACTGTCAGGTGCATGCAC 60.886 55.000 37.29 37.29 45.49 4.57
357 358 0.886043 GTGACTGTCAGGTGCATGCA 60.886 55.000 18.46 18.46 0.00 3.96
358 359 0.604780 AGTGACTGTCAGGTGCATGC 60.605 55.000 11.82 11.82 0.00 4.06
396 397 1.069090 GTCGACTGTTGAGTGGCCA 59.931 57.895 8.70 0.00 30.16 5.36
423 424 2.420022 CTCGTTAGCAATTCCAAGTGGG 59.580 50.000 0.00 0.00 35.41 4.61
440 453 2.768253 TGATTGATCACTTGCCTCGT 57.232 45.000 0.00 0.00 0.00 4.18
446 459 4.807834 ACACGCTCTATGATTGATCACTTG 59.192 41.667 0.00 0.00 40.03 3.16
447 460 5.016051 ACACGCTCTATGATTGATCACTT 57.984 39.130 0.00 0.00 40.03 3.16
465 478 4.282068 CAAAATCCTTGTGAGTTGACACG 58.718 43.478 0.00 0.00 42.86 4.49
498 511 7.262772 TGTTTTCGTATACTGCTAGTGCTAAT 58.737 34.615 0.56 0.00 40.48 1.73
500 513 6.198650 TGTTTTCGTATACTGCTAGTGCTA 57.801 37.500 0.56 0.00 40.48 3.49
502 515 4.267928 CCTGTTTTCGTATACTGCTAGTGC 59.732 45.833 0.56 0.00 40.20 4.40
503 516 4.804139 CCCTGTTTTCGTATACTGCTAGTG 59.196 45.833 0.56 0.00 0.00 2.74
504 517 4.142004 CCCCTGTTTTCGTATACTGCTAGT 60.142 45.833 0.56 0.00 0.00 2.57
505 518 4.098960 TCCCCTGTTTTCGTATACTGCTAG 59.901 45.833 0.56 0.00 0.00 3.42
506 519 4.025360 TCCCCTGTTTTCGTATACTGCTA 58.975 43.478 0.56 0.00 0.00 3.49
508 521 2.934553 GTCCCCTGTTTTCGTATACTGC 59.065 50.000 0.56 0.00 0.00 4.40
509 522 3.930848 GTGTCCCCTGTTTTCGTATACTG 59.069 47.826 0.56 0.00 0.00 2.74
510 523 3.055602 GGTGTCCCCTGTTTTCGTATACT 60.056 47.826 0.56 0.00 0.00 2.12
511 524 3.264947 GGTGTCCCCTGTTTTCGTATAC 58.735 50.000 0.00 0.00 0.00 1.47
512 525 2.094078 CGGTGTCCCCTGTTTTCGTATA 60.094 50.000 0.00 0.00 0.00 1.47
513 526 1.338389 CGGTGTCCCCTGTTTTCGTAT 60.338 52.381 0.00 0.00 0.00 3.06
514 527 0.033781 CGGTGTCCCCTGTTTTCGTA 59.966 55.000 0.00 0.00 0.00 3.43
515 528 1.227734 CGGTGTCCCCTGTTTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
516 529 2.613506 GCGGTGTCCCCTGTTTTCG 61.614 63.158 0.00 0.00 0.00 3.46
611 632 0.958822 GAGCTAGCTAGGCCTGTCTC 59.041 60.000 19.38 14.10 0.00 3.36
612 633 0.821711 CGAGCTAGCTAGGCCTGTCT 60.822 60.000 19.38 14.57 0.00 3.41
623 644 1.281960 CATGCATTGGCGAGCTAGC 59.718 57.895 10.75 10.75 45.35 3.42
776 797 1.131303 CAACTACTGGGGGTGGTGGA 61.131 60.000 0.00 0.00 39.58 4.02
829 853 1.530441 CGAGATGTACGTGGGTGTACG 60.530 57.143 0.00 0.00 46.08 3.67
830 854 1.796617 GCGAGATGTACGTGGGTGTAC 60.797 57.143 0.00 0.00 43.95 2.90
831 855 0.452987 GCGAGATGTACGTGGGTGTA 59.547 55.000 0.00 0.00 0.00 2.90
834 858 1.214589 GTGCGAGATGTACGTGGGT 59.785 57.895 0.00 0.00 0.00 4.51
835 859 1.518572 GGTGCGAGATGTACGTGGG 60.519 63.158 0.00 0.00 33.41 4.61
875 902 1.047034 GGCGGGATATATAGGCGGGT 61.047 60.000 0.00 0.00 0.00 5.28
876 903 1.746517 GGCGGGATATATAGGCGGG 59.253 63.158 0.00 0.00 0.00 6.13
880 907 1.755393 GCGGGGGCGGGATATATAGG 61.755 65.000 0.00 0.00 0.00 2.57
938 971 3.044305 GTGGTGACTGGCGAGTGC 61.044 66.667 5.94 0.00 41.71 4.40
993 1026 4.790962 AGCAGCTCCATGGCCGTG 62.791 66.667 18.73 18.73 0.00 4.94
994 1027 4.790962 CAGCAGCTCCATGGCCGT 62.791 66.667 6.96 0.00 0.00 5.68
1389 1428 0.865111 CGACATTGAGCACGACCAAA 59.135 50.000 0.00 0.00 0.00 3.28
1390 1429 0.948623 CCGACATTGAGCACGACCAA 60.949 55.000 0.00 0.00 0.00 3.67
2101 2161 3.622826 CGACGTGTTCCCCCACCT 61.623 66.667 0.00 0.00 31.47 4.00
2558 2628 8.736244 ACAGTCGTACATACACATATATATGCA 58.264 33.333 20.46 8.33 37.19 3.96
2621 2693 9.901172 ATTTCTTCTAAGTATACCCGAACAAAT 57.099 29.630 0.00 3.75 0.00 2.32
2673 2745 4.320608 TCATGCCTTTGTTCACTTTTCC 57.679 40.909 0.00 0.00 0.00 3.13
2687 2761 8.579850 TCAGAAAGTAACAAATATTCATGCCT 57.420 30.769 0.00 0.00 0.00 4.75
2709 2793 5.954335 GGTTGTTGACCCATCTAAAATCAG 58.046 41.667 0.00 0.00 43.06 2.90
2722 2806 8.595196 TTGAAGTCTCAATACAGGTTGTTGACC 61.595 40.741 0.00 0.00 41.60 4.02
2822 4381 8.500773 GGTTCAAATTCGTATGAAGTAGACAAA 58.499 33.333 3.36 0.00 37.57 2.83
2829 4388 4.759693 TGCAGGTTCAAATTCGTATGAAGT 59.240 37.500 3.36 0.00 37.57 3.01
2830 4389 5.295431 TGCAGGTTCAAATTCGTATGAAG 57.705 39.130 3.36 0.00 37.57 3.02
2851 4410 3.121261 GCAATTTGCGACATGAACACTTG 60.121 43.478 5.49 2.79 31.71 3.16
2877 4436 7.278424 AGTGTTTTGAACAAATTGGAACATGAG 59.722 33.333 0.00 0.00 44.16 2.90
2878 4437 7.102346 AGTGTTTTGAACAAATTGGAACATGA 58.898 30.769 0.00 0.00 44.16 3.07
2879 4438 7.306205 AGTGTTTTGAACAAATTGGAACATG 57.694 32.000 0.00 0.00 44.16 3.21
2885 4444 8.195617 ACATGTAAGTGTTTTGAACAAATTGG 57.804 30.769 0.00 0.00 44.16 3.16
2899 4458 9.278978 TGTTCACAACAATATACATGTAAGTGT 57.721 29.630 10.14 11.04 38.72 3.55
2915 4474 9.868277 AGACAAATTAGAATTTTGTTCACAACA 57.132 25.926 3.59 0.00 36.52 3.33
2932 4491 9.878667 TCAAATCCGTATGAAGTAGACAAATTA 57.121 29.630 0.00 0.00 0.00 1.40
2933 4492 8.786826 TCAAATCCGTATGAAGTAGACAAATT 57.213 30.769 0.00 0.00 0.00 1.82
2934 4493 8.665685 GTTCAAATCCGTATGAAGTAGACAAAT 58.334 33.333 0.00 0.00 36.31 2.32
2935 4494 7.118680 GGTTCAAATCCGTATGAAGTAGACAAA 59.881 37.037 0.00 0.00 36.31 2.83
2936 4495 6.592607 GGTTCAAATCCGTATGAAGTAGACAA 59.407 38.462 0.00 0.00 36.31 3.18
2937 4496 6.070995 AGGTTCAAATCCGTATGAAGTAGACA 60.071 38.462 0.00 0.00 36.31 3.41
2938 4497 6.338937 AGGTTCAAATCCGTATGAAGTAGAC 58.661 40.000 0.00 0.00 36.31 2.59
2939 4498 6.540438 AGGTTCAAATCCGTATGAAGTAGA 57.460 37.500 0.00 0.00 36.31 2.59
2940 4499 7.611213 AAAGGTTCAAATCCGTATGAAGTAG 57.389 36.000 0.00 0.00 36.31 2.57
2941 4500 9.675464 ATTAAAGGTTCAAATCCGTATGAAGTA 57.325 29.630 0.00 0.00 36.31 2.24
2942 4501 7.989416 TTAAAGGTTCAAATCCGTATGAAGT 57.011 32.000 0.00 0.00 36.31 3.01
2943 4502 8.458843 ACATTAAAGGTTCAAATCCGTATGAAG 58.541 33.333 0.00 0.00 36.31 3.02
2944 4503 8.343168 ACATTAAAGGTTCAAATCCGTATGAA 57.657 30.769 0.00 0.00 33.37 2.57
2945 4504 7.931578 ACATTAAAGGTTCAAATCCGTATGA 57.068 32.000 0.00 0.00 0.00 2.15
2946 4505 8.980143 AAACATTAAAGGTTCAAATCCGTATG 57.020 30.769 0.00 0.00 0.00 2.39
2947 4506 9.020731 AGAAACATTAAAGGTTCAAATCCGTAT 57.979 29.630 10.82 0.00 0.00 3.06
2948 4507 8.398878 AGAAACATTAAAGGTTCAAATCCGTA 57.601 30.769 10.82 0.00 0.00 4.02
2949 4508 7.284919 AGAAACATTAAAGGTTCAAATCCGT 57.715 32.000 10.82 0.00 0.00 4.69
2950 4509 9.124807 GTAAGAAACATTAAAGGTTCAAATCCG 57.875 33.333 10.82 0.00 0.00 4.18
2951 4510 9.974980 TGTAAGAAACATTAAAGGTTCAAATCC 57.025 29.630 10.82 0.00 31.43 3.01
2955 4514 9.959749 GATGTGTAAGAAACATTAAAGGTTCAA 57.040 29.630 10.82 0.00 41.10 2.69
2956 4515 8.286800 CGATGTGTAAGAAACATTAAAGGTTCA 58.713 33.333 10.82 0.00 41.10 3.18
2957 4516 7.270579 GCGATGTGTAAGAAACATTAAAGGTTC 59.729 37.037 0.12 0.12 41.10 3.62
2958 4517 7.081976 GCGATGTGTAAGAAACATTAAAGGTT 58.918 34.615 0.00 0.00 41.10 3.50
2959 4518 6.349033 GGCGATGTGTAAGAAACATTAAAGGT 60.349 38.462 0.00 0.00 41.10 3.50
2960 4519 6.027749 GGCGATGTGTAAGAAACATTAAAGG 58.972 40.000 0.00 0.00 41.10 3.11
2961 4520 5.732647 CGGCGATGTGTAAGAAACATTAAAG 59.267 40.000 0.00 0.00 41.10 1.85
2962 4521 5.391097 CCGGCGATGTGTAAGAAACATTAAA 60.391 40.000 9.30 0.00 41.10 1.52
2963 4522 4.093703 CCGGCGATGTGTAAGAAACATTAA 59.906 41.667 9.30 0.00 41.10 1.40
2964 4523 3.619483 CCGGCGATGTGTAAGAAACATTA 59.381 43.478 9.30 0.00 41.10 1.90
2965 4524 2.418628 CCGGCGATGTGTAAGAAACATT 59.581 45.455 9.30 0.00 41.10 2.71
2966 4525 2.006888 CCGGCGATGTGTAAGAAACAT 58.993 47.619 9.30 0.00 41.10 2.71
2967 4526 1.270412 ACCGGCGATGTGTAAGAAACA 60.270 47.619 9.30 0.00 35.06 2.83
2968 4527 1.435577 ACCGGCGATGTGTAAGAAAC 58.564 50.000 9.30 0.00 0.00 2.78
2969 4528 2.417651 CCTACCGGCGATGTGTAAGAAA 60.418 50.000 9.30 0.00 0.00 2.52
2970 4529 1.135527 CCTACCGGCGATGTGTAAGAA 59.864 52.381 9.30 0.00 0.00 2.52
2971 4530 0.742505 CCTACCGGCGATGTGTAAGA 59.257 55.000 9.30 0.00 0.00 2.10
2972 4531 0.458669 ACCTACCGGCGATGTGTAAG 59.541 55.000 9.30 0.00 0.00 2.34
2973 4532 1.761449 TACCTACCGGCGATGTGTAA 58.239 50.000 9.30 0.00 0.00 2.41
2974 4533 1.985473 ATACCTACCGGCGATGTGTA 58.015 50.000 9.30 5.08 0.00 2.90
2975 4534 1.985473 TATACCTACCGGCGATGTGT 58.015 50.000 9.30 0.00 0.00 3.72
2976 4535 3.250744 CAATATACCTACCGGCGATGTG 58.749 50.000 9.30 0.00 0.00 3.21
2977 4536 2.895404 ACAATATACCTACCGGCGATGT 59.105 45.455 9.30 0.04 0.00 3.06
2978 4537 3.587797 ACAATATACCTACCGGCGATG 57.412 47.619 9.30 0.00 0.00 3.84
2979 4538 3.322828 ACAACAATATACCTACCGGCGAT 59.677 43.478 9.30 0.00 0.00 4.58
2980 4539 2.694628 ACAACAATATACCTACCGGCGA 59.305 45.455 9.30 0.00 0.00 5.54
2981 4540 2.798283 CACAACAATATACCTACCGGCG 59.202 50.000 0.00 0.00 0.00 6.46
2982 4541 4.062677 TCACAACAATATACCTACCGGC 57.937 45.455 0.00 0.00 0.00 6.13
2983 4542 7.663827 TCTATTCACAACAATATACCTACCGG 58.336 38.462 0.00 0.00 0.00 5.28
2984 4543 9.706691 ATTCTATTCACAACAATATACCTACCG 57.293 33.333 0.00 0.00 0.00 4.02
3024 4583 3.521531 TGTTTCCTACACATAGGCCATGA 59.478 43.478 18.41 0.00 46.97 3.07
3057 4618 8.896744 CCTTGCTGATTTTTCATATAAGACTCA 58.103 33.333 0.00 0.00 0.00 3.41
3059 4620 8.897752 GTCCTTGCTGATTTTTCATATAAGACT 58.102 33.333 0.00 0.00 0.00 3.24
3076 4637 4.395854 TGCATGTACTAAATGTCCTTGCTG 59.604 41.667 0.00 0.00 0.00 4.41
3123 4685 2.229792 TGGTGTACGACGTTTCCTACT 58.770 47.619 5.50 0.00 0.00 2.57
3127 4689 2.068837 TCATGGTGTACGACGTTTCC 57.931 50.000 5.50 7.30 0.00 3.13
3147 6372 7.072454 TGGGCTAGGTAGTGATCTTAAAATCAT 59.928 37.037 0.00 0.00 37.93 2.45
3156 6381 1.214673 TCGTGGGCTAGGTAGTGATCT 59.785 52.381 0.00 0.00 0.00 2.75
3204 9306 5.133941 TGCATGTTTAGTTGGTTGTCCTTA 58.866 37.500 0.00 0.00 34.23 2.69
3205 9307 3.957497 TGCATGTTTAGTTGGTTGTCCTT 59.043 39.130 0.00 0.00 34.23 3.36
3206 9308 3.561143 TGCATGTTTAGTTGGTTGTCCT 58.439 40.909 0.00 0.00 34.23 3.85
3207 9309 4.022416 TCATGCATGTTTAGTTGGTTGTCC 60.022 41.667 25.43 0.00 0.00 4.02
3208 9310 4.917415 GTCATGCATGTTTAGTTGGTTGTC 59.083 41.667 25.43 0.00 0.00 3.18
3210 9312 4.869215 TGTCATGCATGTTTAGTTGGTTG 58.131 39.130 25.43 0.00 0.00 3.77
3211 9313 5.509501 CCTTGTCATGCATGTTTAGTTGGTT 60.510 40.000 25.43 0.00 0.00 3.67
3212 9314 4.022068 CCTTGTCATGCATGTTTAGTTGGT 60.022 41.667 25.43 0.00 0.00 3.67
3213 9315 4.218200 TCCTTGTCATGCATGTTTAGTTGG 59.782 41.667 25.43 17.75 0.00 3.77
3214 9316 5.375417 TCCTTGTCATGCATGTTTAGTTG 57.625 39.130 25.43 10.08 0.00 3.16
3215 9317 5.948162 AGATCCTTGTCATGCATGTTTAGTT 59.052 36.000 25.43 10.54 0.00 2.24
3216 9318 5.503927 AGATCCTTGTCATGCATGTTTAGT 58.496 37.500 25.43 7.84 0.00 2.24
3317 11693 0.094730 GTTGAGAAAATCGACGGGCG 59.905 55.000 0.00 0.00 42.69 6.13
3318 11694 1.439679 AGTTGAGAAAATCGACGGGC 58.560 50.000 0.00 0.00 45.76 6.13
3319 11695 2.928116 GGTAGTTGAGAAAATCGACGGG 59.072 50.000 0.00 0.00 45.76 5.28
3324 11700 6.727824 ACTGATTGGTAGTTGAGAAAATCG 57.272 37.500 0.00 0.00 0.00 3.34
3345 11721 5.746990 ACACAGGAGACTTGCTTTATACT 57.253 39.130 0.00 0.00 40.21 2.12
3346 11722 7.900782 TTAACACAGGAGACTTGCTTTATAC 57.099 36.000 0.00 0.00 40.21 1.47
3347 11723 8.100791 ACATTAACACAGGAGACTTGCTTTATA 58.899 33.333 0.00 0.00 40.21 0.98
3348 11724 6.942576 ACATTAACACAGGAGACTTGCTTTAT 59.057 34.615 0.00 0.00 40.21 1.40
3349 11725 6.296026 ACATTAACACAGGAGACTTGCTTTA 58.704 36.000 0.00 0.00 40.21 1.85
3350 11726 5.133221 ACATTAACACAGGAGACTTGCTTT 58.867 37.500 0.00 0.00 40.21 3.51
3351 11727 4.718961 ACATTAACACAGGAGACTTGCTT 58.281 39.130 0.00 0.00 40.21 3.91
3352 11728 4.319177 GACATTAACACAGGAGACTTGCT 58.681 43.478 0.00 0.00 40.21 3.91
3353 11729 3.437049 GGACATTAACACAGGAGACTTGC 59.563 47.826 0.00 0.00 40.21 4.01
3354 11730 4.641396 TGGACATTAACACAGGAGACTTG 58.359 43.478 0.00 0.00 40.21 3.16
3355 11731 4.593206 TCTGGACATTAACACAGGAGACTT 59.407 41.667 0.00 0.00 40.21 3.01
3356 11732 4.160329 TCTGGACATTAACACAGGAGACT 58.840 43.478 0.00 0.00 46.44 3.24
3357 11733 4.499183 CTCTGGACATTAACACAGGAGAC 58.501 47.826 0.00 0.00 0.00 3.36
3358 11734 4.808414 CTCTGGACATTAACACAGGAGA 57.192 45.455 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.