Multiple sequence alignment - TraesCS6B01G422400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G422400 chr6B 100.000 3429 0 0 1 3429 692614308 692610880 0.000000e+00 6333
1 TraesCS6B01G422400 chr6B 90.598 1638 116 17 1640 3267 692715268 692713659 0.000000e+00 2137
2 TraesCS6B01G422400 chr6B 93.465 1117 46 5 359 1449 692716380 692715265 0.000000e+00 1633
3 TraesCS6B01G422400 chr6B 89.002 1182 104 13 1017 2183 692597322 692596152 0.000000e+00 1439
4 TraesCS6B01G422400 chr6B 83.821 1298 177 23 1018 2308 692586126 692584855 0.000000e+00 1203
5 TraesCS6B01G422400 chr6B 83.678 435 46 17 2665 3094 692583282 692582868 1.490000e-103 387
6 TraesCS6B01G422400 chr6B 83.155 374 40 5 2309 2680 692583650 692583298 1.540000e-83 320
7 TraesCS6B01G422400 chr6B 77.818 550 96 13 1405 1939 692733453 692733991 1.990000e-82 316
8 TraesCS6B01G422400 chr6B 93.038 158 10 1 3263 3420 692713582 692713426 2.660000e-56 230
9 TraesCS6B01G422400 chr6B 88.112 143 16 1 882 1023 692602633 692602491 5.890000e-38 169
10 TraesCS6B01G422400 chr6B 82.390 159 17 9 3264 3413 526487026 526487182 9.990000e-26 128
11 TraesCS6B01G422400 chr6B 95.833 72 3 0 2190 2261 692587529 692587458 2.160000e-22 117
12 TraesCS6B01G422400 chr6D 84.321 1569 190 33 1033 2586 455454855 455453328 0.000000e+00 1483
13 TraesCS6B01G422400 chr6D 84.646 495 53 15 2603 3094 455450467 455449993 4.010000e-129 472
14 TraesCS6B01G422400 chr6D 82.386 528 75 10 1658 2183 455501979 455502490 8.730000e-121 444
15 TraesCS6B01G422400 chr6D 90.991 111 10 0 3157 3267 352369184 352369074 2.130000e-32 150
16 TraesCS6B01G422400 chr6A 87.164 1340 115 26 1938 3267 602159641 602158349 0.000000e+00 1469
17 TraesCS6B01G422400 chr6A 92.222 450 34 1 883 1332 602160157 602159709 1.340000e-178 636
18 TraesCS6B01G422400 chr6A 80.492 528 85 10 1658 2183 602169401 602169912 4.150000e-104 388
19 TraesCS6B01G422400 chr6A 80.407 393 60 9 1658 2049 602341161 602341537 2.010000e-72 283
20 TraesCS6B01G422400 chr6A 92.174 115 8 1 751 864 602161756 602161642 9.850000e-36 161
21 TraesCS6B01G422400 chr4A 93.396 106 6 1 3163 3267 623442329 623442224 4.580000e-34 156
22 TraesCS6B01G422400 chr4D 92.453 106 7 1 3163 3267 342543130 342543025 2.130000e-32 150
23 TraesCS6B01G422400 chr3A 93.204 103 6 1 3163 3264 410084630 410084528 2.130000e-32 150
24 TraesCS6B01G422400 chr3A 93.204 103 6 1 3163 3264 410090294 410090192 2.130000e-32 150
25 TraesCS6B01G422400 chr7B 92.381 105 7 1 3157 3261 640209811 640209914 7.670000e-32 148
26 TraesCS6B01G422400 chr7B 81.967 122 18 3 3024 3141 255035442 255035563 2.180000e-17 100
27 TraesCS6B01G422400 chr1A 91.589 107 7 2 3163 3267 578006760 578006654 2.760000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G422400 chr6B 692610880 692614308 3428 True 6333.000000 6333 100.00000 1 3429 1 chr6B.!!$R3 3428
1 TraesCS6B01G422400 chr6B 692596152 692597322 1170 True 1439.000000 1439 89.00200 1017 2183 1 chr6B.!!$R1 1166
2 TraesCS6B01G422400 chr6B 692713426 692716380 2954 True 1333.333333 2137 92.36700 359 3420 3 chr6B.!!$R5 3061
3 TraesCS6B01G422400 chr6B 692582868 692587529 4661 True 506.750000 1203 86.62175 1018 3094 4 chr6B.!!$R4 2076
4 TraesCS6B01G422400 chr6B 692733453 692733991 538 False 316.000000 316 77.81800 1405 1939 1 chr6B.!!$F2 534
5 TraesCS6B01G422400 chr6D 455449993 455454855 4862 True 977.500000 1483 84.48350 1033 3094 2 chr6D.!!$R2 2061
6 TraesCS6B01G422400 chr6D 455501979 455502490 511 False 444.000000 444 82.38600 1658 2183 1 chr6D.!!$F1 525
7 TraesCS6B01G422400 chr6A 602158349 602161756 3407 True 755.333333 1469 90.52000 751 3267 3 chr6A.!!$R1 2516
8 TraesCS6B01G422400 chr6A 602169401 602169912 511 False 388.000000 388 80.49200 1658 2183 1 chr6A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.033504 GAAGGAGACTGTGGCAACGA 59.966 55.0 0.0 0.0 42.68 3.85 F
33 34 0.034059 AAGGAGACTGTGGCAACGAG 59.966 55.0 0.0 0.0 42.68 4.18 F
69 70 0.038166 TGGTGAAGATGGGAGGCAAC 59.962 55.0 0.0 0.0 0.00 4.17 F
70 71 0.038166 GGTGAAGATGGGAGGCAACA 59.962 55.0 0.0 0.0 41.41 3.33 F
74 75 0.040204 AAGATGGGAGGCAACAAGGG 59.960 55.0 0.0 0.0 41.41 3.95 F
93 94 0.179092 GTGGTCGTATAGTGTGGGGC 60.179 60.0 0.0 0.0 0.00 5.80 F
1023 2516 0.305922 GGAAGCAATTCGCAGATCCG 59.694 55.0 0.0 0.0 46.13 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 3013 0.173481 TCAGAACCGAGCTTGATCCG 59.827 55.000 1.22 0.00 0.00 4.18 R
1844 3364 0.460459 TTGGCGTGTTGAGTCGTCAA 60.460 50.000 0.66 0.66 46.56 3.18 R
2037 3572 2.029290 GCCTTCTCCGTTGTAGAACTCA 60.029 50.000 0.86 0.00 0.00 3.41 R
2152 3687 5.244402 TCCAACAAGCTCATCAACATCATTT 59.756 36.000 0.00 0.00 0.00 2.32 R
2267 3806 3.998099 TGCATTTTCACCAACGAATGA 57.002 38.095 0.00 0.00 32.61 2.57 R
2285 3824 5.942872 AGTTACAAATAGCAACAGTCATGC 58.057 37.500 0.00 0.00 44.15 4.06 R
2495 5240 1.523758 ACCAAATGAAGACCGAGCAC 58.476 50.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.797025 GTTCCACAACGAGGAAGGAG 58.203 55.000 0.00 0.00 45.27 3.69
21 22 0.966920 TCCACAACGAGGAAGGAGAC 59.033 55.000 0.00 0.00 30.71 3.36
22 23 5.120172 GTTCCACAACGAGGAAGGAGACT 62.120 52.174 0.00 0.00 45.27 3.24
23 24 1.337260 CCACAACGAGGAAGGAGACTG 60.337 57.143 0.00 0.00 42.68 3.51
24 25 1.341531 CACAACGAGGAAGGAGACTGT 59.658 52.381 0.00 0.00 42.68 3.55
25 26 1.341531 ACAACGAGGAAGGAGACTGTG 59.658 52.381 0.00 0.00 42.68 3.66
26 27 0.969894 AACGAGGAAGGAGACTGTGG 59.030 55.000 0.00 0.00 42.68 4.17
27 28 1.216710 CGAGGAAGGAGACTGTGGC 59.783 63.158 0.00 0.00 42.68 5.01
28 29 1.536073 CGAGGAAGGAGACTGTGGCA 61.536 60.000 0.00 0.00 42.68 4.92
29 30 0.687354 GAGGAAGGAGACTGTGGCAA 59.313 55.000 0.00 0.00 42.68 4.52
30 31 0.398318 AGGAAGGAGACTGTGGCAAC 59.602 55.000 0.00 0.00 42.68 4.17
31 32 0.951040 GGAAGGAGACTGTGGCAACG 60.951 60.000 0.00 0.00 42.68 4.10
32 33 0.033504 GAAGGAGACTGTGGCAACGA 59.966 55.000 0.00 0.00 42.68 3.85
33 34 0.034059 AAGGAGACTGTGGCAACGAG 59.966 55.000 0.00 0.00 42.68 4.18
36 37 0.946221 GAGACTGTGGCAACGAGGTG 60.946 60.000 0.00 0.00 42.51 4.00
37 38 1.227556 GACTGTGGCAACGAGGTGT 60.228 57.895 0.00 0.00 42.51 4.16
38 39 1.222115 GACTGTGGCAACGAGGTGTC 61.222 60.000 0.00 0.00 42.51 3.67
39 40 1.961277 CTGTGGCAACGAGGTGTCC 60.961 63.158 0.00 0.00 42.51 4.02
40 41 2.110213 GTGGCAACGAGGTGTCCA 59.890 61.111 0.00 1.23 42.51 4.02
41 42 1.302511 GTGGCAACGAGGTGTCCAT 60.303 57.895 7.36 0.00 42.51 3.41
42 43 1.003839 TGGCAACGAGGTGTCCATC 60.004 57.895 0.00 0.00 42.51 3.51
45 46 1.639298 GCAACGAGGTGTCCATCAGC 61.639 60.000 0.00 0.00 43.96 4.26
62 63 2.022195 CAGCTTGATGGTGAAGATGGG 58.978 52.381 0.00 0.00 46.27 4.00
63 64 1.918262 AGCTTGATGGTGAAGATGGGA 59.082 47.619 0.00 0.00 0.00 4.37
64 65 2.092538 AGCTTGATGGTGAAGATGGGAG 60.093 50.000 0.00 0.00 0.00 4.30
65 66 2.928334 CTTGATGGTGAAGATGGGAGG 58.072 52.381 0.00 0.00 0.00 4.30
66 67 0.548031 TGATGGTGAAGATGGGAGGC 59.452 55.000 0.00 0.00 0.00 4.70
69 70 0.038166 TGGTGAAGATGGGAGGCAAC 59.962 55.000 0.00 0.00 0.00 4.17
70 71 0.038166 GGTGAAGATGGGAGGCAACA 59.962 55.000 0.00 0.00 41.41 3.33
71 72 1.547675 GGTGAAGATGGGAGGCAACAA 60.548 52.381 0.00 0.00 41.41 2.83
72 73 1.815003 GTGAAGATGGGAGGCAACAAG 59.185 52.381 0.00 0.00 41.41 3.16
73 74 1.272092 TGAAGATGGGAGGCAACAAGG 60.272 52.381 0.00 0.00 41.41 3.61
74 75 0.040204 AAGATGGGAGGCAACAAGGG 59.960 55.000 0.00 0.00 41.41 3.95
75 76 1.142688 AGATGGGAGGCAACAAGGGT 61.143 55.000 0.00 0.00 41.41 4.34
76 77 0.967380 GATGGGAGGCAACAAGGGTG 60.967 60.000 0.00 0.00 41.41 4.61
77 78 2.283173 GGGAGGCAACAAGGGTGG 60.283 66.667 0.00 0.00 41.41 4.61
78 79 2.520968 GGAGGCAACAAGGGTGGT 59.479 61.111 0.00 0.00 41.41 4.16
79 80 1.603739 GGAGGCAACAAGGGTGGTC 60.604 63.158 0.00 0.00 41.41 4.02
80 81 1.966451 GAGGCAACAAGGGTGGTCG 60.966 63.158 0.00 0.00 41.41 4.79
81 82 2.203294 GGCAACAAGGGTGGTCGT 60.203 61.111 0.00 0.00 0.00 4.34
83 84 0.322187 GGCAACAAGGGTGGTCGTAT 60.322 55.000 0.00 0.00 0.00 3.06
84 85 1.065998 GGCAACAAGGGTGGTCGTATA 60.066 52.381 0.00 0.00 0.00 1.47
85 86 2.277084 GCAACAAGGGTGGTCGTATAG 58.723 52.381 0.00 0.00 0.00 1.31
86 87 2.354403 GCAACAAGGGTGGTCGTATAGT 60.354 50.000 0.00 0.00 0.00 2.12
87 88 3.259064 CAACAAGGGTGGTCGTATAGTG 58.741 50.000 0.00 0.00 0.00 2.74
89 90 2.232941 ACAAGGGTGGTCGTATAGTGTG 59.767 50.000 0.00 0.00 0.00 3.82
90 91 1.481871 AGGGTGGTCGTATAGTGTGG 58.518 55.000 0.00 0.00 0.00 4.17
91 92 0.462789 GGGTGGTCGTATAGTGTGGG 59.537 60.000 0.00 0.00 0.00 4.61
92 93 0.462789 GGTGGTCGTATAGTGTGGGG 59.537 60.000 0.00 0.00 0.00 4.96
93 94 0.179092 GTGGTCGTATAGTGTGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
94 95 0.615261 TGGTCGTATAGTGTGGGGCA 60.615 55.000 0.00 0.00 0.00 5.36
95 96 0.756903 GGTCGTATAGTGTGGGGCAT 59.243 55.000 0.00 0.00 0.00 4.40
97 98 2.210116 GTCGTATAGTGTGGGGCATTG 58.790 52.381 0.00 0.00 0.00 2.82
101 102 0.332632 ATAGTGTGGGGCATTGTGCT 59.667 50.000 1.64 0.00 44.28 4.40
102 103 0.608856 TAGTGTGGGGCATTGTGCTG 60.609 55.000 1.64 0.00 44.28 4.41
105 106 1.303561 GTGGGGCATTGTGCTGAGA 60.304 57.895 1.64 0.00 44.28 3.27
106 107 0.895100 GTGGGGCATTGTGCTGAGAA 60.895 55.000 1.64 0.00 44.28 2.87
107 108 0.609957 TGGGGCATTGTGCTGAGAAG 60.610 55.000 1.64 0.00 44.28 2.85
108 109 0.610232 GGGGCATTGTGCTGAGAAGT 60.610 55.000 1.64 0.00 44.28 3.01
109 110 1.340017 GGGGCATTGTGCTGAGAAGTA 60.340 52.381 1.64 0.00 44.28 2.24
110 111 2.436417 GGGCATTGTGCTGAGAAGTAA 58.564 47.619 1.64 0.00 44.28 2.24
111 112 2.421424 GGGCATTGTGCTGAGAAGTAAG 59.579 50.000 1.64 0.00 44.28 2.34
112 113 2.159462 GGCATTGTGCTGAGAAGTAAGC 60.159 50.000 1.64 0.00 44.28 3.09
113 114 2.475187 GCATTGTGCTGAGAAGTAAGCG 60.475 50.000 0.00 0.00 42.54 4.68
114 115 2.812358 TTGTGCTGAGAAGTAAGCGA 57.188 45.000 0.00 0.00 42.54 4.93
115 116 2.812358 TGTGCTGAGAAGTAAGCGAA 57.188 45.000 0.00 0.00 42.54 4.70
117 118 2.800544 TGTGCTGAGAAGTAAGCGAAAC 59.199 45.455 0.00 0.00 42.54 2.78
118 119 2.800544 GTGCTGAGAAGTAAGCGAAACA 59.199 45.455 0.00 0.00 42.54 2.83
119 120 3.059884 TGCTGAGAAGTAAGCGAAACAG 58.940 45.455 0.00 0.00 42.54 3.16
120 121 2.413453 GCTGAGAAGTAAGCGAAACAGG 59.587 50.000 0.00 0.00 0.00 4.00
121 122 2.413453 CTGAGAAGTAAGCGAAACAGGC 59.587 50.000 0.00 0.00 0.00 4.85
122 123 2.224185 TGAGAAGTAAGCGAAACAGGCA 60.224 45.455 0.00 0.00 0.00 4.75
123 124 2.806244 GAGAAGTAAGCGAAACAGGCAA 59.194 45.455 0.00 0.00 0.00 4.52
125 126 1.961793 AGTAAGCGAAACAGGCAACA 58.038 45.000 0.00 0.00 41.41 3.33
126 127 2.294074 AGTAAGCGAAACAGGCAACAA 58.706 42.857 0.00 0.00 41.41 2.83
128 129 2.138596 AAGCGAAACAGGCAACAATG 57.861 45.000 0.00 0.00 41.41 2.82
129 130 1.032014 AGCGAAACAGGCAACAATGT 58.968 45.000 0.00 0.00 41.41 2.71
130 131 2.226330 AGCGAAACAGGCAACAATGTA 58.774 42.857 0.00 0.00 41.41 2.29
131 132 2.226437 AGCGAAACAGGCAACAATGTAG 59.774 45.455 0.00 0.00 41.41 2.74
134 135 3.003275 CGAAACAGGCAACAATGTAGTGT 59.997 43.478 0.00 0.00 41.41 3.55
135 136 4.537015 GAAACAGGCAACAATGTAGTGTC 58.463 43.478 0.00 0.00 41.41 3.67
137 138 3.754965 ACAGGCAACAATGTAGTGTCAT 58.245 40.909 0.00 0.00 41.41 3.06
138 139 4.144297 ACAGGCAACAATGTAGTGTCATT 58.856 39.130 0.00 0.00 38.38 2.57
139 140 4.584325 ACAGGCAACAATGTAGTGTCATTT 59.416 37.500 0.00 0.00 36.10 2.32
142 143 7.144661 CAGGCAACAATGTAGTGTCATTTAAA 58.855 34.615 0.00 0.00 36.10 1.52
143 144 7.651304 CAGGCAACAATGTAGTGTCATTTAAAA 59.349 33.333 0.00 0.00 36.10 1.52
145 146 8.647226 GGCAACAATGTAGTGTCATTTAAAATC 58.353 33.333 0.00 0.00 36.10 2.17
146 147 8.647226 GCAACAATGTAGTGTCATTTAAAATCC 58.353 33.333 0.00 0.00 36.10 3.01
147 148 9.689976 CAACAATGTAGTGTCATTTAAAATCCA 57.310 29.630 0.00 0.00 36.10 3.41
148 149 9.912634 AACAATGTAGTGTCATTTAAAATCCAG 57.087 29.630 0.00 0.00 36.10 3.86
149 150 9.295825 ACAATGTAGTGTCATTTAAAATCCAGA 57.704 29.630 0.00 0.00 36.10 3.86
152 153 7.816640 TGTAGTGTCATTTAAAATCCAGAAGC 58.183 34.615 0.00 0.00 0.00 3.86
154 155 6.917533 AGTGTCATTTAAAATCCAGAAGCTG 58.082 36.000 0.00 0.00 0.00 4.24
155 156 6.716628 AGTGTCATTTAAAATCCAGAAGCTGA 59.283 34.615 0.00 0.00 32.44 4.26
156 157 7.231317 AGTGTCATTTAAAATCCAGAAGCTGAA 59.769 33.333 0.00 0.00 32.44 3.02
157 158 7.540055 GTGTCATTTAAAATCCAGAAGCTGAAG 59.460 37.037 0.00 0.00 32.44 3.02
158 159 7.448161 TGTCATTTAAAATCCAGAAGCTGAAGA 59.552 33.333 0.00 0.00 32.44 2.87
159 160 8.299570 GTCATTTAAAATCCAGAAGCTGAAGAA 58.700 33.333 0.00 0.00 32.44 2.52
161 162 9.136952 CATTTAAAATCCAGAAGCTGAAGAAAG 57.863 33.333 0.00 0.00 32.44 2.62
163 164 5.956068 AAATCCAGAAGCTGAAGAAAGAC 57.044 39.130 0.00 0.00 32.44 3.01
164 165 4.906747 ATCCAGAAGCTGAAGAAAGACT 57.093 40.909 0.00 0.00 32.44 3.24
166 167 6.558488 ATCCAGAAGCTGAAGAAAGACTAT 57.442 37.500 0.00 0.00 32.44 2.12
167 168 5.971763 TCCAGAAGCTGAAGAAAGACTATC 58.028 41.667 0.00 0.00 32.44 2.08
168 169 5.481824 TCCAGAAGCTGAAGAAAGACTATCA 59.518 40.000 0.00 0.00 32.44 2.15
170 171 6.652481 CCAGAAGCTGAAGAAAGACTATCAAA 59.348 38.462 0.00 0.00 32.44 2.69
171 172 7.336427 CCAGAAGCTGAAGAAAGACTATCAAAT 59.664 37.037 0.00 0.00 32.44 2.32
172 173 8.728833 CAGAAGCTGAAGAAAGACTATCAAATT 58.271 33.333 0.00 0.00 32.44 1.82
173 174 9.950496 AGAAGCTGAAGAAAGACTATCAAATTA 57.050 29.630 0.00 0.00 0.00 1.40
176 177 9.732130 AGCTGAAGAAAGACTATCAAATTAGTT 57.268 29.630 0.00 0.00 32.59 2.24
184 185 9.860898 AAAGACTATCAAATTAGTTTTGGATGC 57.139 29.630 0.00 0.00 44.07 3.91
185 186 8.579850 AGACTATCAAATTAGTTTTGGATGCA 57.420 30.769 0.00 0.00 44.07 3.96
186 187 9.193806 AGACTATCAAATTAGTTTTGGATGCAT 57.806 29.630 0.00 0.00 44.07 3.96
189 190 9.403110 CTATCAAATTAGTTTTGGATGCATAGC 57.597 33.333 0.00 0.00 44.07 2.97
190 191 6.572519 TCAAATTAGTTTTGGATGCATAGCC 58.427 36.000 0.00 0.00 44.07 3.93
191 192 5.535753 AATTAGTTTTGGATGCATAGCCC 57.464 39.130 0.00 0.00 0.00 5.19
192 193 2.530460 AGTTTTGGATGCATAGCCCA 57.470 45.000 0.00 0.00 0.00 5.36
193 194 2.818921 AGTTTTGGATGCATAGCCCAA 58.181 42.857 12.97 12.97 38.10 4.12
194 195 3.172339 AGTTTTGGATGCATAGCCCAAA 58.828 40.909 21.23 21.23 45.16 3.28
220 221 9.917887 AAAAGGATATGATTGTCTCTCTTTCAT 57.082 29.630 0.00 0.00 0.00 2.57
221 222 9.558396 AAAGGATATGATTGTCTCTCTTTCATC 57.442 33.333 0.00 0.00 0.00 2.92
222 223 7.678837 AGGATATGATTGTCTCTCTTTCATCC 58.321 38.462 0.00 0.00 0.00 3.51
223 224 7.513436 AGGATATGATTGTCTCTCTTTCATCCT 59.487 37.037 0.00 0.00 0.00 3.24
224 225 7.818930 GGATATGATTGTCTCTCTTTCATCCTC 59.181 40.741 0.00 0.00 0.00 3.71
225 226 5.350504 TGATTGTCTCTCTTTCATCCTCC 57.649 43.478 0.00 0.00 0.00 4.30
227 228 2.103373 TGTCTCTCTTTCATCCTCCGG 58.897 52.381 0.00 0.00 0.00 5.14
228 229 2.104170 GTCTCTCTTTCATCCTCCGGT 58.896 52.381 0.00 0.00 0.00 5.28
229 230 2.103373 TCTCTCTTTCATCCTCCGGTG 58.897 52.381 0.00 0.00 0.00 4.94
230 231 1.827969 CTCTCTTTCATCCTCCGGTGT 59.172 52.381 0.00 0.00 0.00 4.16
231 232 2.234908 CTCTCTTTCATCCTCCGGTGTT 59.765 50.000 0.00 0.00 0.00 3.32
232 233 2.637872 TCTCTTTCATCCTCCGGTGTTT 59.362 45.455 0.00 0.00 0.00 2.83
233 234 3.072476 TCTCTTTCATCCTCCGGTGTTTT 59.928 43.478 0.00 0.00 0.00 2.43
234 235 3.146066 TCTTTCATCCTCCGGTGTTTTG 58.854 45.455 0.00 0.00 0.00 2.44
235 236 2.940994 TTCATCCTCCGGTGTTTTGA 57.059 45.000 0.00 0.00 0.00 2.69
236 237 2.940994 TCATCCTCCGGTGTTTTGAA 57.059 45.000 0.00 0.00 0.00 2.69
237 238 3.216187 TCATCCTCCGGTGTTTTGAAA 57.784 42.857 0.00 0.00 0.00 2.69
238 239 3.146066 TCATCCTCCGGTGTTTTGAAAG 58.854 45.455 0.00 0.00 0.00 2.62
240 241 1.028905 CCTCCGGTGTTTTGAAAGCA 58.971 50.000 0.00 0.00 0.00 3.91
242 243 1.676006 CTCCGGTGTTTTGAAAGCAGT 59.324 47.619 0.00 0.00 0.00 4.40
243 244 2.096248 TCCGGTGTTTTGAAAGCAGTT 58.904 42.857 0.00 0.00 0.00 3.16
244 245 3.280295 TCCGGTGTTTTGAAAGCAGTTA 58.720 40.909 0.00 0.00 0.00 2.24
245 246 3.695060 TCCGGTGTTTTGAAAGCAGTTAA 59.305 39.130 0.00 0.00 0.00 2.01
246 247 4.158025 TCCGGTGTTTTGAAAGCAGTTAAA 59.842 37.500 0.00 0.00 0.00 1.52
247 248 5.047188 CCGGTGTTTTGAAAGCAGTTAAAT 58.953 37.500 0.00 0.00 0.00 1.40
250 251 7.222999 CCGGTGTTTTGAAAGCAGTTAAATTTA 59.777 33.333 0.00 0.00 0.00 1.40
251 252 8.760569 CGGTGTTTTGAAAGCAGTTAAATTTAT 58.239 29.630 0.00 0.00 0.00 1.40
278 279 6.862711 AGAAACCAGTAAAAGAGTTGTAGC 57.137 37.500 0.00 0.00 0.00 3.58
280 281 6.706716 AGAAACCAGTAAAAGAGTTGTAGCTC 59.293 38.462 0.00 0.00 35.82 4.09
281 282 5.810080 ACCAGTAAAAGAGTTGTAGCTCT 57.190 39.130 0.00 0.00 46.82 4.09
282 283 5.542779 ACCAGTAAAAGAGTTGTAGCTCTG 58.457 41.667 0.00 0.00 44.34 3.35
283 284 4.390297 CCAGTAAAAGAGTTGTAGCTCTGC 59.610 45.833 0.00 0.00 44.34 4.26
284 285 4.390297 CAGTAAAAGAGTTGTAGCTCTGCC 59.610 45.833 0.00 0.00 44.34 4.85
285 286 3.778954 AAAAGAGTTGTAGCTCTGCCT 57.221 42.857 0.00 0.00 44.34 4.75
289 290 3.669536 AGAGTTGTAGCTCTGCCTTTTC 58.330 45.455 0.00 0.00 43.54 2.29
291 292 2.037251 AGTTGTAGCTCTGCCTTTTCGA 59.963 45.455 0.00 0.00 0.00 3.71
292 293 2.370281 TGTAGCTCTGCCTTTTCGAG 57.630 50.000 0.00 0.00 0.00 4.04
293 294 1.618837 TGTAGCTCTGCCTTTTCGAGT 59.381 47.619 0.00 0.00 0.00 4.18
294 295 2.263945 GTAGCTCTGCCTTTTCGAGTC 58.736 52.381 0.00 0.00 0.00 3.36
295 296 0.681733 AGCTCTGCCTTTTCGAGTCA 59.318 50.000 0.00 0.00 0.00 3.41
296 297 1.277557 AGCTCTGCCTTTTCGAGTCAT 59.722 47.619 0.00 0.00 0.00 3.06
297 298 2.079925 GCTCTGCCTTTTCGAGTCATT 58.920 47.619 0.00 0.00 0.00 2.57
298 299 2.159599 GCTCTGCCTTTTCGAGTCATTG 60.160 50.000 0.00 0.00 0.00 2.82
299 300 1.806542 TCTGCCTTTTCGAGTCATTGC 59.193 47.619 0.00 0.00 0.00 3.56
300 301 1.536766 CTGCCTTTTCGAGTCATTGCA 59.463 47.619 0.00 0.00 0.00 4.08
301 302 2.161855 TGCCTTTTCGAGTCATTGCAT 58.838 42.857 0.00 0.00 0.00 3.96
303 304 3.947196 TGCCTTTTCGAGTCATTGCATAT 59.053 39.130 0.00 0.00 0.00 1.78
305 306 5.237127 TGCCTTTTCGAGTCATTGCATATAG 59.763 40.000 0.00 0.00 0.00 1.31
306 307 5.466728 GCCTTTTCGAGTCATTGCATATAGA 59.533 40.000 0.00 0.00 0.00 1.98
307 308 6.347240 GCCTTTTCGAGTCATTGCATATAGAG 60.347 42.308 0.00 0.00 0.00 2.43
308 309 6.146837 CCTTTTCGAGTCATTGCATATAGAGG 59.853 42.308 0.00 0.00 0.00 3.69
309 310 4.790765 TCGAGTCATTGCATATAGAGGG 57.209 45.455 0.00 0.00 0.00 4.30
310 311 4.407365 TCGAGTCATTGCATATAGAGGGA 58.593 43.478 0.00 0.00 0.00 4.20
311 312 4.832823 TCGAGTCATTGCATATAGAGGGAA 59.167 41.667 0.00 0.00 0.00 3.97
313 314 5.991606 CGAGTCATTGCATATAGAGGGAAAA 59.008 40.000 0.00 0.00 0.00 2.29
314 315 6.483307 CGAGTCATTGCATATAGAGGGAAAAA 59.517 38.462 0.00 0.00 0.00 1.94
339 340 9.744468 AAAACTTCTTCATTACAACATACAACC 57.256 29.630 0.00 0.00 0.00 3.77
340 341 7.129109 ACTTCTTCATTACAACATACAACCG 57.871 36.000 0.00 0.00 0.00 4.44
341 342 5.539582 TCTTCATTACAACATACAACCGC 57.460 39.130 0.00 0.00 0.00 5.68
342 343 4.998033 TCTTCATTACAACATACAACCGCA 59.002 37.500 0.00 0.00 0.00 5.69
345 346 6.986904 TCATTACAACATACAACCGCAATA 57.013 33.333 0.00 0.00 0.00 1.90
346 347 7.379098 TCATTACAACATACAACCGCAATAA 57.621 32.000 0.00 0.00 0.00 1.40
347 348 7.817641 TCATTACAACATACAACCGCAATAAA 58.182 30.769 0.00 0.00 0.00 1.40
349 350 5.440234 ACAACATACAACCGCAATAAACA 57.560 34.783 0.00 0.00 0.00 2.83
350 351 5.216648 ACAACATACAACCGCAATAAACAC 58.783 37.500 0.00 0.00 0.00 3.32
351 352 5.215903 CAACATACAACCGCAATAAACACA 58.784 37.500 0.00 0.00 0.00 3.72
352 353 5.637006 ACATACAACCGCAATAAACACAT 57.363 34.783 0.00 0.00 0.00 3.21
353 354 6.019779 ACATACAACCGCAATAAACACATT 57.980 33.333 0.00 0.00 0.00 2.71
355 356 7.767261 ACATACAACCGCAATAAACACATTAT 58.233 30.769 0.00 0.00 35.69 1.28
356 357 8.247562 ACATACAACCGCAATAAACACATTATT 58.752 29.630 0.00 0.00 43.45 1.40
381 382 8.392372 TGTACAGTACTCTATATCGAGCAAAT 57.608 34.615 12.07 0.00 34.35 2.32
426 427 7.500559 GCCATAATCATTGAACTCTAGAACCTT 59.499 37.037 0.00 0.00 0.00 3.50
455 456 7.451566 AGTTTAATTCTTGCTTAATGAGGTGGT 59.548 33.333 0.00 0.00 0.00 4.16
458 459 6.670695 ATTCTTGCTTAATGAGGTGGTTTT 57.329 33.333 0.00 0.00 0.00 2.43
532 556 5.567138 ATGAGGCATTAAAACTTCCTTCG 57.433 39.130 0.00 0.00 0.00 3.79
534 558 4.695455 TGAGGCATTAAAACTTCCTTCGAG 59.305 41.667 0.00 0.00 0.00 4.04
844 870 5.346181 AGGTGTAGTAGCTGATTTCCTTC 57.654 43.478 0.00 0.00 35.38 3.46
873 899 7.981102 AAAAGAAGCTAATTTCCTACTTCGT 57.019 32.000 0.00 0.00 41.23 3.85
905 2398 1.289160 ATGTCATGGGTGTACTGCCT 58.711 50.000 0.00 0.00 0.00 4.75
907 2400 1.831106 TGTCATGGGTGTACTGCCTAG 59.169 52.381 0.00 0.00 0.00 3.02
913 2406 4.531357 TGGGTGTACTGCCTAGTAGTAT 57.469 45.455 7.21 0.00 39.96 2.12
989 2482 2.888414 CCAAACCCCTGAAATAACACGT 59.112 45.455 0.00 0.00 0.00 4.49
991 2484 2.484742 ACCCCTGAAATAACACGTCC 57.515 50.000 0.00 0.00 0.00 4.79
994 2487 3.181437 ACCCCTGAAATAACACGTCCTTT 60.181 43.478 0.00 0.00 0.00 3.11
1023 2516 0.305922 GGAAGCAATTCGCAGATCCG 59.694 55.000 0.00 0.00 46.13 4.18
1144 2637 4.035102 GCTGTCTCCCGGGCCTTT 62.035 66.667 18.49 0.00 0.00 3.11
1316 2811 6.786967 ACCTCGTGGTACTTACAGAATTAT 57.213 37.500 7.54 0.00 46.43 1.28
1448 2948 0.598065 GACAAAAAGACAGGCGCCAT 59.402 50.000 31.54 17.31 0.00 4.40
1475 2975 3.812019 GCTCTCGGCGAGGTCGAA 61.812 66.667 33.93 15.49 39.77 3.71
1485 2985 2.201732 GCGAGGTCGAAGCATATTTCA 58.798 47.619 2.94 0.00 43.02 2.69
1491 2991 3.476552 GTCGAAGCATATTTCATGGGGA 58.523 45.455 0.00 0.00 0.00 4.81
1499 2999 5.075493 GCATATTTCATGGGGAGAGACAAT 58.925 41.667 0.00 0.00 0.00 2.71
1503 3003 6.776887 ATTTCATGGGGAGAGACAATAGAT 57.223 37.500 0.00 0.00 0.00 1.98
1513 3013 6.463190 GGGAGAGACAATAGATTACTGGGAAC 60.463 46.154 0.00 0.00 0.00 3.62
1525 3025 0.807667 CTGGGAACGGATCAAGCTCG 60.808 60.000 0.00 0.00 39.98 5.03
1595 3110 7.391620 TGGGCCTATAAATTTAGTTCCTATCG 58.608 38.462 4.53 0.00 0.00 2.92
1598 3114 8.092687 GGCCTATAAATTTAGTTCCTATCGTCA 58.907 37.037 3.94 0.00 0.00 4.35
1616 3132 4.219725 TCGTCACTCAACTGATGGTATTCA 59.780 41.667 0.00 0.00 0.00 2.57
1634 3150 4.574674 TTCATTCCATCTAGTGCCAGTT 57.425 40.909 0.00 0.00 0.00 3.16
1651 3167 4.141574 GCCAGTTCTAACCATACCCATACA 60.142 45.833 0.00 0.00 0.00 2.29
1776 3296 3.691118 AGTATGCTGCTTACATGGTGTTG 59.309 43.478 22.64 0.00 0.00 3.33
1844 3364 3.894759 CATCAATCAGTGTTGGAGGGAT 58.105 45.455 5.86 0.00 0.00 3.85
1884 3404 2.576191 AGTTTGCCTCCAAGCCTACATA 59.424 45.455 0.00 0.00 33.20 2.29
1890 3416 2.630580 CCTCCAAGCCTACATAGAGGAC 59.369 54.545 0.00 0.00 42.93 3.85
1929 3455 3.935203 CTCGCAAACATATCTTGAGGTGT 59.065 43.478 0.00 0.00 0.00 4.16
1983 3518 4.005650 GTGATGCAATTCCTCTCACAGAA 58.994 43.478 9.00 0.00 36.94 3.02
2037 3572 1.617947 GGATGGAGGTCGAGCTTGGT 61.618 60.000 19.66 7.42 0.00 3.67
2152 3687 7.622081 TGTGGGGTATTGAGATTAGAACTAAGA 59.378 37.037 0.00 0.00 0.00 2.10
2184 3720 7.177216 TGTTGATGAGCTTGTTGGATTAAGAAT 59.823 33.333 0.00 0.00 0.00 2.40
2185 3721 7.707624 TGATGAGCTTGTTGGATTAAGAATT 57.292 32.000 0.00 0.00 0.00 2.17
2187 3723 7.394077 TGATGAGCTTGTTGGATTAAGAATTGA 59.606 33.333 0.00 0.00 0.00 2.57
2188 3724 7.707624 TGAGCTTGTTGGATTAAGAATTGAT 57.292 32.000 0.00 0.00 0.00 2.57
2360 5104 4.152402 ACATTGACTCGTATGCAAAGTCAC 59.848 41.667 18.48 1.29 46.63 3.67
2376 5120 7.024768 GCAAAGTCACGGCTTTTATTTATGTA 58.975 34.615 0.00 0.00 36.64 2.29
2444 5188 7.770897 GGTACAACATGTATCAGGAGATTTTCT 59.229 37.037 0.00 0.00 34.22 2.52
2445 5189 7.621428 ACAACATGTATCAGGAGATTTTCTG 57.379 36.000 0.00 0.00 35.67 3.02
2453 5198 1.133976 AGGAGATTTTCTGGCATCCGG 60.134 52.381 0.00 0.00 31.97 5.14
2468 5213 1.228737 CCGGGGGAACACAACCAAT 60.229 57.895 0.00 0.00 0.00 3.16
2488 5233 6.929049 ACCAATAAAAGCAAAGTAAGGAAAGC 59.071 34.615 0.00 0.00 0.00 3.51
2493 5238 5.535753 AAGCAAAGTAAGGAAAGCACATT 57.464 34.783 0.00 0.00 0.00 2.71
2495 5240 5.291971 AGCAAAGTAAGGAAAGCACATTTG 58.708 37.500 0.00 0.00 0.00 2.32
2524 5269 6.072728 TCGGTCTTCATTTGGTTCATTTAGTG 60.073 38.462 0.00 0.00 0.00 2.74
2532 5277 6.494893 TTTGGTTCATTTAGTGGATTCTCG 57.505 37.500 0.00 0.00 0.00 4.04
2548 5293 9.110502 GTGGATTCTCGGAGAAATAAATTTAGT 57.889 33.333 23.06 3.88 37.82 2.24
2557 5302 9.158233 CGGAGAAATAAATTTAGTCAACACCTA 57.842 33.333 3.94 0.00 0.00 3.08
2668 8307 0.171455 CTCTACTCGCACTCCACACC 59.829 60.000 0.00 0.00 0.00 4.16
2683 8322 2.292016 CCACACCGTTTAGTGATTGCAA 59.708 45.455 0.00 0.00 40.34 4.08
2722 8365 2.681848 CAGTGTCAGATCCTTTGATGGC 59.318 50.000 0.00 0.00 0.00 4.40
2785 8428 2.431782 ACAAGGCAACAGAAGTGCAAAT 59.568 40.909 0.00 0.00 41.41 2.32
2854 8499 9.848172 CAAAGCAAATGTATCAAAACAAGTTAC 57.152 29.630 0.00 0.00 32.02 2.50
2863 8508 4.798882 TCAAAACAAGTTACCCACTCCAT 58.201 39.130 0.00 0.00 32.94 3.41
2891 8536 7.647715 ACCACTCAAATTGAATTCTACAAAACG 59.352 33.333 7.05 0.00 0.00 3.60
2908 8553 6.746120 ACAAAACGATGACTGTAGTACTTCT 58.254 36.000 0.00 0.00 0.00 2.85
2971 8617 6.866770 TGATTCACAACTACACTAGTGCTTAC 59.133 38.462 22.90 3.27 39.39 2.34
2976 8622 6.256975 CACAACTACACTAGTGCTTACAAACA 59.743 38.462 22.90 0.00 39.39 2.83
3067 8716 9.950680 TGCTTCATTCTACTTTCTTTTACTTTG 57.049 29.630 0.00 0.00 0.00 2.77
3069 8718 9.399403 CTTCATTCTACTTTCTTTTACTTTGCC 57.601 33.333 0.00 0.00 0.00 4.52
3076 8725 7.843490 ACTTTCTTTTACTTTGCCTTTTTCC 57.157 32.000 0.00 0.00 0.00 3.13
3135 8784 8.538856 GTCGATCAAAAATTCTATCTGTCTCAG 58.461 37.037 0.00 0.00 0.00 3.35
3143 8792 7.415592 AATTCTATCTGTCTCAGTGATGACA 57.584 36.000 18.38 18.38 40.39 3.58
3155 8804 2.303022 AGTGATGACAGACCGTTGGATT 59.697 45.455 0.00 0.00 0.00 3.01
3285 9015 8.870879 GTGTAACAGGAGAGTAACATATTTGTC 58.129 37.037 0.00 0.00 33.01 3.18
3290 9020 8.543774 ACAGGAGAGTAACATATTTGTCAAGAT 58.456 33.333 0.00 0.00 34.06 2.40
3345 9075 7.418337 ACAAACCAAGGTAAAGAAAGACAAT 57.582 32.000 0.00 0.00 0.00 2.71
3354 9084 8.171164 AGGTAAAGAAAGACAATCAAGGAAAG 57.829 34.615 0.00 0.00 0.00 2.62
3379 9109 0.176680 CCTACTAGCTGTGGGTGCTG 59.823 60.000 0.00 0.00 41.74 4.41
3409 9139 4.322049 CGGACAGTATGAAGAAGAAGGTGT 60.322 45.833 0.00 0.00 39.69 4.16
3411 9141 5.279506 GGACAGTATGAAGAAGAAGGTGTGA 60.280 44.000 0.00 0.00 39.69 3.58
3420 9150 3.073650 AGAAGAAGGTGTGATCTTGGCTT 59.926 43.478 0.00 0.00 36.08 4.35
3421 9151 3.064900 AGAAGGTGTGATCTTGGCTTC 57.935 47.619 0.00 0.00 0.00 3.86
3422 9152 1.734465 GAAGGTGTGATCTTGGCTTCG 59.266 52.381 0.00 0.00 0.00 3.79
3423 9153 0.036010 AGGTGTGATCTTGGCTTCGG 60.036 55.000 0.00 0.00 0.00 4.30
3424 9154 1.648467 GGTGTGATCTTGGCTTCGGC 61.648 60.000 0.00 0.00 40.88 5.54
3425 9155 1.741401 TGTGATCTTGGCTTCGGCG 60.741 57.895 0.00 0.00 42.91 6.46
3426 9156 2.819595 TGATCTTGGCTTCGGCGC 60.820 61.111 0.00 0.00 42.91 6.53
3427 9157 2.819595 GATCTTGGCTTCGGCGCA 60.820 61.111 10.83 0.00 42.91 6.09
3428 9158 2.124570 ATCTTGGCTTCGGCGCAT 60.125 55.556 10.83 0.00 42.91 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.966920 GTCTCCTTCCTCGTTGTGGA 59.033 55.000 0.00 0.00 0.00 4.02
3 4 0.969894 AGTCTCCTTCCTCGTTGTGG 59.030 55.000 0.00 0.00 0.00 4.17
4 5 1.341531 ACAGTCTCCTTCCTCGTTGTG 59.658 52.381 0.00 0.00 0.00 3.33
5 6 1.341531 CACAGTCTCCTTCCTCGTTGT 59.658 52.381 0.00 0.00 0.00 3.32
6 7 1.337260 CCACAGTCTCCTTCCTCGTTG 60.337 57.143 0.00 0.00 0.00 4.10
7 8 0.969894 CCACAGTCTCCTTCCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
8 9 1.536943 GCCACAGTCTCCTTCCTCGT 61.537 60.000 0.00 0.00 0.00 4.18
10 11 0.687354 TTGCCACAGTCTCCTTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
11 12 0.398318 GTTGCCACAGTCTCCTTCCT 59.602 55.000 0.00 0.00 0.00 3.36
12 13 0.951040 CGTTGCCACAGTCTCCTTCC 60.951 60.000 0.00 0.00 0.00 3.46
13 14 0.033504 TCGTTGCCACAGTCTCCTTC 59.966 55.000 0.00 0.00 0.00 3.46
14 15 0.034059 CTCGTTGCCACAGTCTCCTT 59.966 55.000 0.00 0.00 0.00 3.36
15 16 1.668294 CTCGTTGCCACAGTCTCCT 59.332 57.895 0.00 0.00 0.00 3.69
16 17 1.374758 CCTCGTTGCCACAGTCTCC 60.375 63.158 0.00 0.00 0.00 3.71
17 18 0.946221 CACCTCGTTGCCACAGTCTC 60.946 60.000 0.00 0.00 0.00 3.36
19 20 1.222115 GACACCTCGTTGCCACAGTC 61.222 60.000 0.00 0.00 0.00 3.51
21 22 1.961277 GGACACCTCGTTGCCACAG 60.961 63.158 0.00 0.00 0.00 3.66
22 23 2.050836 ATGGACACCTCGTTGCCACA 62.051 55.000 0.00 0.00 0.00 4.17
23 24 1.298859 GATGGACACCTCGTTGCCAC 61.299 60.000 0.00 0.00 0.00 5.01
24 25 1.003839 GATGGACACCTCGTTGCCA 60.004 57.895 0.00 0.00 0.00 4.92
25 26 1.003839 TGATGGACACCTCGTTGCC 60.004 57.895 0.00 0.00 0.00 4.52
26 27 1.639298 GCTGATGGACACCTCGTTGC 61.639 60.000 0.00 0.00 0.00 4.17
27 28 0.036952 AGCTGATGGACACCTCGTTG 60.037 55.000 0.00 0.00 0.00 4.10
28 29 0.687354 AAGCTGATGGACACCTCGTT 59.313 50.000 0.00 0.00 0.00 3.85
29 30 0.036952 CAAGCTGATGGACACCTCGT 60.037 55.000 0.00 0.00 0.00 4.18
30 31 0.247460 TCAAGCTGATGGACACCTCG 59.753 55.000 0.00 0.00 0.00 4.63
31 32 2.706339 ATCAAGCTGATGGACACCTC 57.294 50.000 0.00 0.00 35.43 3.85
40 41 3.552875 CCATCTTCACCATCAAGCTGAT 58.447 45.455 0.00 0.00 37.65 2.90
41 42 2.356432 CCCATCTTCACCATCAAGCTGA 60.356 50.000 0.00 0.00 0.00 4.26
42 43 2.022195 CCCATCTTCACCATCAAGCTG 58.978 52.381 0.00 0.00 0.00 4.24
45 46 2.928334 CCTCCCATCTTCACCATCAAG 58.072 52.381 0.00 0.00 0.00 3.02
46 47 1.064463 GCCTCCCATCTTCACCATCAA 60.064 52.381 0.00 0.00 0.00 2.57
47 48 0.548031 GCCTCCCATCTTCACCATCA 59.452 55.000 0.00 0.00 0.00 3.07
48 49 0.548031 TGCCTCCCATCTTCACCATC 59.452 55.000 0.00 0.00 0.00 3.51
50 51 0.038166 GTTGCCTCCCATCTTCACCA 59.962 55.000 0.00 0.00 0.00 4.17
51 52 0.038166 TGTTGCCTCCCATCTTCACC 59.962 55.000 0.00 0.00 0.00 4.02
52 53 1.815003 CTTGTTGCCTCCCATCTTCAC 59.185 52.381 0.00 0.00 0.00 3.18
54 55 1.467920 CCTTGTTGCCTCCCATCTTC 58.532 55.000 0.00 0.00 0.00 2.87
56 57 1.142688 ACCCTTGTTGCCTCCCATCT 61.143 55.000 0.00 0.00 0.00 2.90
57 58 0.967380 CACCCTTGTTGCCTCCCATC 60.967 60.000 0.00 0.00 0.00 3.51
60 61 2.283173 CCACCCTTGTTGCCTCCC 60.283 66.667 0.00 0.00 0.00 4.30
61 62 1.603739 GACCACCCTTGTTGCCTCC 60.604 63.158 0.00 0.00 0.00 4.30
62 63 1.966451 CGACCACCCTTGTTGCCTC 60.966 63.158 0.00 0.00 0.00 4.70
63 64 1.412453 TACGACCACCCTTGTTGCCT 61.412 55.000 0.00 0.00 0.00 4.75
64 65 0.322187 ATACGACCACCCTTGTTGCC 60.322 55.000 0.00 0.00 0.00 4.52
65 66 2.277084 CTATACGACCACCCTTGTTGC 58.723 52.381 0.00 0.00 0.00 4.17
66 67 3.259064 CACTATACGACCACCCTTGTTG 58.741 50.000 0.00 0.00 0.00 3.33
69 70 2.418197 CCACACTATACGACCACCCTTG 60.418 54.545 0.00 0.00 0.00 3.61
70 71 1.829222 CCACACTATACGACCACCCTT 59.171 52.381 0.00 0.00 0.00 3.95
71 72 1.481871 CCACACTATACGACCACCCT 58.518 55.000 0.00 0.00 0.00 4.34
72 73 0.462789 CCCACACTATACGACCACCC 59.537 60.000 0.00 0.00 0.00 4.61
73 74 0.462789 CCCCACACTATACGACCACC 59.537 60.000 0.00 0.00 0.00 4.61
74 75 0.179092 GCCCCACACTATACGACCAC 60.179 60.000 0.00 0.00 0.00 4.16
75 76 0.615261 TGCCCCACACTATACGACCA 60.615 55.000 0.00 0.00 0.00 4.02
76 77 0.756903 ATGCCCCACACTATACGACC 59.243 55.000 0.00 0.00 0.00 4.79
77 78 2.210116 CAATGCCCCACACTATACGAC 58.790 52.381 0.00 0.00 0.00 4.34
78 79 1.834896 ACAATGCCCCACACTATACGA 59.165 47.619 0.00 0.00 0.00 3.43
79 80 1.939934 CACAATGCCCCACACTATACG 59.060 52.381 0.00 0.00 0.00 3.06
80 81 1.676006 GCACAATGCCCCACACTATAC 59.324 52.381 0.00 0.00 37.42 1.47
81 82 1.563879 AGCACAATGCCCCACACTATA 59.436 47.619 0.00 0.00 46.52 1.31
83 84 0.608856 CAGCACAATGCCCCACACTA 60.609 55.000 0.00 0.00 46.52 2.74
84 85 1.904865 CAGCACAATGCCCCACACT 60.905 57.895 0.00 0.00 46.52 3.55
85 86 1.870055 CTCAGCACAATGCCCCACAC 61.870 60.000 0.00 0.00 46.52 3.82
86 87 1.604308 CTCAGCACAATGCCCCACA 60.604 57.895 0.00 0.00 46.52 4.17
87 88 0.895100 TTCTCAGCACAATGCCCCAC 60.895 55.000 0.00 0.00 46.52 4.61
89 90 0.610232 ACTTCTCAGCACAATGCCCC 60.610 55.000 0.00 0.00 46.52 5.80
90 91 2.113860 TACTTCTCAGCACAATGCCC 57.886 50.000 0.00 0.00 46.52 5.36
91 92 2.159462 GCTTACTTCTCAGCACAATGCC 60.159 50.000 0.00 0.00 46.52 4.40
92 93 2.475187 CGCTTACTTCTCAGCACAATGC 60.475 50.000 0.00 0.00 45.46 3.56
93 94 2.995939 TCGCTTACTTCTCAGCACAATG 59.004 45.455 0.00 0.00 35.60 2.82
94 95 3.319137 TCGCTTACTTCTCAGCACAAT 57.681 42.857 0.00 0.00 35.60 2.71
95 96 2.812358 TCGCTTACTTCTCAGCACAA 57.188 45.000 0.00 0.00 35.60 3.33
97 98 2.800544 TGTTTCGCTTACTTCTCAGCAC 59.199 45.455 0.00 0.00 35.60 4.40
101 102 2.224185 TGCCTGTTTCGCTTACTTCTCA 60.224 45.455 0.00 0.00 0.00 3.27
102 103 2.413837 TGCCTGTTTCGCTTACTTCTC 58.586 47.619 0.00 0.00 0.00 2.87
105 106 2.294074 TGTTGCCTGTTTCGCTTACTT 58.706 42.857 0.00 0.00 0.00 2.24
106 107 1.961793 TGTTGCCTGTTTCGCTTACT 58.038 45.000 0.00 0.00 0.00 2.24
107 108 2.766970 TTGTTGCCTGTTTCGCTTAC 57.233 45.000 0.00 0.00 0.00 2.34
108 109 2.621055 ACATTGTTGCCTGTTTCGCTTA 59.379 40.909 0.00 0.00 0.00 3.09
109 110 1.408702 ACATTGTTGCCTGTTTCGCTT 59.591 42.857 0.00 0.00 0.00 4.68
110 111 1.032014 ACATTGTTGCCTGTTTCGCT 58.968 45.000 0.00 0.00 0.00 4.93
111 112 2.031157 ACTACATTGTTGCCTGTTTCGC 60.031 45.455 0.00 0.00 0.00 4.70
112 113 3.003275 ACACTACATTGTTGCCTGTTTCG 59.997 43.478 0.00 0.00 0.00 3.46
113 114 4.036262 TGACACTACATTGTTGCCTGTTTC 59.964 41.667 0.00 0.00 0.00 2.78
114 115 3.951037 TGACACTACATTGTTGCCTGTTT 59.049 39.130 0.00 0.00 0.00 2.83
115 116 3.550820 TGACACTACATTGTTGCCTGTT 58.449 40.909 0.00 0.00 0.00 3.16
117 118 4.771590 AATGACACTACATTGTTGCCTG 57.228 40.909 0.00 0.00 38.76 4.85
118 119 6.892658 TTAAATGACACTACATTGTTGCCT 57.107 33.333 0.00 0.00 39.88 4.75
119 120 7.938563 TTTTAAATGACACTACATTGTTGCC 57.061 32.000 0.00 0.00 39.88 4.52
120 121 8.647226 GGATTTTAAATGACACTACATTGTTGC 58.353 33.333 0.00 0.00 39.88 4.17
121 122 9.689976 TGGATTTTAAATGACACTACATTGTTG 57.310 29.630 0.00 0.00 39.88 3.33
122 123 9.912634 CTGGATTTTAAATGACACTACATTGTT 57.087 29.630 0.00 0.00 39.88 2.83
123 124 9.295825 TCTGGATTTTAAATGACACTACATTGT 57.704 29.630 0.00 0.00 39.88 2.71
126 127 8.462016 GCTTCTGGATTTTAAATGACACTACAT 58.538 33.333 0.00 0.00 0.00 2.29
128 129 7.965107 CAGCTTCTGGATTTTAAATGACACTAC 59.035 37.037 0.00 0.00 0.00 2.73
129 130 7.882791 TCAGCTTCTGGATTTTAAATGACACTA 59.117 33.333 0.00 0.00 31.51 2.74
130 131 6.716628 TCAGCTTCTGGATTTTAAATGACACT 59.283 34.615 0.00 0.00 31.51 3.55
131 132 6.913170 TCAGCTTCTGGATTTTAAATGACAC 58.087 36.000 0.00 0.00 31.51 3.67
134 135 8.408043 TTCTTCAGCTTCTGGATTTTAAATGA 57.592 30.769 0.00 0.00 31.51 2.57
135 136 9.136952 CTTTCTTCAGCTTCTGGATTTTAAATG 57.863 33.333 0.00 0.00 31.51 2.32
137 138 8.352942 GTCTTTCTTCAGCTTCTGGATTTTAAA 58.647 33.333 0.00 0.00 31.51 1.52
138 139 7.721399 AGTCTTTCTTCAGCTTCTGGATTTTAA 59.279 33.333 0.00 0.00 31.51 1.52
139 140 7.227156 AGTCTTTCTTCAGCTTCTGGATTTTA 58.773 34.615 0.00 0.00 31.51 1.52
142 143 5.240013 AGTCTTTCTTCAGCTTCTGGATT 57.760 39.130 0.00 0.00 31.51 3.01
143 144 4.906747 AGTCTTTCTTCAGCTTCTGGAT 57.093 40.909 0.00 0.00 31.51 3.41
145 146 5.728471 TGATAGTCTTTCTTCAGCTTCTGG 58.272 41.667 0.00 0.00 31.51 3.86
146 147 7.664082 TTTGATAGTCTTTCTTCAGCTTCTG 57.336 36.000 0.00 0.00 0.00 3.02
147 148 8.860780 AATTTGATAGTCTTTCTTCAGCTTCT 57.139 30.769 0.00 0.00 0.00 2.85
149 150 9.732130 ACTAATTTGATAGTCTTTCTTCAGCTT 57.268 29.630 0.00 0.00 30.26 3.74
167 168 5.754890 GGGCTATGCATCCAAAACTAATTTG 59.245 40.000 0.19 0.00 46.54 2.32
168 169 5.424895 TGGGCTATGCATCCAAAACTAATTT 59.575 36.000 0.19 0.00 0.00 1.82
170 171 4.545678 TGGGCTATGCATCCAAAACTAAT 58.454 39.130 0.19 0.00 0.00 1.73
171 172 3.974719 TGGGCTATGCATCCAAAACTAA 58.025 40.909 0.19 0.00 0.00 2.24
172 173 3.660970 TGGGCTATGCATCCAAAACTA 57.339 42.857 0.19 0.00 0.00 2.24
173 174 2.530460 TGGGCTATGCATCCAAAACT 57.470 45.000 0.19 0.00 0.00 2.66
193 194 9.745018 TGAAAGAGAGACAATCATATCCTTTTT 57.255 29.630 0.00 0.00 0.00 1.94
194 195 9.917887 ATGAAAGAGAGACAATCATATCCTTTT 57.082 29.630 0.00 0.00 0.00 2.27
195 196 9.558396 GATGAAAGAGAGACAATCATATCCTTT 57.442 33.333 0.00 0.00 31.24 3.11
196 197 8.156165 GGATGAAAGAGAGACAATCATATCCTT 58.844 37.037 0.00 0.00 31.24 3.36
198 199 7.678837 AGGATGAAAGAGAGACAATCATATCC 58.321 38.462 0.00 0.00 31.24 2.59
201 202 6.239148 CGGAGGATGAAAGAGAGACAATCATA 60.239 42.308 0.00 0.00 31.24 2.15
202 203 5.453057 CGGAGGATGAAAGAGAGACAATCAT 60.453 44.000 0.00 0.00 33.64 2.45
203 204 4.142071 CGGAGGATGAAAGAGAGACAATCA 60.142 45.833 0.00 0.00 0.00 2.57
204 205 4.367450 CGGAGGATGAAAGAGAGACAATC 58.633 47.826 0.00 0.00 0.00 2.67
206 207 3.876274 CGGAGGATGAAAGAGAGACAA 57.124 47.619 0.00 0.00 0.00 3.18
222 223 1.676006 ACTGCTTTCAAAACACCGGAG 59.324 47.619 9.46 1.26 0.00 4.63
223 224 1.757682 ACTGCTTTCAAAACACCGGA 58.242 45.000 9.46 0.00 0.00 5.14
224 225 2.577449 AACTGCTTTCAAAACACCGG 57.423 45.000 0.00 0.00 0.00 5.28
225 226 6.582437 AATTTAACTGCTTTCAAAACACCG 57.418 33.333 0.00 0.00 0.00 4.94
255 256 6.592870 AGCTACAACTCTTTTACTGGTTTCT 58.407 36.000 0.00 0.00 0.00 2.52
257 258 6.483640 CAGAGCTACAACTCTTTTACTGGTTT 59.516 38.462 0.00 0.00 44.76 3.27
258 259 5.992217 CAGAGCTACAACTCTTTTACTGGTT 59.008 40.000 0.00 0.00 44.76 3.67
259 260 5.542779 CAGAGCTACAACTCTTTTACTGGT 58.457 41.667 0.00 0.00 44.76 4.00
260 261 4.390297 GCAGAGCTACAACTCTTTTACTGG 59.610 45.833 0.00 0.00 44.76 4.00
261 262 4.390297 GGCAGAGCTACAACTCTTTTACTG 59.610 45.833 0.00 0.00 44.76 2.74
262 263 4.284746 AGGCAGAGCTACAACTCTTTTACT 59.715 41.667 0.00 0.00 44.76 2.24
263 264 4.570930 AGGCAGAGCTACAACTCTTTTAC 58.429 43.478 0.00 0.00 44.76 2.01
264 265 4.891992 AGGCAGAGCTACAACTCTTTTA 57.108 40.909 0.00 0.00 44.76 1.52
265 266 3.778954 AGGCAGAGCTACAACTCTTTT 57.221 42.857 0.00 0.00 44.76 2.27
266 267 3.778954 AAGGCAGAGCTACAACTCTTT 57.221 42.857 0.00 0.00 44.76 2.52
267 268 3.778954 AAAGGCAGAGCTACAACTCTT 57.221 42.857 0.00 0.00 44.76 2.85
269 270 2.413453 CGAAAAGGCAGAGCTACAACTC 59.587 50.000 0.00 0.00 36.91 3.01
270 271 2.037251 TCGAAAAGGCAGAGCTACAACT 59.963 45.455 0.00 0.00 0.00 3.16
271 272 2.413453 CTCGAAAAGGCAGAGCTACAAC 59.587 50.000 0.00 0.00 0.00 3.32
272 273 2.037251 ACTCGAAAAGGCAGAGCTACAA 59.963 45.455 0.00 0.00 35.56 2.41
274 275 2.263945 GACTCGAAAAGGCAGAGCTAC 58.736 52.381 0.00 0.00 35.56 3.58
275 276 1.893137 TGACTCGAAAAGGCAGAGCTA 59.107 47.619 0.00 0.00 38.45 3.32
276 277 0.681733 TGACTCGAAAAGGCAGAGCT 59.318 50.000 0.00 0.00 38.45 4.09
277 278 3.217242 TGACTCGAAAAGGCAGAGC 57.783 52.632 0.00 0.00 38.45 4.09
282 283 2.927553 ATGCAATGACTCGAAAAGGC 57.072 45.000 0.00 0.00 0.00 4.35
283 284 6.146837 CCTCTATATGCAATGACTCGAAAAGG 59.853 42.308 0.00 0.00 0.00 3.11
284 285 6.146837 CCCTCTATATGCAATGACTCGAAAAG 59.853 42.308 0.00 0.00 0.00 2.27
285 286 5.991606 CCCTCTATATGCAATGACTCGAAAA 59.008 40.000 0.00 0.00 0.00 2.29
289 290 4.790765 TCCCTCTATATGCAATGACTCG 57.209 45.455 0.00 0.00 0.00 4.18
313 314 9.744468 GGTTGTATGTTGTAATGAAGAAGTTTT 57.256 29.630 0.00 0.00 0.00 2.43
314 315 8.073768 CGGTTGTATGTTGTAATGAAGAAGTTT 58.926 33.333 0.00 0.00 0.00 2.66
315 316 7.581476 CGGTTGTATGTTGTAATGAAGAAGTT 58.419 34.615 0.00 0.00 0.00 2.66
316 317 6.348213 GCGGTTGTATGTTGTAATGAAGAAGT 60.348 38.462 0.00 0.00 0.00 3.01
317 318 6.021596 GCGGTTGTATGTTGTAATGAAGAAG 58.978 40.000 0.00 0.00 0.00 2.85
318 319 5.470437 TGCGGTTGTATGTTGTAATGAAGAA 59.530 36.000 0.00 0.00 0.00 2.52
319 320 4.998033 TGCGGTTGTATGTTGTAATGAAGA 59.002 37.500 0.00 0.00 0.00 2.87
320 321 5.289917 TGCGGTTGTATGTTGTAATGAAG 57.710 39.130 0.00 0.00 0.00 3.02
321 322 5.690997 TTGCGGTTGTATGTTGTAATGAA 57.309 34.783 0.00 0.00 0.00 2.57
322 323 5.888691 ATTGCGGTTGTATGTTGTAATGA 57.111 34.783 0.00 0.00 0.00 2.57
323 324 7.539022 TGTTTATTGCGGTTGTATGTTGTAATG 59.461 33.333 0.00 0.00 0.00 1.90
324 325 7.539366 GTGTTTATTGCGGTTGTATGTTGTAAT 59.461 33.333 0.00 0.00 0.00 1.89
325 326 6.856938 GTGTTTATTGCGGTTGTATGTTGTAA 59.143 34.615 0.00 0.00 0.00 2.41
328 329 5.215903 TGTGTTTATTGCGGTTGTATGTTG 58.784 37.500 0.00 0.00 0.00 3.33
329 330 5.440234 TGTGTTTATTGCGGTTGTATGTT 57.560 34.783 0.00 0.00 0.00 2.71
330 331 5.637006 ATGTGTTTATTGCGGTTGTATGT 57.363 34.783 0.00 0.00 0.00 2.29
332 333 8.627487 CAATAATGTGTTTATTGCGGTTGTAT 57.373 30.769 5.44 0.00 46.09 2.29
334 335 6.942886 CAATAATGTGTTTATTGCGGTTGT 57.057 33.333 5.44 0.00 46.09 3.32
352 353 9.498176 TGCTCGATATAGAGTACTGTACAATAA 57.502 33.333 19.27 3.25 40.26 1.40
353 354 9.498176 TTGCTCGATATAGAGTACTGTACAATA 57.502 33.333 19.27 13.29 40.26 1.90
355 356 7.797038 TTGCTCGATATAGAGTACTGTACAA 57.203 36.000 19.27 5.58 40.26 2.41
356 357 7.797038 TTTGCTCGATATAGAGTACTGTACA 57.203 36.000 19.27 0.00 40.26 2.90
369 370 7.227910 ACGGTTAACCAAATATTTGCTCGATAT 59.772 33.333 24.14 5.56 36.86 1.63
381 382 4.586884 TGGCATGTACGGTTAACCAAATA 58.413 39.130 24.14 10.36 35.14 1.40
426 427 9.077885 ACCTCATTAAGCAAGAATTAAACTGAA 57.922 29.630 0.00 0.00 0.00 3.02
498 522 1.779221 TGCCTCATTAGCATTTGGGG 58.221 50.000 0.00 0.00 36.50 4.96
655 681 0.679960 ATCTGGTAGCCAAAACCGCC 60.680 55.000 0.00 0.00 40.08 6.13
703 729 3.554934 TGTTTCTGCATTGAGACAAGGT 58.445 40.909 0.00 0.00 29.84 3.50
895 2388 4.153835 CGGCTATACTACTAGGCAGTACAC 59.846 50.000 8.23 2.84 42.73 2.90
905 2398 4.225492 AGGAGCAGATCGGCTATACTACTA 59.775 45.833 20.70 0.00 45.99 1.82
907 2400 3.349022 AGGAGCAGATCGGCTATACTAC 58.651 50.000 20.70 6.87 45.99 2.73
913 2406 1.152943 ACGAGGAGCAGATCGGCTA 60.153 57.895 20.70 0.00 45.99 3.93
972 2465 1.982958 AGGACGTGTTATTTCAGGGGT 59.017 47.619 0.00 0.00 0.00 4.95
989 2482 2.108075 TGCTTCCTGTTGGATGAAAGGA 59.892 45.455 0.00 0.00 42.81 3.36
991 2484 4.796038 ATTGCTTCCTGTTGGATGAAAG 57.204 40.909 0.00 0.00 42.81 2.62
994 2487 2.749076 CGAATTGCTTCCTGTTGGATGA 59.251 45.455 0.00 0.00 42.81 2.92
1023 2516 1.202580 CGTCTCCTTCCATGATGGGAC 60.203 57.143 12.26 9.44 38.32 4.46
1129 2622 1.846124 AAGAAAGGCCCGGGAGACA 60.846 57.895 29.31 0.00 0.00 3.41
1165 2658 1.666011 GAAGCAGGACCAGACGACA 59.334 57.895 0.00 0.00 0.00 4.35
1167 2660 1.228894 AGGAAGCAGGACCAGACGA 60.229 57.895 0.00 0.00 0.00 4.20
1316 2811 4.455533 GCGATTGCATTTACATGGGATCTA 59.544 41.667 0.00 0.00 42.15 1.98
1474 2974 4.166725 TGTCTCTCCCCATGAAATATGCTT 59.833 41.667 0.00 0.00 0.00 3.91
1475 2975 3.718434 TGTCTCTCCCCATGAAATATGCT 59.282 43.478 0.00 0.00 0.00 3.79
1485 2985 5.545723 CCAGTAATCTATTGTCTCTCCCCAT 59.454 44.000 0.00 0.00 0.00 4.00
1491 2991 5.069251 CCGTTCCCAGTAATCTATTGTCTCT 59.931 44.000 0.00 0.00 0.00 3.10
1499 2999 4.202223 GCTTGATCCGTTCCCAGTAATCTA 60.202 45.833 0.00 0.00 0.00 1.98
1503 3003 1.906574 AGCTTGATCCGTTCCCAGTAA 59.093 47.619 0.00 0.00 0.00 2.24
1513 3013 0.173481 TCAGAACCGAGCTTGATCCG 59.827 55.000 1.22 0.00 0.00 4.18
1525 3025 3.272574 TGCTTGGATCTCATCAGAACC 57.727 47.619 0.00 0.00 41.18 3.62
1595 3110 6.037610 GGAATGAATACCATCAGTTGAGTGAC 59.962 42.308 0.00 0.00 33.53 3.67
1598 3114 6.065976 TGGAATGAATACCATCAGTTGAGT 57.934 37.500 0.00 0.00 33.53 3.41
1616 3132 5.396884 GGTTAGAACTGGCACTAGATGGAAT 60.397 44.000 0.00 0.00 0.00 3.01
1629 3145 5.130477 AGTGTATGGGTATGGTTAGAACTGG 59.870 44.000 0.00 0.00 0.00 4.00
1634 3150 4.471747 TGCAAGTGTATGGGTATGGTTAGA 59.528 41.667 0.00 0.00 0.00 2.10
1651 3167 0.670162 AAGCTGTCGCAAATGCAAGT 59.330 45.000 6.18 0.00 42.21 3.16
1776 3296 2.880963 AGAACTCATCGGCTAGCTTC 57.119 50.000 15.72 8.53 0.00 3.86
1844 3364 0.460459 TTGGCGTGTTGAGTCGTCAA 60.460 50.000 0.66 0.66 46.56 3.18
1884 3404 2.442272 CCGTCATCCCCGTCCTCT 60.442 66.667 0.00 0.00 0.00 3.69
1890 3416 3.543641 GGTACCCCGTCATCCCCG 61.544 72.222 0.00 0.00 0.00 5.73
1929 3455 5.464069 TGAGGCATATAGTCTTCCCAACTA 58.536 41.667 0.00 0.00 33.94 2.24
1983 3518 4.487714 TTTTCGAGGGAGCATAACATCT 57.512 40.909 0.00 0.00 0.00 2.90
2037 3572 2.029290 GCCTTCTCCGTTGTAGAACTCA 60.029 50.000 0.86 0.00 0.00 3.41
2152 3687 5.244402 TCCAACAAGCTCATCAACATCATTT 59.756 36.000 0.00 0.00 0.00 2.32
2267 3806 3.998099 TGCATTTTCACCAACGAATGA 57.002 38.095 0.00 0.00 32.61 2.57
2283 3822 6.151648 AGTTACAAATAGCAACAGTCATGCAT 59.848 34.615 0.00 0.00 46.22 3.96
2285 3824 5.942872 AGTTACAAATAGCAACAGTCATGC 58.057 37.500 0.00 0.00 44.15 4.06
2329 5073 4.676986 GCATACGAGTCAATGTAGTGGTCA 60.677 45.833 0.00 0.00 0.00 4.02
2444 5188 4.041762 GTGTTCCCCCGGATGCCA 62.042 66.667 0.73 0.00 0.00 4.92
2445 5189 3.577334 TTGTGTTCCCCCGGATGCC 62.577 63.158 0.73 0.00 0.00 4.40
2453 5198 3.070302 TGCTTTTATTGGTTGTGTTCCCC 59.930 43.478 0.00 0.00 0.00 4.81
2468 5213 6.458232 TGTGCTTTCCTTACTTTGCTTTTA 57.542 33.333 0.00 0.00 0.00 1.52
2493 5238 1.879380 CCAAATGAAGACCGAGCACAA 59.121 47.619 0.00 0.00 0.00 3.33
2495 5240 1.523758 ACCAAATGAAGACCGAGCAC 58.476 50.000 0.00 0.00 0.00 4.40
2498 5243 5.376854 AAATGAACCAAATGAAGACCGAG 57.623 39.130 0.00 0.00 0.00 4.63
2502 5247 7.214467 TCCACTAAATGAACCAAATGAAGAC 57.786 36.000 0.00 0.00 0.00 3.01
2524 5269 9.326413 TGACTAAATTTATTTCTCCGAGAATCC 57.674 33.333 11.66 0.00 33.67 3.01
2592 8200 4.980573 ACTGTTGGTACATGTTGGTACAT 58.019 39.130 2.30 0.00 45.81 2.29
2593 8201 4.425180 ACTGTTGGTACATGTTGGTACA 57.575 40.909 2.30 3.63 44.26 2.90
2594 8202 5.061179 AGAACTGTTGGTACATGTTGGTAC 58.939 41.667 2.30 0.00 42.26 3.34
2595 8203 5.298989 AGAACTGTTGGTACATGTTGGTA 57.701 39.130 2.30 0.00 39.30 3.25
2596 8204 4.134563 GAGAACTGTTGGTACATGTTGGT 58.865 43.478 2.30 0.00 39.30 3.67
2597 8205 3.502211 GGAGAACTGTTGGTACATGTTGG 59.498 47.826 2.30 0.00 39.30 3.77
2598 8206 4.133820 TGGAGAACTGTTGGTACATGTTG 58.866 43.478 2.30 0.00 39.30 3.33
2599 8207 4.431416 TGGAGAACTGTTGGTACATGTT 57.569 40.909 2.30 0.00 39.30 2.71
2600 8208 4.102524 TCTTGGAGAACTGTTGGTACATGT 59.897 41.667 2.69 2.69 39.30 3.21
2601 8209 4.641396 TCTTGGAGAACTGTTGGTACATG 58.359 43.478 0.00 0.00 39.30 3.21
2602 8210 4.974645 TCTTGGAGAACTGTTGGTACAT 57.025 40.909 0.00 0.00 39.30 2.29
2603 8211 4.974645 ATCTTGGAGAACTGTTGGTACA 57.025 40.909 0.00 0.00 0.00 2.90
2604 8212 5.552178 AGAATCTTGGAGAACTGTTGGTAC 58.448 41.667 0.00 0.00 0.00 3.34
2605 8213 5.825593 AGAATCTTGGAGAACTGTTGGTA 57.174 39.130 0.00 0.00 0.00 3.25
2606 8214 4.713792 AGAATCTTGGAGAACTGTTGGT 57.286 40.909 0.00 0.00 0.00 3.67
2607 8215 6.409704 TGATAGAATCTTGGAGAACTGTTGG 58.590 40.000 0.00 0.00 0.00 3.77
2683 8322 6.100424 TGACACTGGGGTTCCAATTTATTTTT 59.900 34.615 0.00 0.00 43.51 1.94
2722 8365 7.428761 CCACTTCGTTATCTTCTACGAGTTTAG 59.571 40.741 0.00 0.00 46.10 1.85
2785 8428 7.035004 GCTGTAGTGAATTTTTGGCATCAATA 58.965 34.615 0.00 0.00 32.28 1.90
2854 8499 3.433306 TTTGAGTGGTTATGGAGTGGG 57.567 47.619 0.00 0.00 0.00 4.61
2891 8536 9.871238 TCCAAATAAAGAAGTACTACAGTCATC 57.129 33.333 0.00 0.00 0.00 2.92
2935 8581 9.849607 GTGTAGTTGTGAATCATAAATATCACG 57.150 33.333 3.47 0.00 43.91 4.35
2958 8604 7.700656 GTGAAAAATGTTTGTAAGCACTAGTGT 59.299 33.333 23.44 7.94 0.00 3.55
3067 8716 2.455674 ATTCTTTGGCGGAAAAAGGC 57.544 45.000 0.00 0.00 35.71 4.35
3069 8718 5.965922 AGGAATATTCTTTGGCGGAAAAAG 58.034 37.500 14.95 0.00 36.22 2.27
3074 8723 5.104693 TCAAGTAGGAATATTCTTTGGCGGA 60.105 40.000 14.95 3.41 0.00 5.54
3076 8725 6.483307 TCATCAAGTAGGAATATTCTTTGGCG 59.517 38.462 14.95 9.23 0.00 5.69
3135 8784 2.386661 ATCCAACGGTCTGTCATCAC 57.613 50.000 0.00 0.00 0.00 3.06
3143 8792 2.370849 AGGTGTGTTAATCCAACGGTCT 59.629 45.455 0.00 0.00 40.26 3.85
3147 8796 3.733727 GCAAAAGGTGTGTTAATCCAACG 59.266 43.478 0.00 0.00 40.26 4.10
3155 8804 6.706270 TTGTTTGAAAAGCAAAAGGTGTGTTA 59.294 30.769 0.00 0.00 44.12 2.41
3307 9037 5.407407 TTGGTTTGTTTAGTGGCTGAAAA 57.593 34.783 0.00 0.00 0.00 2.29
3345 9075 3.200958 AGTAGGTAGCCCTTTCCTTGA 57.799 47.619 0.00 0.00 42.66 3.02
3363 9093 1.978473 CTCAGCACCCACAGCTAGT 59.022 57.895 0.00 0.00 41.14 2.57
3366 9096 3.247648 AGCTCAGCACCCACAGCT 61.248 61.111 0.00 0.00 44.62 4.24
3394 9124 5.251764 CCAAGATCACACCTTCTTCTTCAT 58.748 41.667 0.00 0.00 29.85 2.57
3409 9139 2.819595 GCGCCGAAGCCAAGATCA 60.820 61.111 0.00 0.00 34.57 2.92
3411 9141 2.124570 ATGCGCCGAAGCCAAGAT 60.125 55.556 4.18 0.00 36.02 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.