Multiple sequence alignment - TraesCS6B01G421800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G421800 chr6B 100.000 3515 0 0 1 3515 692427264 692430778 0.000000e+00 6492
1 TraesCS6B01G421800 chr6B 90.359 1338 85 20 1119 2426 692338651 692339974 0.000000e+00 1716
2 TraesCS6B01G421800 chr6B 83.015 1990 228 56 548 2472 692258672 692260616 0.000000e+00 1701
3 TraesCS6B01G421800 chr6B 94.990 1038 27 14 1494 2517 692234347 692235373 0.000000e+00 1605
4 TraesCS6B01G421800 chr6B 87.200 625 43 25 652 1247 692233325 692233941 0.000000e+00 676
5 TraesCS6B01G421800 chr6B 92.500 440 17 5 687 1125 692337846 692338270 1.790000e-172 616
6 TraesCS6B01G421800 chr6B 93.846 260 13 3 1242 1500 692234060 692234317 4.250000e-104 388
7 TraesCS6B01G421800 chr6B 90.556 180 15 2 98 276 692335977 692336155 1.630000e-58 237
8 TraesCS6B01G421800 chr6B 93.269 104 6 1 278 381 692336393 692336495 6.080000e-33 152
9 TraesCS6B01G421800 chr6B 91.398 93 6 2 3 93 692335536 692335628 3.680000e-25 126
10 TraesCS6B01G421800 chr6A 91.576 3312 136 63 2 3253 601949121 601952349 0.000000e+00 4438
11 TraesCS6B01G421800 chr6A 85.623 1878 178 56 652 2473 601471949 601473790 0.000000e+00 1888
12 TraesCS6B01G421800 chr6A 84.542 1572 167 46 900 2420 601872357 601873903 0.000000e+00 1487
13 TraesCS6B01G421800 chr6A 87.591 411 40 5 517 924 601871931 601872333 1.910000e-127 466
14 TraesCS6B01G421800 chr6D 91.925 2935 123 57 1 2869 455250062 455252948 0.000000e+00 4002
15 TraesCS6B01G421800 chr6D 85.280 1943 188 53 548 2426 455133671 455135579 0.000000e+00 1914
16 TraesCS6B01G421800 chr6D 96.618 680 10 7 1494 2171 455099175 455099843 0.000000e+00 1116
17 TraesCS6B01G421800 chr6D 89.784 881 49 28 652 1500 455098275 455099146 0.000000e+00 1090
18 TraesCS6B01G421800 chr6D 87.770 556 20 22 2193 2738 455295218 455295735 1.080000e-169 606
19 TraesCS6B01G421800 chr6D 91.899 358 15 6 2174 2517 455099879 455100236 4.080000e-134 488
20 TraesCS6B01G421800 chr6D 83.881 335 33 9 2921 3254 455254392 455254706 2.050000e-77 300
21 TraesCS6B01G421800 chr6D 83.729 295 39 5 379 669 455097973 455098262 1.610000e-68 270
22 TraesCS6B01G421800 chr6D 81.848 303 35 11 11 302 455131338 455131631 1.630000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G421800 chr6B 692427264 692430778 3514 False 6492.000000 6492 100.0000 1 3515 1 chr6B.!!$F2 3514
1 TraesCS6B01G421800 chr6B 692258672 692260616 1944 False 1701.000000 1701 83.0150 548 2472 1 chr6B.!!$F1 1924
2 TraesCS6B01G421800 chr6B 692233325 692235373 2048 False 889.666667 1605 92.0120 652 2517 3 chr6B.!!$F3 1865
3 TraesCS6B01G421800 chr6B 692335536 692339974 4438 False 569.400000 1716 91.6164 3 2426 5 chr6B.!!$F4 2423
4 TraesCS6B01G421800 chr6A 601949121 601952349 3228 False 4438.000000 4438 91.5760 2 3253 1 chr6A.!!$F2 3251
5 TraesCS6B01G421800 chr6A 601471949 601473790 1841 False 1888.000000 1888 85.6230 652 2473 1 chr6A.!!$F1 1821
6 TraesCS6B01G421800 chr6A 601871931 601873903 1972 False 976.500000 1487 86.0665 517 2420 2 chr6A.!!$F3 1903
7 TraesCS6B01G421800 chr6D 455250062 455254706 4644 False 2151.000000 4002 87.9030 1 3254 2 chr6D.!!$F4 3253
8 TraesCS6B01G421800 chr6D 455131338 455135579 4241 False 1075.500000 1914 83.5640 11 2426 2 chr6D.!!$F3 2415
9 TraesCS6B01G421800 chr6D 455097973 455100236 2263 False 741.000000 1116 90.5075 379 2517 4 chr6D.!!$F2 2138
10 TraesCS6B01G421800 chr6D 455295218 455295735 517 False 606.000000 606 87.7700 2193 2738 1 chr6D.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 4320 1.203523 TGCACCAAAGCGACAACTTTT 59.796 42.857 0.0 0.0 37.78 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 7061 0.040157 TTGCTTGCACGACTTCATGC 60.04 50.0 0.0 0.0 42.4 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
438 3520 4.232091 TCAAGGAACTAAGGGTCTGAAGT 58.768 43.478 0.00 0.00 38.49 3.01
460 3542 3.648067 TGTCCTCTCAGTTGGAATGTCTT 59.352 43.478 0.00 0.00 33.72 3.01
511 3593 1.212935 CCACACCCCAAAGATCTAGGG 59.787 57.143 21.17 21.17 45.75 3.53
523 3605 3.592865 AGATCTAGGGGTTGGGAAGATC 58.407 50.000 0.00 0.00 0.00 2.75
524 3606 2.961536 TCTAGGGGTTGGGAAGATCA 57.038 50.000 0.00 0.00 0.00 2.92
625 4320 1.203523 TGCACCAAAGCGACAACTTTT 59.796 42.857 0.00 0.00 37.78 2.27
700 4425 4.541973 ATTCATTGCTGGAAACCCTTTC 57.458 40.909 0.00 0.00 38.94 2.62
803 4533 3.322862 TCCTGCCTATATAAAGCACCCA 58.677 45.455 3.55 0.00 32.06 4.51
804 4534 3.916349 TCCTGCCTATATAAAGCACCCAT 59.084 43.478 3.55 0.00 32.06 4.00
905 4635 3.460340 CCAGGAGTCTAGGGTTAGAGAGA 59.540 52.174 0.00 0.00 36.61 3.10
906 4636 4.445735 CCAGGAGTCTAGGGTTAGAGAGAG 60.446 54.167 0.00 0.00 36.61 3.20
907 4637 4.410883 CAGGAGTCTAGGGTTAGAGAGAGA 59.589 50.000 0.00 0.00 36.61 3.10
908 4638 4.658901 AGGAGTCTAGGGTTAGAGAGAGAG 59.341 50.000 0.00 0.00 36.61 3.20
909 4639 4.657039 GGAGTCTAGGGTTAGAGAGAGAGA 59.343 50.000 0.00 0.00 36.61 3.10
910 4640 5.221661 GGAGTCTAGGGTTAGAGAGAGAGAG 60.222 52.000 0.00 0.00 36.61 3.20
989 4806 5.641209 GCATCCATCTCACTGTTATACATCC 59.359 44.000 0.00 0.00 0.00 3.51
1069 4890 9.203163 GCCTACTAGGTATATTATTCTCACCAT 57.797 37.037 3.95 0.00 37.80 3.55
1082 4908 4.622260 TCTCACCATGAACAACAGATGA 57.378 40.909 0.00 0.00 0.00 2.92
1085 4911 2.160219 CACCATGAACAACAGATGACCG 59.840 50.000 0.00 0.00 0.00 4.79
1203 5420 7.436673 CCTTTTGCAGCGTCTATCTATATATCC 59.563 40.741 0.00 0.00 0.00 2.59
1257 5611 4.159244 AGTCTAGTACTGGCTCTAGTGG 57.841 50.000 5.39 0.00 36.93 4.00
1403 5780 7.386848 ACTCATCGCTAACTTTGCTAAACTTTA 59.613 33.333 0.00 0.00 0.00 1.85
1994 6428 3.904571 TCTTGTACGTGCGTCAACTAAT 58.095 40.909 0.00 0.00 0.00 1.73
1995 6429 4.300803 TCTTGTACGTGCGTCAACTAATT 58.699 39.130 0.00 0.00 0.00 1.40
1996 6430 5.459768 TCTTGTACGTGCGTCAACTAATTA 58.540 37.500 0.00 0.00 0.00 1.40
1997 6431 5.919707 TCTTGTACGTGCGTCAACTAATTAA 59.080 36.000 0.00 0.00 0.00 1.40
2011 6450 8.784043 GTCAACTAATTAACTTGATGTGTTCCT 58.216 33.333 7.98 0.00 0.00 3.36
2012 6451 9.349713 TCAACTAATTAACTTGATGTGTTCCTT 57.650 29.630 2.45 0.00 0.00 3.36
2013 6452 9.612620 CAACTAATTAACTTGATGTGTTCCTTC 57.387 33.333 0.00 0.00 0.00 3.46
2152 6591 2.744787 ATACGTCGCGGTAACTACAG 57.255 50.000 6.13 0.00 0.00 2.74
2179 6651 5.479027 ACAAACAACCCTTTCTACACAAACT 59.521 36.000 0.00 0.00 0.00 2.66
2382 6864 3.701604 GATCGACGTCGGCAAGGCT 62.702 63.158 35.05 12.91 40.29 4.58
2517 7011 3.531934 TCTGTCGACGTGGTCTAGATA 57.468 47.619 11.62 0.00 0.00 1.98
2518 7012 4.069300 TCTGTCGACGTGGTCTAGATAT 57.931 45.455 11.62 0.00 0.00 1.63
2519 7013 5.205759 TCTGTCGACGTGGTCTAGATATA 57.794 43.478 11.62 0.00 0.00 0.86
2520 7014 5.791666 TCTGTCGACGTGGTCTAGATATAT 58.208 41.667 11.62 0.00 0.00 0.86
2566 7071 3.263602 CATGGCTTATGCATGAAGTCG 57.736 47.619 10.16 0.00 41.91 4.18
2567 7072 2.401583 TGGCTTATGCATGAAGTCGT 57.598 45.000 10.16 0.00 41.91 4.34
2568 7073 2.009051 TGGCTTATGCATGAAGTCGTG 58.991 47.619 10.16 0.00 41.91 4.35
2576 7081 1.959747 CATGAAGTCGTGCAAGCAAG 58.040 50.000 0.00 0.00 0.00 4.01
2590 7095 5.649557 TGCAAGCAAGCATTAATATTCGTT 58.350 33.333 0.00 0.00 40.11 3.85
2591 7096 6.790282 TGCAAGCAAGCATTAATATTCGTTA 58.210 32.000 0.00 0.00 40.11 3.18
2592 7097 7.424803 TGCAAGCAAGCATTAATATTCGTTAT 58.575 30.769 0.00 0.00 40.11 1.89
2593 7098 7.920151 TGCAAGCAAGCATTAATATTCGTTATT 59.080 29.630 0.00 0.00 40.11 1.40
2594 7099 9.393249 GCAAGCAAGCATTAATATTCGTTATTA 57.607 29.630 0.00 0.00 32.66 0.98
2630 7136 9.581099 TCCTTTTCCAAGAAAAATAATATTCGC 57.419 29.630 4.26 0.00 30.57 4.70
2631 7137 9.364989 CCTTTTCCAAGAAAAATAATATTCGCA 57.635 29.630 4.26 0.00 30.57 5.10
2655 7161 4.320456 CGGTCTGCAGGTGCCTGT 62.320 66.667 15.13 0.00 45.24 4.00
2656 7162 2.942796 CGGTCTGCAGGTGCCTGTA 61.943 63.158 15.13 13.60 45.24 2.74
2657 7163 1.376037 GGTCTGCAGGTGCCTGTAC 60.376 63.158 15.13 13.66 45.24 2.90
2658 7164 1.376037 GTCTGCAGGTGCCTGTACC 60.376 63.158 15.13 4.09 45.24 3.34
2700 7206 9.425577 TGTAAAACAAACTACGTATGATGATGA 57.574 29.630 0.00 0.00 0.00 2.92
2707 7223 2.688507 ACGTATGATGATGATTCGGCC 58.311 47.619 0.00 0.00 0.00 6.13
2912 8855 9.533831 TTTAGCAAAATTCTCTATTTTCCCTCT 57.466 29.630 0.00 0.00 43.00 3.69
3054 9003 6.391227 AGTACCATGAGTTTTTCTGGTTTG 57.609 37.500 0.00 0.00 37.96 2.93
3103 9052 3.181437 ACCCAAAAACGGTTCCTGACTAT 60.181 43.478 0.00 0.00 0.00 2.12
3104 9053 4.041938 ACCCAAAAACGGTTCCTGACTATA 59.958 41.667 0.00 0.00 0.00 1.31
3137 9090 1.539560 CCGGCCGATCTCAGATCCAT 61.540 60.000 30.73 0.00 0.00 3.41
3204 9157 1.462731 GGTGCCATGGTTGTTGCTCA 61.463 55.000 14.67 0.00 0.00 4.26
3215 9168 0.250684 TGTTGCTCAATCAGGCCGAA 60.251 50.000 0.00 0.00 0.00 4.30
3249 9202 1.149627 CACAAACACGGGAGGGGAA 59.850 57.895 0.00 0.00 37.82 3.97
3271 9224 4.308458 CACGCCACTTCCACGGGA 62.308 66.667 0.00 0.00 29.87 5.14
3272 9225 4.003788 ACGCCACTTCCACGGGAG 62.004 66.667 0.00 0.00 31.21 4.30
3273 9226 4.760047 CGCCACTTCCACGGGAGG 62.760 72.222 0.00 0.00 34.79 4.30
3275 9228 4.410400 CCACTTCCACGGGAGGCC 62.410 72.222 0.00 0.00 31.55 5.19
3276 9229 4.760047 CACTTCCACGGGAGGCCG 62.760 72.222 0.00 0.00 31.55 6.13
3278 9231 3.702048 CTTCCACGGGAGGCCGAA 61.702 66.667 0.00 0.00 36.94 4.30
3279 9232 3.006728 TTCCACGGGAGGCCGAAT 61.007 61.111 0.00 0.00 36.94 3.34
3280 9233 2.925162 CTTCCACGGGAGGCCGAATC 62.925 65.000 0.00 0.00 36.94 2.52
3281 9234 4.891727 CCACGGGAGGCCGAATCG 62.892 72.222 0.00 2.96 36.94 3.34
3298 9251 4.154613 GGAGACGCAGAAGACGTG 57.845 61.111 0.00 0.00 45.24 4.49
3299 9252 1.444553 GGAGACGCAGAAGACGTGG 60.445 63.158 0.00 0.00 45.24 4.94
3300 9253 1.444553 GAGACGCAGAAGACGTGGG 60.445 63.158 0.00 0.00 45.24 4.61
3301 9254 2.143594 GAGACGCAGAAGACGTGGGT 62.144 60.000 0.00 0.00 45.24 4.51
3302 9255 2.022129 GACGCAGAAGACGTGGGTG 61.022 63.158 0.00 0.00 45.24 4.61
3303 9256 2.338620 CGCAGAAGACGTGGGTGA 59.661 61.111 0.00 0.00 0.00 4.02
3304 9257 2.022129 CGCAGAAGACGTGGGTGAC 61.022 63.158 0.00 0.00 0.00 3.67
3312 9265 3.760035 CGTGGGTGACGGAGGAGG 61.760 72.222 0.00 0.00 44.85 4.30
3313 9266 2.283676 GTGGGTGACGGAGGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
3314 9267 1.686110 GTGGGTGACGGAGGAGGAT 60.686 63.158 0.00 0.00 0.00 3.24
3315 9268 1.381327 TGGGTGACGGAGGAGGATC 60.381 63.158 0.00 0.00 0.00 3.36
3316 9269 1.381327 GGGTGACGGAGGAGGATCA 60.381 63.158 0.00 0.00 36.25 2.92
3317 9270 1.395826 GGGTGACGGAGGAGGATCAG 61.396 65.000 0.00 0.00 36.25 2.90
3318 9271 1.395826 GGTGACGGAGGAGGATCAGG 61.396 65.000 0.00 0.00 36.25 3.86
3319 9272 0.684805 GTGACGGAGGAGGATCAGGT 60.685 60.000 0.00 0.00 36.25 4.00
3320 9273 0.684479 TGACGGAGGAGGATCAGGTG 60.684 60.000 0.00 0.00 36.25 4.00
3321 9274 0.395862 GACGGAGGAGGATCAGGTGA 60.396 60.000 0.00 0.00 36.25 4.02
3322 9275 0.684805 ACGGAGGAGGATCAGGTGAC 60.685 60.000 0.00 0.00 36.25 3.67
3323 9276 1.395826 CGGAGGAGGATCAGGTGACC 61.396 65.000 0.00 0.00 36.25 4.02
3324 9277 0.031616 GGAGGAGGATCAGGTGACCT 60.032 60.000 0.00 0.00 36.25 3.85
3325 9278 1.408969 GAGGAGGATCAGGTGACCTC 58.591 60.000 0.00 15.08 46.44 3.85
3327 9280 3.192799 GAGGATCAGGTGACCTCGA 57.807 57.895 0.00 3.49 40.28 4.04
3328 9281 0.741915 GAGGATCAGGTGACCTCGAC 59.258 60.000 0.00 0.00 40.28 4.20
3329 9282 0.039764 AGGATCAGGTGACCTCGACA 59.960 55.000 0.00 0.00 0.00 4.35
3330 9283 0.173708 GGATCAGGTGACCTCGACAC 59.826 60.000 0.00 1.99 37.51 3.67
3335 9288 3.986006 GTGACCTCGACACCCGCA 61.986 66.667 0.00 0.00 38.37 5.69
3336 9289 3.680786 TGACCTCGACACCCGCAG 61.681 66.667 0.00 0.00 38.37 5.18
3352 9305 4.760220 AGGGTTGGAGGGCGGGAT 62.760 66.667 0.00 0.00 0.00 3.85
3353 9306 4.506255 GGGTTGGAGGGCGGGATG 62.506 72.222 0.00 0.00 0.00 3.51
3354 9307 3.407967 GGTTGGAGGGCGGGATGA 61.408 66.667 0.00 0.00 0.00 2.92
3355 9308 2.674754 GTTGGAGGGCGGGATGAA 59.325 61.111 0.00 0.00 0.00 2.57
3356 9309 1.452108 GTTGGAGGGCGGGATGAAG 60.452 63.158 0.00 0.00 0.00 3.02
3357 9310 1.923395 TTGGAGGGCGGGATGAAGT 60.923 57.895 0.00 0.00 0.00 3.01
3358 9311 2.190578 GGAGGGCGGGATGAAGTG 59.809 66.667 0.00 0.00 0.00 3.16
3359 9312 2.190578 GAGGGCGGGATGAAGTGG 59.809 66.667 0.00 0.00 0.00 4.00
3360 9313 2.610859 AGGGCGGGATGAAGTGGT 60.611 61.111 0.00 0.00 0.00 4.16
3361 9314 2.124695 GGGCGGGATGAAGTGGTC 60.125 66.667 0.00 0.00 0.00 4.02
3362 9315 2.511600 GGCGGGATGAAGTGGTCG 60.512 66.667 0.00 0.00 0.00 4.79
3363 9316 2.577059 GCGGGATGAAGTGGTCGA 59.423 61.111 0.00 0.00 0.00 4.20
3364 9317 1.079405 GCGGGATGAAGTGGTCGAA 60.079 57.895 0.00 0.00 0.00 3.71
3365 9318 1.084370 GCGGGATGAAGTGGTCGAAG 61.084 60.000 0.00 0.00 0.00 3.79
3366 9319 0.460284 CGGGATGAAGTGGTCGAAGG 60.460 60.000 0.00 0.00 0.00 3.46
3367 9320 0.902531 GGGATGAAGTGGTCGAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
3368 9321 1.134670 GGGATGAAGTGGTCGAAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
3369 9322 1.550976 GGATGAAGTGGTCGAAGGAGT 59.449 52.381 0.00 0.00 0.00 3.85
3370 9323 2.758979 GGATGAAGTGGTCGAAGGAGTA 59.241 50.000 0.00 0.00 0.00 2.59
3371 9324 3.181485 GGATGAAGTGGTCGAAGGAGTAG 60.181 52.174 0.00 0.00 0.00 2.57
3372 9325 2.168496 TGAAGTGGTCGAAGGAGTAGG 58.832 52.381 0.00 0.00 0.00 3.18
3373 9326 0.896226 AAGTGGTCGAAGGAGTAGGC 59.104 55.000 0.00 0.00 0.00 3.93
3374 9327 0.251653 AGTGGTCGAAGGAGTAGGCA 60.252 55.000 0.00 0.00 0.00 4.75
3375 9328 0.824759 GTGGTCGAAGGAGTAGGCAT 59.175 55.000 0.00 0.00 0.00 4.40
3376 9329 0.824109 TGGTCGAAGGAGTAGGCATG 59.176 55.000 0.00 0.00 0.00 4.06
3377 9330 0.530870 GGTCGAAGGAGTAGGCATGC 60.531 60.000 9.90 9.90 0.00 4.06
3378 9331 0.461961 GTCGAAGGAGTAGGCATGCT 59.538 55.000 18.92 6.26 0.00 3.79
3379 9332 1.134670 GTCGAAGGAGTAGGCATGCTT 60.135 52.381 18.92 13.45 0.00 3.91
3380 9333 1.134699 TCGAAGGAGTAGGCATGCTTG 60.135 52.381 18.92 0.00 0.00 4.01
3381 9334 1.134699 CGAAGGAGTAGGCATGCTTGA 60.135 52.381 18.92 0.00 0.00 3.02
3382 9335 2.484417 CGAAGGAGTAGGCATGCTTGAT 60.484 50.000 18.92 2.65 0.00 2.57
3383 9336 2.634815 AGGAGTAGGCATGCTTGATG 57.365 50.000 18.92 0.00 34.84 3.07
3384 9337 2.121948 AGGAGTAGGCATGCTTGATGA 58.878 47.619 18.92 0.00 33.31 2.92
3385 9338 2.104451 AGGAGTAGGCATGCTTGATGAG 59.896 50.000 18.92 0.00 33.31 2.90
3386 9339 2.492012 GAGTAGGCATGCTTGATGAGG 58.508 52.381 18.92 0.00 33.31 3.86
3387 9340 1.842562 AGTAGGCATGCTTGATGAGGT 59.157 47.619 18.92 0.00 33.31 3.85
3388 9341 2.158842 AGTAGGCATGCTTGATGAGGTC 60.159 50.000 18.92 0.00 33.31 3.85
3389 9342 0.463295 AGGCATGCTTGATGAGGTCG 60.463 55.000 18.92 0.00 33.31 4.79
3390 9343 1.442526 GGCATGCTTGATGAGGTCGG 61.443 60.000 18.92 0.00 33.31 4.79
3391 9344 0.462581 GCATGCTTGATGAGGTCGGA 60.463 55.000 11.37 0.00 33.31 4.55
3392 9345 1.293924 CATGCTTGATGAGGTCGGAC 58.706 55.000 0.00 0.00 33.31 4.79
3393 9346 1.134580 CATGCTTGATGAGGTCGGACT 60.135 52.381 8.23 0.00 33.31 3.85
3394 9347 0.247460 TGCTTGATGAGGTCGGACTG 59.753 55.000 8.23 0.00 0.00 3.51
3395 9348 0.460987 GCTTGATGAGGTCGGACTGG 60.461 60.000 8.23 0.00 0.00 4.00
3396 9349 1.186200 CTTGATGAGGTCGGACTGGA 58.814 55.000 8.23 0.00 0.00 3.86
3397 9350 1.135915 CTTGATGAGGTCGGACTGGAG 59.864 57.143 8.23 0.00 0.00 3.86
3398 9351 1.323271 TGATGAGGTCGGACTGGAGC 61.323 60.000 8.23 0.00 34.71 4.70
3399 9352 1.000993 ATGAGGTCGGACTGGAGCT 59.999 57.895 8.23 0.00 46.68 4.09
3400 9353 1.326213 ATGAGGTCGGACTGGAGCTG 61.326 60.000 8.23 0.00 44.25 4.24
3401 9354 2.681778 AGGTCGGACTGGAGCTGG 60.682 66.667 8.23 0.00 42.74 4.85
3402 9355 2.997897 GGTCGGACTGGAGCTGGT 60.998 66.667 8.23 0.00 0.00 4.00
3403 9356 2.262915 GTCGGACTGGAGCTGGTG 59.737 66.667 0.00 0.00 0.00 4.17
3404 9357 2.997315 TCGGACTGGAGCTGGTGG 60.997 66.667 0.00 0.00 0.00 4.61
3405 9358 2.997315 CGGACTGGAGCTGGTGGA 60.997 66.667 0.00 0.00 0.00 4.02
3406 9359 2.985456 GGACTGGAGCTGGTGGAG 59.015 66.667 0.00 0.00 0.00 3.86
3407 9360 2.664081 GGACTGGAGCTGGTGGAGG 61.664 68.421 0.00 0.00 0.00 4.30
3408 9361 1.915769 GACTGGAGCTGGTGGAGGT 60.916 63.158 0.00 0.00 34.09 3.85
3409 9362 1.462238 ACTGGAGCTGGTGGAGGTT 60.462 57.895 0.00 0.00 30.42 3.50
3410 9363 0.178903 ACTGGAGCTGGTGGAGGTTA 60.179 55.000 0.00 0.00 30.42 2.85
3411 9364 1.207791 CTGGAGCTGGTGGAGGTTAT 58.792 55.000 0.00 0.00 30.42 1.89
3412 9365 0.911769 TGGAGCTGGTGGAGGTTATG 59.088 55.000 0.00 0.00 30.42 1.90
3413 9366 0.181350 GGAGCTGGTGGAGGTTATGG 59.819 60.000 0.00 0.00 30.42 2.74
3414 9367 0.181350 GAGCTGGTGGAGGTTATGGG 59.819 60.000 0.00 0.00 30.42 4.00
3415 9368 1.453928 GCTGGTGGAGGTTATGGGC 60.454 63.158 0.00 0.00 0.00 5.36
3416 9369 1.227383 CTGGTGGAGGTTATGGGCC 59.773 63.158 0.00 0.00 0.00 5.80
3417 9370 1.230149 TGGTGGAGGTTATGGGCCT 60.230 57.895 4.53 0.00 39.42 5.19
3418 9371 0.045008 TGGTGGAGGTTATGGGCCTA 59.955 55.000 4.53 0.00 36.29 3.93
3419 9372 1.346046 TGGTGGAGGTTATGGGCCTAT 60.346 52.381 6.88 6.88 36.29 2.57
3420 9373 1.073923 GGTGGAGGTTATGGGCCTATG 59.926 57.143 12.67 0.00 36.29 2.23
3421 9374 1.774856 GTGGAGGTTATGGGCCTATGT 59.225 52.381 12.67 0.00 36.29 2.29
3422 9375 1.774254 TGGAGGTTATGGGCCTATGTG 59.226 52.381 12.67 0.00 36.29 3.21
3423 9376 1.073923 GGAGGTTATGGGCCTATGTGG 59.926 57.143 12.67 0.00 36.29 4.17
3424 9377 2.054799 GAGGTTATGGGCCTATGTGGA 58.945 52.381 12.67 0.00 36.29 4.02
3425 9378 2.039084 GAGGTTATGGGCCTATGTGGAG 59.961 54.545 12.67 0.00 36.29 3.86
3426 9379 2.054799 GGTTATGGGCCTATGTGGAGA 58.945 52.381 12.67 0.00 38.35 3.71
3427 9380 2.039084 GGTTATGGGCCTATGTGGAGAG 59.961 54.545 12.67 0.00 38.35 3.20
3428 9381 2.030027 TATGGGCCTATGTGGAGAGG 57.970 55.000 12.67 0.00 38.35 3.69
3429 9382 0.268869 ATGGGCCTATGTGGAGAGGA 59.731 55.000 0.00 0.00 38.35 3.71
3430 9383 0.044092 TGGGCCTATGTGGAGAGGAA 59.956 55.000 4.53 0.00 38.35 3.36
3431 9384 0.761802 GGGCCTATGTGGAGAGGAAG 59.238 60.000 0.84 0.00 38.35 3.46
3432 9385 1.692762 GGGCCTATGTGGAGAGGAAGA 60.693 57.143 0.84 0.00 38.35 2.87
3433 9386 2.119495 GGCCTATGTGGAGAGGAAGAA 58.881 52.381 0.00 0.00 38.35 2.52
3434 9387 2.103941 GGCCTATGTGGAGAGGAAGAAG 59.896 54.545 0.00 0.00 38.35 2.85
3435 9388 2.484594 GCCTATGTGGAGAGGAAGAAGC 60.485 54.545 0.00 0.00 38.35 3.86
3436 9389 2.103941 CCTATGTGGAGAGGAAGAAGCC 59.896 54.545 0.00 0.00 38.35 4.35
3437 9390 0.539051 ATGTGGAGAGGAAGAAGCCG 59.461 55.000 0.00 0.00 0.00 5.52
3438 9391 0.541998 TGTGGAGAGGAAGAAGCCGA 60.542 55.000 0.00 0.00 0.00 5.54
3439 9392 0.608640 GTGGAGAGGAAGAAGCCGAA 59.391 55.000 0.00 0.00 0.00 4.30
3440 9393 1.208293 GTGGAGAGGAAGAAGCCGAAT 59.792 52.381 0.00 0.00 0.00 3.34
3441 9394 1.482593 TGGAGAGGAAGAAGCCGAATC 59.517 52.381 0.00 0.00 0.00 2.52
3442 9395 1.537135 GGAGAGGAAGAAGCCGAATCG 60.537 57.143 0.00 0.00 0.00 3.34
3457 9410 4.315588 TCGGAAGAGGTCGAGGTC 57.684 61.111 0.00 0.00 34.84 3.85
3458 9411 1.744368 TCGGAAGAGGTCGAGGTCG 60.744 63.158 0.00 0.00 36.71 4.79
3459 9412 2.762234 CGGAAGAGGTCGAGGTCGG 61.762 68.421 0.00 0.00 40.29 4.79
3460 9413 2.416432 GGAAGAGGTCGAGGTCGGG 61.416 68.421 0.00 0.00 40.29 5.14
3461 9414 3.066233 GAAGAGGTCGAGGTCGGGC 62.066 68.421 0.00 0.00 40.29 6.13
3484 9437 5.023551 GCTCAGGCGATACATTTTATCAC 57.976 43.478 0.00 0.00 0.00 3.06
3485 9438 4.511454 GCTCAGGCGATACATTTTATCACA 59.489 41.667 0.00 0.00 0.00 3.58
3486 9439 5.180117 GCTCAGGCGATACATTTTATCACAT 59.820 40.000 0.00 0.00 0.00 3.21
3487 9440 6.293626 GCTCAGGCGATACATTTTATCACATT 60.294 38.462 0.00 0.00 0.00 2.71
3488 9441 7.566760 TCAGGCGATACATTTTATCACATTT 57.433 32.000 0.00 0.00 0.00 2.32
3489 9442 7.995289 TCAGGCGATACATTTTATCACATTTT 58.005 30.769 0.00 0.00 0.00 1.82
3490 9443 8.465999 TCAGGCGATACATTTTATCACATTTTT 58.534 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 474 9.802039 TCAAATAATGTTAGTCACCTTAACCTT 57.198 29.630 0.00 0.00 0.00 3.50
332 2166 8.918202 TTTCCTTGTCAGTGTTTAGACATAAT 57.082 30.769 0.00 0.00 43.57 1.28
390 3469 9.899226 AATTTACTGAAAGAAATGTCTTACAGC 57.101 29.630 0.00 0.00 43.59 4.40
438 3520 3.242867 AGACATTCCAACTGAGAGGACA 58.757 45.455 0.00 0.00 32.62 4.02
460 3542 3.334691 CCAGAGAAGTGCGAACCAAATA 58.665 45.455 0.00 0.00 0.00 1.40
511 3593 4.637977 GTCATTCTTCTGATCTTCCCAACC 59.362 45.833 0.00 0.00 0.00 3.77
512 3594 4.331168 CGTCATTCTTCTGATCTTCCCAAC 59.669 45.833 0.00 0.00 0.00 3.77
523 3605 3.740832 TGTTGCACTACGTCATTCTTCTG 59.259 43.478 0.00 0.00 0.00 3.02
524 3606 3.741344 GTGTTGCACTACGTCATTCTTCT 59.259 43.478 0.00 0.00 0.00 2.85
803 4533 6.016555 AGCCTGAATTGTAAGGTTGGTAAAT 58.983 36.000 0.00 0.00 35.86 1.40
804 4534 5.390387 AGCCTGAATTGTAAGGTTGGTAAA 58.610 37.500 0.00 0.00 35.86 2.01
864 4594 0.683504 GTGGAGCGAAGGGAGAGGTA 60.684 60.000 0.00 0.00 0.00 3.08
905 4635 1.202417 CGTCTCGCTCTCTCTCTCTCT 60.202 57.143 0.00 0.00 0.00 3.10
906 4636 1.202371 TCGTCTCGCTCTCTCTCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
907 4637 0.821517 TCGTCTCGCTCTCTCTCTCT 59.178 55.000 0.00 0.00 0.00 3.10
908 4638 1.209128 CTCGTCTCGCTCTCTCTCTC 58.791 60.000 0.00 0.00 0.00 3.20
909 4639 0.810031 GCTCGTCTCGCTCTCTCTCT 60.810 60.000 0.00 0.00 0.00 3.10
910 4640 1.087202 TGCTCGTCTCGCTCTCTCTC 61.087 60.000 0.00 0.00 0.00 3.20
1069 4890 2.900716 TGTCGGTCATCTGTTGTTCA 57.099 45.000 0.00 0.00 0.00 3.18
1082 4908 4.579647 AATACAAGGGGTAATTGTCGGT 57.420 40.909 0.00 0.00 41.08 4.69
1203 5420 9.459640 CAATTAATCAATCAGTGGCAAAGATAG 57.540 33.333 3.68 0.00 0.00 2.08
1247 5601 0.755686 AGCTACATGCCACTAGAGCC 59.244 55.000 0.00 0.00 44.23 4.70
1257 5611 3.929948 GCGCACCGAGCTACATGC 61.930 66.667 0.30 5.66 42.61 4.06
1275 5629 7.196331 TGTTGTTGTTTCTTTTTGGGTTTTTG 58.804 30.769 0.00 0.00 0.00 2.44
1276 5630 7.334844 TGTTGTTGTTTCTTTTTGGGTTTTT 57.665 28.000 0.00 0.00 0.00 1.94
1403 5780 1.007038 CACGTTGCCTGCAAAGCAT 60.007 52.632 15.99 0.00 40.59 3.79
1852 6278 2.755876 ATCCAGCCGAGCGAGACA 60.756 61.111 0.00 0.00 0.00 3.41
1994 6428 6.264518 GGAAAGGAAGGAACACATCAAGTTAA 59.735 38.462 0.00 0.00 0.00 2.01
1995 6429 5.768164 GGAAAGGAAGGAACACATCAAGTTA 59.232 40.000 0.00 0.00 0.00 2.24
1996 6430 4.584743 GGAAAGGAAGGAACACATCAAGTT 59.415 41.667 0.00 0.00 0.00 2.66
1997 6431 4.145052 GGAAAGGAAGGAACACATCAAGT 58.855 43.478 0.00 0.00 0.00 3.16
2013 6452 1.192146 TGACTCGTCCCTGGGAAAGG 61.192 60.000 19.06 12.32 46.94 3.11
2152 6591 4.109766 GTGTAGAAAGGGTTGTTTGTTGC 58.890 43.478 0.00 0.00 0.00 4.17
2368 6850 3.112709 GTCAGCCTTGCCGACGTC 61.113 66.667 5.18 5.18 0.00 4.34
2382 6864 2.734723 GCGCACGAGCTCTTGTCA 60.735 61.111 20.13 0.00 39.10 3.58
2442 6924 4.166888 GCAGCGCATCTCCTGGGA 62.167 66.667 11.47 0.00 40.13 4.37
2482 6976 0.110486 ACAGAACGGGCAAAGTCCAT 59.890 50.000 0.00 0.00 0.00 3.41
2546 7051 2.615447 ACGACTTCATGCATAAGCCATG 59.385 45.455 0.00 0.00 41.13 3.66
2547 7052 2.615447 CACGACTTCATGCATAAGCCAT 59.385 45.455 0.00 0.00 41.13 4.40
2548 7053 2.009051 CACGACTTCATGCATAAGCCA 58.991 47.619 0.00 0.00 41.13 4.75
2549 7054 1.268234 GCACGACTTCATGCATAAGCC 60.268 52.381 0.00 0.00 41.65 4.35
2556 7061 0.040157 TTGCTTGCACGACTTCATGC 60.040 50.000 0.00 0.00 42.40 4.06
2557 7062 1.959747 CTTGCTTGCACGACTTCATG 58.040 50.000 0.00 0.00 0.00 3.07
2558 7063 0.239347 GCTTGCTTGCACGACTTCAT 59.761 50.000 3.25 0.00 0.00 2.57
2559 7064 1.094650 TGCTTGCTTGCACGACTTCA 61.095 50.000 3.25 0.00 38.12 3.02
2560 7065 0.239347 ATGCTTGCTTGCACGACTTC 59.761 50.000 6.36 0.00 46.33 3.01
2561 7066 0.670162 AATGCTTGCTTGCACGACTT 59.330 45.000 6.36 0.00 46.33 3.01
2562 7067 1.522668 TAATGCTTGCTTGCACGACT 58.477 45.000 6.36 0.00 46.33 4.18
2563 7068 2.330231 TTAATGCTTGCTTGCACGAC 57.670 45.000 6.36 0.00 46.33 4.34
2564 7069 4.898829 ATATTAATGCTTGCTTGCACGA 57.101 36.364 6.36 0.00 46.33 4.35
2565 7070 4.145243 CGAATATTAATGCTTGCTTGCACG 59.855 41.667 6.36 0.00 46.33 5.34
2566 7071 5.036737 ACGAATATTAATGCTTGCTTGCAC 58.963 37.500 6.36 0.00 46.33 4.57
2567 7072 7.920151 AATAACGAATATTAATGCTTGCTTGCA 59.080 29.630 6.66 6.66 38.64 4.08
2568 7073 7.858052 ATAACGAATATTAATGCTTGCTTGC 57.142 32.000 0.00 0.00 0.00 4.01
2605 7110 9.364989 TGCGAATATTATTTTTCTTGGAAAAGG 57.635 29.630 5.74 0.00 32.54 3.11
2632 7138 3.941188 ACCTGCAGACCGTGGTGG 61.941 66.667 17.39 0.00 46.41 4.61
2699 7205 1.067582 CTACGACCCAGGCCGAATC 59.932 63.158 0.00 0.00 0.00 2.52
2700 7206 2.432300 CCTACGACCCAGGCCGAAT 61.432 63.158 0.00 0.00 0.00 3.34
2701 7207 2.866523 ATCCTACGACCCAGGCCGAA 62.867 60.000 0.00 0.00 32.82 4.30
2707 7223 0.179073 CTGCCAATCCTACGACCCAG 60.179 60.000 0.00 0.00 0.00 4.45
2839 7388 5.856156 TCACAAACGTGAAACTAGGGAATA 58.144 37.500 0.00 0.00 40.45 1.75
3118 9071 1.539560 ATGGATCTGAGATCGGCCGG 61.540 60.000 27.83 8.07 0.00 6.13
3125 9078 3.518705 GGCATAGTGGATGGATCTGAGAT 59.481 47.826 0.00 0.00 35.91 2.75
3126 9079 2.902486 GGCATAGTGGATGGATCTGAGA 59.098 50.000 0.00 0.00 35.91 3.27
3137 9090 1.207488 AGGTTGCCTGGCATAGTGGA 61.207 55.000 24.03 2.76 38.76 4.02
3215 9168 2.203788 TGGAAGAGGAGCACCGGT 60.204 61.111 0.00 0.00 41.83 5.28
3254 9207 4.308458 TCCCGTGGAAGTGGCGTG 62.308 66.667 0.00 0.00 0.00 5.34
3255 9208 4.003788 CTCCCGTGGAAGTGGCGT 62.004 66.667 0.00 0.00 0.00 5.68
3256 9209 4.760047 CCTCCCGTGGAAGTGGCG 62.760 72.222 0.00 0.00 0.00 5.69
3258 9211 4.410400 GGCCTCCCGTGGAAGTGG 62.410 72.222 0.00 0.00 0.00 4.00
3275 9228 0.098905 TCTTCTGCGTCTCCGATTCG 59.901 55.000 0.00 0.00 35.63 3.34
3276 9229 1.551145 GTCTTCTGCGTCTCCGATTC 58.449 55.000 0.00 0.00 35.63 2.52
3277 9230 0.179161 CGTCTTCTGCGTCTCCGATT 60.179 55.000 0.00 0.00 35.63 3.34
3278 9231 1.306642 ACGTCTTCTGCGTCTCCGAT 61.307 55.000 0.00 0.00 38.23 4.18
3279 9232 1.964891 ACGTCTTCTGCGTCTCCGA 60.965 57.895 0.00 0.00 38.23 4.55
3280 9233 1.797933 CACGTCTTCTGCGTCTCCG 60.798 63.158 0.00 0.00 40.90 4.63
3281 9234 1.444553 CCACGTCTTCTGCGTCTCC 60.445 63.158 0.00 0.00 40.90 3.71
3282 9235 1.444553 CCCACGTCTTCTGCGTCTC 60.445 63.158 0.00 0.00 40.90 3.36
3283 9236 2.201022 ACCCACGTCTTCTGCGTCT 61.201 57.895 0.00 0.00 40.90 4.18
3284 9237 2.022129 CACCCACGTCTTCTGCGTC 61.022 63.158 0.00 0.00 40.90 5.19
3285 9238 2.029073 CACCCACGTCTTCTGCGT 59.971 61.111 0.00 0.00 43.90 5.24
3286 9239 2.022129 GTCACCCACGTCTTCTGCG 61.022 63.158 0.00 0.00 0.00 5.18
3287 9240 2.022129 CGTCACCCACGTCTTCTGC 61.022 63.158 0.00 0.00 44.07 4.26
3288 9241 4.245054 CGTCACCCACGTCTTCTG 57.755 61.111 0.00 0.00 44.07 3.02
3296 9249 1.677637 GATCCTCCTCCGTCACCCAC 61.678 65.000 0.00 0.00 0.00 4.61
3297 9250 1.381327 GATCCTCCTCCGTCACCCA 60.381 63.158 0.00 0.00 0.00 4.51
3298 9251 1.381327 TGATCCTCCTCCGTCACCC 60.381 63.158 0.00 0.00 0.00 4.61
3299 9252 1.395826 CCTGATCCTCCTCCGTCACC 61.396 65.000 0.00 0.00 0.00 4.02
3300 9253 0.684805 ACCTGATCCTCCTCCGTCAC 60.685 60.000 0.00 0.00 0.00 3.67
3301 9254 0.684479 CACCTGATCCTCCTCCGTCA 60.684 60.000 0.00 0.00 0.00 4.35
3302 9255 0.395862 TCACCTGATCCTCCTCCGTC 60.396 60.000 0.00 0.00 0.00 4.79
3303 9256 0.684805 GTCACCTGATCCTCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
3304 9257 1.395826 GGTCACCTGATCCTCCTCCG 61.396 65.000 0.00 0.00 0.00 4.63
3305 9258 0.031616 AGGTCACCTGATCCTCCTCC 60.032 60.000 0.00 0.00 29.57 4.30
3306 9259 1.408969 GAGGTCACCTGATCCTCCTC 58.591 60.000 0.00 0.00 41.09 3.71
3307 9260 0.396417 CGAGGTCACCTGATCCTCCT 60.396 60.000 0.00 1.65 43.20 3.69
3308 9261 0.395862 TCGAGGTCACCTGATCCTCC 60.396 60.000 0.00 0.00 43.20 4.30
3309 9262 0.741915 GTCGAGGTCACCTGATCCTC 59.258 60.000 0.00 11.19 42.83 3.71
3310 9263 0.039764 TGTCGAGGTCACCTGATCCT 59.960 55.000 0.00 0.00 31.76 3.24
3311 9264 0.173708 GTGTCGAGGTCACCTGATCC 59.826 60.000 0.00 0.00 31.76 3.36
3312 9265 3.723554 GTGTCGAGGTCACCTGATC 57.276 57.895 0.00 0.00 31.76 2.92
3318 9271 3.916392 CTGCGGGTGTCGAGGTCAC 62.916 68.421 0.00 0.00 42.43 3.67
3319 9272 3.680786 CTGCGGGTGTCGAGGTCA 61.681 66.667 0.00 0.00 42.43 4.02
3320 9273 4.436998 CCTGCGGGTGTCGAGGTC 62.437 72.222 2.29 0.00 42.43 3.85
3335 9288 4.760220 ATCCCGCCCTCCAACCCT 62.760 66.667 0.00 0.00 0.00 4.34
3336 9289 4.506255 CATCCCGCCCTCCAACCC 62.506 72.222 0.00 0.00 0.00 4.11
3337 9290 2.893682 CTTCATCCCGCCCTCCAACC 62.894 65.000 0.00 0.00 0.00 3.77
3338 9291 1.452108 CTTCATCCCGCCCTCCAAC 60.452 63.158 0.00 0.00 0.00 3.77
3339 9292 1.923395 ACTTCATCCCGCCCTCCAA 60.923 57.895 0.00 0.00 0.00 3.53
3340 9293 2.285368 ACTTCATCCCGCCCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
3341 9294 2.190578 CACTTCATCCCGCCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
3342 9295 2.190578 CCACTTCATCCCGCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
3343 9296 2.610859 ACCACTTCATCCCGCCCT 60.611 61.111 0.00 0.00 0.00 5.19
3344 9297 2.124695 GACCACTTCATCCCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
3345 9298 2.511600 CGACCACTTCATCCCGCC 60.512 66.667 0.00 0.00 0.00 6.13
3346 9299 1.079405 TTCGACCACTTCATCCCGC 60.079 57.895 0.00 0.00 0.00 6.13
3347 9300 0.460284 CCTTCGACCACTTCATCCCG 60.460 60.000 0.00 0.00 0.00 5.14
3348 9301 0.902531 TCCTTCGACCACTTCATCCC 59.097 55.000 0.00 0.00 0.00 3.85
3349 9302 1.550976 ACTCCTTCGACCACTTCATCC 59.449 52.381 0.00 0.00 0.00 3.51
3350 9303 3.181485 CCTACTCCTTCGACCACTTCATC 60.181 52.174 0.00 0.00 0.00 2.92
3351 9304 2.761208 CCTACTCCTTCGACCACTTCAT 59.239 50.000 0.00 0.00 0.00 2.57
3352 9305 2.168496 CCTACTCCTTCGACCACTTCA 58.832 52.381 0.00 0.00 0.00 3.02
3353 9306 1.135053 GCCTACTCCTTCGACCACTTC 60.135 57.143 0.00 0.00 0.00 3.01
3354 9307 0.896226 GCCTACTCCTTCGACCACTT 59.104 55.000 0.00 0.00 0.00 3.16
3355 9308 0.251653 TGCCTACTCCTTCGACCACT 60.252 55.000 0.00 0.00 0.00 4.00
3356 9309 0.824759 ATGCCTACTCCTTCGACCAC 59.175 55.000 0.00 0.00 0.00 4.16
3357 9310 0.824109 CATGCCTACTCCTTCGACCA 59.176 55.000 0.00 0.00 0.00 4.02
3358 9311 0.530870 GCATGCCTACTCCTTCGACC 60.531 60.000 6.36 0.00 0.00 4.79
3359 9312 0.461961 AGCATGCCTACTCCTTCGAC 59.538 55.000 15.66 0.00 0.00 4.20
3360 9313 1.134699 CAAGCATGCCTACTCCTTCGA 60.135 52.381 15.66 0.00 0.00 3.71
3361 9314 1.134699 TCAAGCATGCCTACTCCTTCG 60.135 52.381 15.66 0.00 0.00 3.79
3362 9315 2.698855 TCAAGCATGCCTACTCCTTC 57.301 50.000 15.66 0.00 0.00 3.46
3363 9316 2.507058 TCATCAAGCATGCCTACTCCTT 59.493 45.455 15.66 0.00 31.70 3.36
3364 9317 2.104451 CTCATCAAGCATGCCTACTCCT 59.896 50.000 15.66 0.00 31.70 3.69
3365 9318 2.492012 CTCATCAAGCATGCCTACTCC 58.508 52.381 15.66 0.00 31.70 3.85
3366 9319 2.158842 ACCTCATCAAGCATGCCTACTC 60.159 50.000 15.66 0.00 31.70 2.59
3367 9320 1.842562 ACCTCATCAAGCATGCCTACT 59.157 47.619 15.66 0.00 31.70 2.57
3368 9321 2.216898 GACCTCATCAAGCATGCCTAC 58.783 52.381 15.66 0.00 31.70 3.18
3369 9322 1.202568 CGACCTCATCAAGCATGCCTA 60.203 52.381 15.66 0.00 31.70 3.93
3370 9323 0.463295 CGACCTCATCAAGCATGCCT 60.463 55.000 15.66 0.00 31.70 4.75
3371 9324 1.442526 CCGACCTCATCAAGCATGCC 61.443 60.000 15.66 0.00 31.70 4.40
3372 9325 0.462581 TCCGACCTCATCAAGCATGC 60.463 55.000 10.51 10.51 31.70 4.06
3373 9326 1.134580 AGTCCGACCTCATCAAGCATG 60.135 52.381 0.00 0.00 0.00 4.06
3374 9327 1.134580 CAGTCCGACCTCATCAAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
3375 9328 0.247460 CAGTCCGACCTCATCAAGCA 59.753 55.000 0.00 0.00 0.00 3.91
3376 9329 0.460987 CCAGTCCGACCTCATCAAGC 60.461 60.000 0.00 0.00 0.00 4.01
3377 9330 1.135915 CTCCAGTCCGACCTCATCAAG 59.864 57.143 0.00 0.00 0.00 3.02
3378 9331 1.186200 CTCCAGTCCGACCTCATCAA 58.814 55.000 0.00 0.00 0.00 2.57
3379 9332 1.323271 GCTCCAGTCCGACCTCATCA 61.323 60.000 0.00 0.00 0.00 3.07
3380 9333 1.040339 AGCTCCAGTCCGACCTCATC 61.040 60.000 0.00 0.00 0.00 2.92
3381 9334 1.000993 AGCTCCAGTCCGACCTCAT 59.999 57.895 0.00 0.00 0.00 2.90
3382 9335 1.979155 CAGCTCCAGTCCGACCTCA 60.979 63.158 0.00 0.00 0.00 3.86
3383 9336 2.716017 CCAGCTCCAGTCCGACCTC 61.716 68.421 0.00 0.00 0.00 3.85
3384 9337 2.681778 CCAGCTCCAGTCCGACCT 60.682 66.667 0.00 0.00 0.00 3.85
3385 9338 2.997897 ACCAGCTCCAGTCCGACC 60.998 66.667 0.00 0.00 0.00 4.79
3386 9339 2.262915 CACCAGCTCCAGTCCGAC 59.737 66.667 0.00 0.00 0.00 4.79
3387 9340 2.997315 CCACCAGCTCCAGTCCGA 60.997 66.667 0.00 0.00 0.00 4.55
3388 9341 2.997315 TCCACCAGCTCCAGTCCG 60.997 66.667 0.00 0.00 0.00 4.79
3389 9342 2.664081 CCTCCACCAGCTCCAGTCC 61.664 68.421 0.00 0.00 0.00 3.85
3390 9343 1.484444 AACCTCCACCAGCTCCAGTC 61.484 60.000 0.00 0.00 0.00 3.51
3391 9344 0.178903 TAACCTCCACCAGCTCCAGT 60.179 55.000 0.00 0.00 0.00 4.00
3392 9345 1.134280 CATAACCTCCACCAGCTCCAG 60.134 57.143 0.00 0.00 0.00 3.86
3393 9346 0.911769 CATAACCTCCACCAGCTCCA 59.088 55.000 0.00 0.00 0.00 3.86
3394 9347 0.181350 CCATAACCTCCACCAGCTCC 59.819 60.000 0.00 0.00 0.00 4.70
3395 9348 0.181350 CCCATAACCTCCACCAGCTC 59.819 60.000 0.00 0.00 0.00 4.09
3396 9349 1.926426 GCCCATAACCTCCACCAGCT 61.926 60.000 0.00 0.00 0.00 4.24
3397 9350 1.453928 GCCCATAACCTCCACCAGC 60.454 63.158 0.00 0.00 0.00 4.85
3398 9351 1.227383 GGCCCATAACCTCCACCAG 59.773 63.158 0.00 0.00 0.00 4.00
3399 9352 0.045008 TAGGCCCATAACCTCCACCA 59.955 55.000 0.00 0.00 38.81 4.17
3400 9353 1.073923 CATAGGCCCATAACCTCCACC 59.926 57.143 0.00 0.00 38.81 4.61
3401 9354 1.774856 ACATAGGCCCATAACCTCCAC 59.225 52.381 0.00 0.00 38.81 4.02
3402 9355 1.774254 CACATAGGCCCATAACCTCCA 59.226 52.381 0.00 0.00 38.81 3.86
3403 9356 1.073923 CCACATAGGCCCATAACCTCC 59.926 57.143 0.00 0.00 38.81 4.30
3404 9357 2.039084 CTCCACATAGGCCCATAACCTC 59.961 54.545 0.00 0.00 38.81 3.85
3405 9358 2.057922 CTCCACATAGGCCCATAACCT 58.942 52.381 0.00 0.00 41.57 3.50
3406 9359 2.039084 CTCTCCACATAGGCCCATAACC 59.961 54.545 0.00 0.00 37.29 2.85
3407 9360 2.039084 CCTCTCCACATAGGCCCATAAC 59.961 54.545 0.00 0.00 37.29 1.89
3408 9361 2.090210 TCCTCTCCACATAGGCCCATAA 60.090 50.000 0.00 0.00 37.29 1.90
3409 9362 1.507742 TCCTCTCCACATAGGCCCATA 59.492 52.381 0.00 0.00 37.29 2.74
3410 9363 0.268869 TCCTCTCCACATAGGCCCAT 59.731 55.000 0.00 0.00 37.29 4.00
3411 9364 0.044092 TTCCTCTCCACATAGGCCCA 59.956 55.000 0.00 0.00 37.29 5.36
3412 9365 0.761802 CTTCCTCTCCACATAGGCCC 59.238 60.000 0.00 0.00 37.29 5.80
3413 9366 1.794714 TCTTCCTCTCCACATAGGCC 58.205 55.000 0.00 0.00 37.29 5.19
3414 9367 2.484594 GCTTCTTCCTCTCCACATAGGC 60.485 54.545 0.00 0.00 37.29 3.93
3415 9368 2.103941 GGCTTCTTCCTCTCCACATAGG 59.896 54.545 0.00 0.00 39.47 2.57
3416 9369 2.223923 CGGCTTCTTCCTCTCCACATAG 60.224 54.545 0.00 0.00 0.00 2.23
3417 9370 1.757118 CGGCTTCTTCCTCTCCACATA 59.243 52.381 0.00 0.00 0.00 2.29
3418 9371 0.539051 CGGCTTCTTCCTCTCCACAT 59.461 55.000 0.00 0.00 0.00 3.21
3419 9372 0.541998 TCGGCTTCTTCCTCTCCACA 60.542 55.000 0.00 0.00 0.00 4.17
3420 9373 0.608640 TTCGGCTTCTTCCTCTCCAC 59.391 55.000 0.00 0.00 0.00 4.02
3421 9374 1.482593 GATTCGGCTTCTTCCTCTCCA 59.517 52.381 0.00 0.00 0.00 3.86
3422 9375 1.537135 CGATTCGGCTTCTTCCTCTCC 60.537 57.143 0.00 0.00 0.00 3.71
3423 9376 1.537135 CCGATTCGGCTTCTTCCTCTC 60.537 57.143 12.95 0.00 41.17 3.20
3424 9377 0.461961 CCGATTCGGCTTCTTCCTCT 59.538 55.000 12.95 0.00 41.17 3.69
3425 9378 2.979130 CCGATTCGGCTTCTTCCTC 58.021 57.895 12.95 0.00 41.17 3.71
3436 9389 0.029567 CCTCGACCTCTTCCGATTCG 59.970 60.000 0.00 0.00 34.08 3.34
3437 9390 1.065851 GACCTCGACCTCTTCCGATTC 59.934 57.143 0.00 0.00 34.08 2.52
3438 9391 1.104630 GACCTCGACCTCTTCCGATT 58.895 55.000 0.00 0.00 34.08 3.34
3439 9392 1.096386 CGACCTCGACCTCTTCCGAT 61.096 60.000 0.00 0.00 43.02 4.18
3440 9393 1.744368 CGACCTCGACCTCTTCCGA 60.744 63.158 0.00 0.00 43.02 4.55
3441 9394 2.762234 CCGACCTCGACCTCTTCCG 61.762 68.421 0.00 0.00 43.02 4.30
3442 9395 2.416432 CCCGACCTCGACCTCTTCC 61.416 68.421 0.00 0.00 43.02 3.46
3443 9396 3.066233 GCCCGACCTCGACCTCTTC 62.066 68.421 0.00 0.00 43.02 2.87
3444 9397 3.069318 GCCCGACCTCGACCTCTT 61.069 66.667 0.00 0.00 43.02 2.85
3462 9415 4.511454 TGTGATAAAATGTATCGCCTGAGC 59.489 41.667 1.89 0.00 34.51 4.26
3463 9416 6.791887 ATGTGATAAAATGTATCGCCTGAG 57.208 37.500 1.89 0.00 34.51 3.35
3464 9417 7.566760 AAATGTGATAAAATGTATCGCCTGA 57.433 32.000 1.89 0.00 34.51 3.86
3465 9418 8.633075 AAAAATGTGATAAAATGTATCGCCTG 57.367 30.769 1.89 0.00 34.51 4.85
3489 9442 3.465871 AGCCGTACCGTGTTTCTAAAAA 58.534 40.909 0.00 0.00 0.00 1.94
3490 9443 3.110447 AGCCGTACCGTGTTTCTAAAA 57.890 42.857 0.00 0.00 0.00 1.52
3491 9444 2.801679 CAAGCCGTACCGTGTTTCTAAA 59.198 45.455 0.00 0.00 0.00 1.85
3492 9445 2.224018 ACAAGCCGTACCGTGTTTCTAA 60.224 45.455 0.00 0.00 0.00 2.10
3493 9446 1.340889 ACAAGCCGTACCGTGTTTCTA 59.659 47.619 0.00 0.00 0.00 2.10
3494 9447 0.105408 ACAAGCCGTACCGTGTTTCT 59.895 50.000 0.00 0.00 0.00 2.52
3495 9448 0.233848 CACAAGCCGTACCGTGTTTC 59.766 55.000 0.00 0.00 0.00 2.78
3496 9449 2.313267 CACAAGCCGTACCGTGTTT 58.687 52.632 0.00 0.00 0.00 2.83
3497 9450 4.036977 CACAAGCCGTACCGTGTT 57.963 55.556 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.