Multiple sequence alignment - TraesCS6B01G421600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G421600 chr6B 100.000 3550 0 0 1 3550 692258122 692261671 0.000000e+00 6556.0
1 TraesCS6B01G421600 chr6B 83.015 1990 228 55 551 2495 692427811 692429735 0.000000e+00 1701.0
2 TraesCS6B01G421600 chr6B 84.274 1488 153 38 1114 2578 692338646 692340075 0.000000e+00 1376.0
3 TraesCS6B01G421600 chr6B 92.691 862 46 6 2528 3386 692274778 692275625 0.000000e+00 1227.0
4 TraesCS6B01G421600 chr6B 84.674 1044 113 26 1545 2575 692234389 692235398 0.000000e+00 998.0
5 TraesCS6B01G421600 chr6B 80.000 585 76 24 662 1212 692233329 692233906 9.240000e-106 394.0
6 TraesCS6B01G421600 chr6B 85.154 357 32 11 706 1058 692337863 692338202 2.620000e-91 346.0
7 TraesCS6B01G421600 chr6B 85.232 237 27 2 1255 1491 692234060 692234288 1.650000e-58 237.0
8 TraesCS6B01G421600 chr6B 83.333 198 5 5 3354 3550 692275627 692275797 1.320000e-34 158.0
9 TraesCS6B01G421600 chr6D 91.298 2195 130 27 407 2578 455133524 455135680 0.000000e+00 2939.0
10 TraesCS6B01G421600 chr6D 82.989 2081 226 68 551 2574 455250611 455252620 0.000000e+00 1764.0
11 TraesCS6B01G421600 chr6D 84.470 1056 128 24 1545 2575 455099217 455100261 0.000000e+00 1009.0
12 TraesCS6B01G421600 chr6D 80.858 862 105 30 664 1491 455098281 455099116 1.080000e-174 623.0
13 TraesCS6B01G421600 chr6D 95.166 331 13 2 75 405 455133029 455133356 1.460000e-143 520.0
14 TraesCS6B01G421600 chr6D 79.876 323 47 9 2247 2563 455295245 455295555 1.660000e-53 220.0
15 TraesCS6B01G421600 chr6A 88.868 1572 128 24 898 2449 601872359 601873903 0.000000e+00 1890.0
16 TraesCS6B01G421600 chr6A 84.316 1900 189 54 706 2552 601472003 601473846 0.000000e+00 1757.0
17 TraesCS6B01G421600 chr6A 82.600 2069 231 67 551 2574 601949659 601951643 0.000000e+00 1707.0
18 TraesCS6B01G421600 chr6A 88.441 372 35 3 551 918 601871962 601872329 3.250000e-120 442.0
19 TraesCS6B01G421600 chr3D 86.522 230 24 6 177 403 54718588 54718813 2.740000e-61 246.0
20 TraesCS6B01G421600 chr3B 75.410 305 56 12 2620 2914 703921783 703922078 2.880000e-26 130.0
21 TraesCS6B01G421600 chr3B 80.734 109 16 5 3177 3282 584979491 584979597 2.940000e-11 80.5
22 TraesCS6B01G421600 chr4B 92.063 63 5 0 196 258 37526391 37526329 4.880000e-14 89.8
23 TraesCS6B01G421600 chr1A 77.869 122 22 5 2793 2910 507159866 507159986 1.770000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G421600 chr6B 692258122 692261671 3549 False 6556.0 6556 100.0000 1 3550 1 chr6B.!!$F1 3549
1 TraesCS6B01G421600 chr6B 692427811 692429735 1924 False 1701.0 1701 83.0150 551 2495 1 chr6B.!!$F2 1944
2 TraesCS6B01G421600 chr6B 692337863 692340075 2212 False 861.0 1376 84.7140 706 2578 2 chr6B.!!$F5 1872
3 TraesCS6B01G421600 chr6B 692274778 692275797 1019 False 692.5 1227 88.0120 2528 3550 2 chr6B.!!$F4 1022
4 TraesCS6B01G421600 chr6B 692233329 692235398 2069 False 543.0 998 83.3020 662 2575 3 chr6B.!!$F3 1913
5 TraesCS6B01G421600 chr6D 455250611 455252620 2009 False 1764.0 1764 82.9890 551 2574 1 chr6D.!!$F1 2023
6 TraesCS6B01G421600 chr6D 455133029 455135680 2651 False 1729.5 2939 93.2320 75 2578 2 chr6D.!!$F4 2503
7 TraesCS6B01G421600 chr6D 455098281 455100261 1980 False 816.0 1009 82.6640 664 2575 2 chr6D.!!$F3 1911
8 TraesCS6B01G421600 chr6A 601472003 601473846 1843 False 1757.0 1757 84.3160 706 2552 1 chr6A.!!$F1 1846
9 TraesCS6B01G421600 chr6A 601949659 601951643 1984 False 1707.0 1707 82.6000 551 2574 1 chr6A.!!$F2 2023
10 TraesCS6B01G421600 chr6A 601871962 601873903 1941 False 1166.0 1890 88.6545 551 2449 2 chr6A.!!$F3 1898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.107831 TGGCGGCTATTACCACATCC 59.892 55.0 11.43 0.0 0.0 3.51 F
200 201 0.475048 TCCTTTTCGTCCCCCTTCCT 60.475 55.0 0.00 0.0 0.0 3.36 F
218 219 0.528684 CTAGGCGAAGAGGAAAGGCG 60.529 60.0 0.00 0.0 0.0 5.52 F
1840 2746 0.793617 TCCTCCTCCTCACCCTCTTT 59.206 55.0 0.00 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1005 1286 0.178918 GGTGCTCTAGGGATAGGCCT 60.179 60.000 11.78 11.78 36.66 5.19 R
1413 2240 0.240945 GCACGGCACAAAGTTAGCAT 59.759 50.000 0.00 0.00 0.00 3.79 R
1900 2806 2.029964 GGGGCGACGAAGACACAA 59.970 61.111 0.00 0.00 0.00 3.33 R
3464 4455 0.029567 GGGAGTAGTGATCACGAGCG 59.970 60.000 19.85 0.00 36.20 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.206867 TCCTATCAGTAGAAATGTCTCATTTGG 58.793 37.037 11.60 4.86 35.12 3.28
27 28 7.989741 CCTATCAGTAGAAATGTCTCATTTGGT 59.010 37.037 11.60 3.20 35.12 3.67
28 29 9.388506 CTATCAGTAGAAATGTCTCATTTGGTT 57.611 33.333 11.60 2.11 35.12 3.67
29 30 7.672983 TCAGTAGAAATGTCTCATTTGGTTC 57.327 36.000 11.60 0.00 35.12 3.62
30 31 6.368791 TCAGTAGAAATGTCTCATTTGGTTCG 59.631 38.462 11.60 0.37 35.12 3.95
31 32 4.425577 AGAAATGTCTCATTTGGTTCGC 57.574 40.909 11.60 0.00 0.00 4.70
32 33 3.820467 AGAAATGTCTCATTTGGTTCGCA 59.180 39.130 11.60 0.00 0.00 5.10
33 34 3.559238 AATGTCTCATTTGGTTCGCAC 57.441 42.857 0.00 0.00 0.00 5.34
34 35 2.254546 TGTCTCATTTGGTTCGCACT 57.745 45.000 0.00 0.00 0.00 4.40
35 36 2.571212 TGTCTCATTTGGTTCGCACTT 58.429 42.857 0.00 0.00 0.00 3.16
36 37 2.290367 TGTCTCATTTGGTTCGCACTTG 59.710 45.455 0.00 0.00 0.00 3.16
37 38 2.290641 GTCTCATTTGGTTCGCACTTGT 59.709 45.455 0.00 0.00 0.00 3.16
38 39 3.496884 GTCTCATTTGGTTCGCACTTGTA 59.503 43.478 0.00 0.00 0.00 2.41
39 40 4.154195 GTCTCATTTGGTTCGCACTTGTAT 59.846 41.667 0.00 0.00 0.00 2.29
40 41 4.154015 TCTCATTTGGTTCGCACTTGTATG 59.846 41.667 0.00 0.00 0.00 2.39
41 42 3.190327 TCATTTGGTTCGCACTTGTATGG 59.810 43.478 0.00 0.00 0.00 2.74
42 43 0.878416 TTGGTTCGCACTTGTATGGC 59.122 50.000 0.00 0.00 0.00 4.40
46 47 2.819595 CGCACTTGTATGGCGGCT 60.820 61.111 11.43 0.00 46.46 5.52
47 48 1.520564 CGCACTTGTATGGCGGCTA 60.521 57.895 11.43 0.00 46.46 3.93
48 49 0.880278 CGCACTTGTATGGCGGCTAT 60.880 55.000 11.43 3.79 46.46 2.97
49 50 1.308998 GCACTTGTATGGCGGCTATT 58.691 50.000 11.43 0.00 0.00 1.73
50 51 2.489971 GCACTTGTATGGCGGCTATTA 58.510 47.619 11.43 0.00 0.00 0.98
51 52 2.223377 GCACTTGTATGGCGGCTATTAC 59.777 50.000 11.43 10.10 0.00 1.89
52 53 2.806244 CACTTGTATGGCGGCTATTACC 59.194 50.000 11.43 0.00 0.00 2.85
53 54 2.436542 ACTTGTATGGCGGCTATTACCA 59.563 45.455 11.43 0.00 37.99 3.25
54 55 2.536761 TGTATGGCGGCTATTACCAC 57.463 50.000 11.43 0.00 35.99 4.16
55 56 1.763545 TGTATGGCGGCTATTACCACA 59.236 47.619 11.43 0.00 35.99 4.17
56 57 2.370519 TGTATGGCGGCTATTACCACAT 59.629 45.455 11.43 0.00 35.99 3.21
57 58 2.185004 ATGGCGGCTATTACCACATC 57.815 50.000 11.43 0.00 35.99 3.06
58 59 0.107831 TGGCGGCTATTACCACATCC 59.892 55.000 11.43 0.00 0.00 3.51
59 60 0.605589 GGCGGCTATTACCACATCCC 60.606 60.000 0.00 0.00 0.00 3.85
60 61 0.107831 GCGGCTATTACCACATCCCA 59.892 55.000 0.00 0.00 0.00 4.37
61 62 1.476110 GCGGCTATTACCACATCCCAA 60.476 52.381 0.00 0.00 0.00 4.12
62 63 2.925724 CGGCTATTACCACATCCCAAA 58.074 47.619 0.00 0.00 0.00 3.28
63 64 3.283751 CGGCTATTACCACATCCCAAAA 58.716 45.455 0.00 0.00 0.00 2.44
64 65 3.697045 CGGCTATTACCACATCCCAAAAA 59.303 43.478 0.00 0.00 0.00 1.94
65 66 4.439563 CGGCTATTACCACATCCCAAAAAC 60.440 45.833 0.00 0.00 0.00 2.43
66 67 4.709886 GGCTATTACCACATCCCAAAAACT 59.290 41.667 0.00 0.00 0.00 2.66
67 68 5.186992 GGCTATTACCACATCCCAAAAACTT 59.813 40.000 0.00 0.00 0.00 2.66
68 69 6.378848 GGCTATTACCACATCCCAAAAACTTA 59.621 38.462 0.00 0.00 0.00 2.24
69 70 7.416326 GGCTATTACCACATCCCAAAAACTTAG 60.416 40.741 0.00 0.00 0.00 2.18
70 71 6.850752 ATTACCACATCCCAAAAACTTAGG 57.149 37.500 0.00 0.00 0.00 2.69
71 72 2.897326 ACCACATCCCAAAAACTTAGGC 59.103 45.455 0.00 0.00 0.00 3.93
72 73 3.165071 CCACATCCCAAAAACTTAGGCT 58.835 45.455 0.00 0.00 0.00 4.58
73 74 3.056607 CCACATCCCAAAAACTTAGGCTG 60.057 47.826 0.00 0.00 0.00 4.85
91 92 2.943199 GCTGGGAAGACTGGAAGAATGG 60.943 54.545 0.00 0.00 37.43 3.16
152 153 9.883142 GATATTGTAACCCATCCATTTCAAAAA 57.117 29.630 0.00 0.00 0.00 1.94
189 190 1.226746 AACAGAGCGGTTCCTTTTCG 58.773 50.000 0.00 0.00 0.00 3.46
191 192 0.790814 CAGAGCGGTTCCTTTTCGTC 59.209 55.000 0.00 0.00 0.00 4.20
200 201 0.475048 TCCTTTTCGTCCCCCTTCCT 60.475 55.000 0.00 0.00 0.00 3.36
202 203 1.209747 CCTTTTCGTCCCCCTTCCTAG 59.790 57.143 0.00 0.00 0.00 3.02
218 219 0.528684 CTAGGCGAAGAGGAAAGGCG 60.529 60.000 0.00 0.00 0.00 5.52
232 233 4.554036 GGCGACCAGATCCCAGCC 62.554 72.222 0.00 0.00 37.61 4.85
283 284 2.492090 CTCCTTCAGTCGCTCCGG 59.508 66.667 0.00 0.00 0.00 5.14
284 285 3.708220 CTCCTTCAGTCGCTCCGGC 62.708 68.421 0.00 0.00 0.00 6.13
315 316 1.004891 GGACCCCAATCCTCTCCCT 59.995 63.158 0.00 0.00 35.68 4.20
363 364 2.526873 AGGTGGCTTCGTCCAGGT 60.527 61.111 0.00 0.00 36.67 4.00
364 365 2.358737 GGTGGCTTCGTCCAGGTG 60.359 66.667 0.00 0.00 36.67 4.00
405 406 6.481644 AGCGTCAGATAAATCTTCCTCAATTC 59.518 38.462 0.00 0.00 34.22 2.17
418 585 0.909610 TCAATTCCGCCTCCTCCAGT 60.910 55.000 0.00 0.00 0.00 4.00
425 592 2.581354 CCTCCTCCAGTGCCTTCG 59.419 66.667 0.00 0.00 0.00 3.79
464 631 4.680237 TGGAGCTTGGTGGTCGCG 62.680 66.667 0.00 0.00 43.60 5.87
491 658 1.927895 GTCTTCGTGGCGATCTCAAT 58.072 50.000 0.00 0.00 35.23 2.57
531 698 6.183361 TGGCCTCATTTGTTTTTAAGGAACAT 60.183 34.615 3.32 0.00 36.92 2.71
534 701 6.705381 CCTCATTTGTTTTTAAGGAACATGCA 59.295 34.615 7.15 0.00 36.92 3.96
540 707 9.606631 TTTGTTTTTAAGGAACATGCAGTAAAT 57.393 25.926 7.15 0.00 36.92 1.40
657 829 8.868522 ATTTCCATCACTATCTCTTTCAAACA 57.131 30.769 0.00 0.00 0.00 2.83
658 830 8.868522 TTTCCATCACTATCTCTTTCAAACAT 57.131 30.769 0.00 0.00 0.00 2.71
659 831 9.958180 TTTCCATCACTATCTCTTTCAAACATA 57.042 29.630 0.00 0.00 0.00 2.29
693 865 9.788960 CATCAGATAAGATCAATTATGCATTGG 57.211 33.333 3.54 0.00 42.52 3.16
789 973 0.947244 GTAATGCCATCTTCCTGCCG 59.053 55.000 0.00 0.00 0.00 5.69
800 984 4.623932 TCTTCCTGCCGATATAAAGCAT 57.376 40.909 0.00 0.00 35.64 3.79
1005 1286 8.966868 TCTATATATCTTTGTATCACGATGGCA 58.033 33.333 0.00 0.00 0.00 4.92
1065 1348 6.159222 TCGGCCTCCTAGGTATATACTATTCA 59.841 42.308 9.08 0.00 37.80 2.57
1066 1349 6.487331 CGGCCTCCTAGGTATATACTATTCAG 59.513 46.154 9.08 4.32 37.80 3.02
1375 2202 7.425595 GCGTATAAAAGAAAGATGTAAGTGTGC 59.574 37.037 0.00 0.00 0.00 4.57
1378 2205 3.788227 AGAAAGATGTAAGTGTGCCCA 57.212 42.857 0.00 0.00 0.00 5.36
1407 2234 5.786401 ATCACAACTCATCGCTAACTTTC 57.214 39.130 0.00 0.00 0.00 2.62
1412 2239 4.388378 ACTCATCGCTAACTTTCCTACC 57.612 45.455 0.00 0.00 0.00 3.18
1413 2240 3.767673 ACTCATCGCTAACTTTCCTACCA 59.232 43.478 0.00 0.00 0.00 3.25
1499 2333 4.923871 GCGACAGTCTCTGTTTTCTTCATA 59.076 41.667 3.91 0.00 45.44 2.15
1534 2434 9.091784 CATATCAATATGTCCTCCGATAACTTG 57.908 37.037 2.43 0.00 36.31 3.16
1672 2578 1.213013 CTACGCGCTGGTGAAGACT 59.787 57.895 5.73 0.00 0.00 3.24
1758 2664 3.834799 CCTCGTCTACGCCCCCAC 61.835 72.222 0.00 0.00 39.60 4.61
1808 2714 0.824109 CCTCCTACTCAACATCGCCA 59.176 55.000 0.00 0.00 0.00 5.69
1840 2746 0.793617 TCCTCCTCCTCACCCTCTTT 59.206 55.000 0.00 0.00 0.00 2.52
1918 2824 2.035237 TTTGTGTCTTCGTCGCCCCT 62.035 55.000 0.00 0.00 0.00 4.79
1936 2842 1.408340 CCTCTCAGCATCATCGTGAGT 59.592 52.381 0.00 0.00 39.06 3.41
1938 2844 2.094675 TCTCAGCATCATCGTGAGTCA 58.905 47.619 0.00 0.00 39.06 3.41
1944 2850 2.796032 GCATCATCGTGAGTCATCGACA 60.796 50.000 16.42 9.30 38.85 4.35
1981 2895 1.391577 ATATTGTTGCTCATGGCGCA 58.608 45.000 10.83 6.52 45.43 6.09
2006 2927 7.237920 ACCTTTTGTACGTGTTAACTAACTG 57.762 36.000 7.22 0.00 37.12 3.16
2014 2935 6.998258 ACGTGTTAACTAACTGTATGTGTC 57.002 37.500 7.22 0.00 37.12 3.67
2015 2936 6.506147 ACGTGTTAACTAACTGTATGTGTCA 58.494 36.000 7.22 0.00 37.12 3.58
2125 3049 0.627451 TCTGGTTCCTCTACGGCCTA 59.373 55.000 0.00 0.00 0.00 3.93
2143 3067 5.059833 GGCCTACTCATCAAGGACAAATAG 58.940 45.833 0.00 0.00 40.98 1.73
2185 3113 9.039165 ACATCATCCAATCCTTCTGTTAATTTT 57.961 29.630 0.00 0.00 0.00 1.82
2203 3131 6.481954 AATTTTCCGATAGATACGCATTCC 57.518 37.500 0.00 0.00 39.76 3.01
2216 3158 2.756760 ACGCATTCCATTCTCAAGCATT 59.243 40.909 0.00 0.00 0.00 3.56
2217 3159 3.194116 ACGCATTCCATTCTCAAGCATTT 59.806 39.130 0.00 0.00 0.00 2.32
2245 3187 6.476380 ACTGACGAGTGACAATTAACGTTTTA 59.524 34.615 5.91 0.00 34.26 1.52
2300 3242 0.776176 GGATGATCCAGATGGCCCTT 59.224 55.000 6.60 0.00 36.28 3.95
2329 3271 4.147322 CATGAACGCGACACCGGC 62.147 66.667 15.93 0.00 36.06 6.13
2330 3272 4.673298 ATGAACGCGACACCGGCA 62.673 61.111 15.93 0.00 36.06 5.69
2368 3313 3.267031 GAGGGGAAAGAGGGATTGAAGAA 59.733 47.826 0.00 0.00 0.00 2.52
2372 3317 3.562176 GGAAAGAGGGATTGAAGAAGCCA 60.562 47.826 0.00 0.00 39.63 4.75
2387 3332 4.379243 CCAGCGGAGGAGCACGTT 62.379 66.667 0.00 0.00 40.15 3.99
2423 3368 4.124851 TGGTAAGATCGAAAAGAGCTCC 57.875 45.455 10.93 0.00 46.24 4.70
2463 3408 2.741985 CCGAGATGCACAACGCCA 60.742 61.111 0.00 0.00 41.33 5.69
2471 3422 3.443045 CACAACGCCATCCCCAGC 61.443 66.667 0.00 0.00 0.00 4.85
2524 3475 0.108186 CAAGTGATGGCGCTGGACTA 60.108 55.000 7.64 0.00 34.49 2.59
2636 3590 4.260091 GGCACGATATTTGTTAACGAGACC 60.260 45.833 0.26 0.00 31.22 3.85
2660 3614 3.916349 ACATGGCTATATCCTAGGGCAAA 59.084 43.478 9.46 0.00 37.75 3.68
2664 3618 2.305927 GCTATATCCTAGGGCAAAGGCA 59.694 50.000 9.46 0.00 43.71 4.75
2687 3641 1.446966 GCGCTCCTCTCCAAGACAC 60.447 63.158 0.00 0.00 0.00 3.67
2696 3650 0.474184 CTCCAAGACACCCCAACACT 59.526 55.000 0.00 0.00 0.00 3.55
2701 3655 3.425014 ACACCCCAACACTGGCCA 61.425 61.111 4.71 4.71 41.99 5.36
2703 3657 4.579384 ACCCCAACACTGGCCACG 62.579 66.667 0.00 0.00 41.99 4.94
2754 3708 9.621629 TCCTCCGTGTATTTATTGTATCAATTT 57.378 29.630 0.37 0.00 0.00 1.82
2799 3753 5.429762 TGCCCCCTCCTCATCATTATATAAG 59.570 44.000 1.02 0.00 0.00 1.73
2800 3754 5.667626 GCCCCCTCCTCATCATTATATAAGA 59.332 44.000 1.02 0.08 0.00 2.10
2801 3755 6.183361 GCCCCCTCCTCATCATTATATAAGAG 60.183 46.154 1.02 2.50 0.00 2.85
2803 3757 6.183361 CCCCTCCTCATCATTATATAAGAGGC 60.183 46.154 17.74 0.00 41.79 4.70
2844 3799 2.271800 CTCCAGCACAAACTCGTATCC 58.728 52.381 0.00 0.00 0.00 2.59
2868 3823 4.661222 TCCACATCAATTACAGCTCCAAA 58.339 39.130 0.00 0.00 0.00 3.28
2881 3836 5.513233 ACAGCTCCAAATTCATGTAATCCT 58.487 37.500 0.00 0.00 0.00 3.24
2896 3851 9.066892 TCATGTAATCCTTTGGCTACAATATTC 57.933 33.333 0.00 0.00 36.29 1.75
2897 3852 7.817418 TGTAATCCTTTGGCTACAATATTCC 57.183 36.000 0.00 0.00 36.29 3.01
2902 3857 4.704540 CCTTTGGCTACAATATTCCACACA 59.295 41.667 0.00 0.00 36.29 3.72
2943 3898 6.983906 ACAGGGACATTTTCTGAAATTCTT 57.016 33.333 3.31 0.00 33.25 2.52
2983 3939 5.117355 ACATCTTCTGAAAATGCACACAG 57.883 39.130 3.68 0.00 0.00 3.66
3136 4093 7.541122 AGTTAAAGAAAAGGCATCGAGATAC 57.459 36.000 0.00 0.00 0.00 2.24
3155 4112 7.499232 CGAGATACCAGGGAAAATTCAGTTAAT 59.501 37.037 0.00 0.00 0.00 1.40
3160 4117 7.903145 ACCAGGGAAAATTCAGTTAATAAACC 58.097 34.615 0.00 0.00 36.15 3.27
3193 4150 8.817092 AGGTTCCGAAAATTGGATAAAATAGA 57.183 30.769 0.00 0.00 34.91 1.98
3237 4194 4.323868 CCTTCCAAAAGGTTCCCAAAACAA 60.324 41.667 0.00 0.00 46.10 2.83
3248 4205 5.113383 GTTCCCAAAACAAGTTAAACCAGG 58.887 41.667 0.00 0.00 0.00 4.45
3277 4234 4.935578 CCTCCTAGAAGGTTCCCAAAATT 58.064 43.478 0.00 0.00 36.53 1.82
3314 4271 7.345392 AGAACAATTTAAATGGGCCAGACATAT 59.655 33.333 13.78 0.00 0.00 1.78
3336 4293 1.385528 ACCCTGTTGTTTTGTCGACC 58.614 50.000 14.12 0.00 0.00 4.79
3340 4297 2.538132 CCTGTTGTTTTGTCGACCGTTC 60.538 50.000 14.12 2.14 0.00 3.95
3341 4298 2.074576 TGTTGTTTTGTCGACCGTTCA 58.925 42.857 14.12 4.86 0.00 3.18
3382 4373 4.183101 CGTCTAGTAGGACTCTCGAAACT 58.817 47.826 0.00 0.00 34.38 2.66
3399 4390 1.290134 ACTCCCCCTTTGCTCCTTAG 58.710 55.000 0.00 0.00 0.00 2.18
3427 4418 3.363178 GAAAGAAAAGTTGGCACTCACG 58.637 45.455 0.00 0.00 30.45 4.35
3435 4426 0.324614 TTGGCACTCACGTCCATCAT 59.675 50.000 0.00 0.00 0.00 2.45
3449 4440 4.130118 GTCCATCATAGTGTTCCACATCC 58.870 47.826 0.00 0.00 36.74 3.51
3450 4441 3.136443 TCCATCATAGTGTTCCACATCCC 59.864 47.826 0.00 0.00 36.74 3.85
3451 4442 3.117926 CCATCATAGTGTTCCACATCCCA 60.118 47.826 0.00 0.00 36.74 4.37
3452 4443 4.525996 CATCATAGTGTTCCACATCCCAA 58.474 43.478 0.00 0.00 36.74 4.12
3453 4444 4.220693 TCATAGTGTTCCACATCCCAAG 57.779 45.455 0.00 0.00 36.74 3.61
3454 4445 3.587061 TCATAGTGTTCCACATCCCAAGT 59.413 43.478 0.00 0.00 36.74 3.16
3455 4446 2.276732 AGTGTTCCACATCCCAAGTG 57.723 50.000 0.00 0.00 36.74 3.16
3465 4456 2.579878 TCCCAAGTGGAGTAGCTCG 58.420 57.895 0.00 0.00 38.61 5.03
3466 4457 1.153549 CCCAAGTGGAGTAGCTCGC 60.154 63.158 0.00 0.00 37.39 5.03
3467 4458 1.608717 CCCAAGTGGAGTAGCTCGCT 61.609 60.000 0.00 0.00 37.39 4.93
3468 4459 0.179124 CCAAGTGGAGTAGCTCGCTC 60.179 60.000 9.11 9.11 37.39 5.03
3469 4460 0.524392 CAAGTGGAGTAGCTCGCTCG 60.524 60.000 10.81 0.00 34.00 5.03
3470 4461 0.961358 AAGTGGAGTAGCTCGCTCGT 60.961 55.000 10.81 0.00 34.00 4.18
3471 4462 1.226435 GTGGAGTAGCTCGCTCGTG 60.226 63.158 10.81 0.00 34.00 4.35
3472 4463 1.376812 TGGAGTAGCTCGCTCGTGA 60.377 57.895 10.81 0.00 34.00 4.35
3473 4464 0.748367 TGGAGTAGCTCGCTCGTGAT 60.748 55.000 10.81 0.00 34.00 3.06
3474 4465 0.040781 GGAGTAGCTCGCTCGTGATC 60.041 60.000 10.81 0.00 34.00 2.92
3475 4466 0.658368 GAGTAGCTCGCTCGTGATCA 59.342 55.000 0.00 0.00 0.00 2.92
3476 4467 0.378962 AGTAGCTCGCTCGTGATCAC 59.621 55.000 16.21 16.21 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.206867 CCAAATGAGACATTTCTACTGATAGGA 58.793 37.037 6.73 0.00 29.47 2.94
1 2 7.989741 ACCAAATGAGACATTTCTACTGATAGG 59.010 37.037 6.73 5.29 29.47 2.57
2 3 8.954950 ACCAAATGAGACATTTCTACTGATAG 57.045 34.615 6.73 0.00 29.47 2.08
3 4 9.383519 GAACCAAATGAGACATTTCTACTGATA 57.616 33.333 6.73 0.00 29.47 2.15
4 5 7.065085 CGAACCAAATGAGACATTTCTACTGAT 59.935 37.037 6.73 0.00 29.47 2.90
5 6 6.368791 CGAACCAAATGAGACATTTCTACTGA 59.631 38.462 6.73 0.00 29.47 3.41
6 7 6.537566 CGAACCAAATGAGACATTTCTACTG 58.462 40.000 6.73 0.00 29.47 2.74
7 8 5.122396 GCGAACCAAATGAGACATTTCTACT 59.878 40.000 6.73 0.00 29.47 2.57
8 9 5.106712 TGCGAACCAAATGAGACATTTCTAC 60.107 40.000 6.73 0.74 29.47 2.59
9 10 5.000591 TGCGAACCAAATGAGACATTTCTA 58.999 37.500 6.73 0.00 29.47 2.10
10 11 3.820467 TGCGAACCAAATGAGACATTTCT 59.180 39.130 6.73 0.00 33.37 2.52
11 12 3.914364 GTGCGAACCAAATGAGACATTTC 59.086 43.478 6.73 0.00 0.00 2.17
12 13 3.569701 AGTGCGAACCAAATGAGACATTT 59.430 39.130 4.22 4.22 0.00 2.32
13 14 3.149196 AGTGCGAACCAAATGAGACATT 58.851 40.909 0.00 0.00 0.00 2.71
14 15 2.783135 AGTGCGAACCAAATGAGACAT 58.217 42.857 0.00 0.00 0.00 3.06
15 16 2.254546 AGTGCGAACCAAATGAGACA 57.745 45.000 0.00 0.00 0.00 3.41
16 17 2.290641 ACAAGTGCGAACCAAATGAGAC 59.709 45.455 0.00 0.00 0.00 3.36
17 18 2.571212 ACAAGTGCGAACCAAATGAGA 58.429 42.857 0.00 0.00 0.00 3.27
18 19 4.406069 CATACAAGTGCGAACCAAATGAG 58.594 43.478 0.00 0.00 0.00 2.90
19 20 3.190327 CCATACAAGTGCGAACCAAATGA 59.810 43.478 0.00 0.00 0.00 2.57
20 21 3.500982 CCATACAAGTGCGAACCAAATG 58.499 45.455 0.00 0.00 0.00 2.32
21 22 2.094752 GCCATACAAGTGCGAACCAAAT 60.095 45.455 0.00 0.00 0.00 2.32
22 23 1.268352 GCCATACAAGTGCGAACCAAA 59.732 47.619 0.00 0.00 0.00 3.28
23 24 0.878416 GCCATACAAGTGCGAACCAA 59.122 50.000 0.00 0.00 0.00 3.67
24 25 2.550487 GCCATACAAGTGCGAACCA 58.450 52.632 0.00 0.00 0.00 3.67
30 31 1.308998 AATAGCCGCCATACAAGTGC 58.691 50.000 0.00 0.00 0.00 4.40
31 32 2.806244 GGTAATAGCCGCCATACAAGTG 59.194 50.000 0.00 0.00 0.00 3.16
32 33 2.436542 TGGTAATAGCCGCCATACAAGT 59.563 45.455 0.00 0.00 0.00 3.16
33 34 2.806244 GTGGTAATAGCCGCCATACAAG 59.194 50.000 0.00 0.00 34.52 3.16
34 35 2.170817 TGTGGTAATAGCCGCCATACAA 59.829 45.455 0.00 0.00 38.20 2.41
35 36 1.763545 TGTGGTAATAGCCGCCATACA 59.236 47.619 0.00 0.00 38.20 2.29
36 37 2.536761 TGTGGTAATAGCCGCCATAC 57.463 50.000 0.00 0.00 38.20 2.39
37 38 2.027561 GGATGTGGTAATAGCCGCCATA 60.028 50.000 0.00 0.00 38.20 2.74
38 39 1.271379 GGATGTGGTAATAGCCGCCAT 60.271 52.381 0.00 0.00 38.20 4.40
39 40 0.107831 GGATGTGGTAATAGCCGCCA 59.892 55.000 0.00 0.00 38.20 5.69
40 41 0.605589 GGGATGTGGTAATAGCCGCC 60.606 60.000 0.00 0.00 38.20 6.13
41 42 0.107831 TGGGATGTGGTAATAGCCGC 59.892 55.000 0.00 0.00 39.37 6.53
42 43 2.631160 TTGGGATGTGGTAATAGCCG 57.369 50.000 0.00 0.00 0.00 5.52
43 44 4.709886 AGTTTTTGGGATGTGGTAATAGCC 59.290 41.667 0.00 0.00 0.00 3.93
44 45 5.914898 AGTTTTTGGGATGTGGTAATAGC 57.085 39.130 0.00 0.00 0.00 2.97
45 46 7.416326 GCCTAAGTTTTTGGGATGTGGTAATAG 60.416 40.741 0.00 0.00 37.11 1.73
46 47 6.378848 GCCTAAGTTTTTGGGATGTGGTAATA 59.621 38.462 0.00 0.00 37.11 0.98
47 48 5.186992 GCCTAAGTTTTTGGGATGTGGTAAT 59.813 40.000 0.00 0.00 37.11 1.89
48 49 4.525100 GCCTAAGTTTTTGGGATGTGGTAA 59.475 41.667 0.00 0.00 37.11 2.85
49 50 4.083565 GCCTAAGTTTTTGGGATGTGGTA 58.916 43.478 0.00 0.00 37.11 3.25
50 51 2.897326 GCCTAAGTTTTTGGGATGTGGT 59.103 45.455 0.00 0.00 37.11 4.16
51 52 3.056607 CAGCCTAAGTTTTTGGGATGTGG 60.057 47.826 0.49 0.00 43.81 4.17
52 53 3.056607 CCAGCCTAAGTTTTTGGGATGTG 60.057 47.826 7.07 0.00 46.38 3.21
53 54 3.165071 CCAGCCTAAGTTTTTGGGATGT 58.835 45.455 7.07 0.00 46.38 3.06
58 59 3.255888 GTCTTCCCAGCCTAAGTTTTTGG 59.744 47.826 0.00 0.00 0.00 3.28
59 60 4.022849 CAGTCTTCCCAGCCTAAGTTTTTG 60.023 45.833 0.00 0.00 0.00 2.44
60 61 4.145052 CAGTCTTCCCAGCCTAAGTTTTT 58.855 43.478 0.00 0.00 0.00 1.94
61 62 3.498661 CCAGTCTTCCCAGCCTAAGTTTT 60.499 47.826 0.00 0.00 0.00 2.43
62 63 2.040412 CCAGTCTTCCCAGCCTAAGTTT 59.960 50.000 0.00 0.00 0.00 2.66
63 64 1.630878 CCAGTCTTCCCAGCCTAAGTT 59.369 52.381 0.00 0.00 0.00 2.66
64 65 1.203313 TCCAGTCTTCCCAGCCTAAGT 60.203 52.381 0.00 0.00 0.00 2.24
65 66 1.573108 TCCAGTCTTCCCAGCCTAAG 58.427 55.000 0.00 0.00 0.00 2.18
66 67 1.909302 CTTCCAGTCTTCCCAGCCTAA 59.091 52.381 0.00 0.00 0.00 2.69
67 68 1.078823 TCTTCCAGTCTTCCCAGCCTA 59.921 52.381 0.00 0.00 0.00 3.93
68 69 0.178891 TCTTCCAGTCTTCCCAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
69 70 0.693049 TTCTTCCAGTCTTCCCAGCC 59.307 55.000 0.00 0.00 0.00 4.85
70 71 2.363683 CATTCTTCCAGTCTTCCCAGC 58.636 52.381 0.00 0.00 0.00 4.85
71 72 2.943199 GCCATTCTTCCAGTCTTCCCAG 60.943 54.545 0.00 0.00 0.00 4.45
72 73 1.004745 GCCATTCTTCCAGTCTTCCCA 59.995 52.381 0.00 0.00 0.00 4.37
73 74 1.004745 TGCCATTCTTCCAGTCTTCCC 59.995 52.381 0.00 0.00 0.00 3.97
91 92 4.083110 ACTCAGAATTGTGTTGCACTATGC 60.083 41.667 2.11 0.00 45.29 3.14
152 153 5.205056 TCTGTTTGGATGGGTTACAGTTTT 58.795 37.500 0.00 0.00 37.90 2.43
200 201 0.968901 TCGCCTTTCCTCTTCGCCTA 60.969 55.000 0.00 0.00 0.00 3.93
202 203 2.101233 GTCGCCTTTCCTCTTCGCC 61.101 63.158 0.00 0.00 0.00 5.54
218 219 1.758514 TCGAGGCTGGGATCTGGTC 60.759 63.158 0.00 0.00 0.00 4.02
305 306 5.782925 ACTATCTACAAACAGGGAGAGGAT 58.217 41.667 0.00 0.00 0.00 3.24
315 316 7.455638 ACCTAACCCTACAACTATCTACAAACA 59.544 37.037 0.00 0.00 0.00 2.83
375 376 4.367450 GAAGATTTATCTGACGCTGCTCT 58.633 43.478 0.00 0.00 37.19 4.09
425 592 0.980423 ACAAGACCTTCCAGCCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
431 598 3.054802 AGCTCCAATACAAGACCTTCCAG 60.055 47.826 0.00 0.00 0.00 3.86
472 639 1.590238 CATTGAGATCGCCACGAAGAC 59.410 52.381 0.00 0.00 39.99 3.01
478 645 1.766143 GACGGCATTGAGATCGCCAC 61.766 60.000 8.95 0.00 46.60 5.01
479 646 1.521457 GACGGCATTGAGATCGCCA 60.521 57.895 8.95 0.00 46.60 5.69
491 658 2.342279 CCAAACCTCTCGACGGCA 59.658 61.111 0.00 0.00 0.00 5.69
714 893 7.011295 CACATGCCACACAAAATTAAAGTTTCT 59.989 33.333 0.00 0.00 0.00 2.52
715 894 7.125113 CACATGCCACACAAAATTAAAGTTTC 58.875 34.615 0.00 0.00 0.00 2.78
789 973 5.106673 GGTTGCTAACGGGATGCTTTATATC 60.107 44.000 0.00 0.00 0.00 1.63
800 984 3.706600 ATTGTAAGGTTGCTAACGGGA 57.293 42.857 0.00 0.00 0.00 5.14
888 1074 5.535029 TCTCTCTCTCTCTCTAACCCTAGT 58.465 45.833 0.00 0.00 0.00 2.57
1005 1286 0.178918 GGTGCTCTAGGGATAGGCCT 60.179 60.000 11.78 11.78 36.66 5.19
1375 2202 4.260907 CGATGAGTTGTGATAATTGCTGGG 60.261 45.833 0.00 0.00 0.00 4.45
1378 2205 4.194640 AGCGATGAGTTGTGATAATTGCT 58.805 39.130 0.00 0.00 33.96 3.91
1407 2234 2.423538 GGCACAAAGTTAGCATGGTAGG 59.576 50.000 4.57 0.00 0.00 3.18
1412 2239 1.967762 CACGGCACAAAGTTAGCATG 58.032 50.000 0.00 0.00 0.00 4.06
1413 2240 0.240945 GCACGGCACAAAGTTAGCAT 59.759 50.000 0.00 0.00 0.00 3.79
1534 2434 9.884465 GGTCTGATAAATTTATTATGTGCAGAC 57.116 33.333 27.55 27.55 44.53 3.51
1758 2664 2.669391 GCTGTGAAAATCTTGGCCTTCG 60.669 50.000 3.32 0.00 0.00 3.79
1900 2806 2.029964 GGGGCGACGAAGACACAA 59.970 61.111 0.00 0.00 0.00 3.33
1918 2824 2.094675 TGACTCACGATGATGCTGAGA 58.905 47.619 4.09 0.00 35.86 3.27
1936 2842 8.771920 ATACAACAAAGTTTATCTGTCGATGA 57.228 30.769 0.00 0.00 0.00 2.92
1981 2895 7.334171 ACAGTTAGTTAACACGTACAAAAGGTT 59.666 33.333 8.61 0.00 38.62 3.50
2006 2927 3.279434 GGGGAAAGGACATGACACATAC 58.721 50.000 0.00 0.00 0.00 2.39
2014 2935 2.397815 TCCCTGGGGAAAGGACATG 58.602 57.895 14.00 0.00 42.05 3.21
2125 3049 4.759782 CGACCTATTTGTCCTTGATGAGT 58.240 43.478 0.00 0.00 31.35 3.41
2143 3067 4.603231 TGATGTTTTAATTACCGCGACC 57.397 40.909 8.23 0.00 0.00 4.79
2177 3105 7.955864 GGAATGCGTATCTATCGGAAAATTAAC 59.044 37.037 0.00 0.00 31.94 2.01
2185 3113 4.462834 AGAATGGAATGCGTATCTATCGGA 59.537 41.667 0.00 0.00 0.00 4.55
2203 3131 3.918591 GTCAGTGCAAATGCTTGAGAATG 59.081 43.478 6.97 0.00 42.66 2.67
2231 3173 6.364976 GGAGCTGCAAATAAAACGTTAATTGT 59.635 34.615 0.00 0.00 34.07 2.71
2240 3182 4.376146 TGTTTGGGAGCTGCAAATAAAAC 58.624 39.130 7.79 9.60 0.00 2.43
2245 3187 1.551883 GGATGTTTGGGAGCTGCAAAT 59.448 47.619 7.79 0.00 0.00 2.32
2324 3266 1.078848 GAGATTGCTCACTGCCGGT 60.079 57.895 1.90 0.00 40.96 5.28
2337 3282 2.849318 CCTCTTTCCCCTCCTTGAGATT 59.151 50.000 0.00 0.00 0.00 2.40
2372 3317 3.575351 GACAACGTGCTCCTCCGCT 62.575 63.158 0.00 0.00 0.00 5.52
2393 3338 6.425721 TCTTTTCGATCTTACCAACGTTGATT 59.574 34.615 29.35 17.39 0.00 2.57
2405 3350 2.481449 GCCGGAGCTCTTTTCGATCTTA 60.481 50.000 14.64 0.00 35.50 2.10
2454 3399 3.443045 GCTGGGGATGGCGTTGTG 61.443 66.667 0.00 0.00 0.00 3.33
2455 3400 3.925630 CTGCTGGGGATGGCGTTGT 62.926 63.158 0.00 0.00 0.00 3.32
2463 3408 3.486685 AGCGCATCTGCTGGGGAT 61.487 61.111 11.47 0.00 45.28 3.85
2471 3422 3.574445 GCCTCAGCAGCGCATCTG 61.574 66.667 18.99 18.99 45.62 2.90
2495 3446 0.540365 CCATCACTTGTTGCCCTGGT 60.540 55.000 0.00 0.00 0.00 4.00
2498 3449 1.973281 CGCCATCACTTGTTGCCCT 60.973 57.895 0.00 0.00 0.00 5.19
2607 3561 6.199531 TCGTTAACAAATATCGTGCCTCATAC 59.800 38.462 6.39 0.00 0.00 2.39
2636 3590 2.101582 GCCCTAGGATATAGCCATGTCG 59.898 54.545 11.48 0.00 0.00 4.35
2660 3614 4.400961 GAGGAGCGCCAGTTGCCT 62.401 66.667 9.88 0.92 36.24 4.75
2664 3618 2.604686 TGGAGAGGAGCGCCAGTT 60.605 61.111 9.88 0.00 41.91 3.16
2754 3708 5.009210 GGCACCATACTTTTAACTCACAACA 59.991 40.000 0.00 0.00 0.00 3.33
2799 3753 3.521947 ACACGTTGTATTCTAGGCCTC 57.478 47.619 9.68 0.00 0.00 4.70
2800 3754 3.975168 AACACGTTGTATTCTAGGCCT 57.025 42.857 11.78 11.78 0.00 5.19
2801 3755 3.998341 TCAAACACGTTGTATTCTAGGCC 59.002 43.478 0.00 0.00 38.47 5.19
2803 3757 5.347907 GGAGTCAAACACGTTGTATTCTAGG 59.652 44.000 0.00 0.00 38.47 3.02
2844 3799 4.201657 TGGAGCTGTAATTGATGTGGATG 58.798 43.478 0.00 0.00 0.00 3.51
2868 3823 7.902920 ATTGTAGCCAAAGGATTACATGAAT 57.097 32.000 0.00 0.00 33.44 2.57
2881 3836 6.656632 TTTGTGTGGAATATTGTAGCCAAA 57.343 33.333 0.00 0.00 33.44 3.28
2910 3865 5.369404 AGAAAATGTCCCTGTTCCCAATTTT 59.631 36.000 0.00 0.00 0.00 1.82
2967 3923 8.715191 AAATTAAAACTGTGTGCATTTTCAGA 57.285 26.923 14.09 0.00 29.05 3.27
3000 3957 8.770438 TTCGGAAAAATATTCCCATTTTCAAG 57.230 30.769 11.06 5.87 42.18 3.02
3104 4061 7.113544 CGATGCCTTTTCTTTAACTTCAAGTTC 59.886 37.037 5.92 0.00 39.51 3.01
3113 4070 6.315393 TGGTATCTCGATGCCTTTTCTTTAAC 59.685 38.462 13.89 0.00 43.03 2.01
3119 4076 3.134458 CCTGGTATCTCGATGCCTTTTC 58.866 50.000 13.89 0.00 43.03 2.29
3136 4093 8.134202 AGGTTTATTAACTGAATTTTCCCTGG 57.866 34.615 0.00 0.00 34.59 4.45
3160 4117 5.417580 TCCAATTTTCGGAACCTTATGGAAG 59.582 40.000 0.81 0.00 37.04 3.46
3237 4194 3.487372 GAGGTTTCTGCCTGGTTTAACT 58.513 45.455 0.00 0.00 39.34 2.24
3277 4234 7.812191 CCATTTAAATTGTTCTCATTCGTTCCA 59.188 33.333 0.00 0.00 0.00 3.53
3314 4271 3.377798 GGTCGACAAAACAACAGGGTTTA 59.622 43.478 18.91 0.00 39.93 2.01
3382 4373 1.571773 GCCTAAGGAGCAAAGGGGGA 61.572 60.000 0.00 0.00 0.00 4.81
3399 4390 0.317160 CAACTTTTCTTTCGGGGGCC 59.683 55.000 0.00 0.00 0.00 5.80
3449 4440 0.179124 GAGCGAGCTACTCCACTTGG 60.179 60.000 0.00 0.00 0.00 3.61
3450 4441 0.524392 CGAGCGAGCTACTCCACTTG 60.524 60.000 9.95 0.00 0.00 3.16
3451 4442 0.961358 ACGAGCGAGCTACTCCACTT 60.961 55.000 9.95 0.00 0.00 3.16
3452 4443 1.377463 ACGAGCGAGCTACTCCACT 60.377 57.895 9.95 0.00 0.00 4.00
3453 4444 1.226435 CACGAGCGAGCTACTCCAC 60.226 63.158 9.95 0.00 0.00 4.02
3454 4445 0.748367 ATCACGAGCGAGCTACTCCA 60.748 55.000 9.95 0.00 0.00 3.86
3455 4446 0.040781 GATCACGAGCGAGCTACTCC 60.041 60.000 9.95 0.00 0.00 3.85
3456 4447 0.658368 TGATCACGAGCGAGCTACTC 59.342 55.000 0.00 6.22 0.00 2.59
3457 4448 0.378962 GTGATCACGAGCGAGCTACT 59.621 55.000 10.69 0.00 0.00 2.57
3458 4449 0.378962 AGTGATCACGAGCGAGCTAC 59.621 55.000 19.85 0.00 36.20 3.58
3459 4450 1.598132 GTAGTGATCACGAGCGAGCTA 59.402 52.381 19.85 1.79 36.20 3.32
3460 4451 0.378962 GTAGTGATCACGAGCGAGCT 59.621 55.000 19.85 0.00 36.20 4.09
3461 4452 0.378962 AGTAGTGATCACGAGCGAGC 59.621 55.000 19.85 3.01 36.20 5.03
3462 4453 1.003331 GGAGTAGTGATCACGAGCGAG 60.003 57.143 19.85 0.00 36.20 5.03
3463 4454 1.015109 GGAGTAGTGATCACGAGCGA 58.985 55.000 19.85 2.12 36.20 4.93
3464 4455 0.029567 GGGAGTAGTGATCACGAGCG 59.970 60.000 19.85 0.00 36.20 5.03
3465 4456 1.103803 TGGGAGTAGTGATCACGAGC 58.896 55.000 19.85 13.49 36.20 5.03
3466 4457 2.099921 CCTTGGGAGTAGTGATCACGAG 59.900 54.545 19.85 4.07 36.20 4.18
3467 4458 2.100197 CCTTGGGAGTAGTGATCACGA 58.900 52.381 19.85 12.58 36.20 4.35
3468 4459 2.099921 CTCCTTGGGAGTAGTGATCACG 59.900 54.545 19.85 2.62 44.25 4.35
3469 4460 3.810310 CTCCTTGGGAGTAGTGATCAC 57.190 52.381 18.47 18.47 44.25 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.