Multiple sequence alignment - TraesCS6B01G419800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G419800 chr6B 100.000 2402 0 0 1 2402 691342389 691339988 0.000000e+00 4436.0
1 TraesCS6B01G419800 chr6B 83.716 522 41 16 610 1105 424071685 424071182 1.010000e-123 453.0
2 TraesCS6B01G419800 chr6B 81.437 167 28 3 92 255 14777012 14776846 1.500000e-27 134.0
3 TraesCS6B01G419800 chr5B 98.001 2051 15 9 95 2119 408226470 408224420 0.000000e+00 3537.0
4 TraesCS6B01G419800 chr3A 90.387 1446 95 18 95 1499 705292595 705291153 0.000000e+00 1860.0
5 TraesCS6B01G419800 chr3A 74.018 331 66 17 1793 2117 705291016 705290700 1.510000e-22 117.0
6 TraesCS6B01G419800 chr7D 85.309 599 75 12 1571 2162 25580033 25579441 7.340000e-170 606.0
7 TraesCS6B01G419800 chr1B 84.557 531 46 15 601 1105 353272038 353272558 5.970000e-136 494.0
8 TraesCS6B01G419800 chr1B 88.968 281 24 1 294 567 353271485 353271765 8.220000e-90 340.0
9 TraesCS6B01G419800 chrUn 84.674 522 45 16 610 1105 363669897 363669385 2.780000e-134 488.0
10 TraesCS6B01G419800 chr3B 84.369 531 48 16 601 1105 680233396 680233917 2.780000e-134 488.0
11 TraesCS6B01G419800 chr3B 84.674 522 45 16 610 1105 733623710 733623198 2.780000e-134 488.0
12 TraesCS6B01G419800 chr3B 79.459 185 30 8 77 255 807594937 807595119 9.020000e-25 124.0
13 TraesCS6B01G419800 chr3B 100.000 29 0 0 2116 2144 65155040 65155012 1.000000e-03 54.7
14 TraesCS6B01G419800 chr7A 84.483 522 46 16 610 1105 608484131 608483619 1.290000e-132 483.0
15 TraesCS6B01G419800 chr7A 100.000 29 0 0 2116 2144 704604519 704604491 1.000000e-03 54.7
16 TraesCS6B01G419800 chr4B 83.804 531 51 16 601 1105 396523022 396523543 2.800000e-129 472.0
17 TraesCS6B01G419800 chr4B 81.098 164 28 3 95 255 237990367 237990530 6.970000e-26 128.0
18 TraesCS6B01G419800 chr6A 87.147 389 23 10 1137 1499 57427011 57426624 1.330000e-112 416.0
19 TraesCS6B01G419800 chr6A 90.566 53 3 2 1793 1844 57426487 57426436 4.280000e-08 69.4
20 TraesCS6B01G419800 chr7B 88.889 279 24 1 296 567 654306081 654305803 1.060000e-88 337.0
21 TraesCS6B01G419800 chr6D 97.015 201 5 1 2157 2356 454649777 454649577 1.060000e-88 337.0
22 TraesCS6B01G419800 chr6D 97.778 45 1 0 2358 2402 454649550 454649506 7.120000e-11 78.7
23 TraesCS6B01G419800 chr5A 83.754 357 38 13 783 1135 502029874 502030214 1.070000e-83 320.0
24 TraesCS6B01G419800 chr2B 88.710 186 16 4 1519 1701 773087005 773086822 3.110000e-54 222.0
25 TraesCS6B01G419800 chr2B 87.097 186 24 0 1564 1749 794583437 794583622 6.730000e-51 211.0
26 TraesCS6B01G419800 chr2B 82.031 128 16 5 1331 1454 676939250 676939374 4.220000e-18 102.0
27 TraesCS6B01G419800 chr2A 92.308 52 4 0 1394 1445 22110018 22110069 9.210000e-10 75.0
28 TraesCS6B01G419800 chr2D 91.667 48 4 0 2116 2163 31564870 31564823 1.540000e-07 67.6
29 TraesCS6B01G419800 chr1D 100.000 29 0 0 2116 2144 425050459 425050487 1.000000e-03 54.7
30 TraesCS6B01G419800 chr1D 86.000 50 7 0 2116 2165 477501212 477501163 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G419800 chr6B 691339988 691342389 2401 True 4436.0 4436 100.0000 1 2402 1 chr6B.!!$R3 2401
1 TraesCS6B01G419800 chr6B 424071182 424071685 503 True 453.0 453 83.7160 610 1105 1 chr6B.!!$R2 495
2 TraesCS6B01G419800 chr5B 408224420 408226470 2050 True 3537.0 3537 98.0010 95 2119 1 chr5B.!!$R1 2024
3 TraesCS6B01G419800 chr3A 705290700 705292595 1895 True 988.5 1860 82.2025 95 2117 2 chr3A.!!$R1 2022
4 TraesCS6B01G419800 chr7D 25579441 25580033 592 True 606.0 606 85.3090 1571 2162 1 chr7D.!!$R1 591
5 TraesCS6B01G419800 chr1B 353271485 353272558 1073 False 417.0 494 86.7625 294 1105 2 chr1B.!!$F1 811
6 TraesCS6B01G419800 chrUn 363669385 363669897 512 True 488.0 488 84.6740 610 1105 1 chrUn.!!$R1 495
7 TraesCS6B01G419800 chr3B 680233396 680233917 521 False 488.0 488 84.3690 601 1105 1 chr3B.!!$F1 504
8 TraesCS6B01G419800 chr3B 733623198 733623710 512 True 488.0 488 84.6740 610 1105 1 chr3B.!!$R2 495
9 TraesCS6B01G419800 chr7A 608483619 608484131 512 True 483.0 483 84.4830 610 1105 1 chr7A.!!$R1 495
10 TraesCS6B01G419800 chr4B 396523022 396523543 521 False 472.0 472 83.8040 601 1105 1 chr4B.!!$F2 504
11 TraesCS6B01G419800 chr6A 57426436 57427011 575 True 242.7 416 88.8565 1137 1844 2 chr6A.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 143 2.497675 CTCCCCCACCGATATCTATGTG 59.502 54.545 0.34 5.67 0.00 3.21 F
1144 1422 3.374402 AGCTCCGCGTACTGCAGT 61.374 61.111 25.12 25.12 46.97 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1645 5.344743 TCCTCGTATTTTCTCTCTGCAAT 57.655 39.13 0.0 0.0 0.00 3.56 R
2365 2706 0.033503 TGAGATGCCCACTCGGTAGA 60.034 55.00 0.0 0.0 37.22 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.862371 AAAAATGAACATGTGTTTGTTAGTACA 57.138 25.926 0.00 0.00 39.85 2.90
46 47 8.850454 AAATGAACATGTGTTTGTTAGTACAC 57.150 30.769 0.00 0.00 43.76 2.90
55 56 8.078959 TGTGTTTGTTAGTACACATATGACAC 57.921 34.615 10.38 9.04 46.93 3.67
56 57 7.929245 TGTGTTTGTTAGTACACATATGACACT 59.071 33.333 10.38 11.06 46.93 3.55
57 58 8.770828 GTGTTTGTTAGTACACATATGACACTT 58.229 33.333 10.38 0.00 43.15 3.16
58 59 8.984764 TGTTTGTTAGTACACATATGACACTTC 58.015 33.333 10.38 6.81 32.98 3.01
59 60 9.204570 GTTTGTTAGTACACATATGACACTTCT 57.795 33.333 10.38 2.96 32.98 2.85
60 61 9.772973 TTTGTTAGTACACATATGACACTTCTT 57.227 29.630 10.38 0.00 32.98 2.52
62 63 9.850628 TGTTAGTACACATATGACACTTCTTAC 57.149 33.333 10.38 5.06 0.00 2.34
140 142 2.821437 CTCCCCCACCGATATCTATGT 58.179 52.381 0.34 0.00 0.00 2.29
141 143 2.497675 CTCCCCCACCGATATCTATGTG 59.502 54.545 0.34 5.67 0.00 3.21
659 909 8.088981 ACGTAATATCCAGCTTCTTGGTTATAG 58.911 37.037 0.00 0.00 39.35 1.31
1144 1422 3.374402 AGCTCCGCGTACTGCAGT 61.374 61.111 25.12 25.12 46.97 4.40
2043 2383 2.578021 ACAGGGCATTGATTAGGACAGT 59.422 45.455 0.00 0.00 0.00 3.55
2068 2408 5.641709 GCGAATCTATATGAGATCCAACGA 58.358 41.667 0.00 0.00 44.68 3.85
2122 2463 5.065914 GCTCCTCTGTAATTTCCATATGCA 58.934 41.667 0.00 0.00 0.00 3.96
2125 2466 6.604171 TCCTCTGTAATTTCCATATGCATGT 58.396 36.000 10.16 0.00 0.00 3.21
2126 2467 7.062322 TCCTCTGTAATTTCCATATGCATGTT 58.938 34.615 10.16 0.00 0.00 2.71
2138 2479 9.899661 TTCCATATGCATGTTACTACTTTAAGT 57.100 29.630 10.16 2.32 0.00 2.24
2145 2486 9.991906 TGCATGTTACTACTTTAAGTTACTCTT 57.008 29.630 1.94 0.00 39.89 2.85
2162 2503 8.989131 AGTTACTCTTCATTATAACCAGCCTAA 58.011 33.333 0.00 0.00 0.00 2.69
2163 2504 9.043079 GTTACTCTTCATTATAACCAGCCTAAC 57.957 37.037 0.00 0.00 0.00 2.34
2164 2505 6.281405 ACTCTTCATTATAACCAGCCTAACG 58.719 40.000 0.00 0.00 0.00 3.18
2165 2506 5.054477 TCTTCATTATAACCAGCCTAACGC 58.946 41.667 0.00 0.00 37.98 4.84
2174 2515 2.583593 GCCTAACGCTGCCGAGAG 60.584 66.667 0.00 0.00 38.29 3.20
2194 2535 4.582760 GTCGCCACGATTGGTACA 57.417 55.556 0.00 0.00 45.98 2.90
2195 2536 2.369870 GTCGCCACGATTGGTACAG 58.630 57.895 0.00 0.00 45.98 2.74
2196 2537 0.108992 GTCGCCACGATTGGTACAGA 60.109 55.000 0.00 0.00 45.98 3.41
2197 2538 0.108992 TCGCCACGATTGGTACAGAC 60.109 55.000 0.00 0.00 45.98 3.51
2198 2539 0.108804 CGCCACGATTGGTACAGACT 60.109 55.000 0.00 0.00 45.98 3.24
2199 2540 1.641577 GCCACGATTGGTACAGACTC 58.358 55.000 0.00 0.00 45.98 3.36
2200 2541 1.909376 CCACGATTGGTACAGACTCG 58.091 55.000 0.00 0.05 42.39 4.18
2201 2542 1.471287 CCACGATTGGTACAGACTCGA 59.529 52.381 11.62 0.00 42.39 4.04
2202 2543 2.478031 CCACGATTGGTACAGACTCGAG 60.478 54.545 11.84 11.84 42.39 4.04
2203 2544 1.743958 ACGATTGGTACAGACTCGAGG 59.256 52.381 18.41 1.00 42.39 4.63
2204 2545 1.743958 CGATTGGTACAGACTCGAGGT 59.256 52.381 18.41 7.73 42.39 3.85
2205 2546 2.223294 CGATTGGTACAGACTCGAGGTC 60.223 54.545 18.41 11.71 42.39 3.85
2206 2547 2.281539 TTGGTACAGACTCGAGGTCA 57.718 50.000 18.41 1.29 46.72 4.02
2207 2548 1.822506 TGGTACAGACTCGAGGTCAG 58.177 55.000 18.41 10.96 46.72 3.51
2208 2549 1.350019 TGGTACAGACTCGAGGTCAGA 59.650 52.381 18.41 0.00 46.72 3.27
2209 2550 2.011222 GGTACAGACTCGAGGTCAGAG 58.989 57.143 18.41 8.49 46.72 3.35
2210 2551 1.399089 GTACAGACTCGAGGTCAGAGC 59.601 57.143 18.41 0.00 46.72 4.09
2211 2552 0.250945 ACAGACTCGAGGTCAGAGCA 60.251 55.000 18.41 0.00 46.72 4.26
2212 2553 0.884514 CAGACTCGAGGTCAGAGCAA 59.115 55.000 18.41 0.00 46.72 3.91
2213 2554 1.476085 CAGACTCGAGGTCAGAGCAAT 59.524 52.381 18.41 0.00 46.72 3.56
2214 2555 2.685388 CAGACTCGAGGTCAGAGCAATA 59.315 50.000 18.41 0.00 46.72 1.90
2215 2556 3.129462 CAGACTCGAGGTCAGAGCAATAA 59.871 47.826 18.41 0.00 46.72 1.40
2216 2557 3.957497 AGACTCGAGGTCAGAGCAATAAT 59.043 43.478 18.41 0.00 46.72 1.28
2217 2558 4.404073 AGACTCGAGGTCAGAGCAATAATT 59.596 41.667 18.41 0.00 46.72 1.40
2218 2559 5.091261 ACTCGAGGTCAGAGCAATAATTT 57.909 39.130 18.41 0.00 39.23 1.82
2219 2560 5.112686 ACTCGAGGTCAGAGCAATAATTTC 58.887 41.667 18.41 0.00 39.23 2.17
2220 2561 5.105146 ACTCGAGGTCAGAGCAATAATTTCT 60.105 40.000 18.41 0.00 39.23 2.52
2221 2562 6.096987 ACTCGAGGTCAGAGCAATAATTTCTA 59.903 38.462 18.41 0.00 39.23 2.10
2222 2563 7.055667 TCGAGGTCAGAGCAATAATTTCTAT 57.944 36.000 1.66 0.00 0.00 1.98
2223 2564 7.148641 TCGAGGTCAGAGCAATAATTTCTATC 58.851 38.462 1.66 0.00 0.00 2.08
2224 2565 6.925718 CGAGGTCAGAGCAATAATTTCTATCA 59.074 38.462 1.66 0.00 0.00 2.15
2225 2566 7.095857 CGAGGTCAGAGCAATAATTTCTATCAC 60.096 40.741 1.66 0.00 0.00 3.06
2226 2567 7.568349 AGGTCAGAGCAATAATTTCTATCACA 58.432 34.615 1.66 0.00 0.00 3.58
2227 2568 7.497249 AGGTCAGAGCAATAATTTCTATCACAC 59.503 37.037 1.66 0.00 0.00 3.82
2228 2569 7.254932 GGTCAGAGCAATAATTTCTATCACACC 60.255 40.741 0.00 0.00 0.00 4.16
2229 2570 7.497249 GTCAGAGCAATAATTTCTATCACACCT 59.503 37.037 0.00 0.00 0.00 4.00
2230 2571 7.712639 TCAGAGCAATAATTTCTATCACACCTC 59.287 37.037 0.00 0.00 0.00 3.85
2231 2572 6.995091 AGAGCAATAATTTCTATCACACCTCC 59.005 38.462 0.00 0.00 0.00 4.30
2232 2573 6.662755 AGCAATAATTTCTATCACACCTCCA 58.337 36.000 0.00 0.00 0.00 3.86
2233 2574 7.118723 AGCAATAATTTCTATCACACCTCCAA 58.881 34.615 0.00 0.00 0.00 3.53
2234 2575 7.615365 AGCAATAATTTCTATCACACCTCCAAA 59.385 33.333 0.00 0.00 0.00 3.28
2235 2576 8.416329 GCAATAATTTCTATCACACCTCCAAAT 58.584 33.333 0.00 0.00 0.00 2.32
2240 2581 9.699410 AATTTCTATCACACCTCCAAATAATCA 57.301 29.630 0.00 0.00 0.00 2.57
2241 2582 8.506168 TTTCTATCACACCTCCAAATAATCAC 57.494 34.615 0.00 0.00 0.00 3.06
2242 2583 6.591935 TCTATCACACCTCCAAATAATCACC 58.408 40.000 0.00 0.00 0.00 4.02
2243 2584 3.963129 TCACACCTCCAAATAATCACCC 58.037 45.455 0.00 0.00 0.00 4.61
2244 2585 3.332187 TCACACCTCCAAATAATCACCCA 59.668 43.478 0.00 0.00 0.00 4.51
2245 2586 4.085733 CACACCTCCAAATAATCACCCAA 58.914 43.478 0.00 0.00 0.00 4.12
2246 2587 4.711355 CACACCTCCAAATAATCACCCAAT 59.289 41.667 0.00 0.00 0.00 3.16
2247 2588 5.890985 CACACCTCCAAATAATCACCCAATA 59.109 40.000 0.00 0.00 0.00 1.90
2248 2589 6.039717 CACACCTCCAAATAATCACCCAATAG 59.960 42.308 0.00 0.00 0.00 1.73
2249 2590 6.129179 CACCTCCAAATAATCACCCAATAGT 58.871 40.000 0.00 0.00 0.00 2.12
2250 2591 6.039717 CACCTCCAAATAATCACCCAATAGTG 59.960 42.308 0.00 0.00 39.20 2.74
2251 2592 5.010012 CCTCCAAATAATCACCCAATAGTGC 59.990 44.000 0.00 0.00 37.68 4.40
2252 2593 4.892934 TCCAAATAATCACCCAATAGTGCC 59.107 41.667 0.00 0.00 37.68 5.01
2253 2594 4.261572 CCAAATAATCACCCAATAGTGCCG 60.262 45.833 0.00 0.00 37.68 5.69
2254 2595 1.961793 TAATCACCCAATAGTGCCGC 58.038 50.000 0.00 0.00 37.68 6.53
2255 2596 0.751643 AATCACCCAATAGTGCCGCC 60.752 55.000 0.00 0.00 37.68 6.13
2256 2597 2.940890 ATCACCCAATAGTGCCGCCG 62.941 60.000 0.00 0.00 37.68 6.46
2260 2601 3.876198 CAATAGTGCCGCCGCCAC 61.876 66.667 0.00 0.00 0.00 5.01
2271 2612 2.584064 CCGCCACCATGAGCACTA 59.416 61.111 0.00 0.00 0.00 2.74
2272 2613 1.078497 CCGCCACCATGAGCACTAA 60.078 57.895 0.00 0.00 0.00 2.24
2273 2614 0.676466 CCGCCACCATGAGCACTAAA 60.676 55.000 0.00 0.00 0.00 1.85
2274 2615 1.164411 CGCCACCATGAGCACTAAAA 58.836 50.000 0.00 0.00 0.00 1.52
2275 2616 1.539388 CGCCACCATGAGCACTAAAAA 59.461 47.619 0.00 0.00 0.00 1.94
2276 2617 2.164219 CGCCACCATGAGCACTAAAAAT 59.836 45.455 0.00 0.00 0.00 1.82
2277 2618 3.376859 CGCCACCATGAGCACTAAAAATA 59.623 43.478 0.00 0.00 0.00 1.40
2278 2619 4.036734 CGCCACCATGAGCACTAAAAATAT 59.963 41.667 0.00 0.00 0.00 1.28
2279 2620 5.523369 GCCACCATGAGCACTAAAAATATC 58.477 41.667 0.00 0.00 0.00 1.63
2280 2621 5.751680 CCACCATGAGCACTAAAAATATCG 58.248 41.667 0.00 0.00 0.00 2.92
2281 2622 5.277974 CCACCATGAGCACTAAAAATATCGG 60.278 44.000 0.00 0.00 0.00 4.18
2282 2623 4.821805 ACCATGAGCACTAAAAATATCGGG 59.178 41.667 0.00 0.00 0.00 5.14
2283 2624 4.216257 CCATGAGCACTAAAAATATCGGGG 59.784 45.833 0.00 0.00 0.00 5.73
2284 2625 4.764050 TGAGCACTAAAAATATCGGGGA 57.236 40.909 0.00 0.00 0.00 4.81
2285 2626 5.105567 TGAGCACTAAAAATATCGGGGAA 57.894 39.130 0.00 0.00 0.00 3.97
2286 2627 5.123227 TGAGCACTAAAAATATCGGGGAAG 58.877 41.667 0.00 0.00 0.00 3.46
2287 2628 3.883489 AGCACTAAAAATATCGGGGAAGC 59.117 43.478 0.00 0.00 0.00 3.86
2288 2629 3.630312 GCACTAAAAATATCGGGGAAGCA 59.370 43.478 0.00 0.00 0.00 3.91
2289 2630 4.278419 GCACTAAAAATATCGGGGAAGCAT 59.722 41.667 0.00 0.00 0.00 3.79
2290 2631 5.562890 GCACTAAAAATATCGGGGAAGCATC 60.563 44.000 0.00 0.00 0.00 3.91
2291 2632 5.530915 CACTAAAAATATCGGGGAAGCATCA 59.469 40.000 0.00 0.00 0.00 3.07
2292 2633 4.918810 AAAAATATCGGGGAAGCATCAC 57.081 40.909 0.00 0.00 0.00 3.06
2293 2634 2.568623 AATATCGGGGAAGCATCACC 57.431 50.000 0.00 0.00 46.53 4.02
2299 2640 3.713902 GGGAAGCATCACCATCGAT 57.286 52.632 0.00 0.00 0.00 3.59
2300 2641 1.233019 GGGAAGCATCACCATCGATG 58.767 55.000 18.76 18.76 44.69 3.84
2311 2652 2.113860 CCATCGATGGTTTGGTGAGT 57.886 50.000 32.39 0.00 43.05 3.41
2312 2653 1.739466 CCATCGATGGTTTGGTGAGTG 59.261 52.381 32.39 5.93 43.05 3.51
2313 2654 2.615240 CCATCGATGGTTTGGTGAGTGA 60.615 50.000 32.39 0.00 43.05 3.41
2314 2655 2.455674 TCGATGGTTTGGTGAGTGAG 57.544 50.000 0.00 0.00 0.00 3.51
2315 2656 1.967779 TCGATGGTTTGGTGAGTGAGA 59.032 47.619 0.00 0.00 0.00 3.27
2316 2657 2.029020 TCGATGGTTTGGTGAGTGAGAG 60.029 50.000 0.00 0.00 0.00 3.20
2317 2658 2.029020 CGATGGTTTGGTGAGTGAGAGA 60.029 50.000 0.00 0.00 0.00 3.10
2318 2659 2.910688 TGGTTTGGTGAGTGAGAGAC 57.089 50.000 0.00 0.00 0.00 3.36
2319 2660 1.068588 TGGTTTGGTGAGTGAGAGACG 59.931 52.381 0.00 0.00 0.00 4.18
2320 2661 1.340248 GGTTTGGTGAGTGAGAGACGA 59.660 52.381 0.00 0.00 0.00 4.20
2321 2662 2.608261 GGTTTGGTGAGTGAGAGACGAG 60.608 54.545 0.00 0.00 0.00 4.18
2322 2663 1.248486 TTGGTGAGTGAGAGACGAGG 58.752 55.000 0.00 0.00 0.00 4.63
2323 2664 0.609406 TGGTGAGTGAGAGACGAGGG 60.609 60.000 0.00 0.00 0.00 4.30
2324 2665 0.609681 GGTGAGTGAGAGACGAGGGT 60.610 60.000 0.00 0.00 0.00 4.34
2325 2666 0.523966 GTGAGTGAGAGACGAGGGTG 59.476 60.000 0.00 0.00 0.00 4.61
2326 2667 1.244697 TGAGTGAGAGACGAGGGTGC 61.245 60.000 0.00 0.00 0.00 5.01
2327 2668 0.963355 GAGTGAGAGACGAGGGTGCT 60.963 60.000 0.00 0.00 0.00 4.40
2328 2669 0.328592 AGTGAGAGACGAGGGTGCTA 59.671 55.000 0.00 0.00 0.00 3.49
2329 2670 0.452585 GTGAGAGACGAGGGTGCTAC 59.547 60.000 0.00 0.00 0.00 3.58
2330 2671 0.037734 TGAGAGACGAGGGTGCTACA 59.962 55.000 0.00 0.00 0.00 2.74
2331 2672 1.174783 GAGAGACGAGGGTGCTACAA 58.825 55.000 0.00 0.00 0.00 2.41
2332 2673 1.751924 GAGAGACGAGGGTGCTACAAT 59.248 52.381 0.00 0.00 0.00 2.71
2333 2674 1.478510 AGAGACGAGGGTGCTACAATG 59.521 52.381 0.00 0.00 0.00 2.82
2334 2675 0.537188 AGACGAGGGTGCTACAATGG 59.463 55.000 0.00 0.00 0.00 3.16
2335 2676 1.078426 ACGAGGGTGCTACAATGGC 60.078 57.895 0.00 0.00 0.00 4.40
2336 2677 1.819632 CGAGGGTGCTACAATGGCC 60.820 63.158 0.00 0.00 0.00 5.36
2337 2678 1.819632 GAGGGTGCTACAATGGCCG 60.820 63.158 0.00 0.00 0.00 6.13
2338 2679 3.518068 GGGTGCTACAATGGCCGC 61.518 66.667 0.00 0.00 0.00 6.53
2339 2680 3.518068 GGTGCTACAATGGCCGCC 61.518 66.667 1.04 1.04 0.00 6.13
2340 2681 2.749839 GTGCTACAATGGCCGCCA 60.750 61.111 16.17 16.17 38.19 5.69
2341 2682 2.749839 TGCTACAATGGCCGCCAC 60.750 61.111 16.16 0.74 35.80 5.01
2342 2683 3.518068 GCTACAATGGCCGCCACC 61.518 66.667 16.16 0.00 35.80 4.61
2343 2684 2.045438 CTACAATGGCCGCCACCA 60.045 61.111 16.16 0.00 45.82 4.17
2344 2685 1.677300 CTACAATGGCCGCCACCAA 60.677 57.895 16.16 0.00 44.65 3.67
2345 2686 1.933115 CTACAATGGCCGCCACCAAC 61.933 60.000 16.16 0.00 44.65 3.77
2346 2687 4.067913 CAATGGCCGCCACCAACC 62.068 66.667 16.16 0.00 44.65 3.77
2347 2688 4.612279 AATGGCCGCCACCAACCA 62.612 61.111 16.16 0.00 44.65 3.67
2348 2689 3.903281 AATGGCCGCCACCAACCAT 62.903 57.895 16.16 0.00 44.65 3.55
2358 2699 4.885426 CCAACCATGGGAGGATCG 57.115 61.111 18.09 0.00 43.51 3.69
2359 2700 2.220953 CCAACCATGGGAGGATCGA 58.779 57.895 18.09 0.00 43.51 3.59
2360 2701 0.767375 CCAACCATGGGAGGATCGAT 59.233 55.000 18.09 0.00 43.51 3.59
2361 2702 1.544093 CCAACCATGGGAGGATCGATG 60.544 57.143 18.09 0.79 43.51 3.84
2362 2703 0.767375 AACCATGGGAGGATCGATGG 59.233 55.000 18.09 0.00 46.08 3.51
2363 2704 1.002868 CCATGGGAGGATCGATGGC 60.003 63.158 0.54 0.00 38.48 4.40
2364 2705 1.756665 CATGGGAGGATCGATGGCA 59.243 57.895 0.54 0.00 34.37 4.92
2365 2706 0.327259 CATGGGAGGATCGATGGCAT 59.673 55.000 0.54 0.00 34.37 4.40
2366 2707 0.617413 ATGGGAGGATCGATGGCATC 59.383 55.000 17.58 17.58 34.37 3.91
2367 2708 0.472543 TGGGAGGATCGATGGCATCT 60.473 55.000 23.97 7.44 34.37 2.90
2368 2709 1.203174 TGGGAGGATCGATGGCATCTA 60.203 52.381 23.97 14.82 34.37 1.98
2369 2710 1.205893 GGGAGGATCGATGGCATCTAC 59.794 57.143 23.97 14.46 34.37 2.59
2370 2711 1.205893 GGAGGATCGATGGCATCTACC 59.794 57.143 23.97 21.30 34.37 3.18
2371 2712 0.891373 AGGATCGATGGCATCTACCG 59.109 55.000 23.97 12.46 0.00 4.02
2372 2713 0.888619 GGATCGATGGCATCTACCGA 59.111 55.000 23.97 17.24 0.00 4.69
2373 2714 1.135257 GGATCGATGGCATCTACCGAG 60.135 57.143 23.97 8.51 32.60 4.63
2374 2715 1.542030 GATCGATGGCATCTACCGAGT 59.458 52.381 23.97 8.06 32.60 4.18
2375 2716 0.668535 TCGATGGCATCTACCGAGTG 59.331 55.000 23.97 7.11 0.00 3.51
2376 2717 0.319040 CGATGGCATCTACCGAGTGG 60.319 60.000 23.97 2.60 42.84 4.00
2377 2718 0.034059 GATGGCATCTACCGAGTGGG 59.966 60.000 20.08 0.00 40.75 4.61
2378 2719 2.044806 ATGGCATCTACCGAGTGGGC 62.045 60.000 0.00 0.00 40.62 5.36
2379 2720 2.731571 GGCATCTACCGAGTGGGCA 61.732 63.158 0.00 0.00 40.62 5.36
2380 2721 1.447643 GCATCTACCGAGTGGGCAT 59.552 57.895 0.00 0.00 40.62 4.40
2381 2722 0.601311 GCATCTACCGAGTGGGCATC 60.601 60.000 0.00 0.00 40.62 3.91
2382 2723 1.043816 CATCTACCGAGTGGGCATCT 58.956 55.000 0.00 0.00 40.62 2.90
2383 2724 1.000283 CATCTACCGAGTGGGCATCTC 60.000 57.143 0.00 0.00 40.62 2.75
2384 2725 0.033503 TCTACCGAGTGGGCATCTCA 60.034 55.000 8.44 0.00 40.62 3.27
2385 2726 0.387202 CTACCGAGTGGGCATCTCAG 59.613 60.000 8.44 0.80 40.62 3.35
2386 2727 1.676678 TACCGAGTGGGCATCTCAGC 61.677 60.000 8.44 0.00 40.62 4.26
2387 2728 2.580815 CGAGTGGGCATCTCAGCA 59.419 61.111 8.44 0.00 35.83 4.41
2388 2729 1.812922 CGAGTGGGCATCTCAGCAC 60.813 63.158 8.44 0.00 38.76 4.40
2389 2730 1.601171 GAGTGGGCATCTCAGCACT 59.399 57.895 0.00 0.00 39.15 4.40
2390 2731 0.035630 GAGTGGGCATCTCAGCACTT 60.036 55.000 0.00 0.00 39.15 3.16
2391 2732 0.403271 AGTGGGCATCTCAGCACTTT 59.597 50.000 0.00 0.00 39.15 2.66
2392 2733 0.807496 GTGGGCATCTCAGCACTTTC 59.193 55.000 0.00 0.00 39.15 2.62
2393 2734 0.401356 TGGGCATCTCAGCACTTTCA 59.599 50.000 0.00 0.00 39.15 2.69
2394 2735 1.202915 TGGGCATCTCAGCACTTTCAA 60.203 47.619 0.00 0.00 39.15 2.69
2395 2736 1.471684 GGGCATCTCAGCACTTTCAAG 59.528 52.381 0.00 0.00 34.32 3.02
2396 2737 1.471684 GGCATCTCAGCACTTTCAAGG 59.528 52.381 0.00 0.00 35.83 3.61
2397 2738 2.430465 GCATCTCAGCACTTTCAAGGA 58.570 47.619 0.00 0.00 0.00 3.36
2398 2739 2.161211 GCATCTCAGCACTTTCAAGGAC 59.839 50.000 0.00 0.00 0.00 3.85
2399 2740 2.154854 TCTCAGCACTTTCAAGGACG 57.845 50.000 0.00 0.00 0.00 4.79
2400 2741 1.412710 TCTCAGCACTTTCAAGGACGT 59.587 47.619 0.00 0.00 0.00 4.34
2401 2742 2.158957 TCTCAGCACTTTCAAGGACGTT 60.159 45.455 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.862371 TGTACTAACAAACACATGTTCATTTTT 57.138 25.926 0.00 0.00 42.33 1.94
20 21 9.296400 GTGTACTAACAAACACATGTTCATTTT 57.704 29.630 0.00 0.00 44.30 1.82
21 22 8.850454 GTGTACTAACAAACACATGTTCATTT 57.150 30.769 0.00 0.00 44.30 2.32
31 32 8.306680 AGTGTCATATGTGTACTAACAAACAC 57.693 34.615 1.90 5.35 44.97 3.32
32 33 8.896320 AAGTGTCATATGTGTACTAACAAACA 57.104 30.769 1.90 0.00 37.36 2.83
33 34 9.204570 AGAAGTGTCATATGTGTACTAACAAAC 57.795 33.333 1.90 0.00 37.36 2.93
34 35 9.772973 AAGAAGTGTCATATGTGTACTAACAAA 57.227 29.630 1.90 0.00 37.36 2.83
36 37 9.850628 GTAAGAAGTGTCATATGTGTACTAACA 57.149 33.333 1.90 0.00 0.00 2.41
72 73 8.922237 CATCCCATGCATATACTCTATCTTACT 58.078 37.037 0.00 0.00 0.00 2.24
73 74 8.918116 TCATCCCATGCATATACTCTATCTTAC 58.082 37.037 0.00 0.00 0.00 2.34
74 75 9.140874 CTCATCCCATGCATATACTCTATCTTA 57.859 37.037 0.00 0.00 0.00 2.10
75 76 7.070946 CCTCATCCCATGCATATACTCTATCTT 59.929 40.741 0.00 0.00 0.00 2.40
76 77 6.554228 CCTCATCCCATGCATATACTCTATCT 59.446 42.308 0.00 0.00 0.00 1.98
77 78 6.552725 TCCTCATCCCATGCATATACTCTATC 59.447 42.308 0.00 0.00 0.00 2.08
78 79 6.447326 TCCTCATCCCATGCATATACTCTAT 58.553 40.000 0.00 0.00 0.00 1.98
79 80 5.842339 TCCTCATCCCATGCATATACTCTA 58.158 41.667 0.00 0.00 0.00 2.43
80 81 4.692328 TCCTCATCCCATGCATATACTCT 58.308 43.478 0.00 0.00 0.00 3.24
81 82 5.627182 ATCCTCATCCCATGCATATACTC 57.373 43.478 0.00 0.00 0.00 2.59
82 83 6.185511 CAAATCCTCATCCCATGCATATACT 58.814 40.000 0.00 0.00 0.00 2.12
83 84 5.948162 ACAAATCCTCATCCCATGCATATAC 59.052 40.000 0.00 0.00 0.00 1.47
84 85 6.143551 ACAAATCCTCATCCCATGCATATA 57.856 37.500 0.00 0.00 0.00 0.86
85 86 5.006896 ACAAATCCTCATCCCATGCATAT 57.993 39.130 0.00 0.00 0.00 1.78
86 87 4.458256 ACAAATCCTCATCCCATGCATA 57.542 40.909 0.00 0.00 0.00 3.14
87 88 3.323774 ACAAATCCTCATCCCATGCAT 57.676 42.857 0.00 0.00 0.00 3.96
88 89 2.832643 ACAAATCCTCATCCCATGCA 57.167 45.000 0.00 0.00 0.00 3.96
89 90 2.555757 GCTACAAATCCTCATCCCATGC 59.444 50.000 0.00 0.00 0.00 4.06
90 91 3.567164 GTGCTACAAATCCTCATCCCATG 59.433 47.826 0.00 0.00 0.00 3.66
91 92 3.202818 TGTGCTACAAATCCTCATCCCAT 59.797 43.478 0.00 0.00 0.00 4.00
92 93 2.575735 TGTGCTACAAATCCTCATCCCA 59.424 45.455 0.00 0.00 0.00 4.37
93 94 3.281727 TGTGCTACAAATCCTCATCCC 57.718 47.619 0.00 0.00 0.00 3.85
140 142 5.057819 TGAATTGGCTAAAGTAACGTGACA 58.942 37.500 5.68 0.00 0.00 3.58
141 143 5.600908 TGAATTGGCTAAAGTAACGTGAC 57.399 39.130 0.00 0.00 0.00 3.67
1342 1645 5.344743 TCCTCGTATTTTCTCTCTGCAAT 57.655 39.130 0.00 0.00 0.00 3.56
2043 2383 5.641709 GTTGGATCTCATATAGATTCGCGA 58.358 41.667 3.71 3.71 45.35 5.87
2133 2474 9.609346 GGCTGGTTATAATGAAGAGTAACTTAA 57.391 33.333 0.00 0.00 39.13 1.85
2136 2477 7.439108 AGGCTGGTTATAATGAAGAGTAACT 57.561 36.000 0.00 0.00 0.00 2.24
2138 2479 7.924412 CGTTAGGCTGGTTATAATGAAGAGTAA 59.076 37.037 0.00 0.00 0.00 2.24
2182 2523 2.478031 CCTCGAGTCTGTACCAATCGTG 60.478 54.545 12.31 8.53 35.05 4.35
2183 2524 1.743958 CCTCGAGTCTGTACCAATCGT 59.256 52.381 12.31 0.00 35.05 3.73
2184 2525 1.743958 ACCTCGAGTCTGTACCAATCG 59.256 52.381 12.31 5.64 34.80 3.34
2185 2526 2.753452 TGACCTCGAGTCTGTACCAATC 59.247 50.000 12.31 0.00 46.46 2.67
2186 2527 2.755655 CTGACCTCGAGTCTGTACCAAT 59.244 50.000 12.31 0.00 46.46 3.16
2187 2528 2.160205 CTGACCTCGAGTCTGTACCAA 58.840 52.381 12.31 0.00 46.46 3.67
2188 2529 1.350019 TCTGACCTCGAGTCTGTACCA 59.650 52.381 12.31 0.00 46.46 3.25
2189 2530 2.011222 CTCTGACCTCGAGTCTGTACC 58.989 57.143 12.31 0.00 46.46 3.34
2190 2531 1.399089 GCTCTGACCTCGAGTCTGTAC 59.601 57.143 12.31 6.47 46.46 2.90
2191 2532 1.003233 TGCTCTGACCTCGAGTCTGTA 59.997 52.381 12.31 2.03 46.46 2.74
2192 2533 0.250945 TGCTCTGACCTCGAGTCTGT 60.251 55.000 12.31 1.61 46.46 3.41
2193 2534 0.884514 TTGCTCTGACCTCGAGTCTG 59.115 55.000 12.31 12.39 46.46 3.51
2194 2535 1.846007 ATTGCTCTGACCTCGAGTCT 58.154 50.000 12.31 0.00 46.46 3.24
2195 2536 3.784701 TTATTGCTCTGACCTCGAGTC 57.215 47.619 12.31 9.61 46.51 3.36
2196 2537 4.744795 AATTATTGCTCTGACCTCGAGT 57.255 40.909 12.31 0.00 0.00 4.18
2197 2538 5.355596 AGAAATTATTGCTCTGACCTCGAG 58.644 41.667 5.13 5.13 0.00 4.04
2198 2539 5.344743 AGAAATTATTGCTCTGACCTCGA 57.655 39.130 0.00 0.00 0.00 4.04
2199 2540 6.925718 TGATAGAAATTATTGCTCTGACCTCG 59.074 38.462 0.00 0.00 0.00 4.63
2200 2541 7.712639 TGTGATAGAAATTATTGCTCTGACCTC 59.287 37.037 0.00 0.00 0.00 3.85
2201 2542 7.497249 GTGTGATAGAAATTATTGCTCTGACCT 59.503 37.037 0.00 0.00 0.00 3.85
2202 2543 7.254932 GGTGTGATAGAAATTATTGCTCTGACC 60.255 40.741 0.00 0.00 0.00 4.02
2203 2544 7.497249 AGGTGTGATAGAAATTATTGCTCTGAC 59.503 37.037 0.00 0.00 0.00 3.51
2204 2545 7.568349 AGGTGTGATAGAAATTATTGCTCTGA 58.432 34.615 0.00 0.00 0.00 3.27
2205 2546 7.041508 GGAGGTGTGATAGAAATTATTGCTCTG 60.042 40.741 0.00 0.00 0.00 3.35
2206 2547 6.995091 GGAGGTGTGATAGAAATTATTGCTCT 59.005 38.462 0.00 0.00 0.00 4.09
2207 2548 6.767902 TGGAGGTGTGATAGAAATTATTGCTC 59.232 38.462 0.00 0.00 0.00 4.26
2208 2549 6.662755 TGGAGGTGTGATAGAAATTATTGCT 58.337 36.000 0.00 0.00 0.00 3.91
2209 2550 6.942532 TGGAGGTGTGATAGAAATTATTGC 57.057 37.500 0.00 0.00 0.00 3.56
2214 2555 9.699410 TGATTATTTGGAGGTGTGATAGAAATT 57.301 29.630 0.00 0.00 0.00 1.82
2215 2556 9.125026 GTGATTATTTGGAGGTGTGATAGAAAT 57.875 33.333 0.00 0.00 0.00 2.17
2216 2557 7.556275 GGTGATTATTTGGAGGTGTGATAGAAA 59.444 37.037 0.00 0.00 0.00 2.52
2217 2558 7.054124 GGTGATTATTTGGAGGTGTGATAGAA 58.946 38.462 0.00 0.00 0.00 2.10
2218 2559 6.409234 GGGTGATTATTTGGAGGTGTGATAGA 60.409 42.308 0.00 0.00 0.00 1.98
2219 2560 5.765182 GGGTGATTATTTGGAGGTGTGATAG 59.235 44.000 0.00 0.00 0.00 2.08
2220 2561 5.192722 TGGGTGATTATTTGGAGGTGTGATA 59.807 40.000 0.00 0.00 0.00 2.15
2221 2562 4.017591 TGGGTGATTATTTGGAGGTGTGAT 60.018 41.667 0.00 0.00 0.00 3.06
2222 2563 3.332187 TGGGTGATTATTTGGAGGTGTGA 59.668 43.478 0.00 0.00 0.00 3.58
2223 2564 3.696045 TGGGTGATTATTTGGAGGTGTG 58.304 45.455 0.00 0.00 0.00 3.82
2224 2565 4.396357 TTGGGTGATTATTTGGAGGTGT 57.604 40.909 0.00 0.00 0.00 4.16
2225 2566 6.039717 CACTATTGGGTGATTATTTGGAGGTG 59.960 42.308 0.00 0.00 39.34 4.00
2226 2567 6.129179 CACTATTGGGTGATTATTTGGAGGT 58.871 40.000 0.00 0.00 39.34 3.85
2227 2568 5.010012 GCACTATTGGGTGATTATTTGGAGG 59.990 44.000 0.00 0.00 39.34 4.30
2228 2569 5.010012 GGCACTATTGGGTGATTATTTGGAG 59.990 44.000 0.00 0.00 39.34 3.86
2229 2570 4.892934 GGCACTATTGGGTGATTATTTGGA 59.107 41.667 0.00 0.00 39.34 3.53
2230 2571 4.261572 CGGCACTATTGGGTGATTATTTGG 60.262 45.833 0.00 0.00 39.34 3.28
2231 2572 4.792704 GCGGCACTATTGGGTGATTATTTG 60.793 45.833 0.00 0.00 39.34 2.32
2232 2573 3.317993 GCGGCACTATTGGGTGATTATTT 59.682 43.478 0.00 0.00 39.34 1.40
2233 2574 2.884639 GCGGCACTATTGGGTGATTATT 59.115 45.455 0.00 0.00 39.34 1.40
2234 2575 2.504367 GCGGCACTATTGGGTGATTAT 58.496 47.619 0.00 0.00 39.34 1.28
2235 2576 1.476110 GGCGGCACTATTGGGTGATTA 60.476 52.381 3.07 0.00 39.34 1.75
2236 2577 0.751643 GGCGGCACTATTGGGTGATT 60.752 55.000 3.07 0.00 39.34 2.57
2237 2578 1.152963 GGCGGCACTATTGGGTGAT 60.153 57.895 3.07 0.00 39.34 3.06
2238 2579 2.270850 GGCGGCACTATTGGGTGA 59.729 61.111 3.07 0.00 39.34 4.02
2239 2580 3.202001 CGGCGGCACTATTGGGTG 61.202 66.667 10.53 0.00 39.91 4.61
2253 2594 3.680620 TAGTGCTCATGGTGGCGGC 62.681 63.158 0.00 0.00 0.00 6.53
2254 2595 0.676466 TTTAGTGCTCATGGTGGCGG 60.676 55.000 0.00 0.00 0.00 6.13
2255 2596 1.164411 TTTTAGTGCTCATGGTGGCG 58.836 50.000 0.00 0.00 0.00 5.69
2256 2597 3.874392 ATTTTTAGTGCTCATGGTGGC 57.126 42.857 0.00 0.00 0.00 5.01
2257 2598 5.277974 CCGATATTTTTAGTGCTCATGGTGG 60.278 44.000 0.00 0.00 0.00 4.61
2258 2599 5.277974 CCCGATATTTTTAGTGCTCATGGTG 60.278 44.000 0.00 0.00 0.00 4.17
2259 2600 4.821805 CCCGATATTTTTAGTGCTCATGGT 59.178 41.667 0.00 0.00 0.00 3.55
2260 2601 4.216257 CCCCGATATTTTTAGTGCTCATGG 59.784 45.833 0.00 0.00 0.00 3.66
2261 2602 5.063204 TCCCCGATATTTTTAGTGCTCATG 58.937 41.667 0.00 0.00 0.00 3.07
2262 2603 5.304686 TCCCCGATATTTTTAGTGCTCAT 57.695 39.130 0.00 0.00 0.00 2.90
2263 2604 4.764050 TCCCCGATATTTTTAGTGCTCA 57.236 40.909 0.00 0.00 0.00 4.26
2264 2605 4.023963 GCTTCCCCGATATTTTTAGTGCTC 60.024 45.833 0.00 0.00 0.00 4.26
2265 2606 3.883489 GCTTCCCCGATATTTTTAGTGCT 59.117 43.478 0.00 0.00 0.00 4.40
2266 2607 3.630312 TGCTTCCCCGATATTTTTAGTGC 59.370 43.478 0.00 0.00 0.00 4.40
2267 2608 5.530915 TGATGCTTCCCCGATATTTTTAGTG 59.469 40.000 0.00 0.00 0.00 2.74
2268 2609 5.531287 GTGATGCTTCCCCGATATTTTTAGT 59.469 40.000 0.00 0.00 0.00 2.24
2269 2610 5.048713 GGTGATGCTTCCCCGATATTTTTAG 60.049 44.000 0.00 0.00 0.00 1.85
2270 2611 4.825085 GGTGATGCTTCCCCGATATTTTTA 59.175 41.667 0.00 0.00 0.00 1.52
2271 2612 3.636764 GGTGATGCTTCCCCGATATTTTT 59.363 43.478 0.00 0.00 0.00 1.94
2272 2613 3.222603 GGTGATGCTTCCCCGATATTTT 58.777 45.455 0.00 0.00 0.00 1.82
2273 2614 2.174639 TGGTGATGCTTCCCCGATATTT 59.825 45.455 0.00 0.00 0.00 1.40
2274 2615 1.774254 TGGTGATGCTTCCCCGATATT 59.226 47.619 0.00 0.00 0.00 1.28
2275 2616 1.434188 TGGTGATGCTTCCCCGATAT 58.566 50.000 0.00 0.00 0.00 1.63
2276 2617 1.347707 GATGGTGATGCTTCCCCGATA 59.652 52.381 0.00 0.00 0.00 2.92
2277 2618 0.109342 GATGGTGATGCTTCCCCGAT 59.891 55.000 0.00 0.00 0.00 4.18
2278 2619 1.526887 GATGGTGATGCTTCCCCGA 59.473 57.895 0.00 0.00 0.00 5.14
2279 2620 1.889105 CGATGGTGATGCTTCCCCG 60.889 63.158 0.00 0.00 0.00 5.73
2280 2621 0.109342 ATCGATGGTGATGCTTCCCC 59.891 55.000 0.00 0.00 0.00 4.81
2281 2622 1.233019 CATCGATGGTGATGCTTCCC 58.767 55.000 17.96 0.00 39.33 3.97
2282 2623 1.233019 CCATCGATGGTGATGCTTCC 58.767 55.000 32.39 0.00 43.52 3.46
2293 2634 2.674852 CTCACTCACCAAACCATCGATG 59.325 50.000 18.76 18.76 0.00 3.84
2294 2635 2.567169 TCTCACTCACCAAACCATCGAT 59.433 45.455 0.00 0.00 0.00 3.59
2295 2636 1.967779 TCTCACTCACCAAACCATCGA 59.032 47.619 0.00 0.00 0.00 3.59
2296 2637 2.029020 TCTCTCACTCACCAAACCATCG 60.029 50.000 0.00 0.00 0.00 3.84
2297 2638 3.330267 GTCTCTCACTCACCAAACCATC 58.670 50.000 0.00 0.00 0.00 3.51
2298 2639 2.289072 CGTCTCTCACTCACCAAACCAT 60.289 50.000 0.00 0.00 0.00 3.55
2299 2640 1.068588 CGTCTCTCACTCACCAAACCA 59.931 52.381 0.00 0.00 0.00 3.67
2300 2641 1.340248 TCGTCTCTCACTCACCAAACC 59.660 52.381 0.00 0.00 0.00 3.27
2301 2642 2.608261 CCTCGTCTCTCACTCACCAAAC 60.608 54.545 0.00 0.00 0.00 2.93
2302 2643 1.613925 CCTCGTCTCTCACTCACCAAA 59.386 52.381 0.00 0.00 0.00 3.28
2303 2644 1.248486 CCTCGTCTCTCACTCACCAA 58.752 55.000 0.00 0.00 0.00 3.67
2304 2645 0.609406 CCCTCGTCTCTCACTCACCA 60.609 60.000 0.00 0.00 0.00 4.17
2305 2646 0.609681 ACCCTCGTCTCTCACTCACC 60.610 60.000 0.00 0.00 0.00 4.02
2306 2647 0.523966 CACCCTCGTCTCTCACTCAC 59.476 60.000 0.00 0.00 0.00 3.51
2307 2648 1.244697 GCACCCTCGTCTCTCACTCA 61.245 60.000 0.00 0.00 0.00 3.41
2308 2649 0.963355 AGCACCCTCGTCTCTCACTC 60.963 60.000 0.00 0.00 0.00 3.51
2309 2650 0.328592 TAGCACCCTCGTCTCTCACT 59.671 55.000 0.00 0.00 0.00 3.41
2310 2651 0.452585 GTAGCACCCTCGTCTCTCAC 59.547 60.000 0.00 0.00 0.00 3.51
2311 2652 0.037734 TGTAGCACCCTCGTCTCTCA 59.962 55.000 0.00 0.00 0.00 3.27
2312 2653 1.174783 TTGTAGCACCCTCGTCTCTC 58.825 55.000 0.00 0.00 0.00 3.20
2313 2654 1.478510 CATTGTAGCACCCTCGTCTCT 59.521 52.381 0.00 0.00 0.00 3.10
2314 2655 1.471676 CCATTGTAGCACCCTCGTCTC 60.472 57.143 0.00 0.00 0.00 3.36
2315 2656 0.537188 CCATTGTAGCACCCTCGTCT 59.463 55.000 0.00 0.00 0.00 4.18
2316 2657 1.090052 GCCATTGTAGCACCCTCGTC 61.090 60.000 0.00 0.00 0.00 4.20
2317 2658 1.078426 GCCATTGTAGCACCCTCGT 60.078 57.895 0.00 0.00 0.00 4.18
2318 2659 1.819632 GGCCATTGTAGCACCCTCG 60.820 63.158 0.00 0.00 0.00 4.63
2319 2660 1.819632 CGGCCATTGTAGCACCCTC 60.820 63.158 2.24 0.00 0.00 4.30
2320 2661 2.272146 CGGCCATTGTAGCACCCT 59.728 61.111 2.24 0.00 0.00 4.34
2321 2662 3.518068 GCGGCCATTGTAGCACCC 61.518 66.667 2.24 0.00 0.00 4.61
2322 2663 3.518068 GGCGGCCATTGTAGCACC 61.518 66.667 15.62 0.00 0.00 5.01
2323 2664 2.749839 TGGCGGCCATTGTAGCAC 60.750 61.111 19.77 0.00 0.00 4.40
2324 2665 2.749839 GTGGCGGCCATTGTAGCA 60.750 61.111 26.68 0.00 35.28 3.49
2325 2666 3.518068 GGTGGCGGCCATTGTAGC 61.518 66.667 26.68 10.86 35.28 3.58
2326 2667 1.677300 TTGGTGGCGGCCATTGTAG 60.677 57.895 26.68 0.00 38.48 2.74
2327 2668 1.974343 GTTGGTGGCGGCCATTGTA 60.974 57.895 26.68 9.10 38.48 2.41
2328 2669 3.302344 GTTGGTGGCGGCCATTGT 61.302 61.111 26.68 0.00 38.48 2.71
2329 2670 4.067913 GGTTGGTGGCGGCCATTG 62.068 66.667 26.68 0.00 38.48 2.82
2330 2671 3.903281 ATGGTTGGTGGCGGCCATT 62.903 57.895 26.68 1.63 38.45 3.16
2331 2672 4.380945 ATGGTTGGTGGCGGCCAT 62.381 61.111 26.68 3.73 38.48 4.40
2335 2676 4.358841 TCCCATGGTTGGTGGCGG 62.359 66.667 11.73 0.00 41.91 6.13
2336 2677 2.751436 CTCCCATGGTTGGTGGCG 60.751 66.667 11.73 0.00 41.91 5.69
2337 2678 2.228841 ATCCTCCCATGGTTGGTGGC 62.229 60.000 11.73 0.00 41.91 5.01
2338 2679 0.106519 GATCCTCCCATGGTTGGTGG 60.107 60.000 11.73 6.14 41.91 4.61
2339 2680 0.464373 CGATCCTCCCATGGTTGGTG 60.464 60.000 11.73 0.00 41.91 4.17
2340 2681 0.620410 TCGATCCTCCCATGGTTGGT 60.620 55.000 11.73 3.41 41.91 3.67
2341 2682 0.767375 ATCGATCCTCCCATGGTTGG 59.233 55.000 11.73 12.25 43.23 3.77
2342 2683 1.544093 CCATCGATCCTCCCATGGTTG 60.544 57.143 11.73 2.45 32.49 3.77
2343 2684 0.767375 CCATCGATCCTCCCATGGTT 59.233 55.000 11.73 0.00 32.49 3.67
2344 2685 1.772819 GCCATCGATCCTCCCATGGT 61.773 60.000 11.73 0.00 38.49 3.55
2345 2686 1.002868 GCCATCGATCCTCCCATGG 60.003 63.158 4.14 4.14 39.15 3.66
2346 2687 0.327259 ATGCCATCGATCCTCCCATG 59.673 55.000 0.00 0.00 0.00 3.66
2347 2688 0.617413 GATGCCATCGATCCTCCCAT 59.383 55.000 0.00 0.00 0.00 4.00
2348 2689 0.472543 AGATGCCATCGATCCTCCCA 60.473 55.000 0.00 0.00 0.00 4.37
2349 2690 1.205893 GTAGATGCCATCGATCCTCCC 59.794 57.143 0.00 0.00 0.00 4.30
2350 2691 1.205893 GGTAGATGCCATCGATCCTCC 59.794 57.143 0.00 0.00 0.00 4.30
2351 2692 1.135257 CGGTAGATGCCATCGATCCTC 60.135 57.143 0.00 0.00 0.00 3.71
2352 2693 0.891373 CGGTAGATGCCATCGATCCT 59.109 55.000 0.00 0.00 0.00 3.24
2353 2694 0.888619 TCGGTAGATGCCATCGATCC 59.111 55.000 0.00 2.85 0.00 3.36
2354 2695 1.542030 ACTCGGTAGATGCCATCGATC 59.458 52.381 0.00 0.00 0.00 3.69
2355 2696 1.270826 CACTCGGTAGATGCCATCGAT 59.729 52.381 0.00 0.00 0.00 3.59
2356 2697 0.668535 CACTCGGTAGATGCCATCGA 59.331 55.000 0.00 0.00 0.00 3.59
2357 2698 0.319040 CCACTCGGTAGATGCCATCG 60.319 60.000 0.00 0.00 0.00 3.84
2358 2699 0.034059 CCCACTCGGTAGATGCCATC 59.966 60.000 0.00 0.00 0.00 3.51
2359 2700 2.044806 GCCCACTCGGTAGATGCCAT 62.045 60.000 0.00 0.00 0.00 4.40
2360 2701 2.731571 GCCCACTCGGTAGATGCCA 61.732 63.158 0.00 0.00 0.00 4.92
2361 2702 2.044806 ATGCCCACTCGGTAGATGCC 62.045 60.000 0.00 0.00 0.00 4.40
2362 2703 0.601311 GATGCCCACTCGGTAGATGC 60.601 60.000 0.00 0.00 0.00 3.91
2363 2704 1.000283 GAGATGCCCACTCGGTAGATG 60.000 57.143 0.00 0.00 0.00 2.90
2364 2705 1.333177 GAGATGCCCACTCGGTAGAT 58.667 55.000 0.00 0.00 0.00 1.98
2365 2706 0.033503 TGAGATGCCCACTCGGTAGA 60.034 55.000 0.00 0.00 37.22 2.59
2366 2707 0.387202 CTGAGATGCCCACTCGGTAG 59.613 60.000 0.00 0.00 36.40 3.18
2367 2708 1.676678 GCTGAGATGCCCACTCGGTA 61.677 60.000 0.00 0.00 41.28 4.02
2368 2709 3.023949 GCTGAGATGCCCACTCGGT 62.024 63.158 0.00 0.00 41.28 4.69
2369 2710 2.202987 GCTGAGATGCCCACTCGG 60.203 66.667 0.00 0.00 41.89 4.63
2370 2711 1.812922 GTGCTGAGATGCCCACTCG 60.813 63.158 0.00 0.00 37.22 4.18
2371 2712 0.035630 AAGTGCTGAGATGCCCACTC 60.036 55.000 0.00 0.00 37.55 3.51
2372 2713 0.403271 AAAGTGCTGAGATGCCCACT 59.597 50.000 0.00 0.00 40.02 4.00
2373 2714 0.807496 GAAAGTGCTGAGATGCCCAC 59.193 55.000 0.00 0.00 0.00 4.61
2374 2715 0.401356 TGAAAGTGCTGAGATGCCCA 59.599 50.000 0.00 0.00 0.00 5.36
2375 2716 1.471684 CTTGAAAGTGCTGAGATGCCC 59.528 52.381 0.00 0.00 0.00 5.36
2376 2717 1.471684 CCTTGAAAGTGCTGAGATGCC 59.528 52.381 0.00 0.00 0.00 4.40
2377 2718 2.161211 GTCCTTGAAAGTGCTGAGATGC 59.839 50.000 0.00 0.00 0.00 3.91
2378 2719 2.414481 CGTCCTTGAAAGTGCTGAGATG 59.586 50.000 0.00 0.00 0.00 2.90
2379 2720 2.037772 ACGTCCTTGAAAGTGCTGAGAT 59.962 45.455 0.00 0.00 0.00 2.75
2380 2721 1.412710 ACGTCCTTGAAAGTGCTGAGA 59.587 47.619 0.00 0.00 0.00 3.27
2381 2722 1.871080 ACGTCCTTGAAAGTGCTGAG 58.129 50.000 0.00 0.00 0.00 3.35
2382 2723 2.325583 AACGTCCTTGAAAGTGCTGA 57.674 45.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.