Multiple sequence alignment - TraesCS6B01G419000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G419000 chr6B 100.000 6208 0 0 949 7156 690955423 690961630 0.000000e+00 11465.0
1 TraesCS6B01G419000 chr6B 100.000 603 0 0 1 603 690954475 690955077 0.000000e+00 1114.0
2 TraesCS6B01G419000 chr6B 89.378 386 32 7 1772 2152 558489324 558489705 1.810000e-130 477.0
3 TraesCS6B01G419000 chr6B 90.710 183 16 1 1505 1687 558489130 558489311 7.170000e-60 243.0
4 TraesCS6B01G419000 chr6B 86.207 87 10 2 6497 6581 281611962 281611876 7.640000e-15 93.5
5 TraesCS6B01G419000 chr6D 94.016 3877 162 38 2666 6494 454481849 454485703 0.000000e+00 5810.0
6 TraesCS6B01G419000 chr6D 92.575 1697 79 28 979 2665 454480147 454481806 0.000000e+00 2392.0
7 TraesCS6B01G419000 chr6D 80.282 568 56 22 6645 7156 454485764 454486331 1.880000e-100 377.0
8 TraesCS6B01G419000 chr6D 81.875 320 19 16 314 603 454479333 454479643 4.320000e-57 233.0
9 TraesCS6B01G419000 chr6D 86.047 86 9 3 6502 6587 62819548 62819466 9.890000e-14 89.8
10 TraesCS6B01G419000 chr6A 94.168 2795 121 24 2668 5430 600672728 600675512 0.000000e+00 4220.0
11 TraesCS6B01G419000 chr6A 89.483 1084 76 17 5433 6498 600675559 600676622 0.000000e+00 1336.0
12 TraesCS6B01G419000 chr6A 89.950 995 58 25 949 1921 600670838 600671812 0.000000e+00 1245.0
13 TraesCS6B01G419000 chr6A 90.065 775 67 7 1893 2662 600671911 600672680 0.000000e+00 996.0
14 TraesCS6B01G419000 chr6A 95.489 133 4 1 471 603 600670279 600670409 2.020000e-50 211.0
15 TraesCS6B01G419000 chr6A 82.692 104 17 1 6874 6977 600693107 600693209 2.750000e-14 91.6
16 TraesCS6B01G419000 chr4D 89.773 88 7 2 6498 6583 252173704 252173791 2.110000e-20 111.0
17 TraesCS6B01G419000 chr3D 89.011 91 8 2 6496 6584 609944971 609945061 2.110000e-20 111.0
18 TraesCS6B01G419000 chr3D 90.769 65 5 1 1361 1425 447558796 447558733 1.280000e-12 86.1
19 TraesCS6B01G419000 chr3D 83.908 87 11 3 6497 6581 79601501 79601586 5.950000e-11 80.5
20 TraesCS6B01G419000 chr1D 88.764 89 8 2 6495 6581 406664976 406665064 2.730000e-19 108.0
21 TraesCS6B01G419000 chr1D 92.308 65 4 1 1361 1425 477424029 477423966 2.750000e-14 91.6
22 TraesCS6B01G419000 chr7A 88.235 85 9 1 1392 1475 7713361 7713445 4.570000e-17 100.0
23 TraesCS6B01G419000 chr4A 84.466 103 12 3 6482 6581 407215172 407215273 1.640000e-16 99.0
24 TraesCS6B01G419000 chr2D 84.091 88 12 2 6496 6581 369691746 369691833 4.600000e-12 84.2
25 TraesCS6B01G419000 chr2D 83.516 91 13 1 6495 6583 575186338 575186248 4.600000e-12 84.2
26 TraesCS6B01G419000 chr3B 92.857 42 3 0 7115 7156 665464502 665464543 2.160000e-05 62.1
27 TraesCS6B01G419000 chr5D 100.000 30 0 0 49 78 2325902 2325873 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G419000 chr6B 690954475 690961630 7155 False 6289.5 11465 100.000 1 7156 2 chr6B.!!$F2 7155
1 TraesCS6B01G419000 chr6B 558489130 558489705 575 False 360.0 477 90.044 1505 2152 2 chr6B.!!$F1 647
2 TraesCS6B01G419000 chr6D 454479333 454486331 6998 False 2203.0 5810 87.187 314 7156 4 chr6D.!!$F1 6842
3 TraesCS6B01G419000 chr6A 600670279 600676622 6343 False 1601.6 4220 91.831 471 6498 5 chr6A.!!$F2 6027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.107945 AGAAGCCAGACAAGCGATCC 60.108 55.000 0.00 0.00 34.64 3.36 F
216 217 0.178068 GCCTGATTCGCCAGTTAGGA 59.822 55.000 0.00 0.00 41.22 2.94 F
353 354 0.401395 TCACACCCTTCCTTCCCAGT 60.401 55.000 0.00 0.00 0.00 4.00 F
455 463 0.466922 GGCCCATCATTCAGACAGGG 60.467 60.000 0.00 0.00 44.16 4.45 F
1518 2049 1.056660 GGATCTGATCCCCGGCTTTA 58.943 55.000 23.45 0.00 43.88 1.85 F
2708 3427 0.901114 TGCTGCTGCATGTTTCCCAT 60.901 50.000 14.93 0.00 45.31 4.00 F
3671 4397 0.471617 AGATCTGCTATGGTGGCACC 59.528 55.000 29.75 29.75 39.22 5.01 F
4471 5198 0.764271 TGTTGCCTCATGGAGTGACA 59.236 50.000 0.00 0.00 34.57 3.58 F
5615 6424 1.269517 TGATGTTTTTGCAGGCCGTTC 60.270 47.619 0.00 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1681 0.178981 TTCTGCTGCTTCTTGGCCTT 60.179 50.000 3.32 0.0 0.00 4.35 R
1160 1682 0.608582 CTTCTGCTGCTTCTTGGCCT 60.609 55.000 3.32 0.0 0.00 5.19 R
1755 2286 0.666374 AAAAACAGGGCTTTCCGTCG 59.334 50.000 0.00 0.0 41.52 5.12 R
1971 2641 1.068434 ACTTTGCCAACCAAATCCACG 59.932 47.619 0.00 0.0 42.22 4.94 R
3205 3931 0.178981 AGCACAGCCCTGTTGACATT 60.179 50.000 0.00 0.0 42.83 2.71 R
4530 5257 1.404479 TTGGAGCACCACCACGTACT 61.404 55.000 0.85 0.0 46.80 2.73 R
5657 6466 1.079819 GTTGTGCGGCTCTGCTCTA 60.080 57.895 0.00 0.0 35.36 2.43 R
5672 6481 0.030638 CGCCAAAACTGACCTGGTTG 59.969 55.000 0.00 0.0 32.46 3.77 R
6813 7679 0.106419 ACCGTGGTGTGTTTTCCCAT 60.106 50.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.582437 AAATTGTGAATTTTGTCCGTGAAC 57.418 33.333 0.00 0.00 37.84 3.18
25 26 4.974368 TTGTGAATTTTGTCCGTGAACT 57.026 36.364 0.00 0.00 0.00 3.01
26 27 4.974368 TGTGAATTTTGTCCGTGAACTT 57.026 36.364 0.00 0.00 0.00 2.66
27 28 5.317733 TGTGAATTTTGTCCGTGAACTTT 57.682 34.783 0.00 0.00 0.00 2.66
28 29 5.715070 TGTGAATTTTGTCCGTGAACTTTT 58.285 33.333 0.00 0.00 0.00 2.27
29 30 5.802956 TGTGAATTTTGTCCGTGAACTTTTC 59.197 36.000 0.00 0.00 0.00 2.29
30 31 5.231357 GTGAATTTTGTCCGTGAACTTTTCC 59.769 40.000 0.00 0.00 0.00 3.13
31 32 3.786516 TTTTGTCCGTGAACTTTTCCC 57.213 42.857 0.00 0.00 0.00 3.97
32 33 2.421751 TTGTCCGTGAACTTTTCCCA 57.578 45.000 0.00 0.00 0.00 4.37
33 34 2.421751 TGTCCGTGAACTTTTCCCAA 57.578 45.000 0.00 0.00 0.00 4.12
34 35 2.724454 TGTCCGTGAACTTTTCCCAAA 58.276 42.857 0.00 0.00 0.00 3.28
35 36 3.292460 TGTCCGTGAACTTTTCCCAAAT 58.708 40.909 0.00 0.00 0.00 2.32
36 37 3.702045 TGTCCGTGAACTTTTCCCAAATT 59.298 39.130 0.00 0.00 0.00 1.82
37 38 4.202070 TGTCCGTGAACTTTTCCCAAATTC 60.202 41.667 0.00 0.00 0.00 2.17
38 39 3.954904 TCCGTGAACTTTTCCCAAATTCA 59.045 39.130 0.00 0.00 0.00 2.57
39 40 4.586841 TCCGTGAACTTTTCCCAAATTCAT 59.413 37.500 0.00 0.00 32.30 2.57
40 41 4.685628 CCGTGAACTTTTCCCAAATTCATG 59.314 41.667 0.00 0.00 36.49 3.07
41 42 5.508825 CCGTGAACTTTTCCCAAATTCATGA 60.509 40.000 6.15 0.00 38.15 3.07
42 43 6.158598 CGTGAACTTTTCCCAAATTCATGAT 58.841 36.000 0.00 0.00 38.15 2.45
43 44 6.308766 CGTGAACTTTTCCCAAATTCATGATC 59.691 38.462 0.00 0.00 38.15 2.92
44 45 7.381323 GTGAACTTTTCCCAAATTCATGATCT 58.619 34.615 0.00 0.00 32.30 2.75
45 46 7.874528 GTGAACTTTTCCCAAATTCATGATCTT 59.125 33.333 0.00 0.00 32.30 2.40
46 47 8.090214 TGAACTTTTCCCAAATTCATGATCTTC 58.910 33.333 0.00 0.00 0.00 2.87
47 48 6.939622 ACTTTTCCCAAATTCATGATCTTCC 58.060 36.000 0.00 0.00 0.00 3.46
48 49 6.727697 ACTTTTCCCAAATTCATGATCTTCCT 59.272 34.615 0.00 0.00 0.00 3.36
49 50 7.236225 ACTTTTCCCAAATTCATGATCTTCCTT 59.764 33.333 0.00 0.00 0.00 3.36
50 51 7.557875 TTTCCCAAATTCATGATCTTCCTTT 57.442 32.000 0.00 0.00 0.00 3.11
51 52 7.557875 TTCCCAAATTCATGATCTTCCTTTT 57.442 32.000 0.00 0.00 0.00 2.27
52 53 7.174107 TCCCAAATTCATGATCTTCCTTTTC 57.826 36.000 0.00 0.00 0.00 2.29
53 54 6.725369 TCCCAAATTCATGATCTTCCTTTTCA 59.275 34.615 0.00 0.00 0.00 2.69
54 55 7.235193 TCCCAAATTCATGATCTTCCTTTTCAA 59.765 33.333 0.00 0.00 0.00 2.69
55 56 7.879160 CCCAAATTCATGATCTTCCTTTTCAAA 59.121 33.333 0.00 0.00 0.00 2.69
56 57 9.444600 CCAAATTCATGATCTTCCTTTTCAAAT 57.555 29.630 0.00 0.00 0.00 2.32
61 62 9.701098 TTCATGATCTTCCTTTTCAAATTCTTG 57.299 29.630 0.00 0.00 0.00 3.02
62 63 9.081204 TCATGATCTTCCTTTTCAAATTCTTGA 57.919 29.630 0.00 0.00 39.87 3.02
107 108 9.719279 TCGTTTAAAATTTTCGTTAGTCAATGT 57.281 25.926 6.72 0.00 0.00 2.71
112 113 7.603297 AAATTTTCGTTAGTCAATGTTCACG 57.397 32.000 0.00 0.00 0.00 4.35
113 114 5.970140 TTTTCGTTAGTCAATGTTCACGA 57.030 34.783 0.00 0.00 35.00 4.35
114 115 5.970140 TTTCGTTAGTCAATGTTCACGAA 57.030 34.783 1.04 1.04 42.98 3.85
115 116 5.970140 TTCGTTAGTCAATGTTCACGAAA 57.030 34.783 2.65 0.00 42.06 3.46
116 117 5.970140 TCGTTAGTCAATGTTCACGAAAA 57.030 34.783 0.00 0.00 33.94 2.29
117 118 5.969741 TCGTTAGTCAATGTTCACGAAAAG 58.030 37.500 0.00 0.00 33.94 2.27
118 119 5.749588 TCGTTAGTCAATGTTCACGAAAAGA 59.250 36.000 0.00 0.00 33.94 2.52
119 120 6.256104 TCGTTAGTCAATGTTCACGAAAAGAA 59.744 34.615 0.00 0.00 33.94 2.52
120 121 6.570058 CGTTAGTCAATGTTCACGAAAAGAAG 59.430 38.462 0.00 0.00 0.00 2.85
121 122 4.848757 AGTCAATGTTCACGAAAAGAAGC 58.151 39.130 0.00 0.00 0.00 3.86
122 123 3.975035 GTCAATGTTCACGAAAAGAAGCC 59.025 43.478 0.00 0.00 0.00 4.35
123 124 3.629855 TCAATGTTCACGAAAAGAAGCCA 59.370 39.130 0.00 0.00 0.00 4.75
124 125 3.904136 ATGTTCACGAAAAGAAGCCAG 57.096 42.857 0.00 0.00 0.00 4.85
125 126 2.912771 TGTTCACGAAAAGAAGCCAGA 58.087 42.857 0.00 0.00 0.00 3.86
126 127 2.612212 TGTTCACGAAAAGAAGCCAGAC 59.388 45.455 0.00 0.00 0.00 3.51
127 128 2.612212 GTTCACGAAAAGAAGCCAGACA 59.388 45.455 0.00 0.00 0.00 3.41
128 129 2.912771 TCACGAAAAGAAGCCAGACAA 58.087 42.857 0.00 0.00 0.00 3.18
129 130 2.872245 TCACGAAAAGAAGCCAGACAAG 59.128 45.455 0.00 0.00 0.00 3.16
130 131 1.604278 ACGAAAAGAAGCCAGACAAGC 59.396 47.619 0.00 0.00 0.00 4.01
131 132 1.398960 CGAAAAGAAGCCAGACAAGCG 60.399 52.381 0.00 0.00 34.64 4.68
132 133 1.873591 GAAAAGAAGCCAGACAAGCGA 59.126 47.619 0.00 0.00 34.64 4.93
133 134 2.191128 AAAGAAGCCAGACAAGCGAT 57.809 45.000 0.00 0.00 34.64 4.58
134 135 1.731720 AAGAAGCCAGACAAGCGATC 58.268 50.000 0.00 0.00 34.64 3.69
135 136 0.107945 AGAAGCCAGACAAGCGATCC 60.108 55.000 0.00 0.00 34.64 3.36
136 137 1.424493 GAAGCCAGACAAGCGATCCG 61.424 60.000 0.00 0.00 34.64 4.18
137 138 2.859273 AAGCCAGACAAGCGATCCGG 62.859 60.000 0.00 0.00 34.64 5.14
138 139 2.892425 CCAGACAAGCGATCCGGC 60.892 66.667 0.00 0.00 0.00 6.13
140 141 2.169789 CAGACAAGCGATCCGGCTG 61.170 63.158 0.00 0.00 43.93 4.85
141 142 3.567797 GACAAGCGATCCGGCTGC 61.568 66.667 0.00 0.00 43.93 5.25
142 143 4.087892 ACAAGCGATCCGGCTGCT 62.088 61.111 8.82 8.82 43.93 4.24
144 145 2.821366 AAGCGATCCGGCTGCTTG 60.821 61.111 21.65 2.28 46.46 4.01
145 146 3.612247 AAGCGATCCGGCTGCTTGT 62.612 57.895 21.65 4.31 46.46 3.16
146 147 3.869272 GCGATCCGGCTGCTTGTG 61.869 66.667 0.00 0.00 0.00 3.33
147 148 3.869272 CGATCCGGCTGCTTGTGC 61.869 66.667 0.00 0.00 40.20 4.57
148 149 3.869272 GATCCGGCTGCTTGTGCG 61.869 66.667 0.00 0.00 43.34 5.34
152 153 3.422303 CGGCTGCTTGTGCGCTTA 61.422 61.111 9.73 0.00 43.34 3.09
153 154 2.176792 GGCTGCTTGTGCGCTTAC 59.823 61.111 9.73 0.00 43.34 2.34
154 155 2.202222 GCTGCTTGTGCGCTTACG 60.202 61.111 9.73 0.00 43.34 3.18
155 156 2.476051 CTGCTTGTGCGCTTACGG 59.524 61.111 9.73 0.00 43.34 4.02
156 157 3.027170 CTGCTTGTGCGCTTACGGG 62.027 63.158 9.73 0.00 43.34 5.28
157 158 3.799755 GCTTGTGCGCTTACGGGG 61.800 66.667 9.73 0.00 40.57 5.73
205 206 3.564027 CGAACCGGCGCCTGATTC 61.564 66.667 25.71 21.69 0.00 2.52
206 207 3.564027 GAACCGGCGCCTGATTCG 61.564 66.667 25.71 9.83 0.00 3.34
212 213 3.127533 GCGCCTGATTCGCCAGTT 61.128 61.111 0.00 0.00 46.18 3.16
213 214 1.813753 GCGCCTGATTCGCCAGTTA 60.814 57.895 0.00 0.00 46.18 2.24
214 215 1.766143 GCGCCTGATTCGCCAGTTAG 61.766 60.000 0.00 0.00 46.18 2.34
215 216 1.154205 CGCCTGATTCGCCAGTTAGG 61.154 60.000 0.00 0.00 41.84 2.69
216 217 0.178068 GCCTGATTCGCCAGTTAGGA 59.822 55.000 0.00 0.00 41.22 2.94
217 218 1.808133 GCCTGATTCGCCAGTTAGGAG 60.808 57.143 0.00 0.00 41.22 3.69
218 219 1.576356 CTGATTCGCCAGTTAGGAGC 58.424 55.000 0.00 0.00 41.22 4.70
219 220 1.137872 CTGATTCGCCAGTTAGGAGCT 59.862 52.381 0.00 0.00 41.22 4.09
220 221 1.555075 TGATTCGCCAGTTAGGAGCTT 59.445 47.619 0.00 0.00 41.22 3.74
221 222 2.027192 TGATTCGCCAGTTAGGAGCTTT 60.027 45.455 0.00 0.00 41.22 3.51
222 223 2.561478 TTCGCCAGTTAGGAGCTTTT 57.439 45.000 0.00 0.00 41.22 2.27
223 224 2.561478 TCGCCAGTTAGGAGCTTTTT 57.439 45.000 0.00 0.00 41.22 1.94
224 225 2.423577 TCGCCAGTTAGGAGCTTTTTC 58.576 47.619 0.00 0.00 41.22 2.29
225 226 2.038557 TCGCCAGTTAGGAGCTTTTTCT 59.961 45.455 0.00 0.00 41.22 2.52
226 227 2.814336 CGCCAGTTAGGAGCTTTTTCTT 59.186 45.455 0.00 0.00 41.22 2.52
227 228 3.120165 CGCCAGTTAGGAGCTTTTTCTTC 60.120 47.826 0.00 0.00 41.22 2.87
228 229 4.075682 GCCAGTTAGGAGCTTTTTCTTCT 58.924 43.478 0.00 0.00 41.22 2.85
229 230 4.520874 GCCAGTTAGGAGCTTTTTCTTCTT 59.479 41.667 0.00 0.00 41.22 2.52
230 231 5.335269 GCCAGTTAGGAGCTTTTTCTTCTTC 60.335 44.000 0.00 0.00 41.22 2.87
231 232 6.000840 CCAGTTAGGAGCTTTTTCTTCTTCT 58.999 40.000 0.00 0.00 41.22 2.85
232 233 6.488344 CCAGTTAGGAGCTTTTTCTTCTTCTT 59.512 38.462 0.00 0.00 41.22 2.52
233 234 7.308288 CCAGTTAGGAGCTTTTTCTTCTTCTTC 60.308 40.741 0.00 0.00 41.22 2.87
234 235 7.443879 CAGTTAGGAGCTTTTTCTTCTTCTTCT 59.556 37.037 0.00 0.00 0.00 2.85
235 236 8.652290 AGTTAGGAGCTTTTTCTTCTTCTTCTA 58.348 33.333 0.00 0.00 0.00 2.10
236 237 9.274206 GTTAGGAGCTTTTTCTTCTTCTTCTAA 57.726 33.333 0.00 0.00 0.00 2.10
237 238 9.847224 TTAGGAGCTTTTTCTTCTTCTTCTAAA 57.153 29.630 0.00 0.00 0.00 1.85
238 239 8.753497 AGGAGCTTTTTCTTCTTCTTCTAAAA 57.247 30.769 0.00 0.00 0.00 1.52
239 240 9.190317 AGGAGCTTTTTCTTCTTCTTCTAAAAA 57.810 29.630 0.00 0.00 0.00 1.94
240 241 9.457110 GGAGCTTTTTCTTCTTCTTCTAAAAAG 57.543 33.333 12.07 12.07 44.30 2.27
241 242 9.457110 GAGCTTTTTCTTCTTCTTCTAAAAAGG 57.543 33.333 16.09 2.09 42.88 3.11
242 243 9.190317 AGCTTTTTCTTCTTCTTCTAAAAAGGA 57.810 29.630 16.09 0.00 42.88 3.36
243 244 9.803315 GCTTTTTCTTCTTCTTCTAAAAAGGAA 57.197 29.630 16.09 0.00 42.88 3.36
246 247 9.695155 TTTTCTTCTTCTTCTAAAAAGGAAGGA 57.305 29.630 0.00 0.00 40.17 3.36
247 248 8.910351 TTCTTCTTCTTCTAAAAAGGAAGGAG 57.090 34.615 5.63 5.63 43.92 3.69
248 249 6.937465 TCTTCTTCTTCTAAAAAGGAAGGAGC 59.063 38.462 6.83 0.00 42.88 4.70
249 250 6.441088 TCTTCTTCTAAAAAGGAAGGAGCT 57.559 37.500 6.83 0.00 42.88 4.09
250 251 6.468543 TCTTCTTCTAAAAAGGAAGGAGCTC 58.531 40.000 4.71 4.71 42.88 4.09
251 252 5.167303 TCTTCTAAAAAGGAAGGAGCTCC 57.833 43.478 26.22 26.22 40.17 4.70
252 253 4.019231 TCTTCTAAAAAGGAAGGAGCTCCC 60.019 45.833 29.54 14.82 40.17 4.30
253 254 2.576648 TCTAAAAAGGAAGGAGCTCCCC 59.423 50.000 29.54 23.20 35.95 4.81
254 255 1.158007 AAAAAGGAAGGAGCTCCCCA 58.842 50.000 29.54 0.00 35.95 4.96
255 256 1.158007 AAAAGGAAGGAGCTCCCCAA 58.842 50.000 29.54 0.00 35.95 4.12
256 257 1.387119 AAAGGAAGGAGCTCCCCAAT 58.613 50.000 29.54 13.30 35.95 3.16
257 258 1.387119 AAGGAAGGAGCTCCCCAATT 58.613 50.000 29.54 16.90 35.95 2.32
258 259 1.387119 AGGAAGGAGCTCCCCAATTT 58.613 50.000 29.54 16.50 35.95 1.82
259 260 1.718801 AGGAAGGAGCTCCCCAATTTT 59.281 47.619 29.54 15.72 35.95 1.82
260 261 2.103373 GGAAGGAGCTCCCCAATTTTC 58.897 52.381 29.54 22.65 36.42 2.29
261 262 2.291865 GGAAGGAGCTCCCCAATTTTCT 60.292 50.000 29.54 4.11 36.42 2.52
262 263 2.816777 AGGAGCTCCCCAATTTTCTC 57.183 50.000 29.54 0.00 36.42 2.87
263 264 1.995542 AGGAGCTCCCCAATTTTCTCA 59.004 47.619 29.54 0.00 36.42 3.27
264 265 2.095461 GGAGCTCCCCAATTTTCTCAC 58.905 52.381 23.19 0.00 0.00 3.51
265 266 2.555227 GGAGCTCCCCAATTTTCTCACA 60.555 50.000 23.19 0.00 0.00 3.58
266 267 3.359950 GAGCTCCCCAATTTTCTCACAT 58.640 45.455 0.87 0.00 0.00 3.21
267 268 3.359950 AGCTCCCCAATTTTCTCACATC 58.640 45.455 0.00 0.00 0.00 3.06
268 269 2.428530 GCTCCCCAATTTTCTCACATCC 59.571 50.000 0.00 0.00 0.00 3.51
269 270 3.879321 GCTCCCCAATTTTCTCACATCCT 60.879 47.826 0.00 0.00 0.00 3.24
270 271 3.950395 CTCCCCAATTTTCTCACATCCTC 59.050 47.826 0.00 0.00 0.00 3.71
271 272 3.026694 CCCCAATTTTCTCACATCCTCC 58.973 50.000 0.00 0.00 0.00 4.30
272 273 3.564133 CCCCAATTTTCTCACATCCTCCA 60.564 47.826 0.00 0.00 0.00 3.86
273 274 4.284178 CCCAATTTTCTCACATCCTCCAT 58.716 43.478 0.00 0.00 0.00 3.41
274 275 4.713321 CCCAATTTTCTCACATCCTCCATT 59.287 41.667 0.00 0.00 0.00 3.16
275 276 5.163478 CCCAATTTTCTCACATCCTCCATTC 60.163 44.000 0.00 0.00 0.00 2.67
276 277 5.449588 CCAATTTTCTCACATCCTCCATTCG 60.450 44.000 0.00 0.00 0.00 3.34
277 278 3.981071 TTTCTCACATCCTCCATTCGT 57.019 42.857 0.00 0.00 0.00 3.85
278 279 3.981071 TTCTCACATCCTCCATTCGTT 57.019 42.857 0.00 0.00 0.00 3.85
279 280 3.981071 TCTCACATCCTCCATTCGTTT 57.019 42.857 0.00 0.00 0.00 3.60
280 281 4.286297 TCTCACATCCTCCATTCGTTTT 57.714 40.909 0.00 0.00 0.00 2.43
281 282 4.253685 TCTCACATCCTCCATTCGTTTTC 58.746 43.478 0.00 0.00 0.00 2.29
282 283 4.020218 TCTCACATCCTCCATTCGTTTTCT 60.020 41.667 0.00 0.00 0.00 2.52
283 284 4.253685 TCACATCCTCCATTCGTTTTCTC 58.746 43.478 0.00 0.00 0.00 2.87
284 285 4.020218 TCACATCCTCCATTCGTTTTCTCT 60.020 41.667 0.00 0.00 0.00 3.10
285 286 4.697352 CACATCCTCCATTCGTTTTCTCTT 59.303 41.667 0.00 0.00 0.00 2.85
286 287 4.697352 ACATCCTCCATTCGTTTTCTCTTG 59.303 41.667 0.00 0.00 0.00 3.02
287 288 4.351874 TCCTCCATTCGTTTTCTCTTGT 57.648 40.909 0.00 0.00 0.00 3.16
288 289 4.065088 TCCTCCATTCGTTTTCTCTTGTG 58.935 43.478 0.00 0.00 0.00 3.33
289 290 3.815401 CCTCCATTCGTTTTCTCTTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
290 291 4.275936 CCTCCATTCGTTTTCTCTTGTGTT 59.724 41.667 0.00 0.00 0.00 3.32
291 292 5.168526 TCCATTCGTTTTCTCTTGTGTTG 57.831 39.130 0.00 0.00 0.00 3.33
292 293 4.878971 TCCATTCGTTTTCTCTTGTGTTGA 59.121 37.500 0.00 0.00 0.00 3.18
293 294 5.007626 TCCATTCGTTTTCTCTTGTGTTGAG 59.992 40.000 0.00 0.00 0.00 3.02
294 295 4.875544 TTCGTTTTCTCTTGTGTTGAGG 57.124 40.909 0.00 0.00 32.78 3.86
295 296 2.612212 TCGTTTTCTCTTGTGTTGAGGC 59.388 45.455 0.00 0.00 32.78 4.70
296 297 2.614057 CGTTTTCTCTTGTGTTGAGGCT 59.386 45.455 0.00 0.00 32.78 4.58
297 298 3.303395 CGTTTTCTCTTGTGTTGAGGCTC 60.303 47.826 7.79 7.79 32.78 4.70
298 299 3.845781 TTTCTCTTGTGTTGAGGCTCT 57.154 42.857 16.72 0.00 32.78 4.09
299 300 3.393089 TTCTCTTGTGTTGAGGCTCTC 57.607 47.619 16.72 9.46 32.78 3.20
300 301 2.319844 TCTCTTGTGTTGAGGCTCTCA 58.680 47.619 16.72 11.96 38.87 3.27
301 302 2.298446 TCTCTTGTGTTGAGGCTCTCAG 59.702 50.000 16.72 4.30 41.75 3.35
302 303 1.155042 CTTGTGTTGAGGCTCTCAGC 58.845 55.000 16.72 10.64 41.75 4.26
311 312 4.908790 GCTCTCAGCCTCTCACAC 57.091 61.111 0.00 0.00 34.48 3.82
312 313 1.217779 GCTCTCAGCCTCTCACACC 59.782 63.158 0.00 0.00 34.48 4.16
313 314 1.257055 GCTCTCAGCCTCTCACACCT 61.257 60.000 0.00 0.00 34.48 4.00
314 315 1.957591 GCTCTCAGCCTCTCACACCTA 60.958 57.143 0.00 0.00 34.48 3.08
315 316 2.665165 CTCTCAGCCTCTCACACCTAT 58.335 52.381 0.00 0.00 0.00 2.57
316 317 2.361757 CTCTCAGCCTCTCACACCTATG 59.638 54.545 0.00 0.00 0.00 2.23
317 318 2.106566 CTCAGCCTCTCACACCTATGT 58.893 52.381 0.00 0.00 40.80 2.29
318 319 2.499289 CTCAGCCTCTCACACCTATGTT 59.501 50.000 0.00 0.00 36.72 2.71
345 346 1.963515 ACAATGCTTTCACACCCTTCC 59.036 47.619 0.00 0.00 0.00 3.46
346 347 2.242043 CAATGCTTTCACACCCTTCCT 58.758 47.619 0.00 0.00 0.00 3.36
347 348 2.629617 CAATGCTTTCACACCCTTCCTT 59.370 45.455 0.00 0.00 0.00 3.36
348 349 1.981256 TGCTTTCACACCCTTCCTTC 58.019 50.000 0.00 0.00 0.00 3.46
349 350 1.248486 GCTTTCACACCCTTCCTTCC 58.752 55.000 0.00 0.00 0.00 3.46
350 351 1.911057 CTTTCACACCCTTCCTTCCC 58.089 55.000 0.00 0.00 0.00 3.97
351 352 1.144913 CTTTCACACCCTTCCTTCCCA 59.855 52.381 0.00 0.00 0.00 4.37
352 353 0.771127 TTCACACCCTTCCTTCCCAG 59.229 55.000 0.00 0.00 0.00 4.45
353 354 0.401395 TCACACCCTTCCTTCCCAGT 60.401 55.000 0.00 0.00 0.00 4.00
362 363 3.555966 CTTCCTTCCCAGTTTTCACACT 58.444 45.455 0.00 0.00 0.00 3.55
371 372 1.040339 GTTTTCACACTGTGGGGCCA 61.040 55.000 10.64 0.00 33.87 5.36
403 411 2.260869 CCCTGCCCTGTTTCACACG 61.261 63.158 0.00 0.00 0.00 4.49
405 413 2.904866 TGCCCTGTTTCACACGGC 60.905 61.111 9.28 9.28 46.20 5.68
445 453 4.127744 CCACCCACGGCCCATCAT 62.128 66.667 0.00 0.00 0.00 2.45
446 454 2.044053 CACCCACGGCCCATCATT 60.044 61.111 0.00 0.00 0.00 2.57
454 462 0.816825 CGGCCCATCATTCAGACAGG 60.817 60.000 0.00 0.00 0.00 4.00
455 463 0.466922 GGCCCATCATTCAGACAGGG 60.467 60.000 0.00 0.00 44.16 4.45
459 476 1.482182 CCATCATTCAGACAGGGACGA 59.518 52.381 0.00 0.00 0.00 4.20
527 561 1.903783 AAAATTCGAACCGTCCCGCG 61.904 55.000 0.00 0.00 40.95 6.46
1241 1772 4.436998 GGAGGACGAGGTGTGCGG 62.437 72.222 0.00 0.00 44.84 5.69
1518 2049 1.056660 GGATCTGATCCCCGGCTTTA 58.943 55.000 23.45 0.00 43.88 1.85
1552 2083 1.135141 TGTTGAGCCTTGTGTGTTTGC 60.135 47.619 0.00 0.00 0.00 3.68
1682 2213 2.041265 ATCCACTCCGCCCCTTCT 59.959 61.111 0.00 0.00 0.00 2.85
1738 2269 1.251251 ACTTGGGTTCTGATGCTTGC 58.749 50.000 0.00 0.00 0.00 4.01
1755 2286 2.668280 GCCTCGTTCAACGGAGCAC 61.668 63.158 10.69 0.00 42.81 4.40
1803 2339 8.801299 TCATCAAAATAACAGTAATTGCTCCAA 58.199 29.630 0.00 0.00 0.00 3.53
1837 2373 1.639722 TACTGCTAAGGCCTGACACA 58.360 50.000 5.69 1.33 37.74 3.72
1867 2403 6.705863 AATGCTCCTGATAGGATTTGAAAC 57.294 37.500 0.00 0.00 44.81 2.78
1880 2416 4.394920 GGATTTGAAACGGATGCACTCTAA 59.605 41.667 0.00 0.00 0.00 2.10
1881 2417 5.106317 GGATTTGAAACGGATGCACTCTAAA 60.106 40.000 0.00 0.00 0.00 1.85
1882 2418 5.759506 TTTGAAACGGATGCACTCTAAAA 57.240 34.783 0.00 0.00 0.00 1.52
1938 2607 9.253832 TCCATTTCTGGCATTAAGATTTTTCTA 57.746 29.630 0.00 0.00 42.80 2.10
1971 2641 8.391106 CAGTGGATACTCTAAATGTTGCTTAAC 58.609 37.037 0.00 0.00 38.65 2.01
1978 2648 6.430000 ACTCTAAATGTTGCTTAACGTGGATT 59.570 34.615 0.00 0.00 0.00 3.01
2080 2750 4.270834 ACCAGATAGTCGAGCTCTTGTAA 58.729 43.478 12.85 0.00 0.00 2.41
2086 2757 9.302345 CAGATAGTCGAGCTCTTGTAATTTTAA 57.698 33.333 12.85 0.00 0.00 1.52
2090 2761 7.965045 AGTCGAGCTCTTGTAATTTTAACATC 58.035 34.615 12.85 0.00 0.00 3.06
2182 2853 4.556699 GCTGATTACATTGGCCGAATAACC 60.557 45.833 0.00 0.00 0.00 2.85
2232 2903 2.805657 GCTACTTCACCTGTCGTTGGTT 60.806 50.000 0.00 0.00 35.28 3.67
2267 2938 1.730064 ACACGGTGCGTATTGATTGAC 59.270 47.619 8.30 0.00 38.32 3.18
2273 2944 3.108144 GTGCGTATTGATTGACCATTGC 58.892 45.455 0.00 0.00 0.00 3.56
2314 2985 6.701340 TGTACTAATGCCTGGATAGCTTATG 58.299 40.000 0.00 0.00 0.00 1.90
2316 2987 6.439636 ACTAATGCCTGGATAGCTTATGAA 57.560 37.500 0.00 0.00 0.00 2.57
2369 3040 4.090354 GCCAAATTTGTCAATGATCACACG 59.910 41.667 16.73 0.00 0.00 4.49
2499 3170 5.925969 CCTGTTCAAAACTTTGTCAAGTGTT 59.074 36.000 2.30 1.66 42.89 3.32
2502 3173 8.288217 TGTTCAAAACTTTGTCAAGTGTTAAC 57.712 30.769 0.00 0.00 42.89 2.01
2543 3214 4.808414 TCTCACTGTATGTTCTCCTTGG 57.192 45.455 0.00 0.00 0.00 3.61
2708 3427 0.901114 TGCTGCTGCATGTTTCCCAT 60.901 50.000 14.93 0.00 45.31 4.00
2710 3429 1.477700 GCTGCTGCATGTTTCCCATAA 59.522 47.619 11.11 0.00 39.41 1.90
2712 3431 3.713288 CTGCTGCATGTTTCCCATAATG 58.287 45.455 1.31 0.00 30.71 1.90
2769 3488 2.708216 CAAGGGGTGCTTTGGTTTTT 57.292 45.000 0.00 0.00 0.00 1.94
2778 3497 4.938832 GGTGCTTTGGTTTTTGGTTAACTT 59.061 37.500 5.42 0.00 0.00 2.66
2779 3498 5.163804 GGTGCTTTGGTTTTTGGTTAACTTG 60.164 40.000 5.42 0.00 0.00 3.16
2793 3512 7.354751 TGGTTAACTTGTAAGCCTTGAAAAT 57.645 32.000 5.42 0.00 0.00 1.82
2868 3587 5.652014 TGGTTCTGAGTTTTGTCACTTGAAT 59.348 36.000 0.00 0.00 0.00 2.57
2869 3588 5.973565 GGTTCTGAGTTTTGTCACTTGAATG 59.026 40.000 0.00 0.00 0.00 2.67
2874 3593 7.498900 TCTGAGTTTTGTCACTTGAATGTGTAT 59.501 33.333 0.00 0.00 38.90 2.29
2875 3594 7.416817 TGAGTTTTGTCACTTGAATGTGTATG 58.583 34.615 0.00 0.00 38.90 2.39
2876 3595 7.066887 TGAGTTTTGTCACTTGAATGTGTATGT 59.933 33.333 0.00 0.00 38.90 2.29
3205 3931 2.039746 CCTGTATTCTGGTTGTGGTGGA 59.960 50.000 0.00 0.00 0.00 4.02
3319 4045 6.545504 TTTGTCATTTCTCAGCACTAACTC 57.454 37.500 0.00 0.00 0.00 3.01
3408 4134 0.890683 CCATCCCAAAACAGAGGTGC 59.109 55.000 0.00 0.00 0.00 5.01
3536 4262 2.224992 TGCACTTCTTAAGGAATGGGCA 60.225 45.455 1.85 6.69 38.31 5.36
3604 4330 1.349357 ACCTGTTGAGGAAGAGGAAGC 59.651 52.381 5.07 0.00 44.02 3.86
3671 4397 0.471617 AGATCTGCTATGGTGGCACC 59.528 55.000 29.75 29.75 39.22 5.01
3749 4476 5.123344 CCCTTGTGGTAGTGTTAATACTTGC 59.877 44.000 10.35 4.45 32.19 4.01
4009 4736 2.154462 CCCAGCCTGTGAGTAACTTTG 58.846 52.381 0.00 0.00 0.00 2.77
4010 4737 2.487265 CCCAGCCTGTGAGTAACTTTGT 60.487 50.000 0.00 0.00 0.00 2.83
4153 4880 3.742369 TCAACCGATTTAGAAACCGTGAC 59.258 43.478 0.00 0.00 0.00 3.67
4162 4889 2.021457 AGAAACCGTGACAACCCTTTG 58.979 47.619 0.00 0.00 38.83 2.77
4168 4895 1.602377 CGTGACAACCCTTTGGAAGAC 59.398 52.381 0.00 0.00 37.00 3.01
4213 4940 9.694137 GTTACCTATATGGACATTGTCTCTTAC 57.306 37.037 16.02 0.37 39.71 2.34
4282 5009 3.370840 TTTGCTGATGGCTATCTTGGT 57.629 42.857 11.68 0.00 42.39 3.67
4425 5152 5.262588 ACCATGGTTTGTTCTGTTTCTTC 57.737 39.130 13.00 0.00 0.00 2.87
4434 5161 7.170320 GGTTTGTTCTGTTTCTTCGTCACTATA 59.830 37.037 0.00 0.00 0.00 1.31
4470 5197 2.119801 ATGTTGCCTCATGGAGTGAC 57.880 50.000 0.00 0.00 34.57 3.67
4471 5198 0.764271 TGTTGCCTCATGGAGTGACA 59.236 50.000 0.00 0.00 34.57 3.58
4530 5257 5.611408 TCCTCTCCCTACTCATGATGTAGTA 59.389 44.000 21.01 10.36 36.56 1.82
4947 5675 1.403647 GCATTGTAAACGGCCTTTCCC 60.404 52.381 0.00 0.00 0.00 3.97
4969 5697 8.940397 TCCCTTTTCATTTCAGATCTTAGTTT 57.060 30.769 0.00 0.00 0.00 2.66
5319 6067 3.056821 GGCAAACCTTTGGTACAGATTCC 60.057 47.826 0.00 0.00 42.39 3.01
5372 6122 5.309323 GCTGGTGCAAATTCTGTTACATA 57.691 39.130 0.00 0.00 39.41 2.29
5410 6160 7.076446 ACCTGAACATAGGAGTATAGGACAAT 58.924 38.462 0.00 0.00 40.42 2.71
5543 6339 5.444663 AGTGCCTTTGAATGTCTTCTTTC 57.555 39.130 0.00 0.00 32.29 2.62
5546 6342 5.860716 GTGCCTTTGAATGTCTTCTTTCATC 59.139 40.000 0.00 0.00 37.49 2.92
5573 6380 7.180229 TCTCCATTTCTCCAACTGTACATCTTA 59.820 37.037 0.00 0.00 0.00 2.10
5590 6399 7.076842 ACATCTTATGTTACTCACACAATGC 57.923 36.000 0.00 0.00 41.63 3.56
5615 6424 1.269517 TGATGTTTTTGCAGGCCGTTC 60.270 47.619 0.00 0.00 0.00 3.95
5672 6481 1.226831 GACTAGAGCAGAGCCGCAC 60.227 63.158 0.00 0.00 0.00 5.34
5691 6500 0.030638 CAACCAGGTCAGTTTTGGCG 59.969 55.000 0.00 0.00 35.35 5.69
5705 6514 2.125952 GGCGCAACTTCCAATGCC 60.126 61.111 10.83 0.00 39.39 4.40
5709 6518 1.851021 CGCAACTTCCAATGCCGTCA 61.851 55.000 0.00 0.00 39.39 4.35
5752 6569 2.742774 CTTAGTTTGTTTGTGCTGCCC 58.257 47.619 0.00 0.00 0.00 5.36
5904 6721 9.276397 GTTGAAAATTGAAAACTGAAACCATTG 57.724 29.630 0.00 0.00 0.00 2.82
5966 6783 1.090052 GCAGGTACATCCAAGTCGGC 61.090 60.000 0.00 0.00 39.02 5.54
5991 6808 4.196778 TGGCGGTCCCTGTTGCAA 62.197 61.111 0.00 0.00 0.00 4.08
6029 6846 3.480133 GGCCGAGCATACCAGGGT 61.480 66.667 0.00 0.00 0.00 4.34
6040 6857 0.118346 TACCAGGGTGAGGTGGATGT 59.882 55.000 0.06 0.00 40.26 3.06
6056 6873 0.250467 ATGTGGGGTATGATGCGCTC 60.250 55.000 9.73 4.27 0.00 5.03
6065 6882 3.001736 GGTATGATGCGCTCTTTGTTCTC 59.998 47.826 9.73 0.00 0.00 2.87
6089 6906 0.606401 ACAGCTTCACCAACATCGGG 60.606 55.000 0.00 0.00 0.00 5.14
6157 6974 2.553079 GAGGTTGTCGAGCAGTAGAG 57.447 55.000 0.00 0.00 0.00 2.43
6170 6987 2.627699 GCAGTAGAGCAGAGCCTATCTT 59.372 50.000 0.00 0.00 35.47 2.40
6171 6988 3.305335 GCAGTAGAGCAGAGCCTATCTTC 60.305 52.174 0.00 0.00 35.47 2.87
6172 6989 4.144297 CAGTAGAGCAGAGCCTATCTTCT 58.856 47.826 0.00 0.00 35.47 2.85
6261 7079 3.745975 TGTAAGGATTGCTCGAGTTGTTG 59.254 43.478 15.13 0.00 0.00 3.33
6266 7084 0.657312 TTGCTCGAGTTGTTGCTGTG 59.343 50.000 15.13 0.00 0.00 3.66
6271 7089 1.006086 CGAGTTGTTGCTGTGTGTCA 58.994 50.000 0.00 0.00 0.00 3.58
6417 7235 3.689649 GTCTGGTGTATGTGGGATTTGTC 59.310 47.826 0.00 0.00 0.00 3.18
6418 7236 3.587061 TCTGGTGTATGTGGGATTTGTCT 59.413 43.478 0.00 0.00 0.00 3.41
6419 7237 4.780554 TCTGGTGTATGTGGGATTTGTCTA 59.219 41.667 0.00 0.00 0.00 2.59
6420 7238 5.428457 TCTGGTGTATGTGGGATTTGTCTAT 59.572 40.000 0.00 0.00 0.00 1.98
6421 7239 6.069673 TCTGGTGTATGTGGGATTTGTCTATT 60.070 38.462 0.00 0.00 0.00 1.73
6422 7240 6.489603 TGGTGTATGTGGGATTTGTCTATTT 58.510 36.000 0.00 0.00 0.00 1.40
6423 7241 6.376864 TGGTGTATGTGGGATTTGTCTATTTG 59.623 38.462 0.00 0.00 0.00 2.32
6424 7242 6.265577 GTGTATGTGGGATTTGTCTATTTGC 58.734 40.000 0.00 0.00 0.00 3.68
6425 7243 6.095440 GTGTATGTGGGATTTGTCTATTTGCT 59.905 38.462 0.00 0.00 0.00 3.91
6426 7244 5.587388 ATGTGGGATTTGTCTATTTGCTG 57.413 39.130 0.00 0.00 0.00 4.41
6427 7245 3.763360 TGTGGGATTTGTCTATTTGCTGG 59.237 43.478 0.00 0.00 0.00 4.85
6428 7246 4.016444 GTGGGATTTGTCTATTTGCTGGA 58.984 43.478 0.00 0.00 0.00 3.86
6429 7247 4.096984 GTGGGATTTGTCTATTTGCTGGAG 59.903 45.833 0.00 0.00 0.00 3.86
6434 7252 7.285401 GGGATTTGTCTATTTGCTGGAGATTTA 59.715 37.037 0.00 0.00 0.00 1.40
6445 7263 4.080356 TGCTGGAGATTTACTGGCAGTTAT 60.080 41.667 27.24 18.89 0.00 1.89
6451 7269 8.052748 TGGAGATTTACTGGCAGTTATGTTATT 58.947 33.333 27.24 4.45 0.00 1.40
6494 7324 4.296912 TGGGCATGGAATAATGGTTGATT 58.703 39.130 0.00 0.00 0.00 2.57
6498 7328 6.719370 GGGCATGGAATAATGGTTGATTAGTA 59.281 38.462 0.00 0.00 29.78 1.82
6499 7329 7.309194 GGGCATGGAATAATGGTTGATTAGTAC 60.309 40.741 0.00 0.00 29.78 2.73
6500 7330 7.448469 GGCATGGAATAATGGTTGATTAGTACT 59.552 37.037 0.00 0.00 28.37 2.73
6501 7331 8.507249 GCATGGAATAATGGTTGATTAGTACTC 58.493 37.037 0.00 0.00 28.37 2.59
6502 7332 9.003658 CATGGAATAATGGTTGATTAGTACTCC 57.996 37.037 0.00 0.00 28.37 3.85
6503 7333 7.514721 TGGAATAATGGTTGATTAGTACTCCC 58.485 38.462 0.00 0.00 28.37 4.30
6504 7334 7.349859 TGGAATAATGGTTGATTAGTACTCCCT 59.650 37.037 0.00 0.00 28.37 4.20
6505 7335 8.218488 GGAATAATGGTTGATTAGTACTCCCTT 58.782 37.037 0.00 0.00 29.78 3.95
6506 7336 9.628500 GAATAATGGTTGATTAGTACTCCCTTT 57.372 33.333 0.00 0.00 29.78 3.11
6507 7337 8.980481 ATAATGGTTGATTAGTACTCCCTTTG 57.020 34.615 0.00 0.00 29.78 2.77
6508 7338 4.585879 TGGTTGATTAGTACTCCCTTTGC 58.414 43.478 0.00 0.00 0.00 3.68
6509 7339 4.042311 TGGTTGATTAGTACTCCCTTTGCA 59.958 41.667 0.00 0.00 0.00 4.08
6510 7340 5.007682 GGTTGATTAGTACTCCCTTTGCAA 58.992 41.667 0.00 0.00 0.00 4.08
6511 7341 5.475564 GGTTGATTAGTACTCCCTTTGCAAA 59.524 40.000 12.14 12.14 0.00 3.68
6512 7342 6.349363 GGTTGATTAGTACTCCCTTTGCAAAG 60.349 42.308 28.69 28.69 35.79 2.77
6513 7343 6.121776 TGATTAGTACTCCCTTTGCAAAGA 57.878 37.500 35.25 18.82 38.28 2.52
6514 7344 6.539173 TGATTAGTACTCCCTTTGCAAAGAA 58.461 36.000 35.25 22.77 38.28 2.52
6515 7345 7.001674 TGATTAGTACTCCCTTTGCAAAGAAA 58.998 34.615 35.25 22.46 38.28 2.52
6516 7346 6.628919 TTAGTACTCCCTTTGCAAAGAAAC 57.371 37.500 35.25 23.72 38.28 2.78
6517 7347 4.532834 AGTACTCCCTTTGCAAAGAAACA 58.467 39.130 35.25 17.01 38.28 2.83
6518 7348 5.140454 AGTACTCCCTTTGCAAAGAAACAT 58.860 37.500 35.25 20.07 38.28 2.71
6519 7349 6.303839 AGTACTCCCTTTGCAAAGAAACATA 58.696 36.000 35.25 19.19 38.28 2.29
6520 7350 6.775629 AGTACTCCCTTTGCAAAGAAACATAA 59.224 34.615 35.25 14.57 38.28 1.90
6521 7351 6.478512 ACTCCCTTTGCAAAGAAACATAAA 57.521 33.333 35.25 13.05 38.28 1.40
6522 7352 6.883744 ACTCCCTTTGCAAAGAAACATAAAA 58.116 32.000 35.25 11.75 38.28 1.52
6523 7353 6.986231 ACTCCCTTTGCAAAGAAACATAAAAG 59.014 34.615 35.25 20.06 38.28 2.27
6524 7354 6.883744 TCCCTTTGCAAAGAAACATAAAAGT 58.116 32.000 35.25 0.00 38.28 2.66
6525 7355 6.760770 TCCCTTTGCAAAGAAACATAAAAGTG 59.239 34.615 35.25 16.21 38.28 3.16
6526 7356 6.538381 CCCTTTGCAAAGAAACATAAAAGTGT 59.462 34.615 35.25 0.00 38.28 3.55
6527 7357 7.065683 CCCTTTGCAAAGAAACATAAAAGTGTT 59.934 33.333 35.25 0.00 38.28 3.32
6592 7422 6.938698 TGGAGGGAGTACAAAGTTAATGTA 57.061 37.500 0.00 0.00 32.27 2.29
6596 7426 5.191124 AGGGAGTACAAAGTTAATGTAGGGG 59.809 44.000 0.00 0.00 34.14 4.79
6597 7427 5.190330 GGGAGTACAAAGTTAATGTAGGGGA 59.810 44.000 0.00 0.00 34.14 4.81
6599 7429 7.344134 GGAGTACAAAGTTAATGTAGGGGATT 58.656 38.462 0.00 0.00 34.14 3.01
6600 7430 7.498239 GGAGTACAAAGTTAATGTAGGGGATTC 59.502 40.741 0.00 0.00 34.14 2.52
6603 7433 6.548321 ACAAAGTTAATGTAGGGGATTCACA 58.452 36.000 0.00 0.00 0.00 3.58
6604 7434 6.433093 ACAAAGTTAATGTAGGGGATTCACAC 59.567 38.462 0.00 0.00 0.00 3.82
6605 7435 5.772393 AGTTAATGTAGGGGATTCACACA 57.228 39.130 0.00 0.00 0.00 3.72
6607 7437 6.122277 AGTTAATGTAGGGGATTCACACATG 58.878 40.000 0.00 0.00 30.55 3.21
6608 7438 4.591321 AATGTAGGGGATTCACACATGT 57.409 40.909 0.00 0.00 30.55 3.21
6609 7439 4.591321 ATGTAGGGGATTCACACATGTT 57.409 40.909 0.00 0.00 0.00 2.71
6610 7440 3.684908 TGTAGGGGATTCACACATGTTG 58.315 45.455 0.00 0.00 0.00 3.33
6614 7444 2.428171 GGGGATTCACACATGTTGATGG 59.572 50.000 0.00 0.00 33.39 3.51
6615 7445 2.428171 GGGATTCACACATGTTGATGGG 59.572 50.000 0.00 0.00 39.14 4.00
6622 7452 3.015934 CACATGTTGATGGGTGTGTTG 57.984 47.619 0.00 0.00 37.70 3.33
6624 7454 3.567585 CACATGTTGATGGGTGTGTTGTA 59.432 43.478 0.00 0.00 37.70 2.41
6625 7455 4.037327 CACATGTTGATGGGTGTGTTGTAA 59.963 41.667 0.00 0.00 37.70 2.41
6627 7457 5.048083 ACATGTTGATGGGTGTGTTGTAATC 60.048 40.000 0.00 0.00 33.39 1.75
6628 7458 3.823873 TGTTGATGGGTGTGTTGTAATCC 59.176 43.478 0.00 0.00 0.00 3.01
6629 7459 4.079253 GTTGATGGGTGTGTTGTAATCCT 58.921 43.478 0.00 0.00 0.00 3.24
6631 7461 4.735369 TGATGGGTGTGTTGTAATCCTTT 58.265 39.130 0.00 0.00 0.00 3.11
6632 7462 5.144100 TGATGGGTGTGTTGTAATCCTTTT 58.856 37.500 0.00 0.00 0.00 2.27
6633 7463 5.242838 TGATGGGTGTGTTGTAATCCTTTTC 59.757 40.000 0.00 0.00 0.00 2.29
6635 7465 4.582656 TGGGTGTGTTGTAATCCTTTTCAG 59.417 41.667 0.00 0.00 0.00 3.02
6636 7466 4.546570 GGTGTGTTGTAATCCTTTTCAGC 58.453 43.478 0.00 0.00 0.00 4.26
6637 7467 4.278419 GGTGTGTTGTAATCCTTTTCAGCT 59.722 41.667 0.00 0.00 0.00 4.24
6638 7468 5.215160 GTGTGTTGTAATCCTTTTCAGCTG 58.785 41.667 7.63 7.63 0.00 4.24
6639 7469 4.229876 GTGTTGTAATCCTTTTCAGCTGC 58.770 43.478 9.47 0.00 0.00 5.25
6640 7470 3.888323 TGTTGTAATCCTTTTCAGCTGCA 59.112 39.130 9.47 0.00 0.00 4.41
6641 7471 4.229876 GTTGTAATCCTTTTCAGCTGCAC 58.770 43.478 9.47 0.00 0.00 4.57
6642 7472 3.754965 TGTAATCCTTTTCAGCTGCACT 58.245 40.909 9.47 0.00 0.00 4.40
6643 7473 4.144297 TGTAATCCTTTTCAGCTGCACTT 58.856 39.130 9.47 0.00 0.00 3.16
6655 7485 4.393990 TCAGCTGCACTTAGTCAAATCATG 59.606 41.667 9.47 0.00 0.00 3.07
6759 7600 4.682563 AGAGAGAAAACATCAGAGGGAGA 58.317 43.478 0.00 0.00 0.00 3.71
6760 7601 4.711355 AGAGAGAAAACATCAGAGGGAGAG 59.289 45.833 0.00 0.00 0.00 3.20
6761 7602 4.682563 AGAGAAAACATCAGAGGGAGAGA 58.317 43.478 0.00 0.00 0.00 3.10
6762 7603 5.090139 AGAGAAAACATCAGAGGGAGAGAA 58.910 41.667 0.00 0.00 0.00 2.87
6763 7604 5.545723 AGAGAAAACATCAGAGGGAGAGAAA 59.454 40.000 0.00 0.00 0.00 2.52
6765 7606 6.000840 AGAAAACATCAGAGGGAGAGAAAAC 58.999 40.000 0.00 0.00 0.00 2.43
6766 7607 4.982241 AACATCAGAGGGAGAGAAAACA 57.018 40.909 0.00 0.00 0.00 2.83
6767 7608 5.511386 AACATCAGAGGGAGAGAAAACAT 57.489 39.130 0.00 0.00 0.00 2.71
6769 7610 5.885465 ACATCAGAGGGAGAGAAAACATTT 58.115 37.500 0.00 0.00 0.00 2.32
6770 7611 7.020827 ACATCAGAGGGAGAGAAAACATTTA 57.979 36.000 0.00 0.00 0.00 1.40
6771 7612 7.108847 ACATCAGAGGGAGAGAAAACATTTAG 58.891 38.462 0.00 0.00 0.00 1.85
6772 7613 5.491982 TCAGAGGGAGAGAAAACATTTAGC 58.508 41.667 0.00 0.00 0.00 3.09
6773 7614 5.013079 TCAGAGGGAGAGAAAACATTTAGCA 59.987 40.000 0.00 0.00 0.00 3.49
6774 7615 5.707298 CAGAGGGAGAGAAAACATTTAGCAA 59.293 40.000 0.00 0.00 0.00 3.91
6775 7616 6.207417 CAGAGGGAGAGAAAACATTTAGCAAA 59.793 38.462 0.00 0.00 0.00 3.68
6777 7618 7.452813 AGAGGGAGAGAAAACATTTAGCAAATT 59.547 33.333 0.00 0.00 0.00 1.82
6830 7703 2.880963 AAATGGGAAAACACACCACG 57.119 45.000 0.00 0.00 37.05 4.94
6833 7706 0.748729 TGGGAAAACACACCACGGTC 60.749 55.000 0.00 0.00 0.00 4.79
6840 7713 0.896940 ACACACCACGGTCGATAGGT 60.897 55.000 0.00 0.00 33.91 3.08
6842 7715 0.609957 ACACCACGGTCGATAGGTCA 60.610 55.000 0.00 0.00 30.44 4.02
6869 7744 4.578105 GCCTCTTGCAGATAAAGCATAACT 59.422 41.667 0.00 0.00 42.33 2.24
6877 7752 5.049129 GCAGATAAAGCATAACTGTGATCCC 60.049 44.000 8.08 0.00 0.00 3.85
6881 7756 1.492176 AGCATAACTGTGATCCCAGGG 59.508 52.381 10.11 0.00 36.75 4.45
6884 7759 1.580059 TAACTGTGATCCCAGGGGTC 58.420 55.000 12.63 12.63 36.75 4.46
6888 7763 1.686110 GTGATCCCAGGGGTCGTCT 60.686 63.158 14.66 0.00 36.47 4.18
6892 7767 0.688087 ATCCCAGGGGTCGTCTTCTC 60.688 60.000 5.33 0.00 36.47 2.87
6893 7768 2.359967 CCCAGGGGTCGTCTTCTCC 61.360 68.421 0.00 0.00 0.00 3.71
6894 7769 2.711922 CCAGGGGTCGTCTTCTCCG 61.712 68.421 0.00 0.00 0.00 4.63
6895 7770 2.362632 AGGGGTCGTCTTCTCCGG 60.363 66.667 0.00 0.00 0.00 5.14
6896 7771 4.144703 GGGGTCGTCTTCTCCGGC 62.145 72.222 0.00 0.00 0.00 6.13
6906 7781 0.391130 CTTCTCCGGCGAATCAACCA 60.391 55.000 9.30 0.00 0.00 3.67
6910 7785 1.472480 CTCCGGCGAATCAACCATTTT 59.528 47.619 9.30 0.00 0.00 1.82
6914 7789 4.158764 TCCGGCGAATCAACCATTTTAATT 59.841 37.500 9.30 0.00 0.00 1.40
6915 7790 4.267452 CCGGCGAATCAACCATTTTAATTG 59.733 41.667 9.30 0.00 0.00 2.32
6935 7810 1.022735 GGAACTCTATCGCCGAGTCA 58.977 55.000 0.00 0.00 40.65 3.41
6937 7812 2.350964 GGAACTCTATCGCCGAGTCATC 60.351 54.545 0.00 0.00 40.65 2.92
7001 7877 5.414454 TGTGTACAGCAATTATGAAGGGAAC 59.586 40.000 0.00 0.00 0.00 3.62
7059 7935 6.019479 TGCAAAACGGTTAATAAAACTTGCAG 60.019 34.615 16.78 0.00 41.04 4.41
7075 7951 6.254281 ACTTGCAGAAAACCATACACATAC 57.746 37.500 0.00 0.00 0.00 2.39
7076 7952 6.003950 ACTTGCAGAAAACCATACACATACT 58.996 36.000 0.00 0.00 0.00 2.12
7078 7954 7.334421 ACTTGCAGAAAACCATACACATACTAG 59.666 37.037 0.00 0.00 0.00 2.57
7080 7956 7.842982 TGCAGAAAACCATACACATACTAGTA 58.157 34.615 4.77 4.77 0.00 1.82
7081 7957 7.979537 TGCAGAAAACCATACACATACTAGTAG 59.020 37.037 8.85 3.62 0.00 2.57
7082 7958 8.195436 GCAGAAAACCATACACATACTAGTAGA 58.805 37.037 8.85 0.00 0.00 2.59
7095 7981 9.900710 CACATACTAGTAGAAATCTGATGTACC 57.099 37.037 8.85 0.00 0.00 3.34
7106 7992 5.762179 ATCTGATGTACCAGGACAAAGAA 57.238 39.130 0.00 0.00 32.79 2.52
7107 7993 5.152623 TCTGATGTACCAGGACAAAGAAG 57.847 43.478 0.00 0.00 34.99 2.85
7142 8028 0.112412 TTTGCCCCTCAAACTCCTCC 59.888 55.000 0.00 0.00 39.58 4.30
7150 8036 0.114560 TCAAACTCCTCCGGGTCTCT 59.885 55.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.901552 AGTTCACGGACAAAATTCACAATT 58.098 33.333 0.00 0.00 0.00 2.32
3 4 5.514274 AGTTCACGGACAAAATTCACAAT 57.486 34.783 0.00 0.00 0.00 2.71
5 6 4.974368 AAGTTCACGGACAAAATTCACA 57.026 36.364 0.00 0.00 0.00 3.58
6 7 5.231357 GGAAAAGTTCACGGACAAAATTCAC 59.769 40.000 0.00 0.00 0.00 3.18
7 8 5.344884 GGAAAAGTTCACGGACAAAATTCA 58.655 37.500 0.00 0.00 0.00 2.57
8 9 4.743151 GGGAAAAGTTCACGGACAAAATTC 59.257 41.667 0.00 0.00 0.00 2.17
9 10 4.160626 TGGGAAAAGTTCACGGACAAAATT 59.839 37.500 0.00 0.00 35.25 1.82
10 11 3.702045 TGGGAAAAGTTCACGGACAAAAT 59.298 39.130 0.00 0.00 35.25 1.82
11 12 3.090037 TGGGAAAAGTTCACGGACAAAA 58.910 40.909 0.00 0.00 35.25 2.44
12 13 2.724454 TGGGAAAAGTTCACGGACAAA 58.276 42.857 0.00 0.00 35.25 2.83
13 14 2.421751 TGGGAAAAGTTCACGGACAA 57.578 45.000 0.00 0.00 35.25 3.18
14 15 2.421751 TTGGGAAAAGTTCACGGACA 57.578 45.000 0.00 0.00 35.25 4.02
15 16 4.202070 TGAATTTGGGAAAAGTTCACGGAC 60.202 41.667 0.00 0.00 35.25 4.79
16 17 3.954904 TGAATTTGGGAAAAGTTCACGGA 59.045 39.130 0.00 0.00 35.25 4.69
17 18 4.314740 TGAATTTGGGAAAAGTTCACGG 57.685 40.909 0.00 0.00 35.25 4.94
18 19 5.527951 TCATGAATTTGGGAAAAGTTCACG 58.472 37.500 0.00 0.00 35.25 4.35
19 20 7.381323 AGATCATGAATTTGGGAAAAGTTCAC 58.619 34.615 0.00 0.00 32.30 3.18
20 21 7.543359 AGATCATGAATTTGGGAAAAGTTCA 57.457 32.000 0.00 0.00 33.82 3.18
21 22 7.547019 GGAAGATCATGAATTTGGGAAAAGTTC 59.453 37.037 0.00 0.00 0.00 3.01
22 23 7.236225 AGGAAGATCATGAATTTGGGAAAAGTT 59.764 33.333 0.00 0.00 0.00 2.66
23 24 6.727697 AGGAAGATCATGAATTTGGGAAAAGT 59.272 34.615 0.00 0.00 0.00 2.66
24 25 7.179076 AGGAAGATCATGAATTTGGGAAAAG 57.821 36.000 0.00 0.00 0.00 2.27
25 26 7.557875 AAGGAAGATCATGAATTTGGGAAAA 57.442 32.000 0.00 0.00 0.00 2.29
26 27 7.557875 AAAGGAAGATCATGAATTTGGGAAA 57.442 32.000 0.00 0.00 0.00 3.13
27 28 7.235193 TGAAAAGGAAGATCATGAATTTGGGAA 59.765 33.333 0.00 0.00 0.00 3.97
28 29 6.725369 TGAAAAGGAAGATCATGAATTTGGGA 59.275 34.615 0.00 0.00 0.00 4.37
29 30 6.938507 TGAAAAGGAAGATCATGAATTTGGG 58.061 36.000 0.00 0.00 0.00 4.12
30 31 8.836268 TTTGAAAAGGAAGATCATGAATTTGG 57.164 30.769 0.00 0.00 0.00 3.28
35 36 9.701098 CAAGAATTTGAAAAGGAAGATCATGAA 57.299 29.630 0.00 0.00 36.36 2.57
36 37 9.081204 TCAAGAATTTGAAAAGGAAGATCATGA 57.919 29.630 0.00 0.00 40.26 3.07
81 82 9.719279 ACATTGACTAACGAAAATTTTAAACGA 57.281 25.926 15.03 0.83 0.00 3.85
86 87 9.160576 CGTGAACATTGACTAACGAAAATTTTA 57.839 29.630 2.75 0.00 33.03 1.52
87 88 7.911205 TCGTGAACATTGACTAACGAAAATTTT 59.089 29.630 2.28 2.28 37.14 1.82
88 89 7.411274 TCGTGAACATTGACTAACGAAAATTT 58.589 30.769 0.00 0.00 37.14 1.82
89 90 6.950545 TCGTGAACATTGACTAACGAAAATT 58.049 32.000 0.00 0.00 37.14 1.82
90 91 6.533819 TCGTGAACATTGACTAACGAAAAT 57.466 33.333 0.00 0.00 37.14 1.82
91 92 5.970140 TCGTGAACATTGACTAACGAAAA 57.030 34.783 0.00 0.00 37.14 2.29
92 93 5.970140 TTCGTGAACATTGACTAACGAAA 57.030 34.783 14.20 4.33 44.27 3.46
93 94 5.970140 TTTCGTGAACATTGACTAACGAA 57.030 34.783 13.23 13.23 45.19 3.85
94 95 5.749588 TCTTTTCGTGAACATTGACTAACGA 59.250 36.000 0.00 0.00 38.18 3.85
95 96 5.969741 TCTTTTCGTGAACATTGACTAACG 58.030 37.500 0.00 0.00 0.00 3.18
96 97 6.357240 GCTTCTTTTCGTGAACATTGACTAAC 59.643 38.462 0.00 0.00 0.00 2.34
97 98 6.427150 GCTTCTTTTCGTGAACATTGACTAA 58.573 36.000 0.00 0.00 0.00 2.24
98 99 5.049680 GGCTTCTTTTCGTGAACATTGACTA 60.050 40.000 0.00 0.00 0.00 2.59
99 100 4.261197 GGCTTCTTTTCGTGAACATTGACT 60.261 41.667 0.00 0.00 0.00 3.41
100 101 3.975035 GGCTTCTTTTCGTGAACATTGAC 59.025 43.478 0.00 0.00 0.00 3.18
101 102 3.629855 TGGCTTCTTTTCGTGAACATTGA 59.370 39.130 0.00 0.00 0.00 2.57
102 103 3.963665 TGGCTTCTTTTCGTGAACATTG 58.036 40.909 0.00 0.00 0.00 2.82
103 104 3.882888 TCTGGCTTCTTTTCGTGAACATT 59.117 39.130 0.00 0.00 0.00 2.71
104 105 3.251004 GTCTGGCTTCTTTTCGTGAACAT 59.749 43.478 0.00 0.00 0.00 2.71
105 106 2.612212 GTCTGGCTTCTTTTCGTGAACA 59.388 45.455 0.00 0.00 0.00 3.18
106 107 2.612212 TGTCTGGCTTCTTTTCGTGAAC 59.388 45.455 0.00 0.00 0.00 3.18
107 108 2.912771 TGTCTGGCTTCTTTTCGTGAA 58.087 42.857 0.00 0.00 0.00 3.18
108 109 2.613026 TGTCTGGCTTCTTTTCGTGA 57.387 45.000 0.00 0.00 0.00 4.35
109 110 2.603173 GCTTGTCTGGCTTCTTTTCGTG 60.603 50.000 0.00 0.00 0.00 4.35
110 111 1.604278 GCTTGTCTGGCTTCTTTTCGT 59.396 47.619 0.00 0.00 0.00 3.85
111 112 1.398960 CGCTTGTCTGGCTTCTTTTCG 60.399 52.381 0.00 0.00 0.00 3.46
112 113 1.873591 TCGCTTGTCTGGCTTCTTTTC 59.126 47.619 0.00 0.00 0.00 2.29
113 114 1.967319 TCGCTTGTCTGGCTTCTTTT 58.033 45.000 0.00 0.00 0.00 2.27
114 115 2.079925 GATCGCTTGTCTGGCTTCTTT 58.920 47.619 0.00 0.00 0.00 2.52
115 116 1.677217 GGATCGCTTGTCTGGCTTCTT 60.677 52.381 0.00 0.00 0.00 2.52
116 117 0.107945 GGATCGCTTGTCTGGCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
117 118 1.424493 CGGATCGCTTGTCTGGCTTC 61.424 60.000 0.00 0.00 0.00 3.86
118 119 1.448540 CGGATCGCTTGTCTGGCTT 60.449 57.895 0.00 0.00 0.00 4.35
119 120 2.185350 CGGATCGCTTGTCTGGCT 59.815 61.111 0.00 0.00 0.00 4.75
120 121 2.892425 CCGGATCGCTTGTCTGGC 60.892 66.667 0.00 0.00 35.47 4.85
121 122 2.892425 GCCGGATCGCTTGTCTGG 60.892 66.667 5.05 3.97 43.62 3.86
122 123 2.169789 CAGCCGGATCGCTTGTCTG 61.170 63.158 5.05 0.00 36.82 3.51
123 124 2.185350 CAGCCGGATCGCTTGTCT 59.815 61.111 5.05 0.00 36.82 3.41
124 125 3.567797 GCAGCCGGATCGCTTGTC 61.568 66.667 5.05 0.00 36.82 3.18
125 126 3.612247 AAGCAGCCGGATCGCTTGT 62.612 57.895 22.62 5.76 44.05 3.16
126 127 2.821366 AAGCAGCCGGATCGCTTG 60.821 61.111 22.62 0.00 44.05 4.01
127 128 2.821366 CAAGCAGCCGGATCGCTT 60.821 61.111 19.24 19.24 46.57 4.68
128 129 4.087892 ACAAGCAGCCGGATCGCT 62.088 61.111 5.05 8.44 40.65 4.93
129 130 3.869272 CACAAGCAGCCGGATCGC 61.869 66.667 5.05 5.71 0.00 4.58
130 131 3.869272 GCACAAGCAGCCGGATCG 61.869 66.667 5.05 0.00 41.58 3.69
131 132 3.869272 CGCACAAGCAGCCGGATC 61.869 66.667 5.05 0.00 42.27 3.36
135 136 3.422303 TAAGCGCACAAGCAGCCG 61.422 61.111 11.47 0.00 42.27 5.52
136 137 2.176792 GTAAGCGCACAAGCAGCC 59.823 61.111 11.47 0.00 42.27 4.85
137 138 2.202222 CGTAAGCGCACAAGCAGC 60.202 61.111 11.47 0.00 42.27 5.25
138 139 2.476051 CCGTAAGCGCACAAGCAG 59.524 61.111 11.47 0.00 42.27 4.24
139 140 3.047280 CCCGTAAGCGCACAAGCA 61.047 61.111 11.47 0.00 42.27 3.91
140 141 3.799755 CCCCGTAAGCGCACAAGC 61.800 66.667 11.47 0.00 36.67 4.01
141 142 3.799755 GCCCCGTAAGCGCACAAG 61.800 66.667 11.47 0.00 36.67 3.16
188 189 3.564027 GAATCAGGCGCCGGTTCG 61.564 66.667 26.04 11.18 0.00 3.95
189 190 3.564027 CGAATCAGGCGCCGGTTC 61.564 66.667 26.04 25.40 0.00 3.62
196 197 1.154205 CCTAACTGGCGAATCAGGCG 61.154 60.000 0.00 0.00 38.98 5.52
197 198 0.178068 TCCTAACTGGCGAATCAGGC 59.822 55.000 0.00 0.00 38.98 4.85
198 199 1.808133 GCTCCTAACTGGCGAATCAGG 60.808 57.143 0.00 0.00 38.98 3.86
199 200 1.137872 AGCTCCTAACTGGCGAATCAG 59.862 52.381 0.00 0.00 40.40 2.90
200 201 1.195115 AGCTCCTAACTGGCGAATCA 58.805 50.000 0.00 0.00 35.26 2.57
201 202 2.317530 AAGCTCCTAACTGGCGAATC 57.682 50.000 0.00 0.00 35.26 2.52
202 203 2.789409 AAAGCTCCTAACTGGCGAAT 57.211 45.000 0.00 0.00 35.26 3.34
203 204 2.561478 AAAAGCTCCTAACTGGCGAA 57.439 45.000 0.00 0.00 35.26 4.70
204 205 2.038557 AGAAAAAGCTCCTAACTGGCGA 59.961 45.455 0.00 0.00 35.26 5.54
205 206 2.427506 AGAAAAAGCTCCTAACTGGCG 58.572 47.619 0.00 0.00 35.26 5.69
206 207 4.075682 AGAAGAAAAAGCTCCTAACTGGC 58.924 43.478 0.00 0.00 35.26 4.85
207 208 6.000840 AGAAGAAGAAAAAGCTCCTAACTGG 58.999 40.000 0.00 0.00 37.10 4.00
208 209 7.443879 AGAAGAAGAAGAAAAAGCTCCTAACTG 59.556 37.037 0.00 0.00 0.00 3.16
209 210 7.513856 AGAAGAAGAAGAAAAAGCTCCTAACT 58.486 34.615 0.00 0.00 0.00 2.24
210 211 7.737972 AGAAGAAGAAGAAAAAGCTCCTAAC 57.262 36.000 0.00 0.00 0.00 2.34
211 212 9.847224 TTTAGAAGAAGAAGAAAAAGCTCCTAA 57.153 29.630 0.00 0.00 0.00 2.69
212 213 9.847224 TTTTAGAAGAAGAAGAAAAAGCTCCTA 57.153 29.630 0.00 0.00 0.00 2.94
213 214 8.753497 TTTTAGAAGAAGAAGAAAAAGCTCCT 57.247 30.769 0.00 0.00 0.00 3.69
214 215 9.457110 CTTTTTAGAAGAAGAAGAAAAAGCTCC 57.543 33.333 5.50 0.00 39.12 4.70
215 216 9.457110 CCTTTTTAGAAGAAGAAGAAAAAGCTC 57.543 33.333 11.00 0.00 42.05 4.09
216 217 9.190317 TCCTTTTTAGAAGAAGAAGAAAAAGCT 57.810 29.630 11.00 0.00 42.05 3.74
217 218 9.803315 TTCCTTTTTAGAAGAAGAAGAAAAAGC 57.197 29.630 11.00 0.00 42.05 3.51
220 221 9.695155 TCCTTCCTTTTTAGAAGAAGAAGAAAA 57.305 29.630 2.16 0.00 42.80 2.29
221 222 9.343539 CTCCTTCCTTTTTAGAAGAAGAAGAAA 57.656 33.333 2.16 0.00 42.80 2.52
222 223 7.445707 GCTCCTTCCTTTTTAGAAGAAGAAGAA 59.554 37.037 2.16 0.00 42.80 2.52
223 224 6.937465 GCTCCTTCCTTTTTAGAAGAAGAAGA 59.063 38.462 2.16 0.00 42.80 2.87
224 225 6.939730 AGCTCCTTCCTTTTTAGAAGAAGAAG 59.060 38.462 2.16 0.00 42.80 2.85
225 226 6.842676 AGCTCCTTCCTTTTTAGAAGAAGAA 58.157 36.000 2.16 0.00 42.80 2.52
226 227 6.441088 AGCTCCTTCCTTTTTAGAAGAAGA 57.559 37.500 2.16 0.00 42.80 2.87
227 228 5.645929 GGAGCTCCTTCCTTTTTAGAAGAAG 59.354 44.000 26.25 0.00 42.80 2.85
228 229 5.515008 GGGAGCTCCTTCCTTTTTAGAAGAA 60.515 44.000 31.36 0.00 42.80 2.52
229 230 4.019231 GGGAGCTCCTTCCTTTTTAGAAGA 60.019 45.833 31.36 0.00 42.80 2.87
230 231 4.265893 GGGAGCTCCTTCCTTTTTAGAAG 58.734 47.826 31.36 0.00 40.39 2.85
231 232 3.010250 GGGGAGCTCCTTCCTTTTTAGAA 59.990 47.826 31.36 0.00 37.40 2.10
232 233 2.576648 GGGGAGCTCCTTCCTTTTTAGA 59.423 50.000 31.36 0.00 37.40 2.10
233 234 2.308866 TGGGGAGCTCCTTCCTTTTTAG 59.691 50.000 31.36 0.00 37.40 1.85
234 235 2.354328 TGGGGAGCTCCTTCCTTTTTA 58.646 47.619 31.36 6.81 37.40 1.52
235 236 1.158007 TGGGGAGCTCCTTCCTTTTT 58.842 50.000 31.36 0.00 37.40 1.94
236 237 1.158007 TTGGGGAGCTCCTTCCTTTT 58.842 50.000 31.36 0.00 37.40 2.27
237 238 1.387119 ATTGGGGAGCTCCTTCCTTT 58.613 50.000 31.36 13.71 37.40 3.11
238 239 1.387119 AATTGGGGAGCTCCTTCCTT 58.613 50.000 31.36 17.08 37.40 3.36
239 240 1.387119 AAATTGGGGAGCTCCTTCCT 58.613 50.000 31.36 12.17 37.40 3.36
240 241 2.103373 GAAAATTGGGGAGCTCCTTCC 58.897 52.381 31.36 24.53 36.46 3.46
241 242 3.020274 GAGAAAATTGGGGAGCTCCTTC 58.980 50.000 31.36 23.89 35.95 3.46
242 243 2.379907 TGAGAAAATTGGGGAGCTCCTT 59.620 45.455 31.36 17.12 35.95 3.36
243 244 1.995542 TGAGAAAATTGGGGAGCTCCT 59.004 47.619 31.36 10.64 35.95 3.69
244 245 2.095461 GTGAGAAAATTGGGGAGCTCC 58.905 52.381 25.59 25.59 0.00 4.70
245 246 2.795329 TGTGAGAAAATTGGGGAGCTC 58.205 47.619 4.71 4.71 0.00 4.09
246 247 2.978156 TGTGAGAAAATTGGGGAGCT 57.022 45.000 0.00 0.00 0.00 4.09
247 248 2.428530 GGATGTGAGAAAATTGGGGAGC 59.571 50.000 0.00 0.00 0.00 4.70
248 249 3.950395 GAGGATGTGAGAAAATTGGGGAG 59.050 47.826 0.00 0.00 0.00 4.30
249 250 3.309121 GGAGGATGTGAGAAAATTGGGGA 60.309 47.826 0.00 0.00 0.00 4.81
250 251 3.026694 GGAGGATGTGAGAAAATTGGGG 58.973 50.000 0.00 0.00 0.00 4.96
251 252 3.700538 TGGAGGATGTGAGAAAATTGGG 58.299 45.455 0.00 0.00 0.00 4.12
252 253 5.449588 CGAATGGAGGATGTGAGAAAATTGG 60.450 44.000 0.00 0.00 0.00 3.16
253 254 5.124457 ACGAATGGAGGATGTGAGAAAATTG 59.876 40.000 0.00 0.00 0.00 2.32
254 255 5.256474 ACGAATGGAGGATGTGAGAAAATT 58.744 37.500 0.00 0.00 0.00 1.82
255 256 4.848357 ACGAATGGAGGATGTGAGAAAAT 58.152 39.130 0.00 0.00 0.00 1.82
256 257 4.286297 ACGAATGGAGGATGTGAGAAAA 57.714 40.909 0.00 0.00 0.00 2.29
257 258 3.981071 ACGAATGGAGGATGTGAGAAA 57.019 42.857 0.00 0.00 0.00 2.52
258 259 3.981071 AACGAATGGAGGATGTGAGAA 57.019 42.857 0.00 0.00 0.00 2.87
259 260 3.981071 AAACGAATGGAGGATGTGAGA 57.019 42.857 0.00 0.00 0.00 3.27
260 261 4.256920 AGAAAACGAATGGAGGATGTGAG 58.743 43.478 0.00 0.00 0.00 3.51
261 262 4.020218 AGAGAAAACGAATGGAGGATGTGA 60.020 41.667 0.00 0.00 0.00 3.58
262 263 4.256920 AGAGAAAACGAATGGAGGATGTG 58.743 43.478 0.00 0.00 0.00 3.21
263 264 4.559862 AGAGAAAACGAATGGAGGATGT 57.440 40.909 0.00 0.00 0.00 3.06
264 265 4.697352 ACAAGAGAAAACGAATGGAGGATG 59.303 41.667 0.00 0.00 0.00 3.51
265 266 4.697352 CACAAGAGAAAACGAATGGAGGAT 59.303 41.667 0.00 0.00 0.00 3.24
266 267 4.065088 CACAAGAGAAAACGAATGGAGGA 58.935 43.478 0.00 0.00 0.00 3.71
267 268 3.815401 ACACAAGAGAAAACGAATGGAGG 59.185 43.478 0.00 0.00 0.00 4.30
268 269 5.007626 TCAACACAAGAGAAAACGAATGGAG 59.992 40.000 0.00 0.00 0.00 3.86
269 270 4.878971 TCAACACAAGAGAAAACGAATGGA 59.121 37.500 0.00 0.00 0.00 3.41
270 271 5.168526 TCAACACAAGAGAAAACGAATGG 57.831 39.130 0.00 0.00 0.00 3.16
271 272 5.207768 CCTCAACACAAGAGAAAACGAATG 58.792 41.667 0.00 0.00 35.09 2.67
272 273 4.261197 GCCTCAACACAAGAGAAAACGAAT 60.261 41.667 0.00 0.00 35.09 3.34
273 274 3.064820 GCCTCAACACAAGAGAAAACGAA 59.935 43.478 0.00 0.00 35.09 3.85
274 275 2.612212 GCCTCAACACAAGAGAAAACGA 59.388 45.455 0.00 0.00 35.09 3.85
275 276 2.614057 AGCCTCAACACAAGAGAAAACG 59.386 45.455 0.00 0.00 35.09 3.60
276 277 3.879892 AGAGCCTCAACACAAGAGAAAAC 59.120 43.478 0.00 0.00 35.09 2.43
277 278 4.130118 GAGAGCCTCAACACAAGAGAAAA 58.870 43.478 0.00 0.00 35.09 2.29
278 279 3.134623 TGAGAGCCTCAACACAAGAGAAA 59.865 43.478 0.00 0.00 37.57 2.52
279 280 2.700371 TGAGAGCCTCAACACAAGAGAA 59.300 45.455 0.00 0.00 37.57 2.87
280 281 2.298446 CTGAGAGCCTCAACACAAGAGA 59.702 50.000 6.39 0.00 40.18 3.10
281 282 2.686235 CTGAGAGCCTCAACACAAGAG 58.314 52.381 6.39 0.00 40.18 2.85
282 283 1.270518 GCTGAGAGCCTCAACACAAGA 60.271 52.381 6.39 0.00 40.18 3.02
283 284 1.155042 GCTGAGAGCCTCAACACAAG 58.845 55.000 6.39 0.00 40.18 3.16
284 285 3.312404 GCTGAGAGCCTCAACACAA 57.688 52.632 6.39 0.00 40.18 3.33
294 295 1.217779 GGTGTGAGAGGCTGAGAGC 59.782 63.158 0.00 0.00 41.46 4.09
295 296 2.136298 TAGGTGTGAGAGGCTGAGAG 57.864 55.000 0.00 0.00 0.00 3.20
296 297 2.291865 ACATAGGTGTGAGAGGCTGAGA 60.292 50.000 0.00 0.00 37.14 3.27
297 298 2.106566 ACATAGGTGTGAGAGGCTGAG 58.893 52.381 0.00 0.00 37.14 3.35
298 299 2.238084 ACATAGGTGTGAGAGGCTGA 57.762 50.000 0.00 0.00 37.14 4.26
299 300 3.340814 AAACATAGGTGTGAGAGGCTG 57.659 47.619 0.00 0.00 38.92 4.85
300 301 4.373156 AAAAACATAGGTGTGAGAGGCT 57.627 40.909 0.00 0.00 38.92 4.58
351 352 0.755327 GGCCCCACAGTGTGAAAACT 60.755 55.000 24.99 0.00 35.23 2.66
352 353 1.040339 TGGCCCCACAGTGTGAAAAC 61.040 55.000 24.99 12.09 35.23 2.43
353 354 0.754957 CTGGCCCCACAGTGTGAAAA 60.755 55.000 24.99 4.59 35.23 2.29
434 442 0.107508 CTGTCTGAATGATGGGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
442 450 1.546029 CTGTCGTCCCTGTCTGAATGA 59.454 52.381 0.00 0.00 0.00 2.57
444 452 1.821753 CTCTGTCGTCCCTGTCTGAAT 59.178 52.381 0.00 0.00 0.00 2.57
445 453 1.248486 CTCTGTCGTCCCTGTCTGAA 58.752 55.000 0.00 0.00 0.00 3.02
446 454 1.244697 GCTCTGTCGTCCCTGTCTGA 61.245 60.000 0.00 0.00 0.00 3.27
455 463 4.400109 TGTCCGCGCTCTGTCGTC 62.400 66.667 5.56 0.00 0.00 4.20
459 476 3.848347 CTGTGTGTCCGCGCTCTGT 62.848 63.158 5.56 0.00 0.00 3.41
547 581 0.108851 CCCGGAGCCGAAATTTTTGG 60.109 55.000 11.05 10.64 42.83 3.28
548 582 0.735978 GCCCGGAGCCGAAATTTTTG 60.736 55.000 11.05 0.00 42.83 2.44
553 587 4.796495 GGTGCCCGGAGCCGAAAT 62.796 66.667 11.05 0.00 42.71 2.17
957 1079 2.367378 CTAGGGTTCCGGGGGAGT 59.633 66.667 0.00 0.00 31.21 3.85
1125 1635 2.027625 CTTCTTGCCGGACGTGGTC 61.028 63.158 5.05 0.00 0.00 4.02
1156 1678 2.643232 GCTGCTTCTTGGCCTTGGG 61.643 63.158 3.32 0.00 0.00 4.12
1157 1679 1.874345 CTGCTGCTTCTTGGCCTTGG 61.874 60.000 3.32 0.00 0.00 3.61
1158 1680 0.892358 TCTGCTGCTTCTTGGCCTTG 60.892 55.000 3.32 0.00 0.00 3.61
1159 1681 0.178981 TTCTGCTGCTTCTTGGCCTT 60.179 50.000 3.32 0.00 0.00 4.35
1160 1682 0.608582 CTTCTGCTGCTTCTTGGCCT 60.609 55.000 3.32 0.00 0.00 5.19
1161 1683 1.593296 CCTTCTGCTGCTTCTTGGCC 61.593 60.000 0.00 0.00 0.00 5.36
1162 1684 1.881602 CCTTCTGCTGCTTCTTGGC 59.118 57.895 0.00 0.00 0.00 4.52
1163 1685 1.593296 GGCCTTCTGCTGCTTCTTGG 61.593 60.000 0.00 0.00 40.92 3.61
1164 1686 0.892358 TGGCCTTCTGCTGCTTCTTG 60.892 55.000 3.32 0.00 40.92 3.02
1386 1917 1.545706 GGAACTCGGGCTCCTTGTCT 61.546 60.000 0.00 0.00 0.00 3.41
1518 2049 4.162131 AGGCTCAACAACCAAGAAAAATGT 59.838 37.500 0.00 0.00 0.00 2.71
1682 2213 4.219725 GGAAAGCAGGCACTTTTATGGTAA 59.780 41.667 6.93 0.00 39.93 2.85
1738 2269 2.372690 CGTGCTCCGTTGAACGAGG 61.373 63.158 20.47 11.91 46.05 4.63
1755 2286 0.666374 AAAAACAGGGCTTTCCGTCG 59.334 50.000 0.00 0.00 41.52 5.12
1778 2313 8.984891 TTGGAGCAATTACTGTTATTTTGATG 57.015 30.769 0.00 0.00 0.00 3.07
1780 2315 9.421806 CAATTGGAGCAATTACTGTTATTTTGA 57.578 29.630 0.00 0.00 41.40 2.69
1787 2322 4.870123 TGCAATTGGAGCAATTACTGTT 57.130 36.364 7.72 0.00 41.40 3.16
1789 2324 6.039047 AGTCTATGCAATTGGAGCAATTACTG 59.961 38.462 7.72 0.00 46.27 2.74
1803 2339 7.437748 CCTTAGCAGTAACTAGTCTATGCAAT 58.562 38.462 21.29 9.60 36.15 3.56
1947 2616 7.064253 ACGTTAAGCAACATTTAGAGTATCCAC 59.936 37.037 0.00 0.00 34.05 4.02
1953 2622 5.302360 TCCACGTTAAGCAACATTTAGAGT 58.698 37.500 0.00 0.00 34.05 3.24
1971 2641 1.068434 ACTTTGCCAACCAAATCCACG 59.932 47.619 0.00 0.00 42.22 4.94
1978 2648 4.951094 AGTAGTACAAACTTTGCCAACCAA 59.049 37.500 2.52 0.00 37.15 3.67
2086 2757 7.566879 AGATAGGAAGTGATTACTGAAGGATGT 59.433 37.037 0.00 0.00 37.19 3.06
2135 2806 5.455612 CCTCGTTTTCCCCAGCCTATAAATA 60.456 44.000 0.00 0.00 0.00 1.40
2273 2944 5.568685 AGTACAGACAGTGCATACTACAG 57.431 43.478 0.00 0.00 34.74 2.74
2369 3040 1.210155 GACACGCTTTGGGTCATGC 59.790 57.895 0.00 0.00 0.00 4.06
2499 3170 5.487153 AACAATGTATAAATGGCGCGTTA 57.513 34.783 8.43 0.00 0.00 3.18
2502 3173 4.597079 AGAAACAATGTATAAATGGCGCG 58.403 39.130 0.00 0.00 0.00 6.86
2543 3214 1.457346 CTGCTGGGTCCATCTGAAAC 58.543 55.000 0.00 0.00 0.00 2.78
2612 3283 6.615088 AGCAAATGTAGAATAAGCAACAGTG 58.385 36.000 0.00 0.00 0.00 3.66
2738 3457 2.513753 CACCCCTTGCAATGAACTGTA 58.486 47.619 0.00 0.00 0.00 2.74
2769 3488 6.777213 TTTTCAAGGCTTACAAGTTAACCA 57.223 33.333 0.00 0.00 0.00 3.67
2986 3709 9.653287 TCAACCAGTTTATCTGTCACTAATAAG 57.347 33.333 0.00 0.00 42.19 1.73
3023 3746 8.882736 GGGCAAATCAATTGTTTAAATTCTAGG 58.117 33.333 5.13 0.00 41.32 3.02
3205 3931 0.178981 AGCACAGCCCTGTTGACATT 60.179 50.000 0.00 0.00 42.83 2.71
3408 4134 9.657121 GAATCTAAGAATGAAATTTAGAAGCCG 57.343 33.333 0.00 0.00 36.07 5.52
3604 4330 2.238144 TCCTTTCCAAGAGGCTCATCAG 59.762 50.000 18.26 2.35 34.17 2.90
3671 4397 2.733956 TGGATTCCATTTTTCCTCCCG 58.266 47.619 0.00 0.00 0.00 5.14
3887 4614 4.678287 CAGTGCACTGCAAACTGAAATTAG 59.322 41.667 32.39 4.60 41.47 1.73
4026 4753 2.303022 TCAGACAATCTGGAGTGGAACC 59.697 50.000 6.01 0.00 44.39 3.62
4117 4844 1.680860 CGGTTGAACCCACTTATCCCC 60.681 57.143 9.08 0.00 33.75 4.81
4153 4880 2.543777 TCTCGTCTTCCAAAGGGTTG 57.456 50.000 0.00 0.00 34.93 3.77
4162 4889 6.363357 CCATTTGTTGATTTTTCTCGTCTTCC 59.637 38.462 0.00 0.00 0.00 3.46
4168 4895 7.145323 AGGTAACCATTTGTTGATTTTTCTCG 58.855 34.615 0.00 0.00 37.83 4.04
4213 4940 1.756538 AGGACAAACTTTGGTTGCAGG 59.243 47.619 6.47 0.00 35.63 4.85
4282 5009 4.202253 ACAAGACGGCTCAATGCATATCTA 60.202 41.667 0.00 0.00 45.15 1.98
4402 5129 5.660460 GAAGAAACAGAACAAACCATGGTT 58.340 37.500 24.86 24.86 40.45 3.67
4434 5161 7.614494 AGGCAACATATTTGTAGCAGAAATTT 58.386 30.769 0.00 0.00 34.06 1.82
4470 5197 1.472082 TGGCAGGCAAAATACGTCATG 59.528 47.619 0.00 0.00 0.00 3.07
4471 5198 1.745087 CTGGCAGGCAAAATACGTCAT 59.255 47.619 6.61 0.00 0.00 3.06
4530 5257 1.404479 TTGGAGCACCACCACGTACT 61.404 55.000 0.85 0.00 46.80 2.73
4591 5318 7.500227 CAGCAGATTTACATTTCTCCCTATTCA 59.500 37.037 0.00 0.00 0.00 2.57
4592 5319 7.716998 TCAGCAGATTTACATTTCTCCCTATTC 59.283 37.037 0.00 0.00 0.00 1.75
4593 5320 7.500559 GTCAGCAGATTTACATTTCTCCCTATT 59.499 37.037 0.00 0.00 0.00 1.73
4596 5323 5.045286 AGTCAGCAGATTTACATTTCTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
4734 5461 6.266330 AGGAAGAAATGAACAAGGGAAGAAAG 59.734 38.462 0.00 0.00 0.00 2.62
4776 5504 7.517320 TGTCTACCTGCATAATAATGGATGTT 58.483 34.615 0.00 0.00 34.84 2.71
4927 5655 1.403647 GGGAAAGGCCGTTTACAATGC 60.404 52.381 5.09 0.00 37.63 3.56
4929 5657 2.597578 AGGGAAAGGCCGTTTACAAT 57.402 45.000 5.09 0.00 37.63 2.71
4937 5665 2.298729 TGAAATGAAAAGGGAAAGGCCG 59.701 45.455 0.00 0.00 37.63 6.13
4969 5697 6.716628 AGAACAAAATTCAGGCATAAGACAGA 59.283 34.615 0.00 0.00 0.00 3.41
5138 5886 5.389935 GGAGAACAAGCACTGAAACTATTCG 60.390 44.000 0.00 0.00 38.46 3.34
5319 6067 6.458210 ACATTCAAAAAGGAATTAGGCAGTG 58.542 36.000 0.00 0.00 35.37 3.66
5372 6122 3.450904 TGTTCAGGTAGCATCCTAGGTT 58.549 45.455 9.08 0.00 35.87 3.50
5410 6160 7.737972 TTGTAACTTTCATTACTAGCAGCAA 57.262 32.000 0.00 0.00 36.25 3.91
5543 6339 4.841422 ACAGTTGGAGAAATGGAGAGATG 58.159 43.478 0.00 0.00 31.23 2.90
5546 6342 5.152623 TGTACAGTTGGAGAAATGGAGAG 57.847 43.478 0.00 0.00 31.23 3.20
5573 6380 5.641636 TCATAACGCATTGTGTGAGTAACAT 59.358 36.000 3.16 0.00 40.14 2.71
5590 6399 2.923020 GGCCTGCAAAAACATCATAACG 59.077 45.455 0.00 0.00 0.00 3.18
5615 6424 3.248446 ATCCCACCACAACCGACCG 62.248 63.158 0.00 0.00 0.00 4.79
5657 6466 1.079819 GTTGTGCGGCTCTGCTCTA 60.080 57.895 0.00 0.00 35.36 2.43
5672 6481 0.030638 CGCCAAAACTGACCTGGTTG 59.969 55.000 0.00 0.00 32.46 3.77
5691 6500 0.109597 CTGACGGCATTGGAAGTTGC 60.110 55.000 0.00 0.00 38.14 4.17
5705 6514 2.046313 GCACAAAACTGATTGCTGACG 58.954 47.619 0.00 0.00 33.52 4.35
5904 6721 3.312697 AGTTTCTGTCTCCAGTTTTTCGC 59.687 43.478 0.00 0.00 39.82 4.70
5991 6808 2.689034 GGAGTAGCCCAGTGCCCT 60.689 66.667 0.00 0.00 42.71 5.19
6029 6846 1.212375 CATACCCCACATCCACCTCA 58.788 55.000 0.00 0.00 0.00 3.86
6040 6857 0.546122 AAAGAGCGCATCATACCCCA 59.454 50.000 11.47 0.00 0.00 4.96
6056 6873 2.557920 AGCTGTCAGGGAGAACAAAG 57.442 50.000 1.14 0.00 0.00 2.77
6065 6882 0.179020 TGTTGGTGAAGCTGTCAGGG 60.179 55.000 1.14 0.00 36.74 4.45
6134 6951 4.373116 TGCTCGACAACCTCGCCC 62.373 66.667 0.00 0.00 42.62 6.13
6157 6974 2.935201 CACAACAGAAGATAGGCTCTGC 59.065 50.000 0.00 0.00 33.29 4.26
6170 6987 2.488167 CCACCCCACATAACACAACAGA 60.488 50.000 0.00 0.00 0.00 3.41
6171 6988 1.885887 CCACCCCACATAACACAACAG 59.114 52.381 0.00 0.00 0.00 3.16
6172 6989 1.479573 CCCACCCCACATAACACAACA 60.480 52.381 0.00 0.00 0.00 3.33
6266 7084 2.017049 ACAAGTTCAACCAGCTGACAC 58.983 47.619 17.39 3.99 0.00 3.67
6271 7089 2.146342 CGATCACAAGTTCAACCAGCT 58.854 47.619 0.00 0.00 0.00 4.24
6417 7235 4.883585 TGCCAGTAAATCTCCAGCAAATAG 59.116 41.667 0.00 0.00 0.00 1.73
6418 7236 4.854173 TGCCAGTAAATCTCCAGCAAATA 58.146 39.130 0.00 0.00 0.00 1.40
6419 7237 3.698040 CTGCCAGTAAATCTCCAGCAAAT 59.302 43.478 0.00 0.00 0.00 2.32
6420 7238 3.084039 CTGCCAGTAAATCTCCAGCAAA 58.916 45.455 0.00 0.00 0.00 3.68
6421 7239 2.040278 ACTGCCAGTAAATCTCCAGCAA 59.960 45.455 0.00 0.00 0.00 3.91
6422 7240 1.630369 ACTGCCAGTAAATCTCCAGCA 59.370 47.619 0.00 0.00 0.00 4.41
6423 7241 2.409948 ACTGCCAGTAAATCTCCAGC 57.590 50.000 0.00 0.00 0.00 4.85
6424 7242 5.431765 ACATAACTGCCAGTAAATCTCCAG 58.568 41.667 0.00 0.00 0.00 3.86
6425 7243 5.435686 ACATAACTGCCAGTAAATCTCCA 57.564 39.130 0.00 0.00 0.00 3.86
6426 7244 8.451908 AATAACATAACTGCCAGTAAATCTCC 57.548 34.615 0.00 0.00 0.00 3.71
6427 7245 9.331282 AGAATAACATAACTGCCAGTAAATCTC 57.669 33.333 0.00 0.00 0.00 2.75
6434 7252 6.653989 AGCTTAGAATAACATAACTGCCAGT 58.346 36.000 0.00 0.00 0.00 4.00
6451 7269 7.998383 TGCCCAAATCTATAATTTGAGCTTAGA 59.002 33.333 15.04 0.00 41.37 2.10
6465 7295 6.325352 ACCATTATTCCATGCCCAAATCTAT 58.675 36.000 0.00 0.00 0.00 1.98
6487 7317 4.585879 TGCAAAGGGAGTACTAATCAACC 58.414 43.478 0.00 0.00 0.00 3.77
6494 7324 5.686753 TGTTTCTTTGCAAAGGGAGTACTA 58.313 37.500 33.01 13.16 36.67 1.82
6498 7328 6.478512 TTTATGTTTCTTTGCAAAGGGAGT 57.521 33.333 33.01 19.76 36.67 3.85
6499 7329 6.986231 ACTTTTATGTTTCTTTGCAAAGGGAG 59.014 34.615 33.01 19.84 36.67 4.30
6500 7330 6.760770 CACTTTTATGTTTCTTTGCAAAGGGA 59.239 34.615 33.01 21.58 36.67 4.20
6501 7331 6.538381 ACACTTTTATGTTTCTTTGCAAAGGG 59.462 34.615 33.01 14.79 36.67 3.95
6502 7332 7.538303 ACACTTTTATGTTTCTTTGCAAAGG 57.462 32.000 33.01 18.07 36.67 3.11
6558 7388 9.853177 CTTTGTACTCCCTCCATAAAGAAATAT 57.147 33.333 0.00 0.00 0.00 1.28
6559 7389 8.832735 ACTTTGTACTCCCTCCATAAAGAAATA 58.167 33.333 0.00 0.00 0.00 1.40
6560 7390 7.699878 ACTTTGTACTCCCTCCATAAAGAAAT 58.300 34.615 0.00 0.00 0.00 2.17
6561 7391 7.086685 ACTTTGTACTCCCTCCATAAAGAAA 57.913 36.000 0.00 0.00 0.00 2.52
6562 7392 6.697641 ACTTTGTACTCCCTCCATAAAGAA 57.302 37.500 0.00 0.00 0.00 2.52
6563 7393 6.697641 AACTTTGTACTCCCTCCATAAAGA 57.302 37.500 0.00 0.00 0.00 2.52
6564 7394 8.893727 CATTAACTTTGTACTCCCTCCATAAAG 58.106 37.037 0.00 0.00 0.00 1.85
6565 7395 8.387813 ACATTAACTTTGTACTCCCTCCATAAA 58.612 33.333 0.00 0.00 0.00 1.40
6566 7396 7.924541 ACATTAACTTTGTACTCCCTCCATAA 58.075 34.615 0.00 0.00 0.00 1.90
6567 7397 7.504926 ACATTAACTTTGTACTCCCTCCATA 57.495 36.000 0.00 0.00 0.00 2.74
6568 7398 6.388619 ACATTAACTTTGTACTCCCTCCAT 57.611 37.500 0.00 0.00 0.00 3.41
6569 7399 5.836024 ACATTAACTTTGTACTCCCTCCA 57.164 39.130 0.00 0.00 0.00 3.86
6570 7400 6.346896 CCTACATTAACTTTGTACTCCCTCC 58.653 44.000 0.00 0.00 0.00 4.30
6571 7401 6.346896 CCCTACATTAACTTTGTACTCCCTC 58.653 44.000 0.00 0.00 0.00 4.30
6572 7402 5.191124 CCCCTACATTAACTTTGTACTCCCT 59.809 44.000 0.00 0.00 0.00 4.20
6573 7403 5.190330 TCCCCTACATTAACTTTGTACTCCC 59.810 44.000 0.00 0.00 0.00 4.30
6574 7404 6.303903 TCCCCTACATTAACTTTGTACTCC 57.696 41.667 0.00 0.00 0.00 3.85
6575 7405 8.044908 TGAATCCCCTACATTAACTTTGTACTC 58.955 37.037 0.00 0.00 0.00 2.59
6578 7408 7.608761 GTGTGAATCCCCTACATTAACTTTGTA 59.391 37.037 0.00 0.00 0.00 2.41
6592 7422 3.359033 CATCAACATGTGTGAATCCCCT 58.641 45.455 0.00 0.00 0.00 4.79
6596 7426 3.507233 ACACCCATCAACATGTGTGAATC 59.493 43.478 16.13 0.00 39.96 2.52
6597 7427 3.499338 ACACCCATCAACATGTGTGAAT 58.501 40.909 16.13 0.00 39.96 2.57
6599 7429 2.655090 ACACCCATCAACATGTGTGA 57.345 45.000 16.13 13.71 39.96 3.58
6603 7433 2.665165 ACAACACACCCATCAACATGT 58.335 42.857 0.00 0.00 0.00 3.21
6604 7434 4.844998 TTACAACACACCCATCAACATG 57.155 40.909 0.00 0.00 0.00 3.21
6605 7435 4.462483 GGATTACAACACACCCATCAACAT 59.538 41.667 0.00 0.00 0.00 2.71
6607 7437 4.079253 AGGATTACAACACACCCATCAAC 58.921 43.478 0.00 0.00 0.00 3.18
6608 7438 4.380843 AGGATTACAACACACCCATCAA 57.619 40.909 0.00 0.00 0.00 2.57
6609 7439 4.380843 AAGGATTACAACACACCCATCA 57.619 40.909 0.00 0.00 0.00 3.07
6610 7440 5.242838 TGAAAAGGATTACAACACACCCATC 59.757 40.000 0.00 0.00 0.00 3.51
6614 7444 4.278419 AGCTGAAAAGGATTACAACACACC 59.722 41.667 0.00 0.00 0.00 4.16
6615 7445 5.215160 CAGCTGAAAAGGATTACAACACAC 58.785 41.667 8.42 0.00 0.00 3.82
6616 7446 4.261572 GCAGCTGAAAAGGATTACAACACA 60.262 41.667 20.43 0.00 0.00 3.72
6617 7447 4.229876 GCAGCTGAAAAGGATTACAACAC 58.770 43.478 20.43 0.00 0.00 3.32
6618 7448 3.888323 TGCAGCTGAAAAGGATTACAACA 59.112 39.130 20.43 0.00 0.00 3.33
6619 7449 4.022849 AGTGCAGCTGAAAAGGATTACAAC 60.023 41.667 20.43 0.00 0.00 3.32
6621 7451 3.754965 AGTGCAGCTGAAAAGGATTACA 58.245 40.909 20.43 0.00 0.00 2.41
6622 7452 4.773323 AAGTGCAGCTGAAAAGGATTAC 57.227 40.909 20.43 0.00 0.00 1.89
6624 7454 4.401925 ACTAAGTGCAGCTGAAAAGGATT 58.598 39.130 20.43 4.07 0.00 3.01
6625 7455 4.006319 GACTAAGTGCAGCTGAAAAGGAT 58.994 43.478 20.43 0.00 0.00 3.24
6627 7457 3.141398 TGACTAAGTGCAGCTGAAAAGG 58.859 45.455 20.43 4.72 0.00 3.11
6628 7458 4.818534 TTGACTAAGTGCAGCTGAAAAG 57.181 40.909 20.43 8.18 0.00 2.27
6629 7459 5.299028 TGATTTGACTAAGTGCAGCTGAAAA 59.701 36.000 20.43 0.00 0.00 2.29
6631 7461 4.388485 TGATTTGACTAAGTGCAGCTGAA 58.612 39.130 20.43 2.96 0.00 3.02
6632 7462 4.006780 TGATTTGACTAAGTGCAGCTGA 57.993 40.909 20.43 0.00 0.00 4.26
6633 7463 4.155462 ACATGATTTGACTAAGTGCAGCTG 59.845 41.667 10.11 10.11 0.00 4.24
6635 7465 4.394300 AGACATGATTTGACTAAGTGCAGC 59.606 41.667 0.00 0.00 0.00 5.25
6636 7466 7.118245 TGTTAGACATGATTTGACTAAGTGCAG 59.882 37.037 0.00 0.00 41.22 4.41
6637 7467 6.934083 TGTTAGACATGATTTGACTAAGTGCA 59.066 34.615 0.00 0.00 41.22 4.57
6638 7468 7.364522 TGTTAGACATGATTTGACTAAGTGC 57.635 36.000 0.00 0.00 41.22 4.40
6740 7581 5.413309 TTCTCTCCCTCTGATGTTTTCTC 57.587 43.478 0.00 0.00 0.00 2.87
6749 7590 5.013079 TGCTAAATGTTTTCTCTCCCTCTGA 59.987 40.000 0.00 0.00 0.00 3.27
6812 7678 1.036707 CCGTGGTGTGTTTTCCCATT 58.963 50.000 0.00 0.00 0.00 3.16
6813 7679 0.106419 ACCGTGGTGTGTTTTCCCAT 60.106 50.000 0.00 0.00 0.00 4.00
6814 7680 0.748729 GACCGTGGTGTGTTTTCCCA 60.749 55.000 0.00 0.00 0.00 4.37
6815 7681 1.778027 CGACCGTGGTGTGTTTTCCC 61.778 60.000 0.00 0.00 0.00 3.97
6816 7682 0.810823 TCGACCGTGGTGTGTTTTCC 60.811 55.000 0.00 0.00 0.00 3.13
6817 7683 1.223187 ATCGACCGTGGTGTGTTTTC 58.777 50.000 0.00 0.00 0.00 2.29
6824 7697 0.179145 GTGACCTATCGACCGTGGTG 60.179 60.000 0.00 0.00 32.30 4.17
6825 7698 0.609957 TGTGACCTATCGACCGTGGT 60.610 55.000 0.00 0.00 35.23 4.16
6826 7699 0.744874 ATGTGACCTATCGACCGTGG 59.255 55.000 0.00 0.00 0.00 4.94
6830 7703 0.753262 AGGCATGTGACCTATCGACC 59.247 55.000 0.00 0.00 35.10 4.79
6833 7706 2.477825 CAAGAGGCATGTGACCTATCG 58.522 52.381 0.00 0.00 37.77 2.92
6859 7732 3.624777 CCTGGGATCACAGTTATGCTTT 58.375 45.455 23.26 0.00 36.75 3.51
6860 7733 2.092212 CCCTGGGATCACAGTTATGCTT 60.092 50.000 23.26 0.00 36.75 3.91
6861 7734 1.492176 CCCTGGGATCACAGTTATGCT 59.508 52.381 23.26 0.00 36.75 3.79
6862 7735 1.477558 CCCCTGGGATCACAGTTATGC 60.478 57.143 23.26 0.00 36.75 3.14
6863 7736 1.846439 ACCCCTGGGATCACAGTTATG 59.154 52.381 23.26 10.81 36.75 1.90
6865 7740 1.580059 GACCCCTGGGATCACAGTTA 58.420 55.000 23.26 0.00 36.75 2.24
6869 7744 1.987855 GACGACCCCTGGGATCACA 60.988 63.158 16.20 0.00 38.96 3.58
6877 7752 2.711922 CCGGAGAAGACGACCCCTG 61.712 68.421 0.00 0.00 0.00 4.45
6881 7756 2.280823 ATTCGCCGGAGAAGACGACC 62.281 60.000 24.94 0.00 33.69 4.79
6884 7759 0.457853 TTGATTCGCCGGAGAAGACG 60.458 55.000 24.94 8.67 33.19 4.18
6888 7763 0.251916 ATGGTTGATTCGCCGGAGAA 59.748 50.000 23.27 23.27 34.31 2.87
6892 7767 3.495670 TTAAAATGGTTGATTCGCCGG 57.504 42.857 0.00 0.00 0.00 6.13
6893 7768 4.267452 CCAATTAAAATGGTTGATTCGCCG 59.733 41.667 3.13 0.00 33.08 6.46
6894 7769 4.570369 CCCAATTAAAATGGTTGATTCGCC 59.430 41.667 9.17 0.00 36.14 5.54
6895 7770 5.415221 TCCCAATTAAAATGGTTGATTCGC 58.585 37.500 9.17 0.00 36.14 4.70
6896 7771 7.096551 AGTTCCCAATTAAAATGGTTGATTCG 58.903 34.615 9.17 0.00 36.14 3.34
6906 7781 5.238650 CGGCGATAGAGTTCCCAATTAAAAT 59.761 40.000 0.00 0.00 39.76 1.82
6910 7785 2.960384 TCGGCGATAGAGTTCCCAATTA 59.040 45.455 4.99 0.00 39.76 1.40
6914 7789 0.395311 ACTCGGCGATAGAGTTCCCA 60.395 55.000 11.27 0.00 45.74 4.37
6915 7790 2.416901 ACTCGGCGATAGAGTTCCC 58.583 57.895 11.27 0.00 45.74 3.97
6955 7831 5.179368 ACATGATGTCCTTTGTGTAACTTCG 59.821 40.000 0.00 0.00 38.04 3.79
6956 7832 6.373779 CACATGATGTCCTTTGTGTAACTTC 58.626 40.000 0.00 0.00 38.04 3.01
6965 7841 3.752747 TGCTGTACACATGATGTCCTTTG 59.247 43.478 0.00 0.00 42.09 2.77
6982 7858 4.406456 TGTGTTCCCTTCATAATTGCTGT 58.594 39.130 0.00 0.00 0.00 4.40
7075 7951 7.285629 TGTCCTGGTACATCAGATTTCTACTAG 59.714 40.741 0.00 0.00 38.20 2.57
7076 7952 7.123383 TGTCCTGGTACATCAGATTTCTACTA 58.877 38.462 0.00 0.00 38.20 1.82
7078 7954 6.222038 TGTCCTGGTACATCAGATTTCTAC 57.778 41.667 0.00 0.00 38.20 2.59
7080 7956 5.762179 TTGTCCTGGTACATCAGATTTCT 57.238 39.130 0.00 0.00 38.20 2.52
7081 7957 6.173339 TCTTTGTCCTGGTACATCAGATTTC 58.827 40.000 0.00 0.00 38.20 2.17
7082 7958 6.126863 TCTTTGTCCTGGTACATCAGATTT 57.873 37.500 0.00 0.00 38.20 2.17
7083 7959 5.762179 TCTTTGTCCTGGTACATCAGATT 57.238 39.130 0.00 0.00 38.20 2.40
7084 7960 5.338708 CCTTCTTTGTCCTGGTACATCAGAT 60.339 44.000 0.00 0.00 38.20 2.90
7095 7981 5.291971 CAAAATGTTCCCTTCTTTGTCCTG 58.708 41.667 0.00 0.00 0.00 3.86
7106 7992 3.205338 GCAAAACTGCAAAATGTTCCCT 58.795 40.909 0.00 0.00 34.41 4.20
7107 7993 2.290367 GGCAAAACTGCAAAATGTTCCC 59.710 45.455 0.00 0.00 36.33 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.