Multiple sequence alignment - TraesCS6B01G418500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G418500 chr6B 100.000 7598 0 0 1 7598 690727467 690735064 0.000000e+00 14031.0
1 TraesCS6B01G418500 chr6B 83.305 2384 288 75 5153 7478 690451674 690449343 0.000000e+00 2097.0
2 TraesCS6B01G418500 chr6B 85.078 1930 241 33 5155 7058 690443425 690441517 0.000000e+00 1925.0
3 TraesCS6B01G418500 chr6B 86.034 1253 144 21 5165 6409 690331411 690330182 0.000000e+00 1315.0
4 TraesCS6B01G418500 chr6B 87.019 416 34 12 6398 6812 690328141 690327745 1.160000e-122 451.0
5 TraesCS6B01G418500 chr6B 92.193 269 20 1 7224 7491 636562839 636562571 5.560000e-101 379.0
6 TraesCS6B01G418500 chr6B 79.276 497 59 20 267 748 690585620 690586087 2.660000e-79 307.0
7 TraesCS6B01G418500 chr6B 87.004 277 21 8 800 1062 690586176 690586451 1.600000e-76 298.0
8 TraesCS6B01G418500 chr6B 92.000 150 11 1 5153 5301 690452668 690452519 7.730000e-50 209.0
9 TraesCS6B01G418500 chr6A 94.025 7331 322 56 267 7522 600451982 600459271 0.000000e+00 11005.0
10 TraesCS6B01G418500 chr6A 86.093 2337 233 49 5157 7451 600396392 600394106 0.000000e+00 2431.0
11 TraesCS6B01G418500 chr6A 95.911 269 10 1 1 269 15908984 15908717 1.170000e-117 435.0
12 TraesCS6B01G418500 chr6D 95.494 3728 127 15 3810 7522 454249161 454252862 0.000000e+00 5915.0
13 TraesCS6B01G418500 chr6D 94.830 3037 134 14 796 3810 454245968 454249003 0.000000e+00 4717.0
14 TraesCS6B01G418500 chr6D 86.181 2388 239 54 5174 7523 454129777 454127443 0.000000e+00 2497.0
15 TraesCS6B01G418500 chr6D 83.151 2374 289 65 5153 7473 454217766 454215451 0.000000e+00 2065.0
16 TraesCS6B01G418500 chr6D 86.083 1703 192 31 5153 6834 454226032 454224354 0.000000e+00 1790.0
17 TraesCS6B01G418500 chr6D 81.081 592 65 28 6915 7478 454224098 454223526 5.450000e-116 429.0
18 TraesCS6B01G418500 chr6D 92.193 269 17 3 7224 7491 6096777 6097042 2.000000e-100 377.0
19 TraesCS6B01G418500 chr1B 95.556 270 12 0 1 270 672976935 672976666 4.210000e-117 433.0
20 TraesCS6B01G418500 chr1B 95.131 267 13 0 1 267 688636 688370 9.120000e-114 422.0
21 TraesCS6B01G418500 chr1B 95.131 267 13 0 1 267 672866365 672866099 9.120000e-114 422.0
22 TraesCS6B01G418500 chr1B 94.231 52 3 0 7543 7594 51510920 51510869 6.320000e-11 80.5
23 TraesCS6B01G418500 chr3B 97.244 254 7 0 2 255 550973685 550973432 1.510000e-116 431.0
24 TraesCS6B01G418500 chr3B 95.131 267 12 1 1 266 981282 981548 3.280000e-113 420.0
25 TraesCS6B01G418500 chr3B 95.131 267 12 1 1 267 790170216 790170481 3.280000e-113 420.0
26 TraesCS6B01G418500 chr3B 97.917 48 1 0 7543 7590 181804716 181804763 4.890000e-12 84.2
27 TraesCS6B01G418500 chr3B 94.231 52 3 0 7543 7594 706502574 706502625 6.320000e-11 80.5
28 TraesCS6B01G418500 chr3B 95.833 48 2 0 7543 7590 601615639 601615686 2.270000e-10 78.7
29 TraesCS6B01G418500 chr2B 95.113 266 13 0 1 266 539362639 539362904 3.280000e-113 420.0
30 TraesCS6B01G418500 chr2A 94.815 270 13 1 1 270 765014739 765015007 3.280000e-113 420.0
31 TraesCS6B01G418500 chr2A 95.833 48 2 0 7543 7590 347015978 347015931 2.270000e-10 78.7
32 TraesCS6B01G418500 chr7D 90.411 292 25 3 7206 7496 590895070 590894781 1.550000e-101 381.0
33 TraesCS6B01G418500 chr7D 92.193 269 20 1 7224 7491 567630214 567630482 5.560000e-101 379.0
34 TraesCS6B01G418500 chr7D 96.154 52 2 0 7543 7594 590894687 590894636 1.360000e-12 86.1
35 TraesCS6B01G418500 chr3D 91.822 269 20 2 7224 7491 529249588 529249855 2.590000e-99 374.0
36 TraesCS6B01G418500 chr7B 91.241 274 21 2 7224 7496 242513748 242513477 3.350000e-98 370.0
37 TraesCS6B01G418500 chr5D 97.917 48 1 0 7543 7590 448114409 448114362 4.890000e-12 84.2
38 TraesCS6B01G418500 chr5B 91.803 61 3 2 7530 7590 667470271 667470329 4.890000e-12 84.2
39 TraesCS6B01G418500 chr4A 89.231 65 5 2 7530 7594 31215272 31215334 6.320000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G418500 chr6B 690727467 690735064 7597 False 14031.0 14031 100.0000 1 7598 1 chr6B.!!$F1 7597
1 TraesCS6B01G418500 chr6B 690441517 690443425 1908 True 1925.0 1925 85.0780 5155 7058 1 chr6B.!!$R2 1903
2 TraesCS6B01G418500 chr6B 690449343 690452668 3325 True 1153.0 2097 87.6525 5153 7478 2 chr6B.!!$R4 2325
3 TraesCS6B01G418500 chr6B 690327745 690331411 3666 True 883.0 1315 86.5265 5165 6812 2 chr6B.!!$R3 1647
4 TraesCS6B01G418500 chr6B 690585620 690586451 831 False 302.5 307 83.1400 267 1062 2 chr6B.!!$F2 795
5 TraesCS6B01G418500 chr6A 600451982 600459271 7289 False 11005.0 11005 94.0250 267 7522 1 chr6A.!!$F1 7255
6 TraesCS6B01G418500 chr6A 600394106 600396392 2286 True 2431.0 2431 86.0930 5157 7451 1 chr6A.!!$R2 2294
7 TraesCS6B01G418500 chr6D 454245968 454252862 6894 False 5316.0 5915 95.1620 796 7522 2 chr6D.!!$F2 6726
8 TraesCS6B01G418500 chr6D 454127443 454129777 2334 True 2497.0 2497 86.1810 5174 7523 1 chr6D.!!$R1 2349
9 TraesCS6B01G418500 chr6D 454215451 454217766 2315 True 2065.0 2065 83.1510 5153 7473 1 chr6D.!!$R2 2320
10 TraesCS6B01G418500 chr6D 454223526 454226032 2506 True 1109.5 1790 83.5820 5153 7478 2 chr6D.!!$R3 2325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.103390 TGTGCGGATATACACACGGG 59.897 55.000 1.73 0.00 41.67 5.28 F
257 258 0.324943 TGCACCTAGGAGCCAAAGAC 59.675 55.000 25.94 0.15 0.00 3.01 F
1641 1757 0.175302 ACAGAGAGAGCCTTGATGCG 59.825 55.000 0.00 0.00 36.02 4.73 F
2001 2117 0.318360 CCGTGCACGTTGTAGACTCA 60.318 55.000 34.81 0.00 37.74 3.41 F
2121 2237 1.000938 GAGAAAGCAGCAACAAGTGGG 60.001 52.381 0.00 0.00 0.00 4.61 F
3182 3303 1.106285 GGGGTGATTGCTGGTTGATC 58.894 55.000 0.00 0.00 0.00 2.92 F
3980 4260 0.678395 CTATGTGATCTGGCTCGGCT 59.322 55.000 0.00 0.00 0.00 5.52 F
5183 5463 0.250234 GGGAGCATGCTGTCACACTA 59.750 55.000 28.27 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1738 0.175302 CGCATCAAGGCTCTCTCTGT 59.825 55.000 0.00 0.0 0.00 3.41 R
1944 2060 0.322277 AACTGCTGCCTCCATCACAG 60.322 55.000 0.00 0.0 34.48 3.66 R
2442 2558 2.099141 TTCCAGCATTCTTCAGGTCG 57.901 50.000 0.00 0.0 0.00 4.79 R
3182 3303 2.367202 ATCTACACCTGGGGCACGG 61.367 63.158 0.00 0.0 0.00 4.94 R
3569 3690 3.682292 CTTCCCCCTGCTACGCCAC 62.682 68.421 0.00 0.0 0.00 5.01 R
4750 5030 1.134848 ACAATGGTTTGGCACACACAC 60.135 47.619 6.08 0.0 41.41 3.82 R
5413 5702 0.465278 GCCTGCTGGATTTCTCCCTC 60.465 60.000 14.77 0.0 41.29 4.30 R
7120 9722 0.305922 GCAGGCGCATAGATTCACAC 59.694 55.000 10.83 0.0 38.36 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.785511 TTCACAAGGTTTCGGTGAAAAA 57.214 36.364 4.15 0.00 45.51 1.94
24 25 2.849473 CACAAGGTTTCGGTGAAAAACG 59.151 45.455 0.00 0.00 37.46 3.60
25 26 2.748532 ACAAGGTTTCGGTGAAAAACGA 59.251 40.909 0.00 0.00 37.46 3.85
72 73 9.783081 AAAAAGATAAAGAAATGCCTTGTGAAT 57.217 25.926 0.00 0.00 0.00 2.57
75 76 8.814038 AGATAAAGAAATGCCTTGTGAATAGT 57.186 30.769 0.00 0.00 0.00 2.12
76 77 9.247861 AGATAAAGAAATGCCTTGTGAATAGTT 57.752 29.630 0.00 0.00 0.00 2.24
80 81 8.635765 AAGAAATGCCTTGTGAATAGTTAGAA 57.364 30.769 0.00 0.00 0.00 2.10
81 82 8.814038 AGAAATGCCTTGTGAATAGTTAGAAT 57.186 30.769 0.00 0.00 0.00 2.40
83 84 8.579850 AAATGCCTTGTGAATAGTTAGAATGA 57.420 30.769 0.00 0.00 0.00 2.57
85 86 7.615582 TGCCTTGTGAATAGTTAGAATGAAG 57.384 36.000 0.00 0.00 0.00 3.02
86 87 6.094048 TGCCTTGTGAATAGTTAGAATGAAGC 59.906 38.462 0.00 0.00 0.00 3.86
87 88 6.094048 GCCTTGTGAATAGTTAGAATGAAGCA 59.906 38.462 0.00 0.00 0.00 3.91
90 91 8.791327 TTGTGAATAGTTAGAATGAAGCATCA 57.209 30.769 0.00 0.00 40.57 3.07
91 92 8.429493 TGTGAATAGTTAGAATGAAGCATCAG 57.571 34.615 0.00 0.00 39.39 2.90
92 93 8.260114 TGTGAATAGTTAGAATGAAGCATCAGA 58.740 33.333 0.00 0.00 39.39 3.27
94 95 9.671279 TGAATAGTTAGAATGAAGCATCAGAAA 57.329 29.630 0.00 0.00 39.39 2.52
142 143 6.641176 AAAACATCGTTTTTCACTGAAACC 57.359 33.333 3.56 0.00 34.35 3.27
143 144 5.576447 AACATCGTTTTTCACTGAAACCT 57.424 34.783 3.56 0.00 34.35 3.50
145 146 5.339990 ACATCGTTTTTCACTGAAACCTTG 58.660 37.500 3.56 1.86 34.35 3.61
146 147 5.105917 ACATCGTTTTTCACTGAAACCTTGT 60.106 36.000 3.56 2.39 34.35 3.16
147 148 4.728534 TCGTTTTTCACTGAAACCTTGTG 58.271 39.130 3.56 0.00 34.35 3.33
148 149 3.303229 CGTTTTTCACTGAAACCTTGTGC 59.697 43.478 3.56 0.00 34.35 4.57
149 150 4.241681 GTTTTTCACTGAAACCTTGTGCA 58.758 39.130 3.56 0.00 30.83 4.57
151 152 1.013596 TCACTGAAACCTTGTGCACG 58.986 50.000 13.13 0.00 0.00 5.34
152 153 0.592247 CACTGAAACCTTGTGCACGC 60.592 55.000 13.13 0.00 0.00 5.34
153 154 1.029408 ACTGAAACCTTGTGCACGCA 61.029 50.000 13.13 0.00 0.00 5.24
154 155 0.592247 CTGAAACCTTGTGCACGCAC 60.592 55.000 15.20 15.20 46.33 5.34
179 180 3.652292 TGTGCGGATATACACACGG 57.348 52.632 1.73 0.00 41.67 4.94
180 181 0.103390 TGTGCGGATATACACACGGG 59.897 55.000 1.73 0.00 41.67 5.28
181 182 0.386476 GTGCGGATATACACACGGGA 59.614 55.000 0.00 0.00 36.77 5.14
182 183 1.000506 GTGCGGATATACACACGGGAT 59.999 52.381 0.00 0.00 36.77 3.85
183 184 1.689813 TGCGGATATACACACGGGATT 59.310 47.619 0.00 0.00 0.00 3.01
184 185 2.103432 TGCGGATATACACACGGGATTT 59.897 45.455 0.00 0.00 0.00 2.17
185 186 3.135994 GCGGATATACACACGGGATTTT 58.864 45.455 0.00 0.00 0.00 1.82
186 187 3.562557 GCGGATATACACACGGGATTTTT 59.437 43.478 0.00 0.00 0.00 1.94
188 189 4.573201 CGGATATACACACGGGATTTTTGT 59.427 41.667 0.00 0.00 0.00 2.83
189 190 5.065474 CGGATATACACACGGGATTTTTGTT 59.935 40.000 0.00 0.00 0.00 2.83
190 191 6.492254 GGATATACACACGGGATTTTTGTTC 58.508 40.000 0.00 0.00 0.00 3.18
191 192 4.776795 ATACACACGGGATTTTTGTTCC 57.223 40.909 0.00 0.00 0.00 3.62
192 193 1.335496 ACACACGGGATTTTTGTTCCG 59.665 47.619 0.00 0.00 46.95 4.30
195 196 2.888414 ACACGGGATTTTTGTTCCGAAT 59.112 40.909 7.63 0.00 44.69 3.34
198 199 4.747605 CACGGGATTTTTGTTCCGAATTTT 59.252 37.500 7.63 0.00 44.69 1.82
199 200 5.235401 CACGGGATTTTTGTTCCGAATTTTT 59.765 36.000 7.63 0.00 44.69 1.94
200 201 5.464057 ACGGGATTTTTGTTCCGAATTTTTC 59.536 36.000 7.63 0.00 44.69 2.29
201 202 5.463724 CGGGATTTTTGTTCCGAATTTTTCA 59.536 36.000 0.00 0.00 44.69 2.69
202 203 6.018669 CGGGATTTTTGTTCCGAATTTTTCAA 60.019 34.615 0.00 0.00 44.69 2.69
203 204 7.129622 GGGATTTTTGTTCCGAATTTTTCAAC 58.870 34.615 0.00 0.00 33.82 3.18
205 206 8.394877 GGATTTTTGTTCCGAATTTTTCAACTT 58.605 29.630 0.00 0.00 0.00 2.66
206 207 9.767684 GATTTTTGTTCCGAATTTTTCAACTTT 57.232 25.926 0.00 0.00 0.00 2.66
208 209 9.600646 TTTTTGTTCCGAATTTTTCAACTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
209 210 6.561945 TGTTCCGAATTTTTCAACTTTTCG 57.438 33.333 0.00 0.00 39.00 3.46
210 211 6.323266 TGTTCCGAATTTTTCAACTTTTCGA 58.677 32.000 5.06 0.00 41.09 3.71
211 212 6.807230 TGTTCCGAATTTTTCAACTTTTCGAA 59.193 30.769 0.00 0.00 41.09 3.71
216 217 7.578736 CCGAATTTTTCAACTTTTCGAAATGTG 59.421 33.333 24.84 18.95 41.09 3.21
226 227 7.924103 ACTTTTCGAAATGTGTATTTTGACC 57.076 32.000 23.88 0.00 43.21 4.02
227 228 7.484975 ACTTTTCGAAATGTGTATTTTGACCA 58.515 30.769 23.88 0.00 43.21 4.02
229 230 7.865875 TTTCGAAATGTGTATTTTGACCATG 57.134 32.000 6.47 0.00 43.21 3.66
232 233 5.336372 CGAAATGTGTATTTTGACCATGGGT 60.336 40.000 18.09 0.99 39.17 4.51
233 234 5.404466 AATGTGTATTTTGACCATGGGTG 57.596 39.130 18.09 0.00 35.25 4.61
235 236 2.560542 GTGTATTTTGACCATGGGTGCA 59.439 45.455 18.09 8.44 35.25 4.57
236 237 3.195396 GTGTATTTTGACCATGGGTGCAT 59.805 43.478 18.09 3.90 35.25 3.96
238 239 5.068987 GTGTATTTTGACCATGGGTGCATAT 59.931 40.000 18.09 9.89 35.25 1.78
239 240 4.675976 ATTTTGACCATGGGTGCATATG 57.324 40.909 18.09 0.00 35.25 1.78
240 241 1.401761 TTGACCATGGGTGCATATGC 58.598 50.000 21.09 21.09 35.25 3.14
251 252 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
253 254 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
255 256 3.144506 CATATGCACCTAGGAGCCAAAG 58.855 50.000 25.94 11.57 0.00 2.77
256 257 1.289160 ATGCACCTAGGAGCCAAAGA 58.711 50.000 25.94 9.46 0.00 2.52
257 258 0.324943 TGCACCTAGGAGCCAAAGAC 59.675 55.000 25.94 0.15 0.00 3.01
258 259 0.324943 GCACCTAGGAGCCAAAGACA 59.675 55.000 19.57 0.00 0.00 3.41
259 260 1.271379 GCACCTAGGAGCCAAAGACAA 60.271 52.381 19.57 0.00 0.00 3.18
260 261 2.619074 GCACCTAGGAGCCAAAGACAAT 60.619 50.000 19.57 0.00 0.00 2.71
261 262 3.690460 CACCTAGGAGCCAAAGACAATT 58.310 45.455 17.98 0.00 0.00 2.32
262 263 4.843728 CACCTAGGAGCCAAAGACAATTA 58.156 43.478 17.98 0.00 0.00 1.40
264 265 4.200092 CCTAGGAGCCAAAGACAATTACC 58.800 47.826 1.05 0.00 0.00 2.85
265 266 2.711542 AGGAGCCAAAGACAATTACCG 58.288 47.619 0.00 0.00 0.00 4.02
361 363 8.902540 ATTTAGTGATCTGTTGTTTACACTCA 57.097 30.769 0.00 0.00 38.99 3.41
401 403 6.156949 ACCATACCATTCTTCTGATGTACACT 59.843 38.462 0.00 0.00 0.00 3.55
402 404 7.050377 CCATACCATTCTTCTGATGTACACTT 58.950 38.462 0.00 0.00 0.00 3.16
404 406 8.607459 CATACCATTCTTCTGATGTACACTTTC 58.393 37.037 0.00 0.00 0.00 2.62
406 408 6.652481 ACCATTCTTCTGATGTACACTTTCAG 59.348 38.462 15.82 15.82 0.00 3.02
408 410 7.148507 CCATTCTTCTGATGTACACTTTCAGTC 60.149 40.741 19.49 4.53 0.00 3.51
409 411 6.405278 TCTTCTGATGTACACTTTCAGTCA 57.595 37.500 19.49 8.41 0.00 3.41
410 412 6.816136 TCTTCTGATGTACACTTTCAGTCAA 58.184 36.000 19.49 10.25 0.00 3.18
411 413 6.925718 TCTTCTGATGTACACTTTCAGTCAAG 59.074 38.462 19.49 16.75 0.00 3.02
456 471 5.412526 TCTATTTTGAAACACGTGGACAC 57.587 39.130 21.57 8.75 0.00 3.67
485 500 9.696917 CTTTTGGTAGCCATGGATATTTTTATC 57.303 33.333 18.40 0.00 31.53 1.75
553 568 5.981088 TTGCATGTGATACAACTTCCATT 57.019 34.783 0.00 0.00 0.00 3.16
554 569 5.981088 TGCATGTGATACAACTTCCATTT 57.019 34.783 0.00 0.00 0.00 2.32
555 570 5.712004 TGCATGTGATACAACTTCCATTTG 58.288 37.500 0.00 0.00 0.00 2.32
556 571 4.563976 GCATGTGATACAACTTCCATTTGC 59.436 41.667 0.00 0.00 0.00 3.68
557 572 5.712004 CATGTGATACAACTTCCATTTGCA 58.288 37.500 0.00 0.00 0.00 4.08
560 575 5.301551 TGTGATACAACTTCCATTTGCAACT 59.698 36.000 0.00 0.00 0.00 3.16
561 576 5.858581 GTGATACAACTTCCATTTGCAACTC 59.141 40.000 0.00 0.00 0.00 3.01
562 577 5.769662 TGATACAACTTCCATTTGCAACTCT 59.230 36.000 0.00 0.00 0.00 3.24
594 630 4.491234 TTTCACCAATCGCGTAAACATT 57.509 36.364 5.77 0.00 0.00 2.71
601 637 7.061210 TCACCAATCGCGTAAACATTTTATTTG 59.939 33.333 5.77 0.00 0.00 2.32
649 691 7.651704 ACCCGAAACTATTTGAACAAAATTCAG 59.348 33.333 4.12 3.11 39.29 3.02
786 843 6.141560 TGAGAAATTACACAACACATTGCA 57.858 33.333 0.00 0.00 39.66 4.08
1112 1210 1.541672 CCCTCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1113 1211 1.541672 CCTCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1114 1212 0.998945 CCTCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1198 1314 4.399395 TCTCCAAGCAGCAGCCCG 62.399 66.667 0.00 0.00 43.56 6.13
1536 1652 1.397390 TAGGGTTCGATTCGAGGGGC 61.397 60.000 8.98 1.85 37.14 5.80
1575 1691 2.421248 GGAGGAGATCAGCAGGAAAAGG 60.421 54.545 0.00 0.00 0.00 3.11
1578 1694 2.025887 GGAGATCAGCAGGAAAAGGGAA 60.026 50.000 0.00 0.00 0.00 3.97
1579 1695 3.013219 GAGATCAGCAGGAAAAGGGAAC 58.987 50.000 0.00 0.00 0.00 3.62
1622 1738 2.745884 CGATGGCGTTGGCAGGAA 60.746 61.111 0.00 0.00 42.43 3.36
1641 1757 0.175302 ACAGAGAGAGCCTTGATGCG 59.825 55.000 0.00 0.00 36.02 4.73
1688 1804 2.719739 AGTGAGCTTGGATGTGAATGG 58.280 47.619 0.00 0.00 0.00 3.16
1822 1938 5.505286 CAAAGCTAGGCGATGAAATTAGTG 58.495 41.667 0.00 0.00 0.00 2.74
1850 1966 1.692042 AGGAGGGGCATGACCTGAG 60.692 63.158 19.55 0.00 38.79 3.35
1866 1982 3.843027 ACCTGAGACTGGTGAATGAGATT 59.157 43.478 0.00 0.00 34.44 2.40
1879 1995 7.890127 TGGTGAATGAGATTAGTTCCAAGAATT 59.110 33.333 0.00 0.00 0.00 2.17
1956 2072 0.901124 AGAGTGACTGTGATGGAGGC 59.099 55.000 0.00 0.00 0.00 4.70
1992 2108 0.653636 CTGTGTTTACCGTGCACGTT 59.346 50.000 34.81 26.08 37.74 3.99
2001 2117 0.318360 CCGTGCACGTTGTAGACTCA 60.318 55.000 34.81 0.00 37.74 3.41
2024 2140 3.201353 TGATGTTTGTTCGGGAGTGAA 57.799 42.857 0.00 0.00 0.00 3.18
2028 2144 3.611970 TGTTTGTTCGGGAGTGAAAGAA 58.388 40.909 0.00 0.00 0.00 2.52
2043 2159 5.595952 AGTGAAAGAACATCAAAAGAAGCCT 59.404 36.000 0.00 0.00 0.00 4.58
2061 2177 5.179452 AGCCTGAGGAGTTTAATAAGCAA 57.821 39.130 0.65 0.00 0.00 3.91
2121 2237 1.000938 GAGAAAGCAGCAACAAGTGGG 60.001 52.381 0.00 0.00 0.00 4.61
2132 2248 2.972021 CAACAAGTGGGGAGGGAAAATT 59.028 45.455 0.00 0.00 0.00 1.82
2391 2507 5.069648 TGAAGAGAACAGTGACTGTGAGATT 59.930 40.000 20.19 12.01 44.62 2.40
2411 2527 4.640771 TTTCTCATGCTAAGAAGGGTGT 57.359 40.909 0.00 0.00 34.42 4.16
2530 2646 7.667557 TCATAAACTATTGAGGGATCGTAAGG 58.332 38.462 0.00 0.00 38.47 2.69
2661 2780 5.654209 GGAATTTCTGGCTTCTTTAGATGGT 59.346 40.000 0.00 0.00 0.00 3.55
2712 2831 5.009010 CAGAGCTAAGAACTTGGAAAAGCAA 59.991 40.000 2.26 0.00 0.00 3.91
3074 3195 7.087409 TCCATAGTTTTGTGCACAGATAATG 57.913 36.000 20.59 18.58 0.00 1.90
3078 3199 8.853345 CATAGTTTTGTGCACAGATAATGTTTC 58.147 33.333 20.59 4.22 41.41 2.78
3080 3201 4.418013 TTGTGCACAGATAATGTTTCCG 57.582 40.909 20.59 0.00 41.41 4.30
3140 3261 8.043710 CAGTTCAAGTCTGAATATAAACCTCCT 58.956 37.037 0.00 0.00 43.39 3.69
3182 3303 1.106285 GGGGTGATTGCTGGTTGATC 58.894 55.000 0.00 0.00 0.00 2.92
3281 3402 3.931907 TGCAGCTGGGATTACTACAAT 57.068 42.857 17.12 0.00 0.00 2.71
3290 3411 6.926272 GCTGGGATTACTACAATAGAGAAGTG 59.074 42.308 0.00 0.00 0.00 3.16
3569 3690 1.751924 GAGTACTCCAGCCCACTACAG 59.248 57.143 12.13 0.00 0.00 2.74
3707 3828 3.951037 ACTGCCTTCATGTTAACAACACA 59.049 39.130 13.23 4.89 45.50 3.72
3743 3864 2.415625 CGGAGGAGTTCGTCAAAGGTAG 60.416 54.545 4.46 0.00 32.79 3.18
3758 3880 7.519970 CGTCAAAGGTAGCTTAAACAATCTTGT 60.520 37.037 7.76 0.00 44.72 3.16
3792 3914 7.756722 GCATTTCACTGTTCTGTTATTAATGCT 59.243 33.333 0.00 0.00 40.33 3.79
3875 4155 5.847265 TGGTTACTATGGGCCTATGATGTAA 59.153 40.000 12.67 14.22 0.00 2.41
3924 4204 3.355626 AAAGCTGAAACTTCGAAAGGC 57.644 42.857 0.00 0.00 0.00 4.35
3946 4226 7.398024 AGGCTACAAGTATCTGAAAACAGATT 58.602 34.615 16.03 3.17 41.65 2.40
3980 4260 0.678395 CTATGTGATCTGGCTCGGCT 59.322 55.000 0.00 0.00 0.00 5.52
4006 4286 6.037500 CCATCATTAACCTGTATGTGTCTGTG 59.962 42.308 0.00 0.00 0.00 3.66
4144 4424 3.110178 GGTGGAACGGCGAACTCG 61.110 66.667 16.62 0.00 38.12 4.18
4258 4538 1.615392 CTGAAAAAGGGGAGGCTTGTG 59.385 52.381 0.00 0.00 0.00 3.33
4712 4992 9.884465 GTTATGCCTATTGTATCTTGTTTCATC 57.116 33.333 0.00 0.00 0.00 2.92
4758 5038 0.380024 TGGATTGTTGCGTGTGTGTG 59.620 50.000 0.00 0.00 0.00 3.82
4780 5060 5.065731 GTGCCAAACCATTGTTCAAAATCAA 59.934 36.000 0.00 0.00 34.60 2.57
4793 5073 6.531594 TGTTCAAAATCAATTGTTGCGTTGTA 59.468 30.769 5.13 0.00 0.00 2.41
4794 5074 7.063426 TGTTCAAAATCAATTGTTGCGTTGTAA 59.937 29.630 5.13 0.00 0.00 2.41
4835 5115 9.844257 AATATTATCTTAGCATCAATCCCTAGC 57.156 33.333 0.00 0.00 0.00 3.42
4836 5116 6.686484 TTATCTTAGCATCAATCCCTAGCA 57.314 37.500 0.00 0.00 0.00 3.49
4837 5117 4.342862 TCTTAGCATCAATCCCTAGCAC 57.657 45.455 0.00 0.00 0.00 4.40
4838 5118 3.711190 TCTTAGCATCAATCCCTAGCACA 59.289 43.478 0.00 0.00 0.00 4.57
4839 5119 2.338577 AGCATCAATCCCTAGCACAC 57.661 50.000 0.00 0.00 0.00 3.82
4840 5120 1.561076 AGCATCAATCCCTAGCACACA 59.439 47.619 0.00 0.00 0.00 3.72
4841 5121 1.672881 GCATCAATCCCTAGCACACAC 59.327 52.381 0.00 0.00 0.00 3.82
4842 5122 2.940971 GCATCAATCCCTAGCACACACA 60.941 50.000 0.00 0.00 0.00 3.72
4866 5146 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4882 5162 4.821260 ACACACACACAGCTTAATCATCAA 59.179 37.500 0.00 0.00 0.00 2.57
4928 5208 6.358991 TCTATGCACATCAATCTTCAATGGA 58.641 36.000 0.00 0.00 0.00 3.41
5177 5457 1.312815 GGTATTGGGAGCATGCTGTC 58.687 55.000 28.27 16.99 0.00 3.51
5183 5463 0.250234 GGGAGCATGCTGTCACACTA 59.750 55.000 28.27 0.00 0.00 2.74
5191 5473 3.876274 TGCTGTCACACTATTCTCTCC 57.124 47.619 0.00 0.00 0.00 3.71
5272 5554 4.044336 TGAACTTGCCAACATTGTTCAG 57.956 40.909 6.03 0.00 40.98 3.02
5298 5580 1.034292 GTTCTCCAGCCTGCAATCCC 61.034 60.000 0.00 0.00 0.00 3.85
5301 5583 1.971505 CTCCAGCCTGCAATCCCGTA 61.972 60.000 0.00 0.00 0.00 4.02
5302 5584 1.149174 CCAGCCTGCAATCCCGTAT 59.851 57.895 0.00 0.00 0.00 3.06
5350 5639 7.565323 AAACTGAAGATATTGATTCCAGCTC 57.435 36.000 0.00 0.00 0.00 4.09
5361 5650 5.584253 TGATTCCAGCTCTACACTAGTTC 57.416 43.478 0.00 0.00 0.00 3.01
5392 5681 3.938963 TGTAGAAATTCCAATGTCCTCGC 59.061 43.478 0.00 0.00 0.00 5.03
5413 5702 1.337260 CGGATTATCTCCAAGGAGGCG 60.337 57.143 15.74 0.00 45.24 5.52
5601 5891 6.432783 TGGACAAAGTACAATACCATGGAAAG 59.567 38.462 21.47 7.71 0.00 2.62
5650 5940 2.828520 GAGATCATCCCGAAGCCATAGA 59.171 50.000 0.00 0.00 0.00 1.98
5654 5944 2.303022 TCATCCCGAAGCCATAGATTCC 59.697 50.000 0.00 0.00 34.85 3.01
5876 6166 7.764901 CCTCTATGTACCTTCTTAAACACTTCC 59.235 40.741 0.00 0.00 0.00 3.46
5885 6177 7.147897 ACCTTCTTAAACACTTCCAAGGAAAAG 60.148 37.037 2.78 3.16 34.26 2.27
6110 6415 5.241403 ACTCCATGTGTCTTAACAATGGA 57.759 39.130 15.33 15.33 43.28 3.41
6136 6442 5.932303 TCTGGAACATGTACAAGTTTAGCTC 59.068 40.000 16.86 4.85 38.20 4.09
6266 6589 0.038744 ACCTGGATCACAAGGCAAGG 59.961 55.000 0.00 0.00 0.00 3.61
6267 6590 1.318158 CCTGGATCACAAGGCAAGGC 61.318 60.000 0.00 0.00 0.00 4.35
6355 6689 4.642429 ACCTTGTAGAATGGTGAGAACAC 58.358 43.478 0.00 0.00 45.27 3.32
6422 8808 1.237285 ACACATTGAACGGGCAGAGC 61.237 55.000 0.00 0.00 0.00 4.09
6909 9487 7.466746 AGAACAGAGCTCTTATCTATGATCC 57.533 40.000 21.16 4.03 28.72 3.36
6910 9488 7.009550 AGAACAGAGCTCTTATCTATGATCCA 58.990 38.462 21.16 0.00 28.72 3.41
7048 9628 0.667993 ACAAATGTGCCCGTGAACAG 59.332 50.000 0.00 0.00 0.00 3.16
7117 9719 4.480115 CCATAGGTACATGGTAGGACTGA 58.520 47.826 0.00 0.00 40.62 3.41
7118 9720 4.899457 CCATAGGTACATGGTAGGACTGAA 59.101 45.833 0.00 0.00 40.62 3.02
7119 9721 5.544176 CCATAGGTACATGGTAGGACTGAAT 59.456 44.000 0.00 0.00 40.62 2.57
7120 9722 6.459066 CATAGGTACATGGTAGGACTGAATG 58.541 44.000 0.00 0.00 0.00 2.67
7122 9724 4.162320 AGGTACATGGTAGGACTGAATGTG 59.838 45.833 0.00 0.00 33.67 3.21
7202 9811 1.349688 TGCGGGTTGAGGTACTTCATT 59.650 47.619 8.68 0.00 41.55 2.57
7295 9909 3.316029 CCTGCTCGAAATTTCATGGCATA 59.684 43.478 21.48 7.86 0.00 3.14
7474 10095 1.535860 GCATTTTGTGTCAGTTGCCGT 60.536 47.619 0.00 0.00 0.00 5.68
7490 10111 1.535462 GCCGTCAGCAAACTACACATT 59.465 47.619 0.00 0.00 42.97 2.71
7525 10146 4.695014 TTTTTCCAGTGCTGCCCA 57.305 50.000 0.00 0.00 0.00 5.36
7526 10147 3.146218 TTTTTCCAGTGCTGCCCAT 57.854 47.368 0.00 0.00 0.00 4.00
7527 10148 2.300956 TTTTTCCAGTGCTGCCCATA 57.699 45.000 0.00 0.00 0.00 2.74
7528 10149 2.300956 TTTTCCAGTGCTGCCCATAA 57.699 45.000 0.00 0.00 0.00 1.90
7529 10150 2.300956 TTTCCAGTGCTGCCCATAAA 57.699 45.000 0.00 0.00 0.00 1.40
7530 10151 2.530460 TTCCAGTGCTGCCCATAAAT 57.470 45.000 0.00 0.00 0.00 1.40
7531 10152 2.057137 TCCAGTGCTGCCCATAAATC 57.943 50.000 0.00 0.00 0.00 2.17
7532 10153 1.284491 TCCAGTGCTGCCCATAAATCA 59.716 47.619 0.00 0.00 0.00 2.57
7533 10154 1.406539 CCAGTGCTGCCCATAAATCAC 59.593 52.381 0.00 0.00 0.00 3.06
7534 10155 2.372264 CAGTGCTGCCCATAAATCACT 58.628 47.619 0.00 0.00 35.42 3.41
7535 10156 3.544684 CAGTGCTGCCCATAAATCACTA 58.455 45.455 0.00 0.00 33.93 2.74
7536 10157 3.562973 CAGTGCTGCCCATAAATCACTAG 59.437 47.826 0.00 0.00 33.93 2.57
7537 10158 2.880890 GTGCTGCCCATAAATCACTAGG 59.119 50.000 0.00 0.00 0.00 3.02
7538 10159 2.509548 TGCTGCCCATAAATCACTAGGT 59.490 45.455 0.00 0.00 0.00 3.08
7539 10160 2.880890 GCTGCCCATAAATCACTAGGTG 59.119 50.000 0.00 0.00 34.45 4.00
7540 10161 3.685550 GCTGCCCATAAATCACTAGGTGT 60.686 47.826 0.00 0.00 34.79 4.16
7542 10163 2.618709 GCCCATAAATCACTAGGTGTGC 59.381 50.000 0.00 0.00 45.81 4.57
7543 10164 3.685550 GCCCATAAATCACTAGGTGTGCT 60.686 47.826 0.00 0.00 45.81 4.40
7544 10165 4.444306 GCCCATAAATCACTAGGTGTGCTA 60.444 45.833 0.00 0.00 45.81 3.49
7545 10166 5.746065 GCCCATAAATCACTAGGTGTGCTAT 60.746 44.000 0.00 0.00 45.81 2.97
7546 10167 6.520061 GCCCATAAATCACTAGGTGTGCTATA 60.520 42.308 0.00 0.00 45.81 1.31
7547 10168 7.624549 CCCATAAATCACTAGGTGTGCTATAT 58.375 38.462 0.00 0.00 45.81 0.86
7548 10169 7.766278 CCCATAAATCACTAGGTGTGCTATATC 59.234 40.741 0.00 0.00 45.81 1.63
7549 10170 8.535335 CCATAAATCACTAGGTGTGCTATATCT 58.465 37.037 0.00 0.00 45.81 1.98
7550 10171 9.363763 CATAAATCACTAGGTGTGCTATATCTG 57.636 37.037 0.00 0.00 45.81 2.90
7551 10172 4.855715 TCACTAGGTGTGCTATATCTGC 57.144 45.455 0.00 0.00 45.81 4.26
7552 10173 4.215109 TCACTAGGTGTGCTATATCTGCA 58.785 43.478 0.00 0.00 45.81 4.41
7553 10174 4.279420 TCACTAGGTGTGCTATATCTGCAG 59.721 45.833 7.63 7.63 45.81 4.41
7554 10175 2.540265 AGGTGTGCTATATCTGCAGC 57.460 50.000 9.47 0.00 41.41 5.25
7555 10176 2.045524 AGGTGTGCTATATCTGCAGCT 58.954 47.619 9.47 0.82 41.41 4.24
7556 10177 2.141517 GGTGTGCTATATCTGCAGCTG 58.858 52.381 10.11 10.11 41.41 4.24
7557 10178 1.530293 GTGTGCTATATCTGCAGCTGC 59.470 52.381 31.89 31.89 41.41 5.25
7558 10179 1.155042 GTGCTATATCTGCAGCTGCC 58.845 55.000 34.64 17.42 41.41 4.85
7559 10180 0.035881 TGCTATATCTGCAGCTGCCC 59.964 55.000 34.64 10.46 41.18 5.36
7560 10181 0.035881 GCTATATCTGCAGCTGCCCA 59.964 55.000 34.64 21.76 41.18 5.36
7561 10182 1.339824 GCTATATCTGCAGCTGCCCAT 60.340 52.381 34.64 26.44 41.18 4.00
7562 10183 2.878935 GCTATATCTGCAGCTGCCCATT 60.879 50.000 34.64 19.08 41.18 3.16
7563 10184 1.906990 ATATCTGCAGCTGCCCATTC 58.093 50.000 34.64 8.07 41.18 2.67
7564 10185 0.547553 TATCTGCAGCTGCCCATTCA 59.452 50.000 34.64 14.99 41.18 2.57
7565 10186 1.035932 ATCTGCAGCTGCCCATTCAC 61.036 55.000 34.64 6.50 41.18 3.18
7566 10187 1.677966 CTGCAGCTGCCCATTCACT 60.678 57.895 34.64 0.00 41.18 3.41
7567 10188 0.393402 CTGCAGCTGCCCATTCACTA 60.393 55.000 34.64 12.69 41.18 2.74
7568 10189 0.393402 TGCAGCTGCCCATTCACTAG 60.393 55.000 34.64 0.00 41.18 2.57
7569 10190 0.107508 GCAGCTGCCCATTCACTAGA 60.108 55.000 28.76 0.00 34.31 2.43
7570 10191 1.679944 GCAGCTGCCCATTCACTAGAA 60.680 52.381 28.76 0.00 34.83 2.10
7571 10192 2.012673 CAGCTGCCCATTCACTAGAAC 58.987 52.381 0.00 0.00 36.39 3.01
7572 10193 1.065126 AGCTGCCCATTCACTAGAACC 60.065 52.381 0.00 0.00 36.39 3.62
7573 10194 1.340017 GCTGCCCATTCACTAGAACCA 60.340 52.381 0.00 0.00 36.39 3.67
7574 10195 2.359900 CTGCCCATTCACTAGAACCAC 58.640 52.381 0.00 0.00 36.39 4.16
7575 10196 1.702401 TGCCCATTCACTAGAACCACA 59.298 47.619 0.00 0.00 36.39 4.17
7576 10197 2.084546 GCCCATTCACTAGAACCACAC 58.915 52.381 0.00 0.00 36.39 3.82
7577 10198 2.552155 GCCCATTCACTAGAACCACACA 60.552 50.000 0.00 0.00 36.39 3.72
7578 10199 3.338249 CCCATTCACTAGAACCACACAG 58.662 50.000 0.00 0.00 36.39 3.66
7579 10200 3.007940 CCCATTCACTAGAACCACACAGA 59.992 47.826 0.00 0.00 36.39 3.41
7580 10201 4.323792 CCCATTCACTAGAACCACACAGAT 60.324 45.833 0.00 0.00 36.39 2.90
7581 10202 4.872691 CCATTCACTAGAACCACACAGATC 59.127 45.833 0.00 0.00 36.39 2.75
7582 10203 5.482006 CATTCACTAGAACCACACAGATCA 58.518 41.667 0.00 0.00 36.39 2.92
7583 10204 4.521130 TCACTAGAACCACACAGATCAC 57.479 45.455 0.00 0.00 0.00 3.06
7584 10205 4.152647 TCACTAGAACCACACAGATCACT 58.847 43.478 0.00 0.00 0.00 3.41
7585 10206 5.321927 TCACTAGAACCACACAGATCACTA 58.678 41.667 0.00 0.00 0.00 2.74
7586 10207 5.416013 TCACTAGAACCACACAGATCACTAG 59.584 44.000 0.00 0.00 34.30 2.57
7587 10208 3.601443 AGAACCACACAGATCACTAGC 57.399 47.619 0.00 0.00 0.00 3.42
7588 10209 3.169099 AGAACCACACAGATCACTAGCT 58.831 45.455 0.00 0.00 0.00 3.32
7589 10210 3.056250 AGAACCACACAGATCACTAGCTG 60.056 47.826 0.00 0.00 44.88 4.24
7590 10211 2.529632 ACCACACAGATCACTAGCTGA 58.470 47.619 0.00 0.58 41.85 4.26
7591 10212 2.495270 ACCACACAGATCACTAGCTGAG 59.505 50.000 0.00 0.00 41.85 3.35
7592 10213 2.538437 CACACAGATCACTAGCTGAGC 58.462 52.381 0.00 0.00 41.85 4.26
7597 10218 1.136695 AGATCACTAGCTGAGCTGTGC 59.863 52.381 18.79 10.87 44.28 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.768468 TTTCACCGAAACCTTGTGAAC 57.232 42.857 3.97 0.00 45.68 3.18
1 2 4.487019 GTTTTTCACCGAAACCTTGTGAA 58.513 39.130 0.00 0.00 44.70 3.18
3 4 2.849473 CGTTTTTCACCGAAACCTTGTG 59.151 45.455 0.00 0.00 34.35 3.33
4 5 2.748532 TCGTTTTTCACCGAAACCTTGT 59.251 40.909 0.00 0.00 34.35 3.16
5 6 3.408288 TCGTTTTTCACCGAAACCTTG 57.592 42.857 0.00 0.00 34.35 3.61
6 7 3.441222 ACTTCGTTTTTCACCGAAACCTT 59.559 39.130 0.00 0.00 41.93 3.50
7 8 3.011818 ACTTCGTTTTTCACCGAAACCT 58.988 40.909 0.00 0.00 41.93 3.50
8 9 3.409851 ACTTCGTTTTTCACCGAAACC 57.590 42.857 0.00 0.00 41.93 3.27
9 10 5.750484 AAAACTTCGTTTTTCACCGAAAC 57.250 34.783 0.00 0.00 42.11 2.78
50 51 8.814038 ACTATTCACAAGGCATTTCTTTATCT 57.186 30.769 0.00 0.00 0.00 1.98
53 54 9.733556 TCTAACTATTCACAAGGCATTTCTTTA 57.266 29.630 0.00 0.00 0.00 1.85
54 55 8.635765 TCTAACTATTCACAAGGCATTTCTTT 57.364 30.769 0.00 0.00 0.00 2.52
55 56 8.635765 TTCTAACTATTCACAAGGCATTTCTT 57.364 30.769 0.00 0.00 0.00 2.52
56 57 8.680903 CATTCTAACTATTCACAAGGCATTTCT 58.319 33.333 0.00 0.00 0.00 2.52
58 59 8.579850 TCATTCTAACTATTCACAAGGCATTT 57.420 30.769 0.00 0.00 0.00 2.32
59 60 8.579850 TTCATTCTAACTATTCACAAGGCATT 57.420 30.769 0.00 0.00 0.00 3.56
60 61 7.201767 GCTTCATTCTAACTATTCACAAGGCAT 60.202 37.037 0.00 0.00 0.00 4.40
61 62 6.094048 GCTTCATTCTAACTATTCACAAGGCA 59.906 38.462 0.00 0.00 0.00 4.75
63 64 7.615582 TGCTTCATTCTAACTATTCACAAGG 57.384 36.000 0.00 0.00 0.00 3.61
64 65 8.886719 TGATGCTTCATTCTAACTATTCACAAG 58.113 33.333 0.00 0.00 0.00 3.16
67 68 8.654230 TCTGATGCTTCATTCTAACTATTCAC 57.346 34.615 2.33 0.00 0.00 3.18
68 69 9.671279 TTTCTGATGCTTCATTCTAACTATTCA 57.329 29.630 2.33 0.00 0.00 2.57
118 119 6.871492 AGGTTTCAGTGAAAAACGATGTTTTT 59.129 30.769 19.63 17.47 37.46 1.94
119 120 6.394809 AGGTTTCAGTGAAAAACGATGTTTT 58.605 32.000 19.63 2.00 37.46 2.43
122 123 5.105917 ACAAGGTTTCAGTGAAAAACGATGT 60.106 36.000 19.63 19.21 37.46 3.06
123 124 5.229887 CACAAGGTTTCAGTGAAAAACGATG 59.770 40.000 19.63 18.71 37.46 3.84
124 125 5.339990 CACAAGGTTTCAGTGAAAAACGAT 58.660 37.500 19.63 8.08 37.46 3.73
126 127 3.303229 GCACAAGGTTTCAGTGAAAAACG 59.697 43.478 19.63 11.00 37.46 3.60
127 128 4.091365 GTGCACAAGGTTTCAGTGAAAAAC 59.909 41.667 19.63 15.06 33.14 2.43
128 129 4.241681 GTGCACAAGGTTTCAGTGAAAAA 58.758 39.130 19.63 0.00 33.14 1.94
131 132 1.400142 CGTGCACAAGGTTTCAGTGAA 59.600 47.619 18.64 0.08 35.33 3.18
134 135 1.029408 TGCGTGCACAAGGTTTCAGT 61.029 50.000 18.64 0.00 0.00 3.41
135 136 0.592247 GTGCGTGCACAAGGTTTCAG 60.592 55.000 19.45 0.00 45.53 3.02
136 137 1.431440 GTGCGTGCACAAGGTTTCA 59.569 52.632 19.45 0.00 45.53 2.69
137 138 4.302154 GTGCGTGCACAAGGTTTC 57.698 55.556 19.45 0.00 45.53 2.78
153 154 6.292649 CGTGTGTATATCCGCACATTTTATGT 60.293 38.462 11.86 0.00 45.65 2.29
154 155 6.070829 CGTGTGTATATCCGCACATTTTATG 58.929 40.000 11.86 0.00 45.65 1.90
155 156 5.178623 CCGTGTGTATATCCGCACATTTTAT 59.821 40.000 11.86 0.00 45.65 1.40
156 157 4.508492 CCGTGTGTATATCCGCACATTTTA 59.492 41.667 11.86 0.00 45.65 1.52
157 158 3.311322 CCGTGTGTATATCCGCACATTTT 59.689 43.478 11.86 0.00 45.65 1.82
158 159 2.869801 CCGTGTGTATATCCGCACATTT 59.130 45.455 11.86 0.00 45.65 2.32
159 160 2.479837 CCGTGTGTATATCCGCACATT 58.520 47.619 11.86 0.00 45.65 2.71
161 162 0.103390 CCCGTGTGTATATCCGCACA 59.897 55.000 11.86 7.89 44.19 4.57
162 163 0.386476 TCCCGTGTGTATATCCGCAC 59.614 55.000 2.08 2.08 41.35 5.34
163 164 1.334160 ATCCCGTGTGTATATCCGCA 58.666 50.000 0.00 0.00 0.00 5.69
165 166 4.573201 ACAAAAATCCCGTGTGTATATCCG 59.427 41.667 0.00 0.00 0.00 4.18
166 167 6.445357 AACAAAAATCCCGTGTGTATATCC 57.555 37.500 0.00 0.00 0.00 2.59
167 168 6.492254 GGAACAAAAATCCCGTGTGTATATC 58.508 40.000 0.00 0.00 0.00 1.63
168 169 5.065474 CGGAACAAAAATCCCGTGTGTATAT 59.935 40.000 0.00 0.00 37.40 0.86
170 171 3.189702 CGGAACAAAAATCCCGTGTGTAT 59.810 43.478 0.00 0.00 37.40 2.29
171 172 2.548904 CGGAACAAAAATCCCGTGTGTA 59.451 45.455 0.00 0.00 37.40 2.90
174 175 1.970092 TCGGAACAAAAATCCCGTGT 58.030 45.000 0.00 0.00 42.34 4.49
175 176 3.569250 ATTCGGAACAAAAATCCCGTG 57.431 42.857 0.00 0.00 42.34 4.94
176 177 4.594123 AAATTCGGAACAAAAATCCCGT 57.406 36.364 0.00 0.00 42.34 5.28
177 178 5.463724 TGAAAAATTCGGAACAAAAATCCCG 59.536 36.000 0.00 0.00 43.02 5.14
178 179 6.852858 TGAAAAATTCGGAACAAAAATCCC 57.147 33.333 0.00 0.00 33.13 3.85
179 180 7.915508 AGTTGAAAAATTCGGAACAAAAATCC 58.084 30.769 0.00 0.00 0.00 3.01
180 181 9.767684 AAAGTTGAAAAATTCGGAACAAAAATC 57.232 25.926 0.00 0.00 30.03 2.17
182 183 9.600646 GAAAAGTTGAAAAATTCGGAACAAAAA 57.399 25.926 0.00 0.00 30.03 1.94
183 184 7.952637 CGAAAAGTTGAAAAATTCGGAACAAAA 59.047 29.630 0.00 0.00 30.03 2.44
184 185 7.328737 TCGAAAAGTTGAAAAATTCGGAACAAA 59.671 29.630 6.40 0.00 38.43 2.83
185 186 6.807230 TCGAAAAGTTGAAAAATTCGGAACAA 59.193 30.769 6.40 0.00 38.43 2.83
186 187 6.323266 TCGAAAAGTTGAAAAATTCGGAACA 58.677 32.000 6.40 0.00 38.43 3.18
188 189 7.813852 TTTCGAAAAGTTGAAAAATTCGGAA 57.186 28.000 8.44 0.00 38.43 4.30
189 190 7.489757 ACATTTCGAAAAGTTGAAAAATTCGGA 59.510 29.630 15.66 0.00 38.43 4.55
190 191 7.578736 CACATTTCGAAAAGTTGAAAAATTCGG 59.421 33.333 15.58 0.00 38.43 4.30
191 192 8.107564 ACACATTTCGAAAAGTTGAAAAATTCG 58.892 29.630 15.58 4.14 38.90 3.34
198 199 9.574458 TCAAAATACACATTTCGAAAAGTTGAA 57.426 25.926 15.58 5.42 33.09 2.69
199 200 9.015577 GTCAAAATACACATTTCGAAAAGTTGA 57.984 29.630 15.58 12.60 33.09 3.18
200 201 8.265998 GGTCAAAATACACATTTCGAAAAGTTG 58.734 33.333 15.58 11.62 33.09 3.16
201 202 7.976734 TGGTCAAAATACACATTTCGAAAAGTT 59.023 29.630 15.58 10.12 33.09 2.66
202 203 7.484975 TGGTCAAAATACACATTTCGAAAAGT 58.515 30.769 15.66 14.06 33.09 2.66
203 204 7.922505 TGGTCAAAATACACATTTCGAAAAG 57.077 32.000 15.66 13.33 33.09 2.27
205 206 6.865726 CCATGGTCAAAATACACATTTCGAAA 59.134 34.615 13.91 13.91 33.09 3.46
206 207 6.385843 CCATGGTCAAAATACACATTTCGAA 58.614 36.000 2.57 0.00 33.09 3.71
207 208 5.105957 CCCATGGTCAAAATACACATTTCGA 60.106 40.000 11.73 0.00 33.09 3.71
208 209 5.101628 CCCATGGTCAAAATACACATTTCG 58.898 41.667 11.73 0.00 33.09 3.46
209 210 5.868801 CACCCATGGTCAAAATACACATTTC 59.131 40.000 11.73 0.00 30.63 2.17
210 211 5.792741 CACCCATGGTCAAAATACACATTT 58.207 37.500 11.73 0.00 32.32 2.32
211 212 4.322650 GCACCCATGGTCAAAATACACATT 60.323 41.667 11.73 0.00 31.02 2.71
216 217 5.531634 CATATGCACCCATGGTCAAAATAC 58.468 41.667 11.73 0.00 31.02 1.89
218 219 3.181463 GCATATGCACCCATGGTCAAAAT 60.181 43.478 22.84 0.35 41.59 1.82
221 222 1.401761 GCATATGCACCCATGGTCAA 58.598 50.000 22.84 0.00 41.59 3.18
222 223 3.114527 GCATATGCACCCATGGTCA 57.885 52.632 22.84 6.02 41.59 4.02
233 234 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
235 236 3.048600 TCTTTGGCTCCTAGGTGCATAT 58.951 45.455 31.19 0.00 36.47 1.78
236 237 2.170607 GTCTTTGGCTCCTAGGTGCATA 59.829 50.000 31.19 19.50 36.47 3.14
238 239 0.324943 GTCTTTGGCTCCTAGGTGCA 59.675 55.000 31.19 17.76 36.47 4.57
239 240 0.324943 TGTCTTTGGCTCCTAGGTGC 59.675 55.000 24.68 24.68 0.00 5.01
240 241 2.859165 TTGTCTTTGGCTCCTAGGTG 57.141 50.000 9.08 7.68 0.00 4.00
241 242 4.324331 GGTAATTGTCTTTGGCTCCTAGGT 60.324 45.833 9.08 0.00 0.00 3.08
242 243 4.200092 GGTAATTGTCTTTGGCTCCTAGG 58.800 47.826 0.82 0.82 0.00 3.02
244 245 3.262405 ACGGTAATTGTCTTTGGCTCCTA 59.738 43.478 0.00 0.00 0.00 2.94
245 246 2.039879 ACGGTAATTGTCTTTGGCTCCT 59.960 45.455 0.00 0.00 0.00 3.69
246 247 2.433436 ACGGTAATTGTCTTTGGCTCC 58.567 47.619 0.00 0.00 0.00 4.70
248 249 7.012989 GGAATAATACGGTAATTGTCTTTGGCT 59.987 37.037 0.00 0.00 0.00 4.75
249 250 7.136772 GGAATAATACGGTAATTGTCTTTGGC 58.863 38.462 0.00 0.00 0.00 4.52
250 251 8.215926 TGGAATAATACGGTAATTGTCTTTGG 57.784 34.615 0.00 0.00 0.00 3.28
251 252 9.498307 GTTGGAATAATACGGTAATTGTCTTTG 57.502 33.333 0.00 0.00 0.00 2.77
253 254 8.050930 AGGTTGGAATAATACGGTAATTGTCTT 58.949 33.333 0.00 0.00 0.00 3.01
255 256 7.797038 AGGTTGGAATAATACGGTAATTGTC 57.203 36.000 0.00 0.00 0.00 3.18
256 257 8.584063 AAAGGTTGGAATAATACGGTAATTGT 57.416 30.769 0.00 0.00 0.00 2.71
257 258 9.863845 AAAAAGGTTGGAATAATACGGTAATTG 57.136 29.630 0.00 0.00 0.00 2.32
259 260 9.245481 TGAAAAAGGTTGGAATAATACGGTAAT 57.755 29.630 0.00 0.00 0.00 1.89
260 261 8.632906 TGAAAAAGGTTGGAATAATACGGTAA 57.367 30.769 0.00 0.00 0.00 2.85
261 262 8.810990 ATGAAAAAGGTTGGAATAATACGGTA 57.189 30.769 0.00 0.00 0.00 4.02
262 263 7.712204 ATGAAAAAGGTTGGAATAATACGGT 57.288 32.000 0.00 0.00 0.00 4.83
346 348 6.055231 TCCGAAAATGAGTGTAAACAACAG 57.945 37.500 0.00 0.00 39.29 3.16
361 363 7.654022 ATGGTATGGTGTTTAATCCGAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
456 471 6.966534 AATATCCATGGCTACCAAAAGAAG 57.033 37.500 6.96 0.00 36.95 2.85
522 537 9.539825 AAGTTGTATCACATGCAAACATTTTTA 57.460 25.926 0.00 0.00 36.64 1.52
526 541 6.158598 GGAAGTTGTATCACATGCAAACATT 58.841 36.000 0.00 0.00 36.64 2.71
537 552 5.772521 AGTTGCAAATGGAAGTTGTATCAC 58.227 37.500 0.00 0.00 45.01 3.06
556 571 4.682860 GGTGAAATGTGATTTGCAGAGTTG 59.317 41.667 0.00 0.00 27.51 3.16
557 572 4.341806 TGGTGAAATGTGATTTGCAGAGTT 59.658 37.500 0.00 0.00 30.22 3.01
560 575 4.933505 TTGGTGAAATGTGATTTGCAGA 57.066 36.364 0.00 0.00 31.47 4.26
561 576 4.325204 CGATTGGTGAAATGTGATTTGCAG 59.675 41.667 0.00 0.00 31.47 4.41
562 577 4.236147 CGATTGGTGAAATGTGATTTGCA 58.764 39.130 0.00 0.00 31.47 4.08
564 579 3.301379 CGCGATTGGTGAAATGTGATTTG 59.699 43.478 0.00 0.00 31.47 2.32
565 580 3.057596 ACGCGATTGGTGAAATGTGATTT 60.058 39.130 15.93 0.00 34.64 2.17
566 581 2.487762 ACGCGATTGGTGAAATGTGATT 59.512 40.909 15.93 0.00 0.00 2.57
569 584 3.463533 TTACGCGATTGGTGAAATGTG 57.536 42.857 15.93 0.00 0.00 3.21
570 585 3.251245 TGTTTACGCGATTGGTGAAATGT 59.749 39.130 15.93 0.00 0.00 2.71
571 586 3.816091 TGTTTACGCGATTGGTGAAATG 58.184 40.909 15.93 0.00 0.00 2.32
572 587 4.695217 ATGTTTACGCGATTGGTGAAAT 57.305 36.364 15.93 0.00 0.00 2.17
621 663 8.725405 AATTTTGTTCAAATAGTTTCGGGTTT 57.275 26.923 0.00 0.00 33.60 3.27
622 664 7.982354 TGAATTTTGTTCAAATAGTTTCGGGTT 59.018 29.630 0.00 0.00 33.60 4.11
623 665 7.493367 TGAATTTTGTTCAAATAGTTTCGGGT 58.507 30.769 0.00 0.00 33.60 5.28
624 666 7.865385 TCTGAATTTTGTTCAAATAGTTTCGGG 59.135 33.333 0.00 0.98 33.60 5.14
775 832 1.373246 CGCCCCTTGCAATGTGTTG 60.373 57.895 0.00 0.00 41.33 3.33
1557 1673 1.561542 TCCCTTTTCCTGCTGATCTCC 59.438 52.381 0.00 0.00 0.00 3.71
1622 1738 0.175302 CGCATCAAGGCTCTCTCTGT 59.825 55.000 0.00 0.00 0.00 3.41
1641 1757 1.005340 CACTGATCTGCTTCGGCTTC 58.995 55.000 0.00 0.00 42.37 3.86
1688 1804 1.888512 ACACATCACATTGCTTCACCC 59.111 47.619 0.00 0.00 0.00 4.61
1730 1846 3.461061 TGCTTCTTCACAGTCAAGTCAG 58.539 45.455 0.00 0.00 0.00 3.51
1736 1852 2.695147 TCACTCTGCTTCTTCACAGTCA 59.305 45.455 0.00 0.00 35.37 3.41
1737 1853 3.377346 TCACTCTGCTTCTTCACAGTC 57.623 47.619 0.00 0.00 35.37 3.51
1739 1855 3.922910 TCATCACTCTGCTTCTTCACAG 58.077 45.455 0.00 0.00 35.15 3.66
1822 1938 3.002371 CCCCTCCTCTTGCTTCCC 58.998 66.667 0.00 0.00 0.00 3.97
1850 1966 5.734720 TGGAACTAATCTCATTCACCAGTC 58.265 41.667 0.00 0.00 0.00 3.51
1866 1982 5.362430 ACCAGCAACAAAATTCTTGGAACTA 59.638 36.000 0.00 0.00 0.00 2.24
1879 1995 3.290948 ACCAGTAAGACCAGCAACAAA 57.709 42.857 0.00 0.00 0.00 2.83
1929 2045 1.480498 TCACAGTCACTCTGGGTAGCA 60.480 52.381 0.00 0.00 46.77 3.49
1941 2057 1.297689 GCTGCCTCCATCACAGTCA 59.702 57.895 0.00 0.00 33.87 3.41
1944 2060 0.322277 AACTGCTGCCTCCATCACAG 60.322 55.000 0.00 0.00 34.48 3.66
1992 2108 5.863935 CGAACAAACATCATCTGAGTCTACA 59.136 40.000 0.00 0.00 0.00 2.74
2001 2117 3.007940 TCACTCCCGAACAAACATCATCT 59.992 43.478 0.00 0.00 0.00 2.90
2024 2140 4.522022 CCTCAGGCTTCTTTTGATGTTCTT 59.478 41.667 0.00 0.00 0.00 2.52
2028 2144 3.073650 ACTCCTCAGGCTTCTTTTGATGT 59.926 43.478 0.00 0.00 0.00 3.06
2043 2159 6.440647 TCTCTCCTTGCTTATTAAACTCCTCA 59.559 38.462 0.00 0.00 0.00 3.86
2061 2177 1.286257 GCCAATTTCCCCTTCTCTCCT 59.714 52.381 0.00 0.00 0.00 3.69
2121 2237 4.955811 AGTTTTCACCAATTTTCCCTCC 57.044 40.909 0.00 0.00 0.00 4.30
2132 2248 2.560542 ACACTGCACAAAGTTTTCACCA 59.439 40.909 0.00 0.00 0.00 4.17
2373 2489 5.837586 GAGAAATCTCACAGTCACTGTTC 57.162 43.478 8.05 1.96 43.43 3.18
2391 2507 3.582647 TCACACCCTTCTTAGCATGAGAA 59.417 43.478 0.00 0.00 0.00 2.87
2411 2527 2.297315 ACGACAGCAGATTTCTCACTCA 59.703 45.455 0.00 0.00 0.00 3.41
2442 2558 2.099141 TTCCAGCATTCTTCAGGTCG 57.901 50.000 0.00 0.00 0.00 4.79
2530 2646 2.615869 CTCCTGTTGAGTAGCAGAAGC 58.384 52.381 0.00 0.00 37.32 3.86
2661 2780 4.895889 TCCTTGAAGAAGTCACTCTCTTCA 59.104 41.667 19.96 19.96 44.40 3.02
2712 2831 4.744570 CATCTGCTGCTTCACAAATCATT 58.255 39.130 0.00 0.00 0.00 2.57
3042 3163 8.586570 TGTGCACAAAACTATGGAAATAAAAG 57.413 30.769 19.28 0.00 0.00 2.27
3074 3195 3.003275 TGAATCAGCACTTGAACGGAAAC 59.997 43.478 0.00 0.00 39.77 2.78
3078 3199 3.837213 ATTGAATCAGCACTTGAACGG 57.163 42.857 0.00 0.00 39.77 4.44
3182 3303 2.367202 ATCTACACCTGGGGCACGG 61.367 63.158 0.00 0.00 0.00 4.94
3281 3402 5.556355 CATGAAATGCTTGCACTTCTCTA 57.444 39.130 15.95 0.00 37.62 2.43
3509 3630 4.016444 TGCTTACTTCCCATTTCATCACC 58.984 43.478 0.00 0.00 0.00 4.02
3569 3690 3.682292 CTTCCCCCTGCTACGCCAC 62.682 68.421 0.00 0.00 0.00 5.01
3707 3828 3.790437 CCGCCCACCTCAGCATCT 61.790 66.667 0.00 0.00 0.00 2.90
3743 3864 7.138736 TGCAGTTAAGACAAGATTGTTTAAGC 58.861 34.615 0.00 7.98 42.43 3.09
3758 3880 5.822519 ACAGAACAGTGAAATGCAGTTAAGA 59.177 36.000 0.00 0.00 0.00 2.10
3875 4155 7.834881 ATGATCAGGACAAATATCAAATGCT 57.165 32.000 0.09 0.00 32.47 3.79
3980 4260 6.070251 ACAGACACATACAGGTTAATGATGGA 60.070 38.462 0.00 0.00 0.00 3.41
4006 4286 4.451096 TCGGATGAACTAACTCTGCAAAAC 59.549 41.667 0.00 0.00 0.00 2.43
4258 4538 3.139077 CTCCGGTAATTCATAGGTTGCC 58.861 50.000 0.00 0.00 0.00 4.52
4522 4802 1.227383 GTACCTCCAATGGGCTGGG 59.773 63.158 0.00 0.00 37.06 4.45
4712 4992 5.782893 TGGGGAAGAACACAAAATAACAG 57.217 39.130 0.00 0.00 0.00 3.16
4748 5028 2.278531 GGTTTGGCACACACACGC 60.279 61.111 6.08 0.00 41.41 5.34
4750 5030 1.134848 ACAATGGTTTGGCACACACAC 60.135 47.619 6.08 0.00 41.41 3.82
4758 5038 5.747951 TTGATTTTGAACAATGGTTTGGC 57.252 34.783 0.00 0.00 37.36 4.52
4780 5060 7.804129 ACGTGTTAATATTTACAACGCAACAAT 59.196 29.630 19.66 6.18 33.36 2.71
4820 5100 1.561076 TGTGTGCTAGGGATTGATGCT 59.439 47.619 0.00 0.00 0.00 3.79
4835 5115 1.265365 TGTGTGTGTGTGTTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4836 5116 1.265635 GTGTGTGTGTGTGTTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4837 5117 1.265365 TGTGTGTGTGTGTGTTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4838 5118 1.265635 GTGTGTGTGTGTGTGTTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4839 5119 1.265365 TGTGTGTGTGTGTGTGTTGTG 59.735 47.619 0.00 0.00 0.00 3.33
4840 5120 1.265635 GTGTGTGTGTGTGTGTGTTGT 59.734 47.619 0.00 0.00 0.00 3.32
4841 5121 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
4842 5122 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
4866 5146 5.706916 AGCTTTGTTGATGATTAAGCTGTG 58.293 37.500 6.83 0.00 46.95 3.66
4928 5208 1.298382 AGGGGGTAGGATCCTCATTGT 59.702 52.381 20.22 0.00 0.00 2.71
5108 5388 2.457598 TGGTTGAGCTGACCCTAGTAG 58.542 52.381 12.16 0.00 36.30 2.57
5177 5457 6.378710 TGATTAGACGGAGAGAATAGTGTG 57.621 41.667 0.00 0.00 0.00 3.82
5183 5463 6.571344 CGGATTGATGATTAGACGGAGAGAAT 60.571 42.308 0.00 0.00 0.00 2.40
5191 5473 4.738252 TCGAAACGGATTGATGATTAGACG 59.262 41.667 0.00 0.00 0.00 4.18
5272 5554 0.951040 CAGGCTGGAGAACGAACACC 60.951 60.000 6.61 0.00 0.00 4.16
5298 5580 8.183830 TGTTTTTGTTATAACTCGGGTATACG 57.816 34.615 16.33 0.00 0.00 3.06
5350 5639 8.289939 TCTACAGGTATTTGGAACTAGTGTAG 57.710 38.462 0.00 0.00 37.34 2.74
5361 5650 8.066612 ACATTGGAATTTCTACAGGTATTTGG 57.933 34.615 0.00 0.00 0.00 3.28
5413 5702 0.465278 GCCTGCTGGATTTCTCCCTC 60.465 60.000 14.77 0.00 41.29 4.30
5570 5860 5.995282 TGGTATTGTACTTTGTCCAACTGAG 59.005 40.000 0.00 0.00 0.00 3.35
5601 5891 5.850614 TGAAGAACAAGTTCACCTACTACC 58.149 41.667 14.69 0.00 41.84 3.18
5650 5940 6.153510 GCTTTTTCACTCCCAAATCTAGGAAT 59.846 38.462 0.00 0.00 0.00 3.01
5654 5944 4.158579 GGGCTTTTTCACTCCCAAATCTAG 59.841 45.833 0.00 0.00 38.62 2.43
5744 6034 1.154205 CCGACGCCATTCTGGATGTC 61.154 60.000 0.00 3.51 40.96 3.06
5876 6166 3.749665 TTTGTGGCCATCTTTTCCTTG 57.250 42.857 9.72 0.00 0.00 3.61
5885 6177 4.630111 TCAAACTGAAATTTGTGGCCATC 58.370 39.130 9.72 0.66 39.97 3.51
5911 6203 7.954248 CAGTAAGATCTCAAGTTGTCAAAATCG 59.046 37.037 2.11 0.00 0.00 3.34
6110 6415 6.942576 AGCTAAACTTGTACATGTTCCAGATT 59.057 34.615 22.94 11.81 0.00 2.40
6136 6442 4.857037 GGCCTTAAAATGCAAGTTCTTACG 59.143 41.667 0.00 0.00 0.00 3.18
6266 6589 7.388776 TGAACATATAGCTGATGATAAACCTGC 59.611 37.037 15.27 0.00 0.00 4.85
6267 6590 8.837788 TGAACATATAGCTGATGATAAACCTG 57.162 34.615 15.27 0.00 0.00 4.00
6355 6689 3.898010 GCATCATGCGCAACATCG 58.102 55.556 17.11 3.18 36.64 3.84
6909 9487 4.399303 CAGGTAATCTAAGGCCAAGGTTTG 59.601 45.833 5.01 0.00 0.00 2.93
6910 9488 4.291249 TCAGGTAATCTAAGGCCAAGGTTT 59.709 41.667 5.01 2.81 0.00 3.27
7048 9628 6.052360 TCTGTGGTTTTAAAATTTTCAGGGC 58.948 36.000 6.72 0.00 0.00 5.19
7117 9719 2.615447 CAGGCGCATAGATTCACACATT 59.385 45.455 10.83 0.00 0.00 2.71
7118 9720 2.216046 CAGGCGCATAGATTCACACAT 58.784 47.619 10.83 0.00 0.00 3.21
7119 9721 1.655484 CAGGCGCATAGATTCACACA 58.345 50.000 10.83 0.00 0.00 3.72
7120 9722 0.305922 GCAGGCGCATAGATTCACAC 59.694 55.000 10.83 0.00 38.36 3.82
7122 9724 0.533755 AGGCAGGCGCATAGATTCAC 60.534 55.000 10.83 0.00 41.24 3.18
7202 9811 0.966875 GCAATGACAGGATGGTGGCA 60.967 55.000 0.00 0.00 43.62 4.92
7295 9909 9.017509 AGAAACAGAATGAATTGATGTGTGTAT 57.982 29.630 0.00 0.00 39.69 2.29
7320 9934 4.950050 AGTTTCAGACCTACAAGACACAG 58.050 43.478 0.00 0.00 0.00 3.66
7514 10135 2.372264 AGTGATTTATGGGCAGCACTG 58.628 47.619 0.00 0.00 35.49 3.66
7515 10136 2.814805 AGTGATTTATGGGCAGCACT 57.185 45.000 0.00 0.00 0.00 4.40
7516 10137 2.880890 CCTAGTGATTTATGGGCAGCAC 59.119 50.000 0.00 0.00 0.00 4.40
7517 10138 2.509548 ACCTAGTGATTTATGGGCAGCA 59.490 45.455 0.00 0.00 0.00 4.41
7519 10140 4.156455 ACACCTAGTGATTTATGGGCAG 57.844 45.455 0.96 0.00 36.96 4.85
7520 10141 6.158005 AGCACACCTAGTGATTTATGGGCA 62.158 45.833 0.96 0.00 46.49 5.36
7521 10142 3.685550 AGCACACCTAGTGATTTATGGGC 60.686 47.826 0.96 0.00 46.49 5.36
7522 10143 4.156455 AGCACACCTAGTGATTTATGGG 57.844 45.455 0.96 0.00 46.49 4.00
7524 10145 9.363763 CAGATATAGCACACCTAGTGATTTATG 57.636 37.037 0.96 0.00 46.49 1.90
7525 10146 8.037758 GCAGATATAGCACACCTAGTGATTTAT 58.962 37.037 0.96 0.00 46.49 1.40
7526 10147 7.015195 TGCAGATATAGCACACCTAGTGATTTA 59.985 37.037 0.96 0.00 46.49 1.40
7527 10148 6.183361 TGCAGATATAGCACACCTAGTGATTT 60.183 38.462 0.96 0.00 46.49 2.17
7528 10149 5.305386 TGCAGATATAGCACACCTAGTGATT 59.695 40.000 0.96 0.00 46.49 2.57
7532 10153 3.006323 GCTGCAGATATAGCACACCTAGT 59.994 47.826 20.43 0.00 37.02 2.57
7533 10154 3.257873 AGCTGCAGATATAGCACACCTAG 59.742 47.826 20.43 0.00 37.02 3.02
7534 10155 3.006217 CAGCTGCAGATATAGCACACCTA 59.994 47.826 20.43 0.00 37.02 3.08
7535 10156 2.045524 AGCTGCAGATATAGCACACCT 58.954 47.619 20.43 0.00 37.02 4.00
7536 10157 2.141517 CAGCTGCAGATATAGCACACC 58.858 52.381 20.43 0.00 37.02 4.16
7537 10158 1.530293 GCAGCTGCAGATATAGCACAC 59.470 52.381 33.36 0.00 41.59 3.82
7538 10159 1.541889 GGCAGCTGCAGATATAGCACA 60.542 52.381 37.63 0.00 44.36 4.57
7539 10160 1.155042 GGCAGCTGCAGATATAGCAC 58.845 55.000 37.63 14.35 44.36 4.40
7540 10161 0.035881 GGGCAGCTGCAGATATAGCA 59.964 55.000 37.63 2.70 44.36 3.49
7541 10162 0.035881 TGGGCAGCTGCAGATATAGC 59.964 55.000 37.63 18.74 44.36 2.97
7542 10163 2.783609 ATGGGCAGCTGCAGATATAG 57.216 50.000 37.63 0.00 44.36 1.31
7543 10164 2.372837 TGAATGGGCAGCTGCAGATATA 59.627 45.455 37.63 18.01 44.36 0.86
7544 10165 1.144298 TGAATGGGCAGCTGCAGATAT 59.856 47.619 37.63 22.40 44.36 1.63
7545 10166 0.547553 TGAATGGGCAGCTGCAGATA 59.452 50.000 37.63 21.22 44.36 1.98
7546 10167 1.035932 GTGAATGGGCAGCTGCAGAT 61.036 55.000 37.63 25.47 44.36 2.90
7547 10168 1.676635 GTGAATGGGCAGCTGCAGA 60.677 57.895 37.63 24.40 44.36 4.26
7548 10169 0.393402 TAGTGAATGGGCAGCTGCAG 60.393 55.000 37.63 10.11 44.36 4.41
7549 10170 0.393402 CTAGTGAATGGGCAGCTGCA 60.393 55.000 37.63 20.97 44.36 4.41
7550 10171 0.107508 TCTAGTGAATGGGCAGCTGC 60.108 55.000 30.88 30.88 41.14 5.25
7551 10172 2.012673 GTTCTAGTGAATGGGCAGCTG 58.987 52.381 10.11 10.11 34.40 4.24
7552 10173 1.065126 GGTTCTAGTGAATGGGCAGCT 60.065 52.381 0.00 0.00 34.40 4.24
7553 10174 1.340017 TGGTTCTAGTGAATGGGCAGC 60.340 52.381 0.00 0.00 34.40 5.25
7554 10175 2.290260 TGTGGTTCTAGTGAATGGGCAG 60.290 50.000 0.00 0.00 34.40 4.85
7555 10176 1.702401 TGTGGTTCTAGTGAATGGGCA 59.298 47.619 0.00 0.00 34.40 5.36
7556 10177 2.084546 GTGTGGTTCTAGTGAATGGGC 58.915 52.381 0.00 0.00 34.40 5.36
7557 10178 3.007940 TCTGTGTGGTTCTAGTGAATGGG 59.992 47.826 0.00 0.00 34.40 4.00
7558 10179 4.271696 TCTGTGTGGTTCTAGTGAATGG 57.728 45.455 0.00 0.00 34.40 3.16
7559 10180 5.349817 GTGATCTGTGTGGTTCTAGTGAATG 59.650 44.000 0.00 0.00 34.40 2.67
7560 10181 5.247110 AGTGATCTGTGTGGTTCTAGTGAAT 59.753 40.000 0.00 0.00 34.40 2.57
7561 10182 4.588951 AGTGATCTGTGTGGTTCTAGTGAA 59.411 41.667 0.00 0.00 0.00 3.18
7562 10183 4.152647 AGTGATCTGTGTGGTTCTAGTGA 58.847 43.478 0.00 0.00 0.00 3.41
7563 10184 4.527509 AGTGATCTGTGTGGTTCTAGTG 57.472 45.455 0.00 0.00 0.00 2.74
7564 10185 4.158764 GCTAGTGATCTGTGTGGTTCTAGT 59.841 45.833 0.00 0.00 0.00 2.57
7565 10186 4.400884 AGCTAGTGATCTGTGTGGTTCTAG 59.599 45.833 0.00 0.00 0.00 2.43
7566 10187 4.158579 CAGCTAGTGATCTGTGTGGTTCTA 59.841 45.833 0.00 0.00 0.00 2.10
7567 10188 3.056250 CAGCTAGTGATCTGTGTGGTTCT 60.056 47.826 0.00 0.00 0.00 3.01
7568 10189 3.056536 TCAGCTAGTGATCTGTGTGGTTC 60.057 47.826 0.00 0.00 0.00 3.62
7569 10190 2.899900 TCAGCTAGTGATCTGTGTGGTT 59.100 45.455 0.00 0.00 0.00 3.67
7570 10191 2.495270 CTCAGCTAGTGATCTGTGTGGT 59.505 50.000 0.00 0.00 33.51 4.16
7571 10192 2.738000 GCTCAGCTAGTGATCTGTGTGG 60.738 54.545 0.00 0.00 33.51 4.17
7572 10193 2.166050 AGCTCAGCTAGTGATCTGTGTG 59.834 50.000 0.00 0.00 36.99 3.82
7573 10194 2.166050 CAGCTCAGCTAGTGATCTGTGT 59.834 50.000 0.00 0.00 42.28 3.72
7574 10195 2.811855 CAGCTCAGCTAGTGATCTGTG 58.188 52.381 0.00 5.78 42.28 3.66
7577 10198 1.136695 GCACAGCTCAGCTAGTGATCT 59.863 52.381 24.81 0.00 38.75 2.75
7578 10199 1.569708 GCACAGCTCAGCTAGTGATC 58.430 55.000 24.81 10.54 38.75 2.92
7579 10200 3.756739 GCACAGCTCAGCTAGTGAT 57.243 52.632 24.81 0.00 38.75 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.