Multiple sequence alignment - TraesCS6B01G417900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G417900 chr6B 100.000 1369 0 0 920 2288 690431759 690433127 0.000000e+00 2529.0
1 TraesCS6B01G417900 chr6B 100.000 727 0 0 1 727 690430840 690431566 0.000000e+00 1343.0
2 TraesCS6B01G417900 chr4D 92.241 812 60 1 921 1729 102105992 102105181 0.000000e+00 1147.0
3 TraesCS6B01G417900 chr5D 92.413 804 57 2 921 1721 369344483 369345285 0.000000e+00 1144.0
4 TraesCS6B01G417900 chr6D 92.099 810 60 2 921 1727 450906877 450907685 0.000000e+00 1138.0
5 TraesCS6B01G417900 chr6D 91.907 729 54 4 1 727 450906105 450906830 0.000000e+00 1014.0
6 TraesCS6B01G417900 chr4B 92.279 803 59 1 921 1720 14028397 14027595 0.000000e+00 1136.0
7 TraesCS6B01G417900 chr4B 92.079 808 60 2 921 1725 551785635 551786441 0.000000e+00 1134.0
8 TraesCS6B01G417900 chr4B 91.708 808 63 2 921 1725 551731027 551731833 0.000000e+00 1118.0
9 TraesCS6B01G417900 chr4B 92.445 728 54 1 1 727 551784861 551785588 0.000000e+00 1038.0
10 TraesCS6B01G417900 chr4B 91.896 728 58 1 1 727 551730253 551730980 0.000000e+00 1016.0
11 TraesCS6B01G417900 chr7B 91.667 804 60 5 921 1721 150843029 150843828 0.000000e+00 1107.0
12 TraesCS6B01G417900 chr2D 91.542 804 65 1 921 1721 469181639 469182442 0.000000e+00 1105.0
13 TraesCS6B01G417900 chr2D 92.011 726 57 1 1 725 487337018 487336293 0.000000e+00 1018.0
14 TraesCS6B01G417900 chr2D 92.116 723 55 2 1 722 591014125 591014846 0.000000e+00 1018.0
15 TraesCS6B01G417900 chr7D 91.429 805 66 1 921 1722 463974908 463974104 0.000000e+00 1101.0
16 TraesCS6B01G417900 chr7D 91.747 727 58 2 1 725 533932956 533933682 0.000000e+00 1009.0
17 TraesCS6B01G417900 chr3D 92.837 726 51 1 1 725 449746780 449747505 0.000000e+00 1051.0
18 TraesCS6B01G417900 chr3D 91.507 730 58 3 1 727 593766202 593765474 0.000000e+00 1002.0
19 TraesCS6B01G417900 chr4A 92.033 728 54 2 1 727 418072827 418072103 0.000000e+00 1020.0
20 TraesCS6B01G417900 chr5A 87.421 159 20 0 1824 1982 521933685 521933843 1.400000e-42 183.0
21 TraesCS6B01G417900 chr5B 97.059 34 1 0 2255 2288 94963353 94963386 8.830000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G417900 chr6B 690430840 690433127 2287 False 1936 2529 100.000 1 2288 2 chr6B.!!$F1 2287
1 TraesCS6B01G417900 chr4D 102105181 102105992 811 True 1147 1147 92.241 921 1729 1 chr4D.!!$R1 808
2 TraesCS6B01G417900 chr5D 369344483 369345285 802 False 1144 1144 92.413 921 1721 1 chr5D.!!$F1 800
3 TraesCS6B01G417900 chr6D 450906105 450907685 1580 False 1076 1138 92.003 1 1727 2 chr6D.!!$F1 1726
4 TraesCS6B01G417900 chr4B 14027595 14028397 802 True 1136 1136 92.279 921 1720 1 chr4B.!!$R1 799
5 TraesCS6B01G417900 chr4B 551784861 551786441 1580 False 1086 1134 92.262 1 1725 2 chr4B.!!$F2 1724
6 TraesCS6B01G417900 chr4B 551730253 551731833 1580 False 1067 1118 91.802 1 1725 2 chr4B.!!$F1 1724
7 TraesCS6B01G417900 chr7B 150843029 150843828 799 False 1107 1107 91.667 921 1721 1 chr7B.!!$F1 800
8 TraesCS6B01G417900 chr2D 469181639 469182442 803 False 1105 1105 91.542 921 1721 1 chr2D.!!$F1 800
9 TraesCS6B01G417900 chr2D 487336293 487337018 725 True 1018 1018 92.011 1 725 1 chr2D.!!$R1 724
10 TraesCS6B01G417900 chr2D 591014125 591014846 721 False 1018 1018 92.116 1 722 1 chr2D.!!$F2 721
11 TraesCS6B01G417900 chr7D 463974104 463974908 804 True 1101 1101 91.429 921 1722 1 chr7D.!!$R1 801
12 TraesCS6B01G417900 chr7D 533932956 533933682 726 False 1009 1009 91.747 1 725 1 chr7D.!!$F1 724
13 TraesCS6B01G417900 chr3D 449746780 449747505 725 False 1051 1051 92.837 1 725 1 chr3D.!!$F1 724
14 TraesCS6B01G417900 chr3D 593765474 593766202 728 True 1002 1002 91.507 1 727 1 chr3D.!!$R1 726
15 TraesCS6B01G417900 chr4A 418072103 418072827 724 True 1020 1020 92.033 1 727 1 chr4A.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 303 0.247736 AGTTCGAGCACACCTCCATC 59.752 55.0 1.01 0.0 37.27 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 1874 0.026285 GTGCGGCGTACAACATCATC 59.974 55.0 23.09 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 4.672251 GCACCATTGCCATCTCCT 57.328 55.556 0.00 0.00 43.66 3.69
62 64 4.588951 CCATTGCCATCTCCTAGTACACTA 59.411 45.833 0.00 0.00 0.00 2.74
88 90 0.539986 GACGGTCATTAGGAGCCCAA 59.460 55.000 2.62 0.00 40.99 4.12
162 164 1.031571 TGATTCATGGCCCAGCGAAC 61.032 55.000 0.00 0.00 0.00 3.95
233 235 3.052082 CTTGTGCAGTGGCCCTCG 61.052 66.667 0.00 0.00 40.13 4.63
257 259 1.329906 GCACTGCATCAGATTCCTTCG 59.670 52.381 0.29 0.00 35.18 3.79
263 266 1.266175 CATCAGATTCCTTCGGCATGC 59.734 52.381 9.90 9.90 0.00 4.06
298 303 0.247736 AGTTCGAGCACACCTCCATC 59.752 55.000 1.01 0.00 37.27 3.51
438 443 2.368875 GGAGGAAGGTTGACAGTGAGAA 59.631 50.000 0.00 0.00 0.00 2.87
445 450 5.559148 AGGTTGACAGTGAGAAAAGAGAT 57.441 39.130 0.00 0.00 0.00 2.75
461 466 1.416772 GAGATGGGGTGGGTAAGTAGC 59.583 57.143 0.00 0.00 0.00 3.58
463 468 0.325860 ATGGGGTGGGTAAGTAGCGA 60.326 55.000 0.00 0.00 0.00 4.93
493 500 4.382793 GGGTGAGTAAATATAGGGGCGATC 60.383 50.000 0.00 0.00 0.00 3.69
513 520 2.306219 TCGAGAGGAGGAGAAGAGTGAA 59.694 50.000 0.00 0.00 0.00 3.18
547 554 8.612619 CCGTTTTAACTACATGCTCTTCAATAT 58.387 33.333 0.00 0.00 0.00 1.28
571 578 3.402110 CATGAACTCTGTGTTGTGCCTA 58.598 45.455 0.00 0.00 39.30 3.93
572 579 2.833794 TGAACTCTGTGTTGTGCCTAC 58.166 47.619 0.00 0.00 39.30 3.18
582 589 2.084546 GTTGTGCCTACCTCCATGAAC 58.915 52.381 0.00 0.00 0.00 3.18
594 601 3.079578 CTCCATGAACTGTGTGCAGATT 58.920 45.455 0.00 0.00 45.28 2.40
632 639 3.314331 CACAGAGGTGCTCCCGGT 61.314 66.667 0.00 0.00 38.37 5.28
673 680 1.310715 CCCCTTCATCCAATGCCCA 59.689 57.895 0.00 0.00 0.00 5.36
710 717 1.481056 CCCACCTCCAACGAAGACCT 61.481 60.000 0.00 0.00 0.00 3.85
972 979 3.498774 ACTCACTTCTGCAAGGTCATT 57.501 42.857 0.00 0.00 33.37 2.57
1092 1100 3.698250 CTGGAAGGTGACGGTGAAA 57.302 52.632 0.00 0.00 0.00 2.69
1113 1121 1.296715 GATGAACGGCAGGGTGACT 59.703 57.895 0.00 0.00 0.00 3.41
1180 1188 1.410737 CGGCTACATGGTGACGTTCG 61.411 60.000 7.21 0.00 0.00 3.95
1317 1325 5.392125 GGCACCTCCTTCCTAAGTACTATA 58.608 45.833 0.00 0.00 0.00 1.31
1326 1334 6.999272 CCTTCCTAAGTACTATAGAGTCTGCA 59.001 42.308 6.78 0.00 37.10 4.41
1327 1335 7.502895 CCTTCCTAAGTACTATAGAGTCTGCAA 59.497 40.741 6.78 0.00 37.10 4.08
1332 1340 9.891828 CTAAGTACTATAGAGTCTGCAATGAAG 57.108 37.037 6.78 0.00 37.10 3.02
1384 1392 3.895232 AGTGTGGTACTGCTTATCTGG 57.105 47.619 0.00 0.00 38.49 3.86
1442 1450 3.055602 TCTGCTCTGCTTATGATGTGTGT 60.056 43.478 0.00 0.00 0.00 3.72
1491 1499 1.774856 ACCTCACCAACTAGCCAAAGT 59.225 47.619 0.00 0.00 0.00 2.66
1583 1594 4.389374 CAAATACCAGACAGTGTGGTTCT 58.611 43.478 26.55 12.48 46.73 3.01
1619 1631 0.321830 GGGCATGCAAGCAACCAAAT 60.322 50.000 21.36 0.00 35.83 2.32
1670 1682 7.539712 GCATTTGCATAGTCAGACTAAGTTA 57.460 36.000 14.46 1.73 41.59 2.24
1676 1688 8.349568 TGCATAGTCAGACTAAGTTAAGAAGA 57.650 34.615 14.46 0.00 33.89 2.87
1677 1689 8.462811 TGCATAGTCAGACTAAGTTAAGAAGAG 58.537 37.037 14.46 0.00 33.89 2.85
1704 1716 4.567159 GCAATGCAACTACTGTAGACTACC 59.433 45.833 21.01 5.56 0.00 3.18
1709 1721 4.413087 CAACTACTGTAGACTACCGCAAG 58.587 47.826 21.01 7.58 0.00 4.01
1710 1722 3.683802 ACTACTGTAGACTACCGCAAGT 58.316 45.455 21.01 8.95 0.00 3.16
1716 1728 5.047519 ACTGTAGACTACCGCAAGTAAACAT 60.048 40.000 10.14 0.00 0.00 2.71
1729 1741 2.147958 GTAAACATGCCCGAAGTGTGA 58.852 47.619 0.00 0.00 0.00 3.58
1730 1742 0.951558 AAACATGCCCGAAGTGTGAC 59.048 50.000 0.00 0.00 0.00 3.67
1731 1743 0.179032 AACATGCCCGAAGTGTGACA 60.179 50.000 0.00 0.00 0.00 3.58
1732 1744 0.036732 ACATGCCCGAAGTGTGACAT 59.963 50.000 0.00 0.00 0.00 3.06
1733 1745 1.277842 ACATGCCCGAAGTGTGACATA 59.722 47.619 0.00 0.00 0.00 2.29
1734 1746 1.665679 CATGCCCGAAGTGTGACATAC 59.334 52.381 0.00 0.00 0.00 2.39
1735 1747 0.973632 TGCCCGAAGTGTGACATACT 59.026 50.000 0.00 0.00 0.00 2.12
1736 1748 1.337728 TGCCCGAAGTGTGACATACTG 60.338 52.381 5.53 0.00 0.00 2.74
1737 1749 1.337823 GCCCGAAGTGTGACATACTGT 60.338 52.381 5.53 0.00 0.00 3.55
1738 1750 2.870435 GCCCGAAGTGTGACATACTGTT 60.870 50.000 5.53 0.00 0.00 3.16
1739 1751 2.736721 CCCGAAGTGTGACATACTGTTG 59.263 50.000 5.53 0.00 0.00 3.33
1740 1752 3.554129 CCCGAAGTGTGACATACTGTTGA 60.554 47.826 5.53 0.00 0.00 3.18
1741 1753 4.055360 CCGAAGTGTGACATACTGTTGAA 58.945 43.478 5.53 0.00 0.00 2.69
1742 1754 4.084537 CCGAAGTGTGACATACTGTTGAAC 60.085 45.833 5.53 0.00 0.00 3.18
1743 1755 4.084537 CGAAGTGTGACATACTGTTGAACC 60.085 45.833 5.53 0.00 0.00 3.62
1744 1756 4.689612 AGTGTGACATACTGTTGAACCT 57.310 40.909 3.78 0.00 0.00 3.50
1745 1757 4.632153 AGTGTGACATACTGTTGAACCTC 58.368 43.478 3.78 0.00 0.00 3.85
1746 1758 4.100963 AGTGTGACATACTGTTGAACCTCA 59.899 41.667 3.78 0.00 0.00 3.86
1747 1759 4.814234 GTGTGACATACTGTTGAACCTCAA 59.186 41.667 0.00 0.00 33.32 3.02
1755 1767 1.658994 GTTGAACCTCAACGACACCA 58.341 50.000 3.92 0.00 45.88 4.17
1756 1768 2.011222 GTTGAACCTCAACGACACCAA 58.989 47.619 3.92 0.00 45.88 3.67
1757 1769 1.658994 TGAACCTCAACGACACCAAC 58.341 50.000 0.00 0.00 0.00 3.77
1758 1770 0.580104 GAACCTCAACGACACCAACG 59.420 55.000 0.00 0.00 0.00 4.10
1759 1771 0.176219 AACCTCAACGACACCAACGA 59.824 50.000 0.00 0.00 34.70 3.85
1760 1772 0.529119 ACCTCAACGACACCAACGAC 60.529 55.000 0.00 0.00 34.70 4.34
1761 1773 0.528901 CCTCAACGACACCAACGACA 60.529 55.000 0.00 0.00 34.70 4.35
1762 1774 1.282817 CTCAACGACACCAACGACAA 58.717 50.000 0.00 0.00 34.70 3.18
1763 1775 1.000884 TCAACGACACCAACGACAAC 58.999 50.000 0.00 0.00 34.70 3.32
1764 1776 0.314738 CAACGACACCAACGACAACG 60.315 55.000 0.00 0.00 45.75 4.10
1765 1777 0.458197 AACGACACCAACGACAACGA 60.458 50.000 0.00 0.00 42.66 3.85
1766 1778 0.249155 ACGACACCAACGACAACGAT 60.249 50.000 0.00 0.00 42.66 3.73
1767 1779 0.433492 CGACACCAACGACAACGATC 59.567 55.000 0.00 0.00 42.66 3.69
1768 1780 1.493772 GACACCAACGACAACGATCA 58.506 50.000 0.00 0.00 42.66 2.92
1769 1781 2.066262 GACACCAACGACAACGATCAT 58.934 47.619 0.00 0.00 42.66 2.45
1770 1782 2.066262 ACACCAACGACAACGATCATC 58.934 47.619 0.00 0.00 42.66 2.92
1771 1783 1.059122 CACCAACGACAACGATCATCG 59.941 52.381 5.22 5.22 46.93 3.84
1782 1794 2.174060 CGATCATCGTCTTGTCGTCA 57.826 50.000 0.00 0.00 34.72 4.35
1783 1795 2.720933 CGATCATCGTCTTGTCGTCAT 58.279 47.619 0.00 0.00 34.72 3.06
1784 1796 2.465474 CGATCATCGTCTTGTCGTCATG 59.535 50.000 0.00 0.00 34.72 3.07
1785 1797 2.278026 TCATCGTCTTGTCGTCATGG 57.722 50.000 0.00 0.00 0.00 3.66
1786 1798 1.135112 TCATCGTCTTGTCGTCATGGG 60.135 52.381 0.00 0.00 0.00 4.00
1787 1799 1.135112 CATCGTCTTGTCGTCATGGGA 60.135 52.381 0.00 0.00 0.00 4.37
1788 1800 0.526211 TCGTCTTGTCGTCATGGGAG 59.474 55.000 0.00 0.00 0.00 4.30
1789 1801 1.078759 CGTCTTGTCGTCATGGGAGC 61.079 60.000 0.00 0.00 0.00 4.70
1790 1802 0.247736 GTCTTGTCGTCATGGGAGCT 59.752 55.000 0.00 0.00 0.00 4.09
1791 1803 0.532573 TCTTGTCGTCATGGGAGCTC 59.467 55.000 4.71 4.71 0.00 4.09
1792 1804 0.803768 CTTGTCGTCATGGGAGCTCG 60.804 60.000 7.83 0.00 0.00 5.03
1793 1805 2.105128 GTCGTCATGGGAGCTCGG 59.895 66.667 7.83 0.00 0.00 4.63
1794 1806 3.838271 TCGTCATGGGAGCTCGGC 61.838 66.667 7.83 0.00 0.00 5.54
1795 1807 3.842923 CGTCATGGGAGCTCGGCT 61.843 66.667 7.83 0.00 43.88 5.52
1796 1808 2.586792 GTCATGGGAGCTCGGCTT 59.413 61.111 7.83 0.00 39.88 4.35
1797 1809 1.817099 GTCATGGGAGCTCGGCTTG 60.817 63.158 7.83 3.06 39.88 4.01
1798 1810 3.207669 CATGGGAGCTCGGCTTGC 61.208 66.667 7.83 0.00 39.88 4.01
1799 1811 3.720601 ATGGGAGCTCGGCTTGCA 61.721 61.111 7.83 0.00 39.88 4.08
1800 1812 3.272364 ATGGGAGCTCGGCTTGCAA 62.272 57.895 7.83 0.00 39.88 4.08
1801 1813 3.130160 GGGAGCTCGGCTTGCAAG 61.130 66.667 22.44 22.44 39.88 4.01
1802 1814 3.130160 GGAGCTCGGCTTGCAAGG 61.130 66.667 27.10 12.18 39.88 3.61
1810 1822 2.257676 GCTTGCAAGGCAGCTGAC 59.742 61.111 27.10 17.00 40.61 3.51
1811 1823 2.558286 GCTTGCAAGGCAGCTGACA 61.558 57.895 27.10 6.02 40.61 3.58
1812 1824 2.035421 CTTGCAAGGCAGCTGACAA 58.965 52.632 24.55 13.35 40.61 3.18
1813 1825 0.386476 CTTGCAAGGCAGCTGACAAA 59.614 50.000 24.55 9.51 40.61 2.83
1814 1826 0.102844 TTGCAAGGCAGCTGACAAAC 59.897 50.000 24.55 10.72 40.61 2.93
1815 1827 1.036481 TGCAAGGCAGCTGACAAACA 61.036 50.000 24.55 13.52 33.32 2.83
1816 1828 0.316204 GCAAGGCAGCTGACAAACAT 59.684 50.000 24.55 0.00 0.00 2.71
1817 1829 1.668047 GCAAGGCAGCTGACAAACATC 60.668 52.381 24.55 0.09 0.00 3.06
1818 1830 0.877071 AAGGCAGCTGACAAACATCG 59.123 50.000 24.55 0.00 0.00 3.84
1819 1831 0.035317 AGGCAGCTGACAAACATCGA 59.965 50.000 24.55 0.00 0.00 3.59
1820 1832 0.166814 GGCAGCTGACAAACATCGAC 59.833 55.000 20.43 0.00 0.00 4.20
1821 1833 0.867746 GCAGCTGACAAACATCGACA 59.132 50.000 20.43 0.00 0.00 4.35
1822 1834 1.136141 GCAGCTGACAAACATCGACAG 60.136 52.381 20.43 0.00 0.00 3.51
1823 1835 1.462283 CAGCTGACAAACATCGACAGG 59.538 52.381 8.42 0.00 0.00 4.00
1824 1836 0.798776 GCTGACAAACATCGACAGGG 59.201 55.000 0.00 0.00 0.00 4.45
1825 1837 0.798776 CTGACAAACATCGACAGGGC 59.201 55.000 0.00 0.00 0.00 5.19
1826 1838 0.948623 TGACAAACATCGACAGGGCG 60.949 55.000 0.00 0.00 0.00 6.13
1827 1839 2.240612 GACAAACATCGACAGGGCGC 62.241 60.000 0.00 0.00 0.00 6.53
1828 1840 2.034879 CAAACATCGACAGGGCGCT 61.035 57.895 7.64 0.00 0.00 5.92
1829 1841 2.034879 AAACATCGACAGGGCGCTG 61.035 57.895 27.57 27.57 33.98 5.18
1830 1842 2.449031 AAACATCGACAGGGCGCTGA 62.449 55.000 34.63 15.09 32.33 4.26
1831 1843 2.584418 CATCGACAGGGCGCTGAG 60.584 66.667 34.63 25.83 29.63 3.35
1832 1844 3.842923 ATCGACAGGGCGCTGAGG 61.843 66.667 34.63 24.13 0.00 3.86
1835 1847 4.767255 GACAGGGCGCTGAGGTGG 62.767 72.222 34.63 9.83 0.00 4.61
1837 1849 4.020617 CAGGGCGCTGAGGTGGAA 62.021 66.667 25.55 0.00 0.00 3.53
1838 1850 3.249189 AGGGCGCTGAGGTGGAAA 61.249 61.111 7.64 0.00 0.00 3.13
1839 1851 2.747855 GGGCGCTGAGGTGGAAAG 60.748 66.667 7.64 0.00 0.00 2.62
1840 1852 2.032681 GGCGCTGAGGTGGAAAGT 59.967 61.111 7.64 0.00 0.00 2.66
1841 1853 2.328099 GGCGCTGAGGTGGAAAGTG 61.328 63.158 7.64 0.00 0.00 3.16
1842 1854 2.970974 GCGCTGAGGTGGAAAGTGC 61.971 63.158 0.00 0.00 39.93 4.40
1843 1855 1.302033 CGCTGAGGTGGAAAGTGCT 60.302 57.895 0.00 0.00 0.00 4.40
1844 1856 1.294659 CGCTGAGGTGGAAAGTGCTC 61.295 60.000 0.00 0.00 0.00 4.26
1845 1857 0.036022 GCTGAGGTGGAAAGTGCTCT 59.964 55.000 0.00 0.00 0.00 4.09
1846 1858 1.943507 GCTGAGGTGGAAAGTGCTCTC 60.944 57.143 0.00 0.00 0.00 3.20
1847 1859 1.622811 CTGAGGTGGAAAGTGCTCTCT 59.377 52.381 0.00 0.00 0.00 3.10
1848 1860 1.345741 TGAGGTGGAAAGTGCTCTCTG 59.654 52.381 0.00 0.00 0.00 3.35
1849 1861 1.620819 GAGGTGGAAAGTGCTCTCTGA 59.379 52.381 0.00 0.00 0.00 3.27
1850 1862 2.235898 GAGGTGGAAAGTGCTCTCTGAT 59.764 50.000 0.00 0.00 0.00 2.90
1851 1863 2.641815 AGGTGGAAAGTGCTCTCTGATT 59.358 45.455 0.00 0.00 0.00 2.57
1852 1864 3.073650 AGGTGGAAAGTGCTCTCTGATTT 59.926 43.478 0.00 0.00 0.00 2.17
1853 1865 3.438434 GGTGGAAAGTGCTCTCTGATTTC 59.562 47.826 0.00 0.00 0.00 2.17
1854 1866 4.322567 GTGGAAAGTGCTCTCTGATTTCT 58.677 43.478 0.00 0.00 31.96 2.52
1855 1867 5.482908 GTGGAAAGTGCTCTCTGATTTCTA 58.517 41.667 0.00 0.00 31.96 2.10
1856 1868 5.580297 GTGGAAAGTGCTCTCTGATTTCTAG 59.420 44.000 0.00 0.00 31.96 2.43
1857 1869 5.115480 GGAAAGTGCTCTCTGATTTCTAGG 58.885 45.833 0.00 0.00 31.96 3.02
1858 1870 3.817709 AGTGCTCTCTGATTTCTAGGC 57.182 47.619 0.00 0.00 0.00 3.93
1859 1871 2.100584 AGTGCTCTCTGATTTCTAGGCG 59.899 50.000 0.00 0.00 0.00 5.52
1860 1872 1.410517 TGCTCTCTGATTTCTAGGCGG 59.589 52.381 0.00 0.00 0.00 6.13
1861 1873 1.683917 GCTCTCTGATTTCTAGGCGGA 59.316 52.381 0.00 0.00 0.00 5.54
1862 1874 2.288152 GCTCTCTGATTTCTAGGCGGAG 60.288 54.545 0.00 0.00 36.58 4.63
1863 1875 3.218453 CTCTCTGATTTCTAGGCGGAGA 58.782 50.000 0.00 0.00 40.66 3.71
1864 1876 3.826157 CTCTCTGATTTCTAGGCGGAGAT 59.174 47.826 0.00 0.00 41.67 2.75
1865 1877 3.571828 TCTCTGATTTCTAGGCGGAGATG 59.428 47.826 0.00 0.00 38.70 2.90
1866 1878 3.566351 TCTGATTTCTAGGCGGAGATGA 58.434 45.455 0.00 0.00 0.00 2.92
1867 1879 4.155709 TCTGATTTCTAGGCGGAGATGAT 58.844 43.478 0.00 0.00 0.00 2.45
1868 1880 4.021632 TCTGATTTCTAGGCGGAGATGATG 60.022 45.833 0.00 0.00 0.00 3.07
1869 1881 3.643320 TGATTTCTAGGCGGAGATGATGT 59.357 43.478 0.00 0.00 0.00 3.06
1870 1882 4.101585 TGATTTCTAGGCGGAGATGATGTT 59.898 41.667 0.00 0.00 0.00 2.71
1871 1883 3.459232 TTCTAGGCGGAGATGATGTTG 57.541 47.619 0.00 0.00 0.00 3.33
1872 1884 2.388735 TCTAGGCGGAGATGATGTTGT 58.611 47.619 0.00 0.00 0.00 3.32
1873 1885 3.562182 TCTAGGCGGAGATGATGTTGTA 58.438 45.455 0.00 0.00 0.00 2.41
1874 1886 2.604046 AGGCGGAGATGATGTTGTAC 57.396 50.000 0.00 0.00 0.00 2.90
1875 1887 1.202417 AGGCGGAGATGATGTTGTACG 60.202 52.381 0.00 0.00 0.00 3.67
1876 1888 0.577269 GCGGAGATGATGTTGTACGC 59.423 55.000 0.00 0.00 38.94 4.42
1877 1889 1.209128 CGGAGATGATGTTGTACGCC 58.791 55.000 0.00 0.00 0.00 5.68
1878 1890 1.209128 GGAGATGATGTTGTACGCCG 58.791 55.000 0.00 0.00 0.00 6.46
1879 1891 0.577269 GAGATGATGTTGTACGCCGC 59.423 55.000 0.00 0.00 0.00 6.53
1880 1892 0.108377 AGATGATGTTGTACGCCGCA 60.108 50.000 0.00 0.00 0.00 5.69
1881 1893 0.026285 GATGATGTTGTACGCCGCAC 59.974 55.000 0.00 0.00 0.00 5.34
1882 1894 1.366111 ATGATGTTGTACGCCGCACC 61.366 55.000 0.00 0.00 0.00 5.01
1883 1895 3.078725 GATGTTGTACGCCGCACCG 62.079 63.158 0.00 0.00 0.00 4.94
1884 1896 3.869473 ATGTTGTACGCCGCACCGT 62.869 57.895 4.05 4.05 44.62 4.83
1885 1897 4.067016 GTTGTACGCCGCACCGTG 62.067 66.667 8.69 0.00 42.15 4.94
1886 1898 4.588854 TTGTACGCCGCACCGTGT 62.589 61.111 8.69 0.00 42.15 4.49
1893 1905 3.403057 CCGCACCGTGTGACGAAG 61.403 66.667 13.77 0.00 46.05 3.79
1894 1906 4.059459 CGCACCGTGTGACGAAGC 62.059 66.667 6.18 0.65 46.05 3.86
1895 1907 3.712881 GCACCGTGTGACGAAGCC 61.713 66.667 8.04 0.00 46.05 4.35
1896 1908 2.279851 CACCGTGTGACGAAGCCA 60.280 61.111 0.00 0.00 46.05 4.75
1897 1909 1.885388 CACCGTGTGACGAAGCCAA 60.885 57.895 0.00 0.00 46.05 4.52
1898 1910 1.594293 ACCGTGTGACGAAGCCAAG 60.594 57.895 0.00 0.00 46.05 3.61
1899 1911 2.317609 CCGTGTGACGAAGCCAAGG 61.318 63.158 0.00 0.00 46.05 3.61
1900 1912 2.946762 GTGTGACGAAGCCAAGGC 59.053 61.111 2.02 2.02 42.33 4.35
1901 1913 2.281484 TGTGACGAAGCCAAGGCC 60.281 61.111 7.62 0.00 43.17 5.19
1902 1914 3.056328 GTGACGAAGCCAAGGCCC 61.056 66.667 7.62 0.00 43.17 5.80
1903 1915 4.697756 TGACGAAGCCAAGGCCCG 62.698 66.667 17.91 17.91 43.17 6.13
1927 1939 4.479993 CCTGAAGGCCCTGGCGAG 62.480 72.222 0.00 0.00 43.06 5.03
1928 1940 3.393970 CTGAAGGCCCTGGCGAGA 61.394 66.667 0.00 0.00 43.06 4.04
1929 1941 3.382803 CTGAAGGCCCTGGCGAGAG 62.383 68.421 0.00 0.00 43.06 3.20
1930 1942 4.168291 GAAGGCCCTGGCGAGAGG 62.168 72.222 0.00 0.00 43.06 3.69
1931 1943 4.722535 AAGGCCCTGGCGAGAGGA 62.723 66.667 0.00 0.00 43.06 3.71
1936 1948 4.465446 CCTGGCGAGAGGAGGGGA 62.465 72.222 0.00 0.00 34.69 4.81
1937 1949 2.837291 CTGGCGAGAGGAGGGGAG 60.837 72.222 0.00 0.00 0.00 4.30
1938 1950 3.670629 CTGGCGAGAGGAGGGGAGT 62.671 68.421 0.00 0.00 0.00 3.85
1939 1951 2.364448 GGCGAGAGGAGGGGAGTT 60.364 66.667 0.00 0.00 0.00 3.01
1940 1952 2.428085 GGCGAGAGGAGGGGAGTTC 61.428 68.421 0.00 0.00 0.00 3.01
1941 1953 1.682684 GCGAGAGGAGGGGAGTTCA 60.683 63.158 0.00 0.00 0.00 3.18
1942 1954 1.045911 GCGAGAGGAGGGGAGTTCAT 61.046 60.000 0.00 0.00 0.00 2.57
1943 1955 1.036707 CGAGAGGAGGGGAGTTCATC 58.963 60.000 0.00 0.00 0.00 2.92
1944 1956 1.686428 CGAGAGGAGGGGAGTTCATCA 60.686 57.143 0.00 0.00 0.00 3.07
1945 1957 1.760029 GAGAGGAGGGGAGTTCATCAC 59.240 57.143 0.00 0.00 0.00 3.06
1946 1958 0.461961 GAGGAGGGGAGTTCATCACG 59.538 60.000 0.00 0.00 28.88 4.35
1947 1959 1.153349 GGAGGGGAGTTCATCACGC 60.153 63.158 0.00 0.00 28.88 5.34
1948 1960 1.596934 GAGGGGAGTTCATCACGCA 59.403 57.895 0.00 0.00 28.88 5.24
1949 1961 0.741221 GAGGGGAGTTCATCACGCAC 60.741 60.000 0.00 0.00 28.88 5.34
1950 1962 1.745489 GGGGAGTTCATCACGCACC 60.745 63.158 0.00 0.00 42.24 5.01
1951 1963 1.296715 GGGAGTTCATCACGCACCT 59.703 57.895 0.00 0.00 0.00 4.00
1952 1964 1.021390 GGGAGTTCATCACGCACCTG 61.021 60.000 0.00 0.00 0.00 4.00
1953 1965 0.320771 GGAGTTCATCACGCACCTGT 60.321 55.000 0.00 0.00 0.00 4.00
1954 1966 0.792640 GAGTTCATCACGCACCTGTG 59.207 55.000 0.00 0.00 41.28 3.66
1955 1967 0.603707 AGTTCATCACGCACCTGTGG 60.604 55.000 0.00 0.00 40.31 4.17
1957 1969 3.434319 CATCACGCACCTGTGGGC 61.434 66.667 13.53 0.00 46.01 5.36
1995 2007 4.383861 TGCTGGAGCGAGGCACTG 62.384 66.667 0.00 0.00 45.83 3.66
1996 2008 4.385405 GCTGGAGCGAGGCACTGT 62.385 66.667 0.00 0.00 41.55 3.55
1997 2009 2.125753 CTGGAGCGAGGCACTGTC 60.126 66.667 0.00 0.00 41.55 3.51
1998 2010 3.978723 CTGGAGCGAGGCACTGTCG 62.979 68.421 0.00 0.00 41.55 4.35
1999 2011 4.803426 GGAGCGAGGCACTGTCGG 62.803 72.222 0.00 0.00 41.55 4.79
2000 2012 3.749064 GAGCGAGGCACTGTCGGA 61.749 66.667 0.00 0.00 41.55 4.55
2001 2013 3.973267 GAGCGAGGCACTGTCGGAC 62.973 68.421 0.00 0.00 41.55 4.79
2003 2015 3.680786 CGAGGCACTGTCGGACCA 61.681 66.667 5.55 0.00 41.55 4.02
2004 2016 2.048127 GAGGCACTGTCGGACCAC 60.048 66.667 5.55 0.00 41.55 4.16
2005 2017 2.524394 AGGCACTGTCGGACCACT 60.524 61.111 5.55 0.00 37.18 4.00
2006 2018 2.357517 GGCACTGTCGGACCACTG 60.358 66.667 5.55 0.00 0.00 3.66
2007 2019 2.357517 GCACTGTCGGACCACTGG 60.358 66.667 5.55 0.00 0.00 4.00
2008 2020 2.867855 GCACTGTCGGACCACTGGA 61.868 63.158 5.55 0.00 0.00 3.86
2009 2021 1.975327 CACTGTCGGACCACTGGAT 59.025 57.895 5.55 0.00 0.00 3.41
2010 2022 0.390340 CACTGTCGGACCACTGGATG 60.390 60.000 5.55 0.00 0.00 3.51
2011 2023 1.448540 CTGTCGGACCACTGGATGC 60.449 63.158 5.55 0.00 0.00 3.91
2012 2024 2.125106 GTCGGACCACTGGATGCC 60.125 66.667 0.71 0.00 0.00 4.40
2013 2025 3.770040 TCGGACCACTGGATGCCG 61.770 66.667 17.19 17.19 43.11 5.69
2014 2026 4.082523 CGGACCACTGGATGCCGT 62.083 66.667 15.85 0.00 37.35 5.68
2015 2027 2.436646 GGACCACTGGATGCCGTG 60.437 66.667 0.71 1.66 0.00 4.94
2016 2028 2.347490 GACCACTGGATGCCGTGT 59.653 61.111 0.71 0.00 0.00 4.49
2017 2029 2.032528 ACCACTGGATGCCGTGTG 59.967 61.111 0.71 2.21 32.97 3.82
2018 2030 2.347114 CCACTGGATGCCGTGTGA 59.653 61.111 7.92 0.00 34.30 3.58
2019 2031 2.034879 CCACTGGATGCCGTGTGAC 61.035 63.158 7.92 0.00 34.30 3.67
2020 2032 2.034879 CACTGGATGCCGTGTGACC 61.035 63.158 0.46 0.00 34.30 4.02
2021 2033 2.815211 CTGGATGCCGTGTGACCG 60.815 66.667 0.00 0.00 0.00 4.79
2022 2034 3.295304 CTGGATGCCGTGTGACCGA 62.295 63.158 0.00 0.00 0.00 4.69
2023 2035 2.186903 GGATGCCGTGTGACCGAT 59.813 61.111 0.00 0.00 0.00 4.18
2024 2036 1.449601 GGATGCCGTGTGACCGATT 60.450 57.895 0.00 0.00 0.00 3.34
2025 2037 1.429148 GGATGCCGTGTGACCGATTC 61.429 60.000 0.00 0.00 0.00 2.52
2026 2038 1.429148 GATGCCGTGTGACCGATTCC 61.429 60.000 0.00 0.00 0.00 3.01
2027 2039 2.047655 GCCGTGTGACCGATTCCA 60.048 61.111 0.00 0.00 0.00 3.53
2028 2040 1.449601 GCCGTGTGACCGATTCCAT 60.450 57.895 0.00 0.00 0.00 3.41
2029 2041 1.024579 GCCGTGTGACCGATTCCATT 61.025 55.000 0.00 0.00 0.00 3.16
2030 2042 1.006832 CCGTGTGACCGATTCCATTC 58.993 55.000 0.00 0.00 0.00 2.67
2031 2043 1.674519 CCGTGTGACCGATTCCATTCA 60.675 52.381 0.00 0.00 0.00 2.57
2032 2044 2.073056 CGTGTGACCGATTCCATTCAA 58.927 47.619 0.00 0.00 0.00 2.69
2033 2045 2.094258 CGTGTGACCGATTCCATTCAAG 59.906 50.000 0.00 0.00 0.00 3.02
2034 2046 2.083774 TGTGACCGATTCCATTCAAGC 58.916 47.619 0.00 0.00 0.00 4.01
2035 2047 1.401905 GTGACCGATTCCATTCAAGCC 59.598 52.381 0.00 0.00 0.00 4.35
2036 2048 1.281867 TGACCGATTCCATTCAAGCCT 59.718 47.619 0.00 0.00 0.00 4.58
2037 2049 1.943340 GACCGATTCCATTCAAGCCTC 59.057 52.381 0.00 0.00 0.00 4.70
2038 2050 1.312815 CCGATTCCATTCAAGCCTCC 58.687 55.000 0.00 0.00 0.00 4.30
2039 2051 1.408683 CCGATTCCATTCAAGCCTCCA 60.409 52.381 0.00 0.00 0.00 3.86
2040 2052 2.368439 CGATTCCATTCAAGCCTCCAA 58.632 47.619 0.00 0.00 0.00 3.53
2041 2053 2.098117 CGATTCCATTCAAGCCTCCAAC 59.902 50.000 0.00 0.00 0.00 3.77
2042 2054 1.923356 TTCCATTCAAGCCTCCAACC 58.077 50.000 0.00 0.00 0.00 3.77
2043 2055 0.322456 TCCATTCAAGCCTCCAACCG 60.322 55.000 0.00 0.00 0.00 4.44
2044 2056 1.508088 CATTCAAGCCTCCAACCGC 59.492 57.895 0.00 0.00 0.00 5.68
2045 2057 1.074775 ATTCAAGCCTCCAACCGCA 59.925 52.632 0.00 0.00 0.00 5.69
2046 2058 0.962356 ATTCAAGCCTCCAACCGCAG 60.962 55.000 0.00 0.00 0.00 5.18
2047 2059 2.281761 CAAGCCTCCAACCGCAGT 60.282 61.111 0.00 0.00 0.00 4.40
2048 2060 2.281761 AAGCCTCCAACCGCAGTG 60.282 61.111 0.00 0.00 0.00 3.66
2051 2063 2.360350 CCTCCAACCGCAGTGCAT 60.360 61.111 16.83 0.00 0.00 3.96
2052 2064 1.078497 CCTCCAACCGCAGTGCATA 60.078 57.895 16.83 0.00 0.00 3.14
2053 2065 0.464373 CCTCCAACCGCAGTGCATAT 60.464 55.000 16.83 0.00 0.00 1.78
2054 2066 1.202639 CCTCCAACCGCAGTGCATATA 60.203 52.381 16.83 0.00 0.00 0.86
2055 2067 2.550855 CCTCCAACCGCAGTGCATATAT 60.551 50.000 16.83 0.00 0.00 0.86
2056 2068 3.306710 CCTCCAACCGCAGTGCATATATA 60.307 47.826 16.83 0.00 0.00 0.86
2057 2069 4.507710 CTCCAACCGCAGTGCATATATAT 58.492 43.478 16.83 0.00 0.00 0.86
2058 2070 5.395214 CCTCCAACCGCAGTGCATATATATA 60.395 44.000 16.83 0.00 0.00 0.86
2059 2071 5.416083 TCCAACCGCAGTGCATATATATAC 58.584 41.667 16.83 0.00 0.00 1.47
2060 2072 5.186992 TCCAACCGCAGTGCATATATATACT 59.813 40.000 16.83 0.00 0.00 2.12
2061 2073 5.874810 CCAACCGCAGTGCATATATATACTT 59.125 40.000 16.83 0.00 0.00 2.24
2062 2074 6.036083 CCAACCGCAGTGCATATATATACTTC 59.964 42.308 16.83 0.00 0.00 3.01
2063 2075 5.340803 ACCGCAGTGCATATATATACTTCG 58.659 41.667 16.83 9.43 31.37 3.79
2064 2076 5.105877 ACCGCAGTGCATATATATACTTCGT 60.106 40.000 16.83 3.67 29.96 3.85
2065 2077 5.230097 CCGCAGTGCATATATATACTTCGTG 59.770 44.000 16.83 4.42 29.96 4.35
2066 2078 5.800438 CGCAGTGCATATATATACTTCGTGT 59.200 40.000 16.83 0.00 0.00 4.49
2067 2079 6.237306 CGCAGTGCATATATATACTTCGTGTG 60.237 42.308 16.83 0.00 0.00 3.82
2068 2080 6.586463 GCAGTGCATATATATACTTCGTGTGT 59.414 38.462 11.09 0.00 0.00 3.72
2069 2081 7.410835 GCAGTGCATATATATACTTCGTGTGTG 60.411 40.741 11.09 0.00 0.00 3.82
2070 2082 6.586463 AGTGCATATATATACTTCGTGTGTGC 59.414 38.462 0.00 0.00 0.00 4.57
2071 2083 6.586463 GTGCATATATATACTTCGTGTGTGCT 59.414 38.462 9.41 0.00 0.00 4.40
2072 2084 7.116376 GTGCATATATATACTTCGTGTGTGCTT 59.884 37.037 9.41 0.00 0.00 3.91
2073 2085 8.301002 TGCATATATATACTTCGTGTGTGCTTA 58.699 33.333 9.41 0.00 0.00 3.09
2074 2086 8.799091 GCATATATATACTTCGTGTGTGCTTAG 58.201 37.037 0.00 0.00 0.00 2.18
2075 2087 9.290483 CATATATATACTTCGTGTGTGCTTAGG 57.710 37.037 0.00 0.00 0.00 2.69
2076 2088 2.074547 TACTTCGTGTGTGCTTAGGC 57.925 50.000 0.00 0.00 39.26 3.93
2077 2089 0.602905 ACTTCGTGTGTGCTTAGGCC 60.603 55.000 0.00 0.00 37.74 5.19
2078 2090 0.602638 CTTCGTGTGTGCTTAGGCCA 60.603 55.000 5.01 0.00 37.74 5.36
2079 2091 0.036164 TTCGTGTGTGCTTAGGCCAT 59.964 50.000 5.01 0.00 37.74 4.40
2080 2092 0.673333 TCGTGTGTGCTTAGGCCATG 60.673 55.000 5.01 0.00 37.74 3.66
2081 2093 0.955428 CGTGTGTGCTTAGGCCATGT 60.955 55.000 5.01 0.00 37.74 3.21
2082 2094 1.674519 CGTGTGTGCTTAGGCCATGTA 60.675 52.381 5.01 0.00 37.74 2.29
2083 2095 2.643551 GTGTGTGCTTAGGCCATGTAT 58.356 47.619 5.01 0.00 37.74 2.29
2084 2096 2.614057 GTGTGTGCTTAGGCCATGTATC 59.386 50.000 5.01 0.00 37.74 2.24
2085 2097 2.505407 TGTGTGCTTAGGCCATGTATCT 59.495 45.455 5.01 0.00 37.74 1.98
2086 2098 2.874701 GTGTGCTTAGGCCATGTATCTG 59.125 50.000 5.01 0.00 37.74 2.90
2087 2099 2.505407 TGTGCTTAGGCCATGTATCTGT 59.495 45.455 5.01 0.00 37.74 3.41
2088 2100 3.709141 TGTGCTTAGGCCATGTATCTGTA 59.291 43.478 5.01 0.00 37.74 2.74
2089 2101 4.347876 TGTGCTTAGGCCATGTATCTGTAT 59.652 41.667 5.01 0.00 37.74 2.29
2090 2102 5.542251 TGTGCTTAGGCCATGTATCTGTATA 59.458 40.000 5.01 0.00 37.74 1.47
2091 2103 5.869888 GTGCTTAGGCCATGTATCTGTATAC 59.130 44.000 5.01 0.00 37.09 1.47
2092 2104 5.780282 TGCTTAGGCCATGTATCTGTATACT 59.220 40.000 5.01 0.00 37.28 2.12
2093 2105 6.270000 TGCTTAGGCCATGTATCTGTATACTT 59.730 38.462 5.01 0.00 37.28 2.24
2094 2106 7.453439 TGCTTAGGCCATGTATCTGTATACTTA 59.547 37.037 5.01 0.00 37.28 2.24
2095 2107 8.478877 GCTTAGGCCATGTATCTGTATACTTAT 58.521 37.037 5.01 0.49 39.05 1.73
2100 2112 9.601217 GGCCATGTATCTGTATACTTATTTAGG 57.399 37.037 0.00 0.00 39.05 2.69
2101 2113 9.099454 GCCATGTATCTGTATACTTATTTAGGC 57.901 37.037 4.17 5.65 39.05 3.93
2102 2114 9.601217 CCATGTATCTGTATACTTATTTAGGCC 57.399 37.037 4.17 0.00 39.05 5.19
2135 2147 9.976511 ATGTATACTAGTATAACAAACATGCGT 57.023 29.630 21.51 7.09 30.60 5.24
2136 2148 9.806203 TGTATACTAGTATAACAAACATGCGTT 57.194 29.630 21.51 0.00 31.46 4.84
2138 2150 6.657836 ACTAGTATAACAAACATGCGTTCC 57.342 37.500 0.00 0.00 32.91 3.62
2139 2151 6.403878 ACTAGTATAACAAACATGCGTTCCT 58.596 36.000 0.00 0.00 32.91 3.36
2140 2152 5.545658 AGTATAACAAACATGCGTTCCTG 57.454 39.130 0.00 0.00 32.91 3.86
2141 2153 5.001232 AGTATAACAAACATGCGTTCCTGT 58.999 37.500 0.00 0.00 32.91 4.00
2142 2154 6.167685 AGTATAACAAACATGCGTTCCTGTA 58.832 36.000 0.00 0.00 32.91 2.74
2143 2155 6.821665 AGTATAACAAACATGCGTTCCTGTAT 59.178 34.615 0.00 0.00 32.91 2.29
2144 2156 4.846779 AACAAACATGCGTTCCTGTATT 57.153 36.364 0.00 0.00 32.91 1.89
2145 2157 4.419522 ACAAACATGCGTTCCTGTATTC 57.580 40.909 0.00 0.00 32.91 1.75
2146 2158 4.072131 ACAAACATGCGTTCCTGTATTCT 58.928 39.130 0.00 0.00 32.91 2.40
2147 2159 4.518970 ACAAACATGCGTTCCTGTATTCTT 59.481 37.500 0.00 0.00 32.91 2.52
2148 2160 5.009610 ACAAACATGCGTTCCTGTATTCTTT 59.990 36.000 0.00 0.00 32.91 2.52
2149 2161 5.705609 AACATGCGTTCCTGTATTCTTTT 57.294 34.783 0.00 0.00 0.00 2.27
2150 2162 5.705609 ACATGCGTTCCTGTATTCTTTTT 57.294 34.783 0.00 0.00 0.00 1.94
2180 2192 9.953697 TTCGTATATAAAATTGGTTTACCATGC 57.046 29.630 1.81 0.00 46.97 4.06
2181 2193 9.121658 TCGTATATAAAATTGGTTTACCATGCA 57.878 29.630 1.81 0.00 46.97 3.96
2182 2194 9.737427 CGTATATAAAATTGGTTTACCATGCAA 57.263 29.630 1.81 0.00 46.97 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.461773 CGGTCATCGGTGGGAGCT 61.462 66.667 0.00 0.00 34.75 4.09
40 42 4.679373 AGTGTACTAGGAGATGGCAATG 57.321 45.455 0.00 0.00 0.00 2.82
53 55 0.721154 CGTCGTGCCGTAGTGTACTA 59.279 55.000 0.00 0.00 0.00 1.82
62 64 1.153901 CTAATGACCGTCGTGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
88 90 6.270231 AGAAGTGGTCCAAGTACAAGAACTAT 59.730 38.462 0.00 0.00 0.00 2.12
190 192 1.519455 GACGCTGATTCCTGACCCG 60.519 63.158 0.00 0.00 0.00 5.28
233 235 1.669779 GGAATCTGATGCAGTGCTCAC 59.330 52.381 17.60 8.12 32.61 3.51
298 303 0.232303 GCACCAAGTTCGAGAACACG 59.768 55.000 17.00 7.91 43.47 4.49
363 368 2.852281 GCCAACCCCTTCCCTTGGA 61.852 63.158 0.00 0.00 37.25 3.53
397 402 2.485124 CCTCTCCATTGACATGAGCTCC 60.485 54.545 12.15 0.00 31.07 4.70
407 412 2.573462 CAACCTTCCTCCTCTCCATTGA 59.427 50.000 0.00 0.00 0.00 2.57
409 414 2.573915 GTCAACCTTCCTCCTCTCCATT 59.426 50.000 0.00 0.00 0.00 3.16
438 443 2.644151 ACTTACCCACCCCATCTCTTT 58.356 47.619 0.00 0.00 0.00 2.52
445 450 0.325860 ATCGCTACTTACCCACCCCA 60.326 55.000 0.00 0.00 0.00 4.96
461 466 0.251916 TTTACTCACCCTGCCCATCG 59.748 55.000 0.00 0.00 0.00 3.84
463 468 4.289672 CCTATATTTACTCACCCTGCCCAT 59.710 45.833 0.00 0.00 0.00 4.00
493 500 2.411628 TCACTCTTCTCCTCCTCTCG 57.588 55.000 0.00 0.00 0.00 4.04
513 520 5.619086 GCATGTAGTTAAAACGGCATGACTT 60.619 40.000 23.70 0.00 42.62 3.01
547 554 1.948834 CACAACACAGAGTTCATGGCA 59.051 47.619 0.00 0.00 38.74 4.92
571 578 0.473755 TGCACACAGTTCATGGAGGT 59.526 50.000 0.00 0.00 0.00 3.85
572 579 1.162698 CTGCACACAGTTCATGGAGG 58.837 55.000 0.00 0.00 39.22 4.30
582 589 2.619147 CTCTCCTCAATCTGCACACAG 58.381 52.381 0.00 0.00 45.95 3.66
594 601 1.767088 CCCATCTCATTGCTCTCCTCA 59.233 52.381 0.00 0.00 0.00 3.86
632 639 1.021202 CTTGCCCTTGTTGTCAACGA 58.979 50.000 11.03 8.28 0.00 3.85
673 680 2.042831 GCGGCAGCACAATCTCCTT 61.043 57.895 3.18 0.00 44.35 3.36
697 704 1.000607 CGTCTTCAGGTCTTCGTTGGA 60.001 52.381 0.00 0.00 0.00 3.53
700 707 0.319641 GGCGTCTTCAGGTCTTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
702 709 0.734253 CAGGCGTCTTCAGGTCTTCG 60.734 60.000 0.00 0.00 0.00 3.79
919 926 1.067212 CTCATGGTAGTGGCCGTAGTC 59.933 57.143 0.00 0.00 0.00 2.59
972 979 2.071540 CACTCAAGCTTCGATGCAAGA 58.928 47.619 23.42 18.20 34.99 3.02
979 986 0.391661 GGGATGCACTCAAGCTTCGA 60.392 55.000 0.00 0.00 38.98 3.71
1092 1100 1.003355 CACCCTGCCGTTCATCAGT 60.003 57.895 0.00 0.00 0.00 3.41
1113 1121 2.308722 GGCCCAACCCTGATCCAGA 61.309 63.158 0.00 0.00 32.44 3.86
1180 1188 0.244178 GTGTCGGGAGTGAGGAGTTC 59.756 60.000 0.00 0.00 0.00 3.01
1317 1325 6.233434 TCATAAACACTTCATTGCAGACTCT 58.767 36.000 0.00 0.00 0.00 3.24
1326 1334 9.075519 CAACGCATAAATCATAAACACTTCATT 57.924 29.630 0.00 0.00 0.00 2.57
1327 1335 8.458052 TCAACGCATAAATCATAAACACTTCAT 58.542 29.630 0.00 0.00 0.00 2.57
1332 1340 7.537306 ACAGTTCAACGCATAAATCATAAACAC 59.463 33.333 0.00 0.00 0.00 3.32
1407 1415 6.042638 AGCAGAGCAGAGTATAAACAAAGA 57.957 37.500 0.00 0.00 0.00 2.52
1410 1418 7.555965 TCATAAGCAGAGCAGAGTATAAACAA 58.444 34.615 0.00 0.00 0.00 2.83
1442 1450 4.439426 GCACACTTTGACACAACCATGTAA 60.439 41.667 0.00 0.00 37.82 2.41
1455 1463 2.171659 TGAGGTTACCAGCACACTTTGA 59.828 45.455 3.51 0.00 0.00 2.69
1491 1499 2.170817 TGCAACTGGTGTGTAGTAACCA 59.829 45.455 0.00 0.00 44.20 3.67
1529 1540 4.447138 TGTTAGTGGACAAACCCAAGAT 57.553 40.909 0.00 0.00 38.06 2.40
1530 1541 3.935818 TGTTAGTGGACAAACCCAAGA 57.064 42.857 0.00 0.00 38.06 3.02
1670 1682 6.093219 CAGTAGTTGCATTGCATACTCTTCTT 59.907 38.462 21.57 7.55 38.76 2.52
1676 1688 5.812642 GTCTACAGTAGTTGCATTGCATACT 59.187 40.000 21.61 21.61 38.76 2.12
1677 1689 5.812642 AGTCTACAGTAGTTGCATTGCATAC 59.187 40.000 12.95 12.65 38.76 2.39
1704 1716 0.519519 TTCGGGCATGTTTACTTGCG 59.480 50.000 12.70 3.10 44.85 4.85
1709 1721 2.095919 GTCACACTTCGGGCATGTTTAC 60.096 50.000 0.00 0.00 0.00 2.01
1710 1722 2.147958 GTCACACTTCGGGCATGTTTA 58.852 47.619 0.00 0.00 0.00 2.01
1716 1728 0.973632 AGTATGTCACACTTCGGGCA 59.026 50.000 0.00 0.00 0.00 5.36
1737 1749 2.011222 GTTGGTGTCGTTGAGGTTCAA 58.989 47.619 0.00 0.00 33.32 2.69
1738 1750 1.658994 GTTGGTGTCGTTGAGGTTCA 58.341 50.000 0.00 0.00 0.00 3.18
1739 1751 0.580104 CGTTGGTGTCGTTGAGGTTC 59.420 55.000 0.00 0.00 0.00 3.62
1740 1752 0.176219 TCGTTGGTGTCGTTGAGGTT 59.824 50.000 0.00 0.00 0.00 3.50
1741 1753 0.529119 GTCGTTGGTGTCGTTGAGGT 60.529 55.000 0.00 0.00 0.00 3.85
1742 1754 0.528901 TGTCGTTGGTGTCGTTGAGG 60.529 55.000 0.00 0.00 0.00 3.86
1743 1755 1.005347 GTTGTCGTTGGTGTCGTTGAG 60.005 52.381 0.00 0.00 0.00 3.02
1744 1756 1.000884 GTTGTCGTTGGTGTCGTTGA 58.999 50.000 0.00 0.00 0.00 3.18
1745 1757 0.314738 CGTTGTCGTTGGTGTCGTTG 60.315 55.000 0.00 0.00 0.00 4.10
1746 1758 0.458197 TCGTTGTCGTTGGTGTCGTT 60.458 50.000 0.00 0.00 38.33 3.85
1747 1759 0.249155 ATCGTTGTCGTTGGTGTCGT 60.249 50.000 0.00 0.00 38.33 4.34
1748 1760 0.433492 GATCGTTGTCGTTGGTGTCG 59.567 55.000 0.00 0.00 38.33 4.35
1749 1761 1.493772 TGATCGTTGTCGTTGGTGTC 58.506 50.000 0.00 0.00 38.33 3.67
1750 1762 2.066262 GATGATCGTTGTCGTTGGTGT 58.934 47.619 0.00 0.00 38.33 4.16
1751 1763 1.059122 CGATGATCGTTGTCGTTGGTG 59.941 52.381 6.68 0.00 38.33 4.17
1752 1764 1.346365 CGATGATCGTTGTCGTTGGT 58.654 50.000 6.68 0.00 38.33 3.67
1763 1775 2.174060 TGACGACAAGACGATGATCG 57.826 50.000 14.01 14.01 46.93 3.69
1764 1776 2.791560 CCATGACGACAAGACGATGATC 59.208 50.000 0.00 0.00 37.03 2.92
1765 1777 2.481969 CCCATGACGACAAGACGATGAT 60.482 50.000 0.00 0.00 37.03 2.45
1766 1778 1.135112 CCCATGACGACAAGACGATGA 60.135 52.381 0.00 0.00 37.03 2.92
1767 1779 1.135112 TCCCATGACGACAAGACGATG 60.135 52.381 0.00 0.00 37.03 3.84
1768 1780 1.135139 CTCCCATGACGACAAGACGAT 59.865 52.381 0.00 0.00 37.03 3.73
1769 1781 0.526211 CTCCCATGACGACAAGACGA 59.474 55.000 0.00 0.00 37.03 4.20
1770 1782 1.078759 GCTCCCATGACGACAAGACG 61.079 60.000 0.00 0.00 39.31 4.18
1771 1783 0.247736 AGCTCCCATGACGACAAGAC 59.752 55.000 0.00 0.00 0.00 3.01
1772 1784 0.532573 GAGCTCCCATGACGACAAGA 59.467 55.000 0.87 0.00 0.00 3.02
1773 1785 0.803768 CGAGCTCCCATGACGACAAG 60.804 60.000 8.47 0.00 0.00 3.16
1774 1786 1.215382 CGAGCTCCCATGACGACAA 59.785 57.895 8.47 0.00 0.00 3.18
1775 1787 2.710902 CCGAGCTCCCATGACGACA 61.711 63.158 8.47 0.00 0.00 4.35
1776 1788 2.105128 CCGAGCTCCCATGACGAC 59.895 66.667 8.47 0.00 0.00 4.34
1777 1789 3.838271 GCCGAGCTCCCATGACGA 61.838 66.667 8.47 0.00 0.00 4.20
1778 1790 3.376935 AAGCCGAGCTCCCATGACG 62.377 63.158 8.47 0.00 38.25 4.35
1779 1791 1.817099 CAAGCCGAGCTCCCATGAC 60.817 63.158 8.47 0.00 38.25 3.06
1780 1792 2.586245 CAAGCCGAGCTCCCATGA 59.414 61.111 8.47 0.00 38.25 3.07
1781 1793 3.207669 GCAAGCCGAGCTCCCATG 61.208 66.667 8.47 4.10 38.25 3.66
1782 1794 3.272364 TTGCAAGCCGAGCTCCCAT 62.272 57.895 8.47 0.00 38.25 4.00
1783 1795 3.907260 CTTGCAAGCCGAGCTCCCA 62.907 63.158 14.65 0.00 38.25 4.37
1784 1796 3.130160 CTTGCAAGCCGAGCTCCC 61.130 66.667 14.65 0.00 38.25 4.30
1785 1797 3.130160 CCTTGCAAGCCGAGCTCC 61.130 66.667 21.43 0.00 38.25 4.70
1786 1798 3.808656 GCCTTGCAAGCCGAGCTC 61.809 66.667 21.43 2.73 38.25 4.09
1787 1799 4.648626 TGCCTTGCAAGCCGAGCT 62.649 61.111 21.43 0.00 42.56 4.09
1788 1800 4.112341 CTGCCTTGCAAGCCGAGC 62.112 66.667 21.43 18.26 38.41 5.03
1789 1801 4.112341 GCTGCCTTGCAAGCCGAG 62.112 66.667 21.43 15.47 38.41 4.63
1790 1802 4.648626 AGCTGCCTTGCAAGCCGA 62.649 61.111 21.43 5.58 38.41 5.54
1791 1803 4.415332 CAGCTGCCTTGCAAGCCG 62.415 66.667 21.43 13.24 38.41 5.52
1792 1804 2.987547 TCAGCTGCCTTGCAAGCC 60.988 61.111 21.43 11.17 38.41 4.35
1793 1805 2.079020 TTGTCAGCTGCCTTGCAAGC 62.079 55.000 21.43 16.17 38.41 4.01
1794 1806 0.386476 TTTGTCAGCTGCCTTGCAAG 59.614 50.000 19.93 19.93 38.41 4.01
1795 1807 0.102844 GTTTGTCAGCTGCCTTGCAA 59.897 50.000 9.47 0.00 38.41 4.08
1796 1808 1.036481 TGTTTGTCAGCTGCCTTGCA 61.036 50.000 9.47 2.37 36.92 4.08
1797 1809 0.316204 ATGTTTGTCAGCTGCCTTGC 59.684 50.000 9.47 0.00 0.00 4.01
1798 1810 1.400629 CGATGTTTGTCAGCTGCCTTG 60.401 52.381 9.47 0.00 0.00 3.61
1799 1811 0.877071 CGATGTTTGTCAGCTGCCTT 59.123 50.000 9.47 0.00 0.00 4.35
1800 1812 0.035317 TCGATGTTTGTCAGCTGCCT 59.965 50.000 9.47 0.00 0.00 4.75
1801 1813 0.166814 GTCGATGTTTGTCAGCTGCC 59.833 55.000 9.47 0.00 0.00 4.85
1802 1814 0.867746 TGTCGATGTTTGTCAGCTGC 59.132 50.000 9.47 4.92 0.00 5.25
1803 1815 1.462283 CCTGTCGATGTTTGTCAGCTG 59.538 52.381 7.63 7.63 0.00 4.24
1804 1816 1.609061 CCCTGTCGATGTTTGTCAGCT 60.609 52.381 0.00 0.00 0.00 4.24
1805 1817 0.798776 CCCTGTCGATGTTTGTCAGC 59.201 55.000 0.00 0.00 0.00 4.26
1806 1818 0.798776 GCCCTGTCGATGTTTGTCAG 59.201 55.000 0.00 0.00 0.00 3.51
1807 1819 0.948623 CGCCCTGTCGATGTTTGTCA 60.949 55.000 0.00 0.00 0.00 3.58
1808 1820 1.787847 CGCCCTGTCGATGTTTGTC 59.212 57.895 0.00 0.00 0.00 3.18
1809 1821 2.325082 GCGCCCTGTCGATGTTTGT 61.325 57.895 0.00 0.00 0.00 2.83
1810 1822 2.034879 AGCGCCCTGTCGATGTTTG 61.035 57.895 2.29 0.00 0.00 2.93
1811 1823 2.034879 CAGCGCCCTGTCGATGTTT 61.035 57.895 2.29 0.00 40.52 2.83
1812 1824 2.434884 CAGCGCCCTGTCGATGTT 60.435 61.111 2.29 0.00 40.52 2.71
1813 1825 3.362399 CTCAGCGCCCTGTCGATGT 62.362 63.158 2.29 0.00 44.98 3.06
1814 1826 2.584418 CTCAGCGCCCTGTCGATG 60.584 66.667 2.29 0.00 45.95 3.84
1815 1827 3.842923 CCTCAGCGCCCTGTCGAT 61.843 66.667 2.29 0.00 40.09 3.59
1818 1830 4.767255 CCACCTCAGCGCCCTGTC 62.767 72.222 2.29 0.00 40.09 3.51
1820 1832 3.551496 TTTCCACCTCAGCGCCCTG 62.551 63.158 2.29 0.00 40.54 4.45
1821 1833 3.249189 TTTCCACCTCAGCGCCCT 61.249 61.111 2.29 0.00 0.00 5.19
1822 1834 2.747855 CTTTCCACCTCAGCGCCC 60.748 66.667 2.29 0.00 0.00 6.13
1823 1835 2.032681 ACTTTCCACCTCAGCGCC 59.967 61.111 2.29 0.00 0.00 6.53
1824 1836 2.970974 GCACTTTCCACCTCAGCGC 61.971 63.158 0.00 0.00 0.00 5.92
1825 1837 1.294659 GAGCACTTTCCACCTCAGCG 61.295 60.000 0.00 0.00 0.00 5.18
1826 1838 0.036022 AGAGCACTTTCCACCTCAGC 59.964 55.000 0.00 0.00 0.00 4.26
1827 1839 1.622811 AGAGAGCACTTTCCACCTCAG 59.377 52.381 0.00 0.00 0.00 3.35
1828 1840 1.345741 CAGAGAGCACTTTCCACCTCA 59.654 52.381 0.00 0.00 0.00 3.86
1829 1841 1.620819 TCAGAGAGCACTTTCCACCTC 59.379 52.381 0.00 0.00 0.00 3.85
1830 1842 1.722034 TCAGAGAGCACTTTCCACCT 58.278 50.000 0.00 0.00 0.00 4.00
1831 1843 2.777832 ATCAGAGAGCACTTTCCACC 57.222 50.000 0.00 0.00 0.00 4.61
1832 1844 4.322567 AGAAATCAGAGAGCACTTTCCAC 58.677 43.478 0.00 0.00 0.00 4.02
1833 1845 4.630644 AGAAATCAGAGAGCACTTTCCA 57.369 40.909 0.00 0.00 0.00 3.53
1834 1846 5.115480 CCTAGAAATCAGAGAGCACTTTCC 58.885 45.833 0.00 0.00 0.00 3.13
1835 1847 4.570369 GCCTAGAAATCAGAGAGCACTTTC 59.430 45.833 0.00 0.00 0.00 2.62
1836 1848 4.512484 GCCTAGAAATCAGAGAGCACTTT 58.488 43.478 0.00 0.00 0.00 2.66
1837 1849 3.430098 CGCCTAGAAATCAGAGAGCACTT 60.430 47.826 0.00 0.00 0.00 3.16
1838 1850 2.100584 CGCCTAGAAATCAGAGAGCACT 59.899 50.000 0.00 0.00 0.00 4.40
1839 1851 2.468831 CGCCTAGAAATCAGAGAGCAC 58.531 52.381 0.00 0.00 0.00 4.40
1840 1852 1.410517 CCGCCTAGAAATCAGAGAGCA 59.589 52.381 0.00 0.00 0.00 4.26
1841 1853 1.683917 TCCGCCTAGAAATCAGAGAGC 59.316 52.381 0.00 0.00 0.00 4.09
1842 1854 3.218453 TCTCCGCCTAGAAATCAGAGAG 58.782 50.000 0.00 0.00 0.00 3.20
1843 1855 3.298686 TCTCCGCCTAGAAATCAGAGA 57.701 47.619 0.00 0.00 0.00 3.10
1844 1856 3.571828 TCATCTCCGCCTAGAAATCAGAG 59.428 47.826 0.00 0.00 0.00 3.35
1845 1857 3.566351 TCATCTCCGCCTAGAAATCAGA 58.434 45.455 0.00 0.00 0.00 3.27
1846 1858 4.244066 CATCATCTCCGCCTAGAAATCAG 58.756 47.826 0.00 0.00 0.00 2.90
1847 1859 3.643320 ACATCATCTCCGCCTAGAAATCA 59.357 43.478 0.00 0.00 0.00 2.57
1848 1860 4.264460 ACATCATCTCCGCCTAGAAATC 57.736 45.455 0.00 0.00 0.00 2.17
1849 1861 4.141620 ACAACATCATCTCCGCCTAGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
1850 1862 3.197766 ACAACATCATCTCCGCCTAGAAA 59.802 43.478 0.00 0.00 0.00 2.52
1851 1863 2.766263 ACAACATCATCTCCGCCTAGAA 59.234 45.455 0.00 0.00 0.00 2.10
1852 1864 2.388735 ACAACATCATCTCCGCCTAGA 58.611 47.619 0.00 0.00 0.00 2.43
1853 1865 2.898729 ACAACATCATCTCCGCCTAG 57.101 50.000 0.00 0.00 0.00 3.02
1854 1866 2.034179 CGTACAACATCATCTCCGCCTA 59.966 50.000 0.00 0.00 0.00 3.93
1855 1867 1.202417 CGTACAACATCATCTCCGCCT 60.202 52.381 0.00 0.00 0.00 5.52
1856 1868 1.209128 CGTACAACATCATCTCCGCC 58.791 55.000 0.00 0.00 0.00 6.13
1857 1869 0.577269 GCGTACAACATCATCTCCGC 59.423 55.000 0.00 0.00 0.00 5.54
1858 1870 1.209128 GGCGTACAACATCATCTCCG 58.791 55.000 0.00 0.00 0.00 4.63
1859 1871 1.209128 CGGCGTACAACATCATCTCC 58.791 55.000 0.00 0.00 0.00 3.71
1860 1872 0.577269 GCGGCGTACAACATCATCTC 59.423 55.000 9.37 0.00 0.00 2.75
1861 1873 0.108377 TGCGGCGTACAACATCATCT 60.108 50.000 9.37 0.00 0.00 2.90
1862 1874 0.026285 GTGCGGCGTACAACATCATC 59.974 55.000 23.09 0.00 0.00 2.92
1863 1875 1.366111 GGTGCGGCGTACAACATCAT 61.366 55.000 28.25 0.00 0.00 2.45
1864 1876 2.030401 GGTGCGGCGTACAACATCA 61.030 57.895 28.25 2.78 0.00 3.07
1865 1877 2.782615 GGTGCGGCGTACAACATC 59.217 61.111 28.25 7.97 0.00 3.06
1866 1878 3.115892 CGGTGCGGCGTACAACAT 61.116 61.111 28.25 0.00 0.00 2.71
1867 1879 4.588854 ACGGTGCGGCGTACAACA 62.589 61.111 28.25 5.17 0.00 3.33
1868 1880 4.067016 CACGGTGCGGCGTACAAC 62.067 66.667 28.25 11.39 0.00 3.32
1869 1881 4.588854 ACACGGTGCGGCGTACAA 62.589 61.111 28.25 0.00 0.00 2.41
1876 1888 3.403057 CTTCGTCACACGGTGCGG 61.403 66.667 8.30 0.72 42.81 5.69
1877 1889 4.059459 GCTTCGTCACACGGTGCG 62.059 66.667 8.30 4.14 42.81 5.34
1878 1890 3.712881 GGCTTCGTCACACGGTGC 61.713 66.667 8.30 1.54 42.81 5.01
1879 1891 1.831389 CTTGGCTTCGTCACACGGTG 61.831 60.000 6.58 6.58 42.81 4.94
1880 1892 1.594293 CTTGGCTTCGTCACACGGT 60.594 57.895 0.00 0.00 42.81 4.83
1881 1893 2.317609 CCTTGGCTTCGTCACACGG 61.318 63.158 0.00 0.00 42.81 4.94
1882 1894 2.954753 GCCTTGGCTTCGTCACACG 61.955 63.158 4.11 0.00 44.19 4.49
1883 1895 2.617274 GGCCTTGGCTTCGTCACAC 61.617 63.158 11.71 0.00 0.00 3.82
1884 1896 2.281484 GGCCTTGGCTTCGTCACA 60.281 61.111 11.71 0.00 0.00 3.58
1885 1897 3.056328 GGGCCTTGGCTTCGTCAC 61.056 66.667 11.71 0.00 0.00 3.67
1886 1898 4.697756 CGGGCCTTGGCTTCGTCA 62.698 66.667 11.71 0.00 0.00 4.35
1910 1922 4.479993 CTCGCCAGGGCCTTCAGG 62.480 72.222 1.32 2.98 37.98 3.86
1911 1923 3.382803 CTCTCGCCAGGGCCTTCAG 62.383 68.421 1.32 0.00 37.98 3.02
1912 1924 3.393970 CTCTCGCCAGGGCCTTCA 61.394 66.667 1.32 0.00 37.98 3.02
1913 1925 4.168291 CCTCTCGCCAGGGCCTTC 62.168 72.222 1.32 0.00 37.98 3.46
1914 1926 4.722535 TCCTCTCGCCAGGGCCTT 62.723 66.667 1.32 0.00 37.98 4.35
1919 1931 4.465446 TCCCCTCCTCTCGCCAGG 62.465 72.222 0.00 0.00 34.40 4.45
1920 1932 2.837291 CTCCCCTCCTCTCGCCAG 60.837 72.222 0.00 0.00 0.00 4.85
1921 1933 3.239627 AACTCCCCTCCTCTCGCCA 62.240 63.158 0.00 0.00 0.00 5.69
1922 1934 2.364448 AACTCCCCTCCTCTCGCC 60.364 66.667 0.00 0.00 0.00 5.54
1923 1935 1.045911 ATGAACTCCCCTCCTCTCGC 61.046 60.000 0.00 0.00 0.00 5.03
1924 1936 1.036707 GATGAACTCCCCTCCTCTCG 58.963 60.000 0.00 0.00 0.00 4.04
1925 1937 1.760029 GTGATGAACTCCCCTCCTCTC 59.240 57.143 0.00 0.00 0.00 3.20
1926 1938 1.872773 GTGATGAACTCCCCTCCTCT 58.127 55.000 0.00 0.00 0.00 3.69
1927 1939 0.461961 CGTGATGAACTCCCCTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
1928 1940 1.617947 GCGTGATGAACTCCCCTCCT 61.618 60.000 0.00 0.00 0.00 3.69
1929 1941 1.153349 GCGTGATGAACTCCCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
1930 1942 0.741221 GTGCGTGATGAACTCCCCTC 60.741 60.000 0.00 0.00 0.00 4.30
1931 1943 1.296715 GTGCGTGATGAACTCCCCT 59.703 57.895 0.00 0.00 0.00 4.79
1932 1944 1.745489 GGTGCGTGATGAACTCCCC 60.745 63.158 0.00 0.00 0.00 4.81
1933 1945 1.021390 CAGGTGCGTGATGAACTCCC 61.021 60.000 0.00 0.00 0.00 4.30
1934 1946 0.320771 ACAGGTGCGTGATGAACTCC 60.321 55.000 0.00 0.00 0.00 3.85
1935 1947 0.792640 CACAGGTGCGTGATGAACTC 59.207 55.000 0.00 0.00 39.34 3.01
1936 1948 0.603707 CCACAGGTGCGTGATGAACT 60.604 55.000 0.00 0.00 39.34 3.01
1937 1949 1.577328 CCCACAGGTGCGTGATGAAC 61.577 60.000 0.00 0.00 39.34 3.18
1938 1950 1.302431 CCCACAGGTGCGTGATGAA 60.302 57.895 0.00 0.00 39.34 2.57
1939 1951 2.347114 CCCACAGGTGCGTGATGA 59.653 61.111 0.00 0.00 39.34 2.92
1940 1952 3.434319 GCCCACAGGTGCGTGATG 61.434 66.667 0.00 0.00 39.34 3.07
1978 1990 4.383861 CAGTGCCTCGCTCCAGCA 62.384 66.667 0.00 0.00 42.21 4.41
1979 1991 4.385405 ACAGTGCCTCGCTCCAGC 62.385 66.667 0.00 0.00 37.78 4.85
1980 1992 2.125753 GACAGTGCCTCGCTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
1981 1993 4.056125 CGACAGTGCCTCGCTCCA 62.056 66.667 0.00 0.00 0.00 3.86
1982 1994 4.803426 CCGACAGTGCCTCGCTCC 62.803 72.222 0.00 0.00 0.00 4.70
1983 1995 3.749064 TCCGACAGTGCCTCGCTC 61.749 66.667 0.00 0.00 0.00 5.03
1984 1996 4.057428 GTCCGACAGTGCCTCGCT 62.057 66.667 0.00 0.00 0.00 4.93
1986 1998 3.680786 TGGTCCGACAGTGCCTCG 61.681 66.667 0.00 0.00 0.00 4.63
1987 1999 2.048127 GTGGTCCGACAGTGCCTC 60.048 66.667 0.00 0.00 0.00 4.70
1988 2000 2.524394 AGTGGTCCGACAGTGCCT 60.524 61.111 0.00 0.00 0.00 4.75
1989 2001 2.357517 CAGTGGTCCGACAGTGCC 60.358 66.667 0.00 0.00 35.26 5.01
1990 2002 2.172483 ATCCAGTGGTCCGACAGTGC 62.172 60.000 9.54 0.00 39.82 4.40
1991 2003 0.390340 CATCCAGTGGTCCGACAGTG 60.390 60.000 9.54 0.00 40.62 3.66
1992 2004 1.975327 CATCCAGTGGTCCGACAGT 59.025 57.895 9.54 0.00 0.00 3.55
1993 2005 1.448540 GCATCCAGTGGTCCGACAG 60.449 63.158 9.54 0.00 0.00 3.51
1994 2006 2.662596 GCATCCAGTGGTCCGACA 59.337 61.111 9.54 0.00 0.00 4.35
1995 2007 2.125106 GGCATCCAGTGGTCCGAC 60.125 66.667 9.54 0.00 0.00 4.79
1996 2008 3.770040 CGGCATCCAGTGGTCCGA 61.770 66.667 25.27 2.89 42.43 4.55
1997 2009 4.082523 ACGGCATCCAGTGGTCCG 62.083 66.667 26.65 26.65 45.04 4.79
1998 2010 2.436646 CACGGCATCCAGTGGTCC 60.437 66.667 9.54 8.30 34.93 4.46
1999 2011 2.034879 CACACGGCATCCAGTGGTC 61.035 63.158 9.54 0.00 42.25 4.02
2000 2012 2.032528 CACACGGCATCCAGTGGT 59.967 61.111 9.54 0.00 42.25 4.16
2001 2013 2.034879 GTCACACGGCATCCAGTGG 61.035 63.158 1.40 1.40 42.25 4.00
2002 2014 2.034879 GGTCACACGGCATCCAGTG 61.035 63.158 0.00 0.00 43.46 3.66
2003 2015 2.347490 GGTCACACGGCATCCAGT 59.653 61.111 0.00 0.00 0.00 4.00
2004 2016 2.578163 ATCGGTCACACGGCATCCAG 62.578 60.000 0.00 0.00 0.00 3.86
2005 2017 2.178876 AATCGGTCACACGGCATCCA 62.179 55.000 0.00 0.00 0.00 3.41
2006 2018 1.429148 GAATCGGTCACACGGCATCC 61.429 60.000 0.00 0.00 0.00 3.51
2007 2019 1.429148 GGAATCGGTCACACGGCATC 61.429 60.000 0.00 0.00 0.00 3.91
2008 2020 1.449601 GGAATCGGTCACACGGCAT 60.450 57.895 0.00 0.00 0.00 4.40
2009 2021 2.047655 GGAATCGGTCACACGGCA 60.048 61.111 0.00 0.00 0.00 5.69
2010 2022 1.024579 AATGGAATCGGTCACACGGC 61.025 55.000 0.00 0.00 0.00 5.68
2011 2023 1.006832 GAATGGAATCGGTCACACGG 58.993 55.000 0.00 0.00 0.00 4.94
2012 2024 1.720805 TGAATGGAATCGGTCACACG 58.279 50.000 0.00 0.00 0.00 4.49
2013 2025 2.159517 GCTTGAATGGAATCGGTCACAC 60.160 50.000 0.00 0.00 0.00 3.82
2014 2026 2.083774 GCTTGAATGGAATCGGTCACA 58.916 47.619 0.00 0.00 0.00 3.58
2015 2027 1.401905 GGCTTGAATGGAATCGGTCAC 59.598 52.381 0.00 0.00 0.00 3.67
2016 2028 1.281867 AGGCTTGAATGGAATCGGTCA 59.718 47.619 0.00 0.00 0.00 4.02
2017 2029 1.943340 GAGGCTTGAATGGAATCGGTC 59.057 52.381 0.00 0.00 0.00 4.79
2018 2030 1.408822 GGAGGCTTGAATGGAATCGGT 60.409 52.381 0.00 0.00 0.00 4.69
2019 2031 1.312815 GGAGGCTTGAATGGAATCGG 58.687 55.000 0.00 0.00 0.00 4.18
2020 2032 2.042686 TGGAGGCTTGAATGGAATCG 57.957 50.000 0.00 0.00 0.00 3.34
2021 2033 2.428530 GGTTGGAGGCTTGAATGGAATC 59.571 50.000 0.00 0.00 0.00 2.52
2022 2034 2.460669 GGTTGGAGGCTTGAATGGAAT 58.539 47.619 0.00 0.00 0.00 3.01
2023 2035 1.886222 CGGTTGGAGGCTTGAATGGAA 60.886 52.381 0.00 0.00 0.00 3.53
2024 2036 0.322456 CGGTTGGAGGCTTGAATGGA 60.322 55.000 0.00 0.00 0.00 3.41
2025 2037 1.937546 GCGGTTGGAGGCTTGAATGG 61.938 60.000 0.00 0.00 0.00 3.16
2026 2038 1.243342 TGCGGTTGGAGGCTTGAATG 61.243 55.000 0.00 0.00 0.00 2.67
2027 2039 0.962356 CTGCGGTTGGAGGCTTGAAT 60.962 55.000 0.00 0.00 0.00 2.57
2028 2040 1.600636 CTGCGGTTGGAGGCTTGAA 60.601 57.895 0.00 0.00 0.00 2.69
2029 2041 2.032528 CTGCGGTTGGAGGCTTGA 59.967 61.111 0.00 0.00 0.00 3.02
2030 2042 2.281761 ACTGCGGTTGGAGGCTTG 60.282 61.111 0.00 0.00 37.98 4.01
2031 2043 2.281761 CACTGCGGTTGGAGGCTT 60.282 61.111 0.00 0.00 37.98 4.35
2033 2045 6.893308 TATATATGCACTGCGGTTGGAGGC 62.893 50.000 0.00 0.00 37.98 4.70
2034 2046 0.464373 ATATGCACTGCGGTTGGAGG 60.464 55.000 0.00 0.00 37.98 4.30
2035 2047 2.238942 TATATGCACTGCGGTTGGAG 57.761 50.000 0.00 0.00 39.85 3.86
2036 2048 2.928801 ATATATGCACTGCGGTTGGA 57.071 45.000 0.00 0.00 0.00 3.53
2037 2049 5.419542 AGTATATATATGCACTGCGGTTGG 58.580 41.667 12.61 0.00 0.00 3.77
2038 2050 6.237569 CGAAGTATATATATGCACTGCGGTTG 60.238 42.308 14.60 0.00 36.59 3.77
2039 2051 5.805486 CGAAGTATATATATGCACTGCGGTT 59.195 40.000 14.60 0.34 36.59 4.44
2040 2052 5.105877 ACGAAGTATATATATGCACTGCGGT 60.106 40.000 21.96 10.71 43.04 5.68
2041 2053 5.230097 CACGAAGTATATATATGCACTGCGG 59.770 44.000 21.96 12.16 43.04 5.69
2042 2054 5.800438 ACACGAAGTATATATATGCACTGCG 59.200 40.000 18.58 18.58 41.61 5.18
2043 2055 6.586463 ACACACGAAGTATATATATGCACTGC 59.414 38.462 12.61 4.05 41.61 4.40
2044 2056 7.410835 GCACACACGAAGTATATATATGCACTG 60.411 40.741 12.61 4.65 41.61 3.66
2045 2057 6.586463 GCACACACGAAGTATATATATGCACT 59.414 38.462 12.61 3.39 41.61 4.40
2046 2058 6.586463 AGCACACACGAAGTATATATATGCAC 59.414 38.462 12.61 1.17 41.61 4.57
2047 2059 6.687604 AGCACACACGAAGTATATATATGCA 58.312 36.000 12.61 0.00 41.61 3.96
2048 2060 7.582435 AAGCACACACGAAGTATATATATGC 57.418 36.000 5.44 4.07 41.61 3.14
2049 2061 9.290483 CCTAAGCACACACGAAGTATATATATG 57.710 37.037 5.44 0.00 41.61 1.78
2050 2062 7.974501 GCCTAAGCACACACGAAGTATATATAT 59.025 37.037 0.00 0.00 37.64 0.86
2051 2063 7.310664 GCCTAAGCACACACGAAGTATATATA 58.689 38.462 0.00 0.00 37.64 0.86
2052 2064 6.157211 GCCTAAGCACACACGAAGTATATAT 58.843 40.000 0.00 0.00 37.64 0.86
2053 2065 5.508489 GGCCTAAGCACACACGAAGTATATA 60.508 44.000 0.00 0.00 39.53 0.86
2054 2066 4.369182 GCCTAAGCACACACGAAGTATAT 58.631 43.478 0.00 0.00 37.64 0.86
2055 2067 3.429822 GGCCTAAGCACACACGAAGTATA 60.430 47.826 0.00 0.00 39.53 1.47
2056 2068 2.618053 GCCTAAGCACACACGAAGTAT 58.382 47.619 0.00 0.00 37.64 2.12
2057 2069 1.337447 GGCCTAAGCACACACGAAGTA 60.337 52.381 0.00 0.00 39.53 2.24
2058 2070 0.602905 GGCCTAAGCACACACGAAGT 60.603 55.000 0.00 0.00 42.26 3.01
2059 2071 0.602638 TGGCCTAAGCACACACGAAG 60.603 55.000 3.32 0.00 42.56 3.79
2060 2072 0.036164 ATGGCCTAAGCACACACGAA 59.964 50.000 3.32 0.00 42.56 3.85
2061 2073 0.673333 CATGGCCTAAGCACACACGA 60.673 55.000 3.32 0.00 42.56 4.35
2062 2074 0.955428 ACATGGCCTAAGCACACACG 60.955 55.000 3.32 0.00 42.56 4.49
2063 2075 2.107950 TACATGGCCTAAGCACACAC 57.892 50.000 3.32 0.00 42.56 3.82
2064 2076 2.505407 AGATACATGGCCTAAGCACACA 59.495 45.455 3.32 0.00 42.56 3.72
2065 2077 2.874701 CAGATACATGGCCTAAGCACAC 59.125 50.000 3.32 0.00 42.56 3.82
2066 2078 2.505407 ACAGATACATGGCCTAAGCACA 59.495 45.455 3.32 0.00 42.56 4.57
2067 2079 3.199880 ACAGATACATGGCCTAAGCAC 57.800 47.619 3.32 0.00 42.56 4.40
2068 2080 5.780282 AGTATACAGATACATGGCCTAAGCA 59.220 40.000 3.32 0.00 40.51 3.91
2069 2081 6.287589 AGTATACAGATACATGGCCTAAGC 57.712 41.667 3.32 0.00 40.51 3.09
2074 2086 9.601217 CCTAAATAAGTATACAGATACATGGCC 57.399 37.037 5.50 0.00 40.51 5.36
2075 2087 9.099454 GCCTAAATAAGTATACAGATACATGGC 57.901 37.037 5.50 6.16 40.51 4.40
2076 2088 9.601217 GGCCTAAATAAGTATACAGATACATGG 57.399 37.037 5.50 0.00 40.51 3.66
2109 2121 9.976511 ACGCATGTTTGTTATACTAGTATACAT 57.023 29.630 20.01 18.36 0.00 2.29
2110 2122 9.806203 AACGCATGTTTGTTATACTAGTATACA 57.194 29.630 20.01 17.12 33.53 2.29
2112 2124 9.467258 GGAACGCATGTTTGTTATACTAGTATA 57.533 33.333 17.03 17.03 38.78 1.47
2113 2125 8.202137 AGGAACGCATGTTTGTTATACTAGTAT 58.798 33.333 19.07 19.07 38.78 2.12
2114 2126 7.490079 CAGGAACGCATGTTTGTTATACTAGTA 59.510 37.037 4.77 4.77 38.78 1.82
2115 2127 6.312918 CAGGAACGCATGTTTGTTATACTAGT 59.687 38.462 0.00 0.00 38.78 2.57
2116 2128 6.312918 ACAGGAACGCATGTTTGTTATACTAG 59.687 38.462 0.00 0.00 35.07 2.57
2117 2129 6.167685 ACAGGAACGCATGTTTGTTATACTA 58.832 36.000 0.00 0.00 35.07 1.82
2118 2130 5.001232 ACAGGAACGCATGTTTGTTATACT 58.999 37.500 0.00 0.00 35.07 2.12
2119 2131 5.291293 ACAGGAACGCATGTTTGTTATAC 57.709 39.130 0.00 0.00 35.07 1.47
2120 2132 7.551262 AGAATACAGGAACGCATGTTTGTTATA 59.449 33.333 0.00 0.00 40.01 0.98
2121 2133 6.374333 AGAATACAGGAACGCATGTTTGTTAT 59.626 34.615 0.00 0.00 40.01 1.89
2122 2134 5.703592 AGAATACAGGAACGCATGTTTGTTA 59.296 36.000 0.00 0.00 40.01 2.41
2123 2135 4.518970 AGAATACAGGAACGCATGTTTGTT 59.481 37.500 0.00 0.00 40.01 2.83
2124 2136 4.072131 AGAATACAGGAACGCATGTTTGT 58.928 39.130 0.00 0.00 40.01 2.83
2125 2137 4.685169 AGAATACAGGAACGCATGTTTG 57.315 40.909 0.00 0.00 40.01 2.93
2126 2138 5.705609 AAAGAATACAGGAACGCATGTTT 57.294 34.783 0.00 0.00 40.01 2.83
2127 2139 5.705609 AAAAGAATACAGGAACGCATGTT 57.294 34.783 0.00 0.00 40.01 2.71
2128 2140 5.705609 AAAAAGAATACAGGAACGCATGT 57.294 34.783 0.00 0.00 42.42 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.