Multiple sequence alignment - TraesCS6B01G417800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G417800 chr6B 100.000 2474 0 0 1 2474 690048479 690046006 0.000000e+00 4569.0
1 TraesCS6B01G417800 chr6B 90.824 1275 95 14 694 1951 690177047 690175778 0.000000e+00 1687.0
2 TraesCS6B01G417800 chr6B 98.848 521 6 0 1954 2474 690041736 690041216 0.000000e+00 929.0
3 TraesCS6B01G417800 chr6B 98.282 524 8 1 1952 2474 52749147 52748624 0.000000e+00 917.0
4 TraesCS6B01G417800 chr6B 93.800 500 29 2 375 872 690177317 690176818 0.000000e+00 750.0
5 TraesCS6B01G417800 chr6B 78.360 744 134 21 842 1572 690894326 690895055 8.060000e-125 457.0
6 TraesCS6B01G417800 chr6B 75.184 407 71 24 842 1240 690969213 690969597 5.470000e-37 165.0
7 TraesCS6B01G417800 chr6B 72.337 629 131 36 965 1578 689996507 689995907 9.160000e-35 158.0
8 TraesCS6B01G417800 chr6B 93.617 47 0 2 75 121 540427302 540427345 1.590000e-07 67.6
9 TraesCS6B01G417800 chr6B 97.500 40 0 1 82 121 560352111 560352073 1.590000e-07 67.6
10 TraesCS6B01G417800 chr6B 82.353 85 6 1 645 729 690176892 690176817 5.710000e-07 65.8
11 TraesCS6B01G417800 chr6D 91.615 1598 96 19 376 1951 454017651 454016070 0.000000e+00 2174.0
12 TraesCS6B01G417800 chr6D 78.571 742 136 19 842 1572 454404719 454405448 3.730000e-128 468.0
13 TraesCS6B01G417800 chr6D 77.372 411 73 16 842 1245 454492634 454493031 2.480000e-55 226.0
14 TraesCS6B01G417800 chr6D 91.250 80 7 0 5 84 228265764 228265685 2.600000e-20 110.0
15 TraesCS6B01G417800 chr6D 92.308 52 1 2 692 742 454017185 454017136 1.230000e-08 71.3
16 TraesCS6B01G417800 chr6A 94.284 1347 68 5 375 1719 600376947 600375608 0.000000e+00 2052.0
17 TraesCS6B01G417800 chr6A 78.600 743 135 20 842 1572 600566269 600566999 1.040000e-128 470.0
18 TraesCS6B01G417800 chr6A 80.625 320 50 10 931 1245 600702294 600702606 1.140000e-58 237.0
19 TraesCS6B01G417800 chr6A 90.361 83 8 0 2 84 362922817 362922899 2.600000e-20 110.0
20 TraesCS6B01G417800 chr6A 97.500 40 1 0 692 731 600376487 600376448 4.410000e-08 69.4
21 TraesCS6B01G417800 chr5B 98.470 523 8 0 1952 2474 46671831 46672353 0.000000e+00 922.0
22 TraesCS6B01G417800 chr5B 90.361 83 8 0 2 84 255303604 255303686 2.600000e-20 110.0
23 TraesCS6B01G417800 chr5B 91.304 46 2 1 67 112 439790214 439790171 7.390000e-06 62.1
24 TraesCS6B01G417800 chr4B 98.470 523 8 0 1952 2474 581035150 581035672 0.000000e+00 922.0
25 TraesCS6B01G417800 chr4B 91.250 80 7 0 5 84 144652883 144652804 2.600000e-20 110.0
26 TraesCS6B01G417800 chr7B 98.467 522 8 0 1952 2473 641536042 641535521 0.000000e+00 920.0
27 TraesCS6B01G417800 chr7B 98.279 523 9 0 1952 2474 741615000 741614478 0.000000e+00 917.0
28 TraesCS6B01G417800 chr7B 97.500 40 1 0 82 121 513165144 513165183 4.410000e-08 69.4
29 TraesCS6B01G417800 chr3B 98.106 528 9 1 1948 2474 587017658 587017131 0.000000e+00 918.0
30 TraesCS6B01G417800 chr3B 78.996 757 122 27 836 1578 160676817 160677550 1.330000e-132 483.0
31 TraesCS6B01G417800 chr1B 98.106 528 9 1 1947 2474 451216126 451216652 0.000000e+00 918.0
32 TraesCS6B01G417800 chr2B 98.279 523 9 0 1952 2474 440236998 440236476 0.000000e+00 917.0
33 TraesCS6B01G417800 chr2B 91.765 85 3 3 2 84 188840139 188840221 5.590000e-22 115.0
34 TraesCS6B01G417800 chr3D 79.073 755 117 31 840 1578 109306028 109306757 4.790000e-132 481.0
35 TraesCS6B01G417800 chr3D 92.208 77 6 0 8 84 208634427 208634351 2.600000e-20 110.0
36 TraesCS6B01G417800 chr3D 87.097 62 8 0 1658 1719 482192094 482192155 1.230000e-08 71.3
37 TraesCS6B01G417800 chr5D 91.250 80 7 0 5 84 237631041 237630962 2.600000e-20 110.0
38 TraesCS6B01G417800 chr5D 91.250 80 7 0 5 84 278122988 278122909 2.600000e-20 110.0
39 TraesCS6B01G417800 chr5D 93.478 46 1 2 82 127 416561624 416561667 1.590000e-07 67.6
40 TraesCS6B01G417800 chr3A 91.250 80 7 0 5 84 329494389 329494310 2.600000e-20 110.0
41 TraesCS6B01G417800 chr3A 100.000 33 0 0 80 112 100522659 100522627 7.390000e-06 62.1
42 TraesCS6B01G417800 chr3A 91.304 46 2 1 67 112 275637620 275637577 7.390000e-06 62.1
43 TraesCS6B01G417800 chr4D 97.500 40 1 0 82 121 191667883 191667922 4.410000e-08 69.4
44 TraesCS6B01G417800 chr7D 100.000 35 0 0 80 114 446735705 446735739 5.710000e-07 65.8
45 TraesCS6B01G417800 chr7D 97.297 37 0 1 80 115 459152721 459152685 7.390000e-06 62.1
46 TraesCS6B01G417800 chr7A 100.000 34 0 0 80 113 229340700 229340667 2.050000e-06 63.9
47 TraesCS6B01G417800 chr1D 90.000 50 4 1 82 131 279892165 279892213 2.050000e-06 63.9
48 TraesCS6B01G417800 chr2D 93.023 43 1 1 70 112 326043893 326043853 7.390000e-06 62.1
49 TraesCS6B01G417800 chr1A 88.462 52 4 2 82 133 453022659 453022610 7.390000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G417800 chr6B 690046006 690048479 2473 True 4569.000000 4569 100.000000 1 2474 1 chr6B.!!$R5 2473
1 TraesCS6B01G417800 chr6B 690041216 690041736 520 True 929.000000 929 98.848000 1954 2474 1 chr6B.!!$R4 520
2 TraesCS6B01G417800 chr6B 52748624 52749147 523 True 917.000000 917 98.282000 1952 2474 1 chr6B.!!$R1 522
3 TraesCS6B01G417800 chr6B 690175778 690177317 1539 True 834.266667 1687 88.992333 375 1951 3 chr6B.!!$R6 1576
4 TraesCS6B01G417800 chr6B 690894326 690895055 729 False 457.000000 457 78.360000 842 1572 1 chr6B.!!$F2 730
5 TraesCS6B01G417800 chr6D 454016070 454017651 1581 True 1122.650000 2174 91.961500 376 1951 2 chr6D.!!$R2 1575
6 TraesCS6B01G417800 chr6D 454404719 454405448 729 False 468.000000 468 78.571000 842 1572 1 chr6D.!!$F1 730
7 TraesCS6B01G417800 chr6A 600375608 600376947 1339 True 1060.700000 2052 95.892000 375 1719 2 chr6A.!!$R1 1344
8 TraesCS6B01G417800 chr6A 600566269 600566999 730 False 470.000000 470 78.600000 842 1572 1 chr6A.!!$F2 730
9 TraesCS6B01G417800 chr5B 46671831 46672353 522 False 922.000000 922 98.470000 1952 2474 1 chr5B.!!$F1 522
10 TraesCS6B01G417800 chr4B 581035150 581035672 522 False 922.000000 922 98.470000 1952 2474 1 chr4B.!!$F1 522
11 TraesCS6B01G417800 chr7B 641535521 641536042 521 True 920.000000 920 98.467000 1952 2473 1 chr7B.!!$R1 521
12 TraesCS6B01G417800 chr7B 741614478 741615000 522 True 917.000000 917 98.279000 1952 2474 1 chr7B.!!$R2 522
13 TraesCS6B01G417800 chr3B 587017131 587017658 527 True 918.000000 918 98.106000 1948 2474 1 chr3B.!!$R1 526
14 TraesCS6B01G417800 chr3B 160676817 160677550 733 False 483.000000 483 78.996000 836 1578 1 chr3B.!!$F1 742
15 TraesCS6B01G417800 chr1B 451216126 451216652 526 False 918.000000 918 98.106000 1947 2474 1 chr1B.!!$F1 527
16 TraesCS6B01G417800 chr2B 440236476 440236998 522 True 917.000000 917 98.279000 1952 2474 1 chr2B.!!$R1 522
17 TraesCS6B01G417800 chr3D 109306028 109306757 729 False 481.000000 481 79.073000 840 1578 1 chr3D.!!$F1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.026285 GACGACATTATGTGCCACGC 59.974 55.0 1.24 0.0 0.0 5.34 F
260 261 0.026674 CGACATTATGTGCCACGCTG 59.973 55.0 1.24 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1405 1.893137 AGCCGGATCTATGCATAACGA 59.107 47.619 5.05 2.96 0.0 3.85 R
1637 1663 2.291209 TTCACCATCCACATGCAAGT 57.709 45.000 0.00 0.00 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.102052 TGTTGGACCGACTAGAACAAC 57.898 47.619 13.25 0.00 38.81 3.32
21 22 2.696707 TGTTGGACCGACTAGAACAACT 59.303 45.455 13.25 0.00 39.03 3.16
22 23 3.243636 TGTTGGACCGACTAGAACAACTC 60.244 47.826 13.25 0.00 39.03 3.01
23 24 1.538512 TGGACCGACTAGAACAACTCG 59.461 52.381 0.00 0.00 0.00 4.18
24 25 1.538950 GGACCGACTAGAACAACTCGT 59.461 52.381 0.00 0.00 0.00 4.18
25 26 2.030451 GGACCGACTAGAACAACTCGTT 60.030 50.000 0.00 0.00 41.86 3.85
26 27 2.978489 GACCGACTAGAACAACTCGTTG 59.022 50.000 8.16 8.16 45.58 4.10
37 38 3.090312 CAACTCGTTGTAAGCGATGTG 57.910 47.619 1.71 0.00 37.74 3.21
38 39 1.068474 ACTCGTTGTAAGCGATGTGC 58.932 50.000 0.00 0.00 46.98 4.57
39 40 4.942934 CAACTCGTTGTAAGCGATGTGCT 61.943 47.826 1.71 0.00 45.17 4.40
40 41 5.661670 CAACTCGTTGTAAGCGATGTGCTA 61.662 45.833 1.71 0.00 43.70 3.49
41 42 7.388951 CAACTCGTTGTAAGCGATGTGCTAG 62.389 48.000 1.71 0.00 43.70 3.42
48 49 2.906047 GCGATGTGCTAGGGCTTAG 58.094 57.895 0.00 0.00 41.73 2.18
49 50 0.601311 GCGATGTGCTAGGGCTTAGG 60.601 60.000 5.75 0.00 41.73 2.69
50 51 0.034059 CGATGTGCTAGGGCTTAGGG 59.966 60.000 5.75 0.00 39.59 3.53
51 52 1.424638 GATGTGCTAGGGCTTAGGGA 58.575 55.000 5.75 0.00 39.59 4.20
52 53 1.768870 GATGTGCTAGGGCTTAGGGAA 59.231 52.381 5.75 0.00 39.59 3.97
53 54 1.663911 TGTGCTAGGGCTTAGGGAAA 58.336 50.000 5.75 0.00 39.59 3.13
54 55 1.989586 TGTGCTAGGGCTTAGGGAAAA 59.010 47.619 5.75 0.00 39.59 2.29
55 56 2.580783 TGTGCTAGGGCTTAGGGAAAAT 59.419 45.455 5.75 0.00 39.59 1.82
56 57 3.783642 TGTGCTAGGGCTTAGGGAAAATA 59.216 43.478 5.75 0.00 39.59 1.40
57 58 4.415512 TGTGCTAGGGCTTAGGGAAAATAT 59.584 41.667 5.75 0.00 39.59 1.28
58 59 5.004448 GTGCTAGGGCTTAGGGAAAATATC 58.996 45.833 5.75 0.00 39.59 1.63
59 60 4.663120 TGCTAGGGCTTAGGGAAAATATCA 59.337 41.667 5.75 0.00 39.59 2.15
60 61 5.133660 TGCTAGGGCTTAGGGAAAATATCAA 59.866 40.000 5.75 0.00 39.59 2.57
61 62 5.473846 GCTAGGGCTTAGGGAAAATATCAAC 59.526 44.000 5.75 0.00 35.22 3.18
62 63 5.734031 AGGGCTTAGGGAAAATATCAACT 57.266 39.130 0.00 0.00 0.00 3.16
63 64 5.696030 AGGGCTTAGGGAAAATATCAACTC 58.304 41.667 0.00 0.00 0.00 3.01
64 65 4.515567 GGGCTTAGGGAAAATATCAACTCG 59.484 45.833 0.00 0.00 0.00 4.18
65 66 4.515567 GGCTTAGGGAAAATATCAACTCGG 59.484 45.833 0.00 0.00 0.00 4.63
66 67 5.123936 GCTTAGGGAAAATATCAACTCGGT 58.876 41.667 0.00 0.00 0.00 4.69
67 68 5.007724 GCTTAGGGAAAATATCAACTCGGTG 59.992 44.000 0.00 0.00 0.00 4.94
68 69 3.886123 AGGGAAAATATCAACTCGGTGG 58.114 45.455 0.00 0.00 0.00 4.61
69 70 2.357952 GGGAAAATATCAACTCGGTGGC 59.642 50.000 0.00 0.00 0.00 5.01
70 71 3.013921 GGAAAATATCAACTCGGTGGCA 58.986 45.455 0.00 0.00 0.00 4.92
71 72 3.181500 GGAAAATATCAACTCGGTGGCAC 60.181 47.826 9.70 9.70 0.00 5.01
72 73 3.350219 AAATATCAACTCGGTGGCACT 57.650 42.857 18.45 0.00 0.00 4.40
73 74 2.315925 ATATCAACTCGGTGGCACTG 57.684 50.000 20.50 20.50 0.00 3.66
74 75 1.262417 TATCAACTCGGTGGCACTGA 58.738 50.000 26.49 26.49 31.67 3.41
75 76 0.615331 ATCAACTCGGTGGCACTGAT 59.385 50.000 28.13 19.46 32.23 2.90
76 77 0.396435 TCAACTCGGTGGCACTGATT 59.604 50.000 28.13 20.57 32.23 2.57
77 78 0.518636 CAACTCGGTGGCACTGATTG 59.481 55.000 28.13 25.61 32.23 2.67
91 92 4.178540 CACTGATTGCATCAAAATCACCC 58.821 43.478 0.00 0.00 38.73 4.61
92 93 3.833650 ACTGATTGCATCAAAATCACCCA 59.166 39.130 0.00 0.00 38.73 4.51
93 94 4.081862 ACTGATTGCATCAAAATCACCCAG 60.082 41.667 0.00 0.00 38.73 4.45
94 95 3.196039 TGATTGCATCAAAATCACCCAGG 59.804 43.478 0.00 0.00 38.73 4.45
95 96 1.559368 TGCATCAAAATCACCCAGGG 58.441 50.000 2.85 2.85 0.00 4.45
96 97 1.076841 TGCATCAAAATCACCCAGGGA 59.923 47.619 14.54 0.00 0.00 4.20
97 98 1.753073 GCATCAAAATCACCCAGGGAG 59.247 52.381 14.54 3.89 0.00 4.30
98 99 1.753073 CATCAAAATCACCCAGGGAGC 59.247 52.381 14.54 0.00 0.00 4.70
99 100 0.776810 TCAAAATCACCCAGGGAGCA 59.223 50.000 14.54 0.00 0.00 4.26
100 101 0.890683 CAAAATCACCCAGGGAGCAC 59.109 55.000 14.54 0.00 0.00 4.40
101 102 0.779997 AAAATCACCCAGGGAGCACT 59.220 50.000 14.54 0.00 0.00 4.40
102 103 0.779997 AAATCACCCAGGGAGCACTT 59.220 50.000 14.54 0.00 0.00 3.16
103 104 0.038744 AATCACCCAGGGAGCACTTG 59.961 55.000 14.54 0.00 0.00 3.16
104 105 1.136329 ATCACCCAGGGAGCACTTGT 61.136 55.000 14.54 0.00 0.00 3.16
105 106 1.601759 CACCCAGGGAGCACTTGTG 60.602 63.158 14.54 0.00 0.00 3.33
106 107 2.674380 CCCAGGGAGCACTTGTGC 60.674 66.667 16.98 16.98 0.00 4.57
108 109 1.228367 CCAGGGAGCACTTGTGCTT 60.228 57.895 26.08 10.63 46.36 3.91
109 110 0.825010 CCAGGGAGCACTTGTGCTTT 60.825 55.000 26.08 14.02 46.36 3.51
110 111 0.595095 CAGGGAGCACTTGTGCTTTC 59.405 55.000 26.08 20.38 46.36 2.62
111 112 0.183492 AGGGAGCACTTGTGCTTTCA 59.817 50.000 26.08 0.00 46.36 2.69
112 113 0.312102 GGGAGCACTTGTGCTTTCAC 59.688 55.000 26.08 14.15 46.36 3.18
113 114 0.312102 GGAGCACTTGTGCTTTCACC 59.688 55.000 26.08 19.10 46.36 4.02
114 115 1.312815 GAGCACTTGTGCTTTCACCT 58.687 50.000 26.08 5.50 46.36 4.00
115 116 1.002033 GAGCACTTGTGCTTTCACCTG 60.002 52.381 26.08 0.00 46.36 4.00
116 117 0.740737 GCACTTGTGCTTTCACCTGT 59.259 50.000 17.36 0.00 42.46 4.00
117 118 1.268743 GCACTTGTGCTTTCACCTGTC 60.269 52.381 17.36 0.00 42.46 3.51
118 119 1.334869 CACTTGTGCTTTCACCTGTCC 59.665 52.381 0.00 0.00 42.46 4.02
119 120 1.212935 ACTTGTGCTTTCACCTGTCCT 59.787 47.619 0.00 0.00 42.46 3.85
120 121 2.301346 CTTGTGCTTTCACCTGTCCTT 58.699 47.619 0.00 0.00 42.46 3.36
121 122 1.967319 TGTGCTTTCACCTGTCCTTC 58.033 50.000 0.00 0.00 42.46 3.46
122 123 1.211703 TGTGCTTTCACCTGTCCTTCA 59.788 47.619 0.00 0.00 42.46 3.02
123 124 2.158623 TGTGCTTTCACCTGTCCTTCAT 60.159 45.455 0.00 0.00 42.46 2.57
124 125 2.227388 GTGCTTTCACCTGTCCTTCATG 59.773 50.000 0.00 0.00 37.24 3.07
125 126 1.200948 GCTTTCACCTGTCCTTCATGC 59.799 52.381 0.00 0.00 0.00 4.06
126 127 2.507484 CTTTCACCTGTCCTTCATGCA 58.493 47.619 0.00 0.00 0.00 3.96
127 128 1.896220 TTCACCTGTCCTTCATGCAC 58.104 50.000 0.00 0.00 0.00 4.57
128 129 0.320683 TCACCTGTCCTTCATGCACG 60.321 55.000 0.00 0.00 0.00 5.34
129 130 1.672356 ACCTGTCCTTCATGCACGC 60.672 57.895 0.00 0.00 0.00 5.34
130 131 2.401766 CCTGTCCTTCATGCACGCC 61.402 63.158 0.00 0.00 0.00 5.68
131 132 2.741985 TGTCCTTCATGCACGCCG 60.742 61.111 0.00 0.00 0.00 6.46
132 133 3.499737 GTCCTTCATGCACGCCGG 61.500 66.667 0.00 0.00 0.00 6.13
133 134 4.776322 TCCTTCATGCACGCCGGG 62.776 66.667 2.18 0.00 0.00 5.73
135 136 3.499737 CTTCATGCACGCCGGGTC 61.500 66.667 2.18 0.00 0.00 4.46
136 137 4.321966 TTCATGCACGCCGGGTCA 62.322 61.111 2.18 1.02 0.00 4.02
137 138 3.834013 TTCATGCACGCCGGGTCAA 62.834 57.895 2.18 0.00 0.00 3.18
138 139 3.361158 CATGCACGCCGGGTCAAA 61.361 61.111 2.18 0.00 0.00 2.69
139 140 2.596046 ATGCACGCCGGGTCAAAA 60.596 55.556 2.18 0.00 0.00 2.44
140 141 2.625823 ATGCACGCCGGGTCAAAAG 61.626 57.895 2.18 0.00 0.00 2.27
141 142 4.038080 GCACGCCGGGTCAAAAGG 62.038 66.667 2.18 0.00 0.00 3.11
142 143 3.361977 CACGCCGGGTCAAAAGGG 61.362 66.667 2.18 0.00 0.00 3.95
143 144 4.653888 ACGCCGGGTCAAAAGGGG 62.654 66.667 2.18 0.00 42.75 4.79
144 145 4.338710 CGCCGGGTCAAAAGGGGA 62.339 66.667 2.18 0.00 39.96 4.81
145 146 2.675423 GCCGGGTCAAAAGGGGAC 60.675 66.667 2.18 0.00 34.52 4.46
146 147 2.359478 CCGGGTCAAAAGGGGACG 60.359 66.667 0.00 0.00 36.12 4.79
147 148 2.359478 CGGGTCAAAAGGGGACGG 60.359 66.667 0.00 0.00 36.12 4.79
148 149 2.675423 GGGTCAAAAGGGGACGGC 60.675 66.667 0.00 0.00 36.12 5.68
149 150 2.434774 GGTCAAAAGGGGACGGCT 59.565 61.111 0.00 0.00 36.12 5.52
150 151 1.674651 GGTCAAAAGGGGACGGCTC 60.675 63.158 0.00 0.00 36.12 4.70
151 152 1.375326 GTCAAAAGGGGACGGCTCT 59.625 57.895 0.00 0.00 0.00 4.09
152 153 0.955919 GTCAAAAGGGGACGGCTCTG 60.956 60.000 0.00 0.00 0.00 3.35
153 154 2.034221 AAAAGGGGACGGCTCTGC 59.966 61.111 0.00 0.00 0.00 4.26
154 155 3.569200 AAAAGGGGACGGCTCTGCC 62.569 63.158 0.00 0.00 46.75 4.85
163 164 2.183046 GGCTCTGCCTCTCGACAC 59.817 66.667 0.73 0.00 46.69 3.67
164 165 2.640302 GGCTCTGCCTCTCGACACA 61.640 63.158 0.73 0.00 46.69 3.72
165 166 1.445238 GCTCTGCCTCTCGACACAC 60.445 63.158 0.00 0.00 0.00 3.82
166 167 1.959848 CTCTGCCTCTCGACACACA 59.040 57.895 0.00 0.00 0.00 3.72
167 168 0.387878 CTCTGCCTCTCGACACACAC 60.388 60.000 0.00 0.00 0.00 3.82
168 169 1.106944 TCTGCCTCTCGACACACACA 61.107 55.000 0.00 0.00 0.00 3.72
169 170 0.941463 CTGCCTCTCGACACACACAC 60.941 60.000 0.00 0.00 0.00 3.82
170 171 1.067416 GCCTCTCGACACACACACA 59.933 57.895 0.00 0.00 0.00 3.72
171 172 1.215655 GCCTCTCGACACACACACAC 61.216 60.000 0.00 0.00 0.00 3.82
172 173 0.934901 CCTCTCGACACACACACACG 60.935 60.000 0.00 0.00 0.00 4.49
173 174 1.540607 CTCTCGACACACACACACGC 61.541 60.000 0.00 0.00 0.00 5.34
174 175 2.916556 CTCGACACACACACACGCG 61.917 63.158 3.53 3.53 0.00 6.01
175 176 4.627114 CGACACACACACACGCGC 62.627 66.667 5.73 0.00 0.00 6.86
176 177 3.559344 GACACACACACACGCGCA 61.559 61.111 5.73 0.00 0.00 6.09
177 178 3.767066 GACACACACACACGCGCAC 62.767 63.158 5.73 0.00 0.00 5.34
178 179 3.858989 CACACACACACGCGCACA 61.859 61.111 5.73 0.00 0.00 4.57
179 180 3.860125 ACACACACACGCGCACAC 61.860 61.111 5.73 0.00 0.00 3.82
180 181 3.563088 CACACACACGCGCACACT 61.563 61.111 5.73 0.00 0.00 3.55
181 182 2.105328 ACACACACGCGCACACTA 59.895 55.556 5.73 0.00 0.00 2.74
182 183 1.949133 ACACACACGCGCACACTAG 60.949 57.895 5.73 0.00 0.00 2.57
183 184 3.036084 ACACACGCGCACACTAGC 61.036 61.111 5.73 0.00 0.00 3.42
184 185 2.734723 CACACGCGCACACTAGCT 60.735 61.111 5.73 0.00 0.00 3.32
185 186 2.430921 ACACGCGCACACTAGCTC 60.431 61.111 5.73 0.00 0.00 4.09
186 187 2.430751 CACGCGCACACTAGCTCA 60.431 61.111 5.73 0.00 0.00 4.26
187 188 2.021584 CACGCGCACACTAGCTCAA 61.022 57.895 5.73 0.00 0.00 3.02
188 189 1.300620 ACGCGCACACTAGCTCAAA 60.301 52.632 5.73 0.00 0.00 2.69
189 190 0.670546 ACGCGCACACTAGCTCAAAT 60.671 50.000 5.73 0.00 0.00 2.32
190 191 0.247419 CGCGCACACTAGCTCAAATG 60.247 55.000 8.75 0.00 0.00 2.32
191 192 0.798776 GCGCACACTAGCTCAAATGT 59.201 50.000 0.30 0.00 0.00 2.71
192 193 1.197721 GCGCACACTAGCTCAAATGTT 59.802 47.619 0.30 0.00 0.00 2.71
193 194 2.350772 GCGCACACTAGCTCAAATGTTT 60.351 45.455 0.30 0.00 0.00 2.83
194 195 3.482786 CGCACACTAGCTCAAATGTTTC 58.517 45.455 0.00 0.00 0.00 2.78
195 196 3.482786 GCACACTAGCTCAAATGTTTCG 58.517 45.455 0.00 0.00 0.00 3.46
196 197 3.058914 GCACACTAGCTCAAATGTTTCGT 60.059 43.478 0.00 0.00 0.00 3.85
197 198 4.702392 CACACTAGCTCAAATGTTTCGTC 58.298 43.478 0.00 0.00 0.00 4.20
198 199 4.449068 CACACTAGCTCAAATGTTTCGTCT 59.551 41.667 0.00 0.00 0.00 4.18
199 200 4.449068 ACACTAGCTCAAATGTTTCGTCTG 59.551 41.667 0.00 0.00 0.00 3.51
200 201 4.686091 CACTAGCTCAAATGTTTCGTCTGA 59.314 41.667 0.00 0.00 0.00 3.27
201 202 4.686554 ACTAGCTCAAATGTTTCGTCTGAC 59.313 41.667 0.00 0.00 0.00 3.51
202 203 3.733337 AGCTCAAATGTTTCGTCTGACT 58.267 40.909 6.21 0.00 0.00 3.41
203 204 3.743396 AGCTCAAATGTTTCGTCTGACTC 59.257 43.478 6.21 0.00 0.00 3.36
204 205 3.494626 GCTCAAATGTTTCGTCTGACTCA 59.505 43.478 6.21 0.97 0.00 3.41
205 206 4.153117 GCTCAAATGTTTCGTCTGACTCAT 59.847 41.667 6.21 3.15 0.00 2.90
206 207 5.348724 GCTCAAATGTTTCGTCTGACTCATA 59.651 40.000 6.21 0.00 0.00 2.15
207 208 6.036517 GCTCAAATGTTTCGTCTGACTCATAT 59.963 38.462 6.21 0.00 0.00 1.78
208 209 7.413438 GCTCAAATGTTTCGTCTGACTCATATT 60.413 37.037 6.21 0.00 0.00 1.28
209 210 7.963981 TCAAATGTTTCGTCTGACTCATATTC 58.036 34.615 6.21 0.00 0.00 1.75
210 211 7.602265 TCAAATGTTTCGTCTGACTCATATTCA 59.398 33.333 6.21 0.00 0.00 2.57
211 212 7.905604 AATGTTTCGTCTGACTCATATTCAA 57.094 32.000 6.21 0.00 0.00 2.69
212 213 8.498054 AATGTTTCGTCTGACTCATATTCAAT 57.502 30.769 6.21 0.00 0.00 2.57
213 214 7.294676 TGTTTCGTCTGACTCATATTCAATG 57.705 36.000 6.21 0.00 0.00 2.82
214 215 6.313658 TGTTTCGTCTGACTCATATTCAATGG 59.686 38.462 6.21 0.00 0.00 3.16
215 216 4.371786 TCGTCTGACTCATATTCAATGGC 58.628 43.478 6.21 0.00 0.00 4.40
216 217 4.122046 CGTCTGACTCATATTCAATGGCA 58.878 43.478 6.21 0.00 0.00 4.92
217 218 4.571984 CGTCTGACTCATATTCAATGGCAA 59.428 41.667 6.21 0.00 0.00 4.52
218 219 5.503031 CGTCTGACTCATATTCAATGGCAAC 60.503 44.000 6.21 0.00 0.00 4.17
232 233 2.571212 TGGCAACATTCGAGTTTGACT 58.429 42.857 9.27 0.00 46.17 3.41
233 234 2.548057 TGGCAACATTCGAGTTTGACTC 59.452 45.455 9.27 0.00 46.17 3.36
234 235 2.808543 GGCAACATTCGAGTTTGACTCT 59.191 45.455 6.53 0.00 42.92 3.24
235 236 3.120511 GGCAACATTCGAGTTTGACTCTC 60.121 47.826 6.53 0.00 42.92 3.20
236 237 3.743396 GCAACATTCGAGTTTGACTCTCT 59.257 43.478 6.53 0.00 42.92 3.10
237 238 4.143221 GCAACATTCGAGTTTGACTCTCTC 60.143 45.833 6.53 0.00 42.92 3.20
241 242 2.250348 CGAGTTTGACTCTCTCGGAC 57.750 55.000 6.53 0.00 42.92 4.79
242 243 1.464355 CGAGTTTGACTCTCTCGGACG 60.464 57.143 6.53 0.00 42.92 4.79
243 244 1.805345 GAGTTTGACTCTCTCGGACGA 59.195 52.381 0.00 0.00 41.88 4.20
244 245 1.536331 AGTTTGACTCTCTCGGACGAC 59.464 52.381 0.00 0.00 0.00 4.34
245 246 1.266175 GTTTGACTCTCTCGGACGACA 59.734 52.381 0.00 0.00 0.00 4.35
246 247 1.822506 TTGACTCTCTCGGACGACAT 58.177 50.000 0.00 0.00 0.00 3.06
247 248 1.822506 TGACTCTCTCGGACGACATT 58.177 50.000 0.00 0.00 0.00 2.71
248 249 2.981898 TGACTCTCTCGGACGACATTA 58.018 47.619 0.00 0.00 0.00 1.90
249 250 3.542648 TGACTCTCTCGGACGACATTAT 58.457 45.455 0.00 0.00 0.00 1.28
250 251 3.312697 TGACTCTCTCGGACGACATTATG 59.687 47.826 0.00 0.00 0.00 1.90
251 252 3.280295 ACTCTCTCGGACGACATTATGT 58.720 45.455 0.00 0.00 0.00 2.29
252 253 3.065510 ACTCTCTCGGACGACATTATGTG 59.934 47.826 1.24 0.00 0.00 3.21
253 254 2.120232 CTCTCGGACGACATTATGTGC 58.880 52.381 1.24 0.00 0.00 4.57
254 255 1.202371 TCTCGGACGACATTATGTGCC 60.202 52.381 1.24 0.58 0.00 5.01
255 256 0.533032 TCGGACGACATTATGTGCCA 59.467 50.000 1.24 0.00 0.00 4.92
256 257 0.650512 CGGACGACATTATGTGCCAC 59.349 55.000 1.24 0.00 0.00 5.01
257 258 0.650512 GGACGACATTATGTGCCACG 59.349 55.000 1.24 2.45 0.00 4.94
258 259 0.026285 GACGACATTATGTGCCACGC 59.974 55.000 1.24 0.00 0.00 5.34
259 260 0.391130 ACGACATTATGTGCCACGCT 60.391 50.000 1.24 0.00 0.00 5.07
260 261 0.026674 CGACATTATGTGCCACGCTG 59.973 55.000 1.24 0.00 0.00 5.18
261 262 1.086696 GACATTATGTGCCACGCTGT 58.913 50.000 1.24 0.00 0.00 4.40
262 263 1.468520 GACATTATGTGCCACGCTGTT 59.531 47.619 1.24 0.00 0.00 3.16
263 264 1.885887 ACATTATGTGCCACGCTGTTT 59.114 42.857 0.00 0.00 0.00 2.83
264 265 2.295909 ACATTATGTGCCACGCTGTTTT 59.704 40.909 0.00 0.00 0.00 2.43
265 266 3.243704 ACATTATGTGCCACGCTGTTTTT 60.244 39.130 0.00 0.00 0.00 1.94
266 267 2.414058 TATGTGCCACGCTGTTTTTG 57.586 45.000 0.00 0.00 0.00 2.44
267 268 0.875474 ATGTGCCACGCTGTTTTTGC 60.875 50.000 0.00 0.00 0.00 3.68
268 269 2.105930 TGCCACGCTGTTTTTGCC 59.894 55.556 0.00 0.00 0.00 4.52
269 270 2.105930 GCCACGCTGTTTTTGCCA 59.894 55.556 0.00 0.00 0.00 4.92
270 271 1.520342 GCCACGCTGTTTTTGCCAA 60.520 52.632 0.00 0.00 0.00 4.52
271 272 0.879839 GCCACGCTGTTTTTGCCAAT 60.880 50.000 0.00 0.00 0.00 3.16
272 273 1.604185 GCCACGCTGTTTTTGCCAATA 60.604 47.619 0.00 0.00 0.00 1.90
273 274 2.748605 CCACGCTGTTTTTGCCAATAA 58.251 42.857 0.00 0.00 0.00 1.40
274 275 3.126831 CCACGCTGTTTTTGCCAATAAA 58.873 40.909 0.00 0.00 0.00 1.40
275 276 3.059935 CCACGCTGTTTTTGCCAATAAAC 60.060 43.478 7.72 7.72 35.38 2.01
276 277 3.553511 CACGCTGTTTTTGCCAATAAACA 59.446 39.130 13.43 13.43 40.76 2.83
277 278 4.033358 CACGCTGTTTTTGCCAATAAACAA 59.967 37.500 14.39 0.00 41.96 2.83
278 279 4.631813 ACGCTGTTTTTGCCAATAAACAAA 59.368 33.333 14.39 0.00 41.96 2.83
279 280 5.295540 ACGCTGTTTTTGCCAATAAACAAAT 59.704 32.000 14.39 5.38 41.96 2.32
280 281 5.620417 CGCTGTTTTTGCCAATAAACAAATG 59.380 36.000 14.39 8.02 41.96 2.32
281 282 6.510799 CGCTGTTTTTGCCAATAAACAAATGA 60.511 34.615 14.39 0.00 41.96 2.57
282 283 6.632434 GCTGTTTTTGCCAATAAACAAATGAC 59.368 34.615 14.39 0.00 41.96 3.06
283 284 7.467131 GCTGTTTTTGCCAATAAACAAATGACT 60.467 33.333 14.39 0.00 41.96 3.41
284 285 7.692088 TGTTTTTGCCAATAAACAAATGACTG 58.308 30.769 12.38 0.00 40.26 3.51
285 286 7.550551 TGTTTTTGCCAATAAACAAATGACTGA 59.449 29.630 12.38 0.00 40.26 3.41
286 287 7.475771 TTTTGCCAATAAACAAATGACTGAC 57.524 32.000 0.00 0.00 35.81 3.51
287 288 5.781210 TGCCAATAAACAAATGACTGACA 57.219 34.783 0.00 0.00 0.00 3.58
288 289 5.527951 TGCCAATAAACAAATGACTGACAC 58.472 37.500 0.00 0.00 0.00 3.67
289 290 4.616802 GCCAATAAACAAATGACTGACACG 59.383 41.667 0.00 0.00 0.00 4.49
290 291 4.616802 CCAATAAACAAATGACTGACACGC 59.383 41.667 0.00 0.00 0.00 5.34
291 292 5.211454 CAATAAACAAATGACTGACACGCA 58.789 37.500 0.00 0.00 0.00 5.24
307 308 3.322466 CAGGCCTCGGGAACACCT 61.322 66.667 0.00 0.00 36.97 4.00
308 309 3.322466 AGGCCTCGGGAACACCTG 61.322 66.667 0.00 0.00 36.97 4.00
309 310 3.637273 GGCCTCGGGAACACCTGT 61.637 66.667 0.00 0.00 36.97 4.00
310 311 2.358737 GCCTCGGGAACACCTGTG 60.359 66.667 0.00 0.00 36.97 3.66
311 312 2.879233 GCCTCGGGAACACCTGTGA 61.879 63.158 3.94 0.00 36.97 3.58
312 313 1.983224 CCTCGGGAACACCTGTGAT 59.017 57.895 3.94 0.00 36.97 3.06
313 314 1.191535 CCTCGGGAACACCTGTGATA 58.808 55.000 3.94 0.00 36.97 2.15
314 315 1.137086 CCTCGGGAACACCTGTGATAG 59.863 57.143 3.94 0.00 36.97 2.08
315 316 1.825474 CTCGGGAACACCTGTGATAGT 59.175 52.381 3.94 0.00 36.97 2.12
316 317 1.548719 TCGGGAACACCTGTGATAGTG 59.451 52.381 3.94 0.00 39.93 2.74
317 318 1.739067 GGGAACACCTGTGATAGTGC 58.261 55.000 3.94 0.00 37.51 4.40
318 319 1.679032 GGGAACACCTGTGATAGTGCC 60.679 57.143 3.94 0.00 37.51 5.01
319 320 1.003118 GGAACACCTGTGATAGTGCCA 59.997 52.381 3.94 0.00 37.51 4.92
320 321 2.076863 GAACACCTGTGATAGTGCCAC 58.923 52.381 3.94 0.00 37.51 5.01
321 322 1.055849 ACACCTGTGATAGTGCCACA 58.944 50.000 3.94 0.00 41.68 4.17
322 323 1.630369 ACACCTGTGATAGTGCCACAT 59.370 47.619 3.94 0.00 42.79 3.21
323 324 2.837591 ACACCTGTGATAGTGCCACATA 59.162 45.455 3.94 0.00 42.79 2.29
324 325 3.118629 ACACCTGTGATAGTGCCACATAG 60.119 47.826 3.94 0.00 42.79 2.23
325 326 2.158900 ACCTGTGATAGTGCCACATAGC 60.159 50.000 0.00 0.00 42.79 2.97
326 327 2.158914 CCTGTGATAGTGCCACATAGCA 60.159 50.000 0.00 0.00 42.79 3.49
327 328 3.129109 CTGTGATAGTGCCACATAGCAG 58.871 50.000 0.00 0.00 45.14 4.24
328 329 2.765699 TGTGATAGTGCCACATAGCAGA 59.234 45.455 0.00 0.00 45.14 4.26
329 330 3.181472 TGTGATAGTGCCACATAGCAGAG 60.181 47.826 0.00 0.00 45.14 3.35
330 331 3.033909 TGATAGTGCCACATAGCAGAGT 58.966 45.455 0.00 0.00 45.14 3.24
331 332 2.967599 TAGTGCCACATAGCAGAGTG 57.032 50.000 0.00 0.00 45.14 3.51
332 333 0.979665 AGTGCCACATAGCAGAGTGT 59.020 50.000 0.00 0.00 45.14 3.55
333 334 1.081892 GTGCCACATAGCAGAGTGTG 58.918 55.000 0.00 0.00 45.14 3.82
334 335 0.686789 TGCCACATAGCAGAGTGTGT 59.313 50.000 4.99 0.00 43.14 3.72
335 336 1.338105 TGCCACATAGCAGAGTGTGTC 60.338 52.381 4.99 0.00 43.14 3.67
336 337 2.009042 GCCACATAGCAGAGTGTGTCC 61.009 57.143 4.99 0.00 43.14 4.02
337 338 1.406069 CCACATAGCAGAGTGTGTCCC 60.406 57.143 4.99 0.00 43.14 4.46
338 339 1.276138 CACATAGCAGAGTGTGTCCCA 59.724 52.381 0.00 0.00 40.54 4.37
339 340 1.276421 ACATAGCAGAGTGTGTCCCAC 59.724 52.381 0.00 0.00 44.89 4.61
352 353 6.422776 GTGTGTCCCACTAGTCAATATTTG 57.577 41.667 0.00 0.00 41.11 2.32
353 354 6.170506 GTGTGTCCCACTAGTCAATATTTGA 58.829 40.000 0.00 0.00 41.11 2.69
354 355 6.313905 GTGTGTCCCACTAGTCAATATTTGAG 59.686 42.308 0.00 0.00 39.63 3.02
355 356 5.294552 GTGTCCCACTAGTCAATATTTGAGC 59.705 44.000 0.00 0.00 41.01 4.26
356 357 5.189736 TGTCCCACTAGTCAATATTTGAGCT 59.810 40.000 0.00 0.00 41.01 4.09
357 358 6.382859 TGTCCCACTAGTCAATATTTGAGCTA 59.617 38.462 0.00 0.00 41.01 3.32
358 359 7.093068 TGTCCCACTAGTCAATATTTGAGCTAA 60.093 37.037 0.00 0.00 41.01 3.09
359 360 7.439655 GTCCCACTAGTCAATATTTGAGCTAAG 59.560 40.741 0.00 0.00 41.01 2.18
360 361 7.125811 TCCCACTAGTCAATATTTGAGCTAAGT 59.874 37.037 0.00 0.00 41.01 2.24
361 362 8.421784 CCCACTAGTCAATATTTGAGCTAAGTA 58.578 37.037 0.00 0.00 41.01 2.24
362 363 9.817809 CCACTAGTCAATATTTGAGCTAAGTAA 57.182 33.333 0.00 0.00 41.01 2.24
367 368 9.372369 AGTCAATATTTGAGCTAAGTAACAGTC 57.628 33.333 0.00 0.00 41.01 3.51
368 369 9.151471 GTCAATATTTGAGCTAAGTAACAGTCA 57.849 33.333 0.00 0.00 41.01 3.41
369 370 9.719355 TCAATATTTGAGCTAAGTAACAGTCAA 57.281 29.630 0.00 0.00 34.08 3.18
370 371 9.760660 CAATATTTGAGCTAAGTAACAGTCAAC 57.239 33.333 0.00 0.00 0.00 3.18
371 372 9.726438 AATATTTGAGCTAAGTAACAGTCAACT 57.274 29.630 0.00 0.00 0.00 3.16
390 391 6.854381 GTCAACTGTTTAATTTGACCTAACGG 59.146 38.462 2.87 0.00 42.15 4.44
415 416 3.070302 AGGCTTCGTTTTGGGCATTTTTA 59.930 39.130 0.00 0.00 0.00 1.52
424 425 2.683768 TGGGCATTTTTAAGTGTGGGT 58.316 42.857 0.00 0.00 0.00 4.51
448 449 1.066071 GTAGTGGAGGGGAAAGTGAGC 60.066 57.143 0.00 0.00 0.00 4.26
477 478 0.184933 TGGGTGGGACAAAACTGAGG 59.815 55.000 0.00 0.00 44.16 3.86
479 480 1.545651 GGGTGGGACAAAACTGAGGAG 60.546 57.143 0.00 0.00 44.16 3.69
489 490 6.425417 GGACAAAACTGAGGAGAACTAAGAAG 59.575 42.308 0.00 0.00 31.44 2.85
596 599 1.471119 AGTGGCTTGGAATGCTCATG 58.529 50.000 0.00 0.00 37.15 3.07
597 600 0.458669 GTGGCTTGGAATGCTCATGG 59.541 55.000 0.00 0.00 37.15 3.66
811 819 9.630098 AATTTCTTGATTACTGTTAATGTGCTG 57.370 29.630 0.00 0.00 0.00 4.41
986 1005 7.147976 CACTATAAAATAGGCTTGCCATTTCC 58.852 38.462 14.54 0.00 0.00 3.13
1159 1181 4.096081 GCATTTGTTCAGAATCTCTCCCAG 59.904 45.833 0.00 0.00 0.00 4.45
1179 1201 5.652014 CCCAGCAAATAATGGTCTTCTTGTA 59.348 40.000 0.00 0.00 37.77 2.41
1253 1275 6.628919 TCAATGGATGATAGCATGAAACTG 57.371 37.500 0.00 0.00 34.11 3.16
1254 1276 6.358991 TCAATGGATGATAGCATGAAACTGA 58.641 36.000 0.00 0.00 34.11 3.41
1255 1277 7.002276 TCAATGGATGATAGCATGAAACTGAT 58.998 34.615 0.00 0.00 34.11 2.90
1256 1278 7.174426 TCAATGGATGATAGCATGAAACTGATC 59.826 37.037 0.00 0.00 34.11 2.92
1257 1279 5.311265 TGGATGATAGCATGAAACTGATCC 58.689 41.667 0.00 0.06 34.11 3.36
1285 1307 3.387374 TGTGTGCACAAAATTCTCCCATT 59.613 39.130 23.59 0.00 38.56 3.16
1313 1335 3.828451 AGCCATGTGATAGCAAAACTTGT 59.172 39.130 0.00 0.00 0.00 3.16
1364 1386 5.156355 CAAACCAAATCTAGCATGTGTGTC 58.844 41.667 0.00 0.00 0.00 3.67
1673 1699 1.270625 TGAATGAGCGTCGTTCCCTTT 60.271 47.619 6.63 0.00 40.69 3.11
1833 1868 7.065803 GCTATTGTATGACTTTACTCTTTGCCA 59.934 37.037 0.00 0.00 0.00 4.92
1835 1870 5.865085 TGTATGACTTTACTCTTTGCCAGT 58.135 37.500 0.00 0.00 0.00 4.00
1837 1872 4.150897 TGACTTTACTCTTTGCCAGTGT 57.849 40.909 0.00 0.00 33.65 3.55
1862 1897 2.260154 TGTGTCTGCGCATTGGTGG 61.260 57.895 12.24 0.00 0.00 4.61
1905 1940 0.322277 CAGAGGCCAGATGTGTGCTT 60.322 55.000 5.01 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.696707 AGTTGTTCTAGTCGGTCCAACA 59.303 45.455 0.00 0.00 35.75 3.33
1 2 3.315418 GAGTTGTTCTAGTCGGTCCAAC 58.685 50.000 0.00 0.00 34.01 3.77
2 3 2.030540 CGAGTTGTTCTAGTCGGTCCAA 60.031 50.000 4.20 0.00 37.33 3.53
3 4 1.538512 CGAGTTGTTCTAGTCGGTCCA 59.461 52.381 4.20 0.00 37.33 4.02
4 5 1.538950 ACGAGTTGTTCTAGTCGGTCC 59.461 52.381 13.64 0.00 43.49 4.46
5 6 2.978489 CAACGAGTTGTTCTAGTCGGTC 59.022 50.000 13.64 0.00 43.49 4.79
6 7 3.009301 CAACGAGTTGTTCTAGTCGGT 57.991 47.619 13.64 6.38 43.49 4.69
15 16 6.586399 GCACATCGCTTACAACGAGTTGTT 62.586 45.833 24.03 10.56 43.72 2.83
16 17 5.180791 GCACATCGCTTACAACGAGTTGT 62.181 47.826 22.74 22.74 45.99 3.32
17 18 2.721797 GCACATCGCTTACAACGAGTTG 60.722 50.000 13.76 13.76 43.74 3.16
18 19 1.459592 GCACATCGCTTACAACGAGTT 59.540 47.619 0.00 0.00 43.74 3.01
19 20 1.068474 GCACATCGCTTACAACGAGT 58.932 50.000 0.00 0.00 43.74 4.18
20 21 3.858040 GCACATCGCTTACAACGAG 57.142 52.632 0.00 0.00 43.74 4.18
30 31 0.601311 CCTAAGCCCTAGCACATCGC 60.601 60.000 0.00 0.00 43.56 4.58
31 32 0.034059 CCCTAAGCCCTAGCACATCG 59.966 60.000 0.00 0.00 43.56 3.84
32 33 1.424638 TCCCTAAGCCCTAGCACATC 58.575 55.000 0.00 0.00 43.56 3.06
33 34 1.893315 TTCCCTAAGCCCTAGCACAT 58.107 50.000 0.00 0.00 43.56 3.21
34 35 1.663911 TTTCCCTAAGCCCTAGCACA 58.336 50.000 0.00 0.00 43.56 4.57
35 36 2.801077 TTTTCCCTAAGCCCTAGCAC 57.199 50.000 0.00 0.00 43.56 4.40
36 37 4.663120 TGATATTTTCCCTAAGCCCTAGCA 59.337 41.667 0.00 0.00 43.56 3.49
37 38 5.242795 TGATATTTTCCCTAAGCCCTAGC 57.757 43.478 0.00 0.00 40.32 3.42
38 39 6.842676 AGTTGATATTTTCCCTAAGCCCTAG 58.157 40.000 0.00 0.00 0.00 3.02
39 40 6.463897 CGAGTTGATATTTTCCCTAAGCCCTA 60.464 42.308 0.00 0.00 0.00 3.53
40 41 5.687706 CGAGTTGATATTTTCCCTAAGCCCT 60.688 44.000 0.00 0.00 0.00 5.19
41 42 4.515567 CGAGTTGATATTTTCCCTAAGCCC 59.484 45.833 0.00 0.00 0.00 5.19
42 43 4.515567 CCGAGTTGATATTTTCCCTAAGCC 59.484 45.833 0.00 0.00 0.00 4.35
43 44 5.007724 CACCGAGTTGATATTTTCCCTAAGC 59.992 44.000 0.00 0.00 0.00 3.09
44 45 5.527582 CCACCGAGTTGATATTTTCCCTAAG 59.472 44.000 0.00 0.00 0.00 2.18
45 46 5.433526 CCACCGAGTTGATATTTTCCCTAA 58.566 41.667 0.00 0.00 0.00 2.69
46 47 4.685030 GCCACCGAGTTGATATTTTCCCTA 60.685 45.833 0.00 0.00 0.00 3.53
47 48 3.886123 CCACCGAGTTGATATTTTCCCT 58.114 45.455 0.00 0.00 0.00 4.20
48 49 2.357952 GCCACCGAGTTGATATTTTCCC 59.642 50.000 0.00 0.00 0.00 3.97
49 50 3.013921 TGCCACCGAGTTGATATTTTCC 58.986 45.455 0.00 0.00 0.00 3.13
50 51 3.689649 AGTGCCACCGAGTTGATATTTTC 59.310 43.478 0.00 0.00 0.00 2.29
51 52 3.440173 CAGTGCCACCGAGTTGATATTTT 59.560 43.478 0.00 0.00 0.00 1.82
52 53 3.009723 CAGTGCCACCGAGTTGATATTT 58.990 45.455 0.00 0.00 0.00 1.40
53 54 2.236146 TCAGTGCCACCGAGTTGATATT 59.764 45.455 0.00 0.00 0.00 1.28
54 55 1.831106 TCAGTGCCACCGAGTTGATAT 59.169 47.619 0.00 0.00 0.00 1.63
55 56 1.262417 TCAGTGCCACCGAGTTGATA 58.738 50.000 0.00 0.00 0.00 2.15
56 57 0.615331 ATCAGTGCCACCGAGTTGAT 59.385 50.000 0.00 0.00 0.00 2.57
57 58 0.396435 AATCAGTGCCACCGAGTTGA 59.604 50.000 0.00 0.00 0.00 3.18
58 59 0.518636 CAATCAGTGCCACCGAGTTG 59.481 55.000 0.00 0.00 0.00 3.16
59 60 2.932663 CAATCAGTGCCACCGAGTT 58.067 52.632 0.00 0.00 0.00 3.01
60 61 4.701663 CAATCAGTGCCACCGAGT 57.298 55.556 0.00 0.00 0.00 4.18
73 74 3.431207 CCCTGGGTGATTTTGATGCAATC 60.431 47.826 3.97 0.00 45.83 2.67
74 75 2.502538 CCCTGGGTGATTTTGATGCAAT 59.497 45.455 3.97 0.00 0.00 3.56
75 76 1.901159 CCCTGGGTGATTTTGATGCAA 59.099 47.619 3.97 0.00 0.00 4.08
76 77 1.076841 TCCCTGGGTGATTTTGATGCA 59.923 47.619 13.56 0.00 0.00 3.96
77 78 1.753073 CTCCCTGGGTGATTTTGATGC 59.247 52.381 13.56 0.00 0.00 3.91
78 79 1.753073 GCTCCCTGGGTGATTTTGATG 59.247 52.381 18.68 0.00 0.00 3.07
79 80 1.358787 TGCTCCCTGGGTGATTTTGAT 59.641 47.619 18.68 0.00 0.00 2.57
80 81 0.776810 TGCTCCCTGGGTGATTTTGA 59.223 50.000 18.68 0.00 0.00 2.69
81 82 0.890683 GTGCTCCCTGGGTGATTTTG 59.109 55.000 18.68 0.65 0.00 2.44
82 83 0.779997 AGTGCTCCCTGGGTGATTTT 59.220 50.000 18.68 0.00 0.00 1.82
83 84 0.779997 AAGTGCTCCCTGGGTGATTT 59.220 50.000 18.68 6.10 0.00 2.17
84 85 0.038744 CAAGTGCTCCCTGGGTGATT 59.961 55.000 18.68 6.73 0.00 2.57
85 86 1.136329 ACAAGTGCTCCCTGGGTGAT 61.136 55.000 18.68 0.69 0.00 3.06
86 87 1.770110 ACAAGTGCTCCCTGGGTGA 60.770 57.895 18.68 0.00 0.00 4.02
87 88 1.601759 CACAAGTGCTCCCTGGGTG 60.602 63.158 13.56 11.90 0.00 4.61
88 89 2.839098 CACAAGTGCTCCCTGGGT 59.161 61.111 13.56 0.00 0.00 4.51
98 99 1.334869 GGACAGGTGAAAGCACAAGTG 59.665 52.381 0.00 0.00 46.96 3.16
99 100 1.212935 AGGACAGGTGAAAGCACAAGT 59.787 47.619 0.00 0.00 46.96 3.16
100 101 1.972872 AGGACAGGTGAAAGCACAAG 58.027 50.000 0.00 0.00 46.96 3.16
101 102 2.297701 GAAGGACAGGTGAAAGCACAA 58.702 47.619 0.00 0.00 46.96 3.33
102 103 1.211703 TGAAGGACAGGTGAAAGCACA 59.788 47.619 0.00 0.00 46.96 4.57
103 104 1.967319 TGAAGGACAGGTGAAAGCAC 58.033 50.000 0.00 0.00 44.39 4.40
104 105 2.507484 CATGAAGGACAGGTGAAAGCA 58.493 47.619 0.00 0.00 36.26 3.91
105 106 1.200948 GCATGAAGGACAGGTGAAAGC 59.799 52.381 0.00 0.00 32.48 3.51
106 107 2.227388 GTGCATGAAGGACAGGTGAAAG 59.773 50.000 0.00 0.00 38.62 2.62
107 108 2.229792 GTGCATGAAGGACAGGTGAAA 58.770 47.619 0.00 0.00 38.62 2.69
108 109 1.877680 CGTGCATGAAGGACAGGTGAA 60.878 52.381 0.00 0.00 38.70 3.18
109 110 0.320683 CGTGCATGAAGGACAGGTGA 60.321 55.000 0.00 0.00 38.70 4.02
110 111 1.915614 GCGTGCATGAAGGACAGGTG 61.916 60.000 10.93 0.00 38.70 4.00
111 112 1.672356 GCGTGCATGAAGGACAGGT 60.672 57.895 10.93 0.00 38.70 4.00
112 113 2.401766 GGCGTGCATGAAGGACAGG 61.402 63.158 10.93 0.00 38.70 4.00
113 114 2.743752 CGGCGTGCATGAAGGACAG 61.744 63.158 10.93 0.00 38.70 3.51
114 115 2.741985 CGGCGTGCATGAAGGACA 60.742 61.111 10.93 0.00 38.70 4.02
115 116 3.499737 CCGGCGTGCATGAAGGAC 61.500 66.667 10.93 0.00 34.85 3.85
116 117 4.776322 CCCGGCGTGCATGAAGGA 62.776 66.667 18.19 0.00 0.00 3.36
118 119 3.499737 GACCCGGCGTGCATGAAG 61.500 66.667 10.93 1.86 0.00 3.02
119 120 3.834013 TTGACCCGGCGTGCATGAA 62.834 57.895 10.93 0.00 0.00 2.57
120 121 3.834013 TTTGACCCGGCGTGCATGA 62.834 57.895 10.93 0.00 0.00 3.07
121 122 2.801113 CTTTTGACCCGGCGTGCATG 62.801 60.000 6.01 0.09 0.00 4.06
122 123 2.596046 TTTTGACCCGGCGTGCAT 60.596 55.556 6.01 0.00 0.00 3.96
123 124 3.283684 CTTTTGACCCGGCGTGCA 61.284 61.111 6.01 0.00 0.00 4.57
124 125 4.038080 CCTTTTGACCCGGCGTGC 62.038 66.667 6.01 0.00 0.00 5.34
125 126 3.361977 CCCTTTTGACCCGGCGTG 61.362 66.667 6.01 0.00 0.00 5.34
126 127 4.653888 CCCCTTTTGACCCGGCGT 62.654 66.667 6.01 0.00 0.00 5.68
127 128 4.338710 TCCCCTTTTGACCCGGCG 62.339 66.667 0.00 0.00 0.00 6.46
128 129 2.675423 GTCCCCTTTTGACCCGGC 60.675 66.667 0.00 0.00 0.00 6.13
129 130 2.359478 CGTCCCCTTTTGACCCGG 60.359 66.667 0.00 0.00 0.00 5.73
130 131 2.359478 CCGTCCCCTTTTGACCCG 60.359 66.667 0.00 0.00 0.00 5.28
131 132 2.675423 GCCGTCCCCTTTTGACCC 60.675 66.667 0.00 0.00 0.00 4.46
132 133 1.674651 GAGCCGTCCCCTTTTGACC 60.675 63.158 0.00 0.00 0.00 4.02
133 134 0.955919 CAGAGCCGTCCCCTTTTGAC 60.956 60.000 0.00 0.00 0.00 3.18
134 135 1.374947 CAGAGCCGTCCCCTTTTGA 59.625 57.895 0.00 0.00 0.00 2.69
135 136 2.335712 GCAGAGCCGTCCCCTTTTG 61.336 63.158 0.00 0.00 0.00 2.44
136 137 2.034221 GCAGAGCCGTCCCCTTTT 59.966 61.111 0.00 0.00 0.00 2.27
137 138 4.035102 GGCAGAGCCGTCCCCTTT 62.035 66.667 0.00 0.00 39.62 3.11
152 153 1.067416 TGTGTGTGTGTCGAGAGGC 59.933 57.895 0.00 0.00 0.00 4.70
153 154 0.934901 CGTGTGTGTGTGTCGAGAGG 60.935 60.000 0.00 0.00 0.00 3.69
154 155 1.540607 GCGTGTGTGTGTGTCGAGAG 61.541 60.000 0.00 0.00 0.00 3.20
155 156 1.587876 GCGTGTGTGTGTGTCGAGA 60.588 57.895 0.00 0.00 0.00 4.04
156 157 2.916556 CGCGTGTGTGTGTGTCGAG 61.917 63.158 0.00 0.00 0.00 4.04
157 158 2.952264 CGCGTGTGTGTGTGTCGA 60.952 61.111 0.00 0.00 0.00 4.20
158 159 4.627114 GCGCGTGTGTGTGTGTCG 62.627 66.667 8.43 0.00 0.00 4.35
159 160 3.559344 TGCGCGTGTGTGTGTGTC 61.559 61.111 8.43 0.00 0.00 3.67
160 161 3.860125 GTGCGCGTGTGTGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
161 162 3.858989 TGTGCGCGTGTGTGTGTG 61.859 61.111 8.43 0.00 0.00 3.82
162 163 2.892542 TAGTGTGCGCGTGTGTGTGT 62.893 55.000 8.43 0.00 0.00 3.72
163 164 2.146005 CTAGTGTGCGCGTGTGTGTG 62.146 60.000 8.43 0.00 0.00 3.82
164 165 1.949133 CTAGTGTGCGCGTGTGTGT 60.949 57.895 8.43 0.00 0.00 3.72
165 166 2.846224 CTAGTGTGCGCGTGTGTG 59.154 61.111 8.43 0.00 0.00 3.82
166 167 3.036084 GCTAGTGTGCGCGTGTGT 61.036 61.111 8.43 0.00 0.00 3.72
167 168 2.720758 GAGCTAGTGTGCGCGTGTG 61.721 63.158 8.43 0.00 38.13 3.82
168 169 2.430921 GAGCTAGTGTGCGCGTGT 60.431 61.111 8.43 0.00 38.13 4.49
169 170 1.556591 TTTGAGCTAGTGTGCGCGTG 61.557 55.000 8.43 0.00 38.13 5.34
170 171 0.670546 ATTTGAGCTAGTGTGCGCGT 60.671 50.000 8.43 0.00 38.13 6.01
171 172 0.247419 CATTTGAGCTAGTGTGCGCG 60.247 55.000 0.00 0.00 38.13 6.86
172 173 0.798776 ACATTTGAGCTAGTGTGCGC 59.201 50.000 0.00 0.00 38.13 6.09
173 174 3.482786 GAAACATTTGAGCTAGTGTGCG 58.517 45.455 0.00 0.00 38.13 5.34
174 175 3.058914 ACGAAACATTTGAGCTAGTGTGC 60.059 43.478 0.00 0.00 0.00 4.57
175 176 4.449068 AGACGAAACATTTGAGCTAGTGTG 59.551 41.667 0.00 0.00 0.00 3.82
176 177 4.449068 CAGACGAAACATTTGAGCTAGTGT 59.551 41.667 0.00 0.00 0.00 3.55
177 178 4.686091 TCAGACGAAACATTTGAGCTAGTG 59.314 41.667 0.00 0.00 0.00 2.74
178 179 4.686554 GTCAGACGAAACATTTGAGCTAGT 59.313 41.667 0.00 0.00 0.00 2.57
179 180 4.926238 AGTCAGACGAAACATTTGAGCTAG 59.074 41.667 0.00 0.00 0.00 3.42
180 181 4.883083 AGTCAGACGAAACATTTGAGCTA 58.117 39.130 0.00 0.00 0.00 3.32
181 182 3.733337 AGTCAGACGAAACATTTGAGCT 58.267 40.909 0.00 0.00 0.00 4.09
182 183 3.494626 TGAGTCAGACGAAACATTTGAGC 59.505 43.478 0.00 0.00 0.00 4.26
183 184 5.852738 ATGAGTCAGACGAAACATTTGAG 57.147 39.130 0.00 0.00 0.00 3.02
184 185 7.602265 TGAATATGAGTCAGACGAAACATTTGA 59.398 33.333 0.00 0.00 0.00 2.69
185 186 7.742151 TGAATATGAGTCAGACGAAACATTTG 58.258 34.615 0.00 0.00 0.00 2.32
186 187 7.905604 TGAATATGAGTCAGACGAAACATTT 57.094 32.000 0.00 2.52 0.00 2.32
187 188 7.905604 TTGAATATGAGTCAGACGAAACATT 57.094 32.000 0.00 2.15 0.00 2.71
188 189 7.011763 CCATTGAATATGAGTCAGACGAAACAT 59.988 37.037 0.00 3.40 0.00 2.71
189 190 6.313658 CCATTGAATATGAGTCAGACGAAACA 59.686 38.462 0.00 0.00 0.00 2.83
190 191 6.709643 CCATTGAATATGAGTCAGACGAAAC 58.290 40.000 0.00 0.00 0.00 2.78
191 192 5.294306 GCCATTGAATATGAGTCAGACGAAA 59.706 40.000 0.00 0.00 0.00 3.46
192 193 4.811024 GCCATTGAATATGAGTCAGACGAA 59.189 41.667 0.00 0.00 0.00 3.85
193 194 4.141959 TGCCATTGAATATGAGTCAGACGA 60.142 41.667 0.00 0.00 0.00 4.20
194 195 4.122046 TGCCATTGAATATGAGTCAGACG 58.878 43.478 0.00 0.00 0.00 4.18
195 196 5.355071 TGTTGCCATTGAATATGAGTCAGAC 59.645 40.000 0.00 0.00 0.00 3.51
196 197 5.499313 TGTTGCCATTGAATATGAGTCAGA 58.501 37.500 0.00 0.00 0.00 3.27
197 198 5.823209 TGTTGCCATTGAATATGAGTCAG 57.177 39.130 0.00 0.00 0.00 3.51
198 199 6.458615 CGAATGTTGCCATTGAATATGAGTCA 60.459 38.462 0.00 0.00 41.37 3.41
199 200 5.911280 CGAATGTTGCCATTGAATATGAGTC 59.089 40.000 0.00 0.00 41.37 3.36
200 201 5.589855 TCGAATGTTGCCATTGAATATGAGT 59.410 36.000 0.00 0.00 41.37 3.41
201 202 6.063640 TCGAATGTTGCCATTGAATATGAG 57.936 37.500 0.00 0.00 41.37 2.90
202 203 5.589855 ACTCGAATGTTGCCATTGAATATGA 59.410 36.000 0.00 0.00 41.37 2.15
203 204 5.824429 ACTCGAATGTTGCCATTGAATATG 58.176 37.500 0.00 0.00 41.37 1.78
204 205 6.455360 AACTCGAATGTTGCCATTGAATAT 57.545 33.333 0.00 0.00 41.37 1.28
205 206 5.895636 AACTCGAATGTTGCCATTGAATA 57.104 34.783 0.00 0.00 41.37 1.75
206 207 4.789012 AACTCGAATGTTGCCATTGAAT 57.211 36.364 0.00 0.00 41.37 2.57
207 208 4.037327 TCAAACTCGAATGTTGCCATTGAA 59.963 37.500 0.00 0.00 41.37 2.69
208 209 3.567585 TCAAACTCGAATGTTGCCATTGA 59.432 39.130 0.00 0.00 41.37 2.57
209 210 3.670055 GTCAAACTCGAATGTTGCCATTG 59.330 43.478 0.00 0.00 41.37 2.82
210 211 3.569701 AGTCAAACTCGAATGTTGCCATT 59.430 39.130 0.00 0.00 43.97 3.16
211 212 3.149196 AGTCAAACTCGAATGTTGCCAT 58.851 40.909 0.00 0.00 0.00 4.40
212 213 2.548057 GAGTCAAACTCGAATGTTGCCA 59.452 45.455 0.00 0.00 35.28 4.92
213 214 3.188895 GAGTCAAACTCGAATGTTGCC 57.811 47.619 0.00 0.00 35.28 4.52
223 224 1.805345 TCGTCCGAGAGAGTCAAACTC 59.195 52.381 0.00 0.00 45.38 3.01
224 225 1.536331 GTCGTCCGAGAGAGTCAAACT 59.464 52.381 0.00 0.00 0.00 2.66
225 226 1.266175 TGTCGTCCGAGAGAGTCAAAC 59.734 52.381 0.00 0.00 0.00 2.93
226 227 1.601166 TGTCGTCCGAGAGAGTCAAA 58.399 50.000 0.00 0.00 0.00 2.69
227 228 1.822506 ATGTCGTCCGAGAGAGTCAA 58.177 50.000 0.00 0.00 0.00 3.18
228 229 1.822506 AATGTCGTCCGAGAGAGTCA 58.177 50.000 0.00 0.00 0.00 3.41
229 230 3.312973 ACATAATGTCGTCCGAGAGAGTC 59.687 47.826 0.00 0.00 0.00 3.36
230 231 3.065510 CACATAATGTCGTCCGAGAGAGT 59.934 47.826 0.00 0.00 0.00 3.24
231 232 3.622828 CACATAATGTCGTCCGAGAGAG 58.377 50.000 0.00 0.00 0.00 3.20
232 233 2.223502 GCACATAATGTCGTCCGAGAGA 60.224 50.000 0.00 0.00 0.00 3.10
233 234 2.120232 GCACATAATGTCGTCCGAGAG 58.880 52.381 0.00 0.00 0.00 3.20
234 235 1.202371 GGCACATAATGTCGTCCGAGA 60.202 52.381 0.00 0.00 0.00 4.04
235 236 1.209128 GGCACATAATGTCGTCCGAG 58.791 55.000 0.00 0.00 0.00 4.63
236 237 0.533032 TGGCACATAATGTCGTCCGA 59.467 50.000 0.00 0.00 34.72 4.55
237 238 0.650512 GTGGCACATAATGTCGTCCG 59.349 55.000 13.86 0.00 44.52 4.79
238 239 0.650512 CGTGGCACATAATGTCGTCC 59.349 55.000 19.09 0.00 44.52 4.79
239 240 0.026285 GCGTGGCACATAATGTCGTC 59.974 55.000 19.09 0.00 44.52 4.20
240 241 0.391130 AGCGTGGCACATAATGTCGT 60.391 50.000 19.09 0.00 44.52 4.34
241 242 0.026674 CAGCGTGGCACATAATGTCG 59.973 55.000 19.09 1.65 44.52 4.35
242 243 1.086696 ACAGCGTGGCACATAATGTC 58.913 50.000 19.09 0.00 44.52 3.06
243 244 1.533625 AACAGCGTGGCACATAATGT 58.466 45.000 19.09 12.62 44.52 2.71
244 245 2.634982 AAACAGCGTGGCACATAATG 57.365 45.000 19.09 11.98 44.52 1.90
245 246 3.316283 CAAAAACAGCGTGGCACATAAT 58.684 40.909 19.09 0.00 44.52 1.28
246 247 2.736978 CAAAAACAGCGTGGCACATAA 58.263 42.857 19.09 0.00 44.52 1.90
247 248 1.601663 GCAAAAACAGCGTGGCACATA 60.602 47.619 19.09 0.00 44.52 2.29
248 249 0.875474 GCAAAAACAGCGTGGCACAT 60.875 50.000 19.09 2.02 44.52 3.21
249 250 1.518133 GCAAAAACAGCGTGGCACA 60.518 52.632 19.09 0.00 0.00 4.57
250 251 2.237066 GGCAAAAACAGCGTGGCAC 61.237 57.895 7.79 7.79 37.73 5.01
251 252 2.105930 GGCAAAAACAGCGTGGCA 59.894 55.556 0.00 0.00 37.73 4.92
252 253 0.879839 ATTGGCAAAAACAGCGTGGC 60.880 50.000 3.01 0.00 38.26 5.01
253 254 2.430546 TATTGGCAAAAACAGCGTGG 57.569 45.000 3.01 0.00 0.00 4.94
254 255 3.553511 TGTTTATTGGCAAAAACAGCGTG 59.446 39.130 23.94 0.00 39.88 5.34
255 256 3.786635 TGTTTATTGGCAAAAACAGCGT 58.213 36.364 23.94 4.38 39.88 5.07
256 257 4.785669 TTGTTTATTGGCAAAAACAGCG 57.214 36.364 25.13 0.00 44.05 5.18
257 258 6.632434 GTCATTTGTTTATTGGCAAAAACAGC 59.368 34.615 25.13 16.71 44.05 4.40
258 259 7.851963 CAGTCATTTGTTTATTGGCAAAAACAG 59.148 33.333 25.13 19.11 44.05 3.16
259 260 7.550551 TCAGTCATTTGTTTATTGGCAAAAACA 59.449 29.630 23.94 23.94 42.27 2.83
260 261 7.850492 GTCAGTCATTTGTTTATTGGCAAAAAC 59.150 33.333 20.93 20.93 37.98 2.43
261 262 7.550551 TGTCAGTCATTTGTTTATTGGCAAAAA 59.449 29.630 3.01 0.00 37.98 1.94
262 263 7.010923 GTGTCAGTCATTTGTTTATTGGCAAAA 59.989 33.333 3.01 0.00 37.98 2.44
263 264 6.478344 GTGTCAGTCATTTGTTTATTGGCAAA 59.522 34.615 3.01 0.00 38.68 3.68
264 265 5.982516 GTGTCAGTCATTTGTTTATTGGCAA 59.017 36.000 0.68 0.68 0.00 4.52
265 266 5.527951 GTGTCAGTCATTTGTTTATTGGCA 58.472 37.500 0.00 0.00 0.00 4.92
266 267 4.616802 CGTGTCAGTCATTTGTTTATTGGC 59.383 41.667 0.00 0.00 0.00 4.52
267 268 4.616802 GCGTGTCAGTCATTTGTTTATTGG 59.383 41.667 0.00 0.00 0.00 3.16
268 269 5.211454 TGCGTGTCAGTCATTTGTTTATTG 58.789 37.500 0.00 0.00 0.00 1.90
269 270 5.431420 TGCGTGTCAGTCATTTGTTTATT 57.569 34.783 0.00 0.00 0.00 1.40
270 271 4.083324 CCTGCGTGTCAGTCATTTGTTTAT 60.083 41.667 0.00 0.00 41.25 1.40
271 272 3.249799 CCTGCGTGTCAGTCATTTGTTTA 59.750 43.478 0.00 0.00 41.25 2.01
272 273 2.033299 CCTGCGTGTCAGTCATTTGTTT 59.967 45.455 0.00 0.00 41.25 2.83
273 274 1.603802 CCTGCGTGTCAGTCATTTGTT 59.396 47.619 0.00 0.00 41.25 2.83
274 275 1.229428 CCTGCGTGTCAGTCATTTGT 58.771 50.000 0.00 0.00 41.25 2.83
275 276 0.110056 GCCTGCGTGTCAGTCATTTG 60.110 55.000 0.00 0.00 41.25 2.32
276 277 1.237285 GGCCTGCGTGTCAGTCATTT 61.237 55.000 0.00 0.00 41.25 2.32
277 278 1.672356 GGCCTGCGTGTCAGTCATT 60.672 57.895 0.00 0.00 41.25 2.57
278 279 2.046892 GGCCTGCGTGTCAGTCAT 60.047 61.111 0.00 0.00 41.25 3.06
279 280 3.226429 GAGGCCTGCGTGTCAGTCA 62.226 63.158 12.00 0.00 41.25 3.41
280 281 2.433318 GAGGCCTGCGTGTCAGTC 60.433 66.667 12.00 0.00 41.25 3.51
281 282 4.363990 CGAGGCCTGCGTGTCAGT 62.364 66.667 12.00 0.00 41.25 3.41
290 291 3.322466 AGGTGTTCCCGAGGCCTG 61.322 66.667 12.00 1.85 38.74 4.85
291 292 3.322466 CAGGTGTTCCCGAGGCCT 61.322 66.667 3.86 3.86 38.74 5.19
292 293 3.637273 ACAGGTGTTCCCGAGGCC 61.637 66.667 0.00 0.00 38.74 5.19
293 294 2.185310 ATCACAGGTGTTCCCGAGGC 62.185 60.000 0.00 0.00 38.74 4.70
294 295 1.137086 CTATCACAGGTGTTCCCGAGG 59.863 57.143 0.00 0.00 38.74 4.63
295 296 1.825474 ACTATCACAGGTGTTCCCGAG 59.175 52.381 0.00 0.00 38.74 4.63
296 297 1.548719 CACTATCACAGGTGTTCCCGA 59.451 52.381 0.00 0.00 38.74 5.14
297 298 2.007049 GCACTATCACAGGTGTTCCCG 61.007 57.143 0.00 0.00 38.74 5.14
298 299 1.679032 GGCACTATCACAGGTGTTCCC 60.679 57.143 0.00 0.00 36.03 3.97
299 300 1.003118 TGGCACTATCACAGGTGTTCC 59.997 52.381 0.00 0.00 36.03 3.62
300 301 2.076863 GTGGCACTATCACAGGTGTTC 58.923 52.381 11.13 0.00 36.03 3.18
301 302 1.419762 TGTGGCACTATCACAGGTGTT 59.580 47.619 19.83 0.00 39.83 3.32
302 303 1.055849 TGTGGCACTATCACAGGTGT 58.944 50.000 19.83 0.00 39.83 4.16
303 304 2.408271 ATGTGGCACTATCACAGGTG 57.592 50.000 19.83 0.00 46.49 4.00
304 305 2.158900 GCTATGTGGCACTATCACAGGT 60.159 50.000 19.83 0.00 46.49 4.00
305 306 2.158914 TGCTATGTGGCACTATCACAGG 60.159 50.000 19.83 1.97 46.49 4.00
306 307 3.129109 CTGCTATGTGGCACTATCACAG 58.871 50.000 19.83 14.90 46.49 3.66
308 309 3.181471 ACTCTGCTATGTGGCACTATCAC 60.181 47.826 19.83 5.32 37.29 3.06
309 310 3.033909 ACTCTGCTATGTGGCACTATCA 58.966 45.455 19.83 10.18 37.29 2.15
310 311 3.181471 ACACTCTGCTATGTGGCACTATC 60.181 47.826 19.83 6.04 38.39 2.08
311 312 2.768527 ACACTCTGCTATGTGGCACTAT 59.231 45.455 19.83 12.71 38.39 2.12
312 313 2.094026 CACACTCTGCTATGTGGCACTA 60.094 50.000 19.83 5.69 42.08 2.74
313 314 0.979665 ACACTCTGCTATGTGGCACT 59.020 50.000 19.83 6.99 38.39 4.40
314 315 1.081892 CACACTCTGCTATGTGGCAC 58.918 55.000 11.55 11.55 42.08 5.01
315 316 3.538379 CACACTCTGCTATGTGGCA 57.462 52.632 8.03 0.00 42.08 4.92
319 320 1.644509 TGGGACACACTCTGCTATGT 58.355 50.000 0.00 0.00 0.00 2.29
332 333 5.189736 AGCTCAAATATTGACTAGTGGGACA 59.810 40.000 0.00 0.00 35.46 4.02
333 334 5.675538 AGCTCAAATATTGACTAGTGGGAC 58.324 41.667 0.00 0.00 35.46 4.46
334 335 5.957771 AGCTCAAATATTGACTAGTGGGA 57.042 39.130 0.00 0.00 35.46 4.37
335 336 7.275920 ACTTAGCTCAAATATTGACTAGTGGG 58.724 38.462 0.00 0.00 35.46 4.61
336 337 9.817809 TTACTTAGCTCAAATATTGACTAGTGG 57.182 33.333 0.00 0.00 35.46 4.00
341 342 9.372369 GACTGTTACTTAGCTCAAATATTGACT 57.628 33.333 0.00 0.00 35.46 3.41
342 343 9.151471 TGACTGTTACTTAGCTCAAATATTGAC 57.849 33.333 0.00 0.00 35.46 3.18
343 344 9.719355 TTGACTGTTACTTAGCTCAAATATTGA 57.281 29.630 0.00 0.00 38.17 2.57
344 345 9.760660 GTTGACTGTTACTTAGCTCAAATATTG 57.239 33.333 0.00 0.00 0.00 1.90
345 346 9.726438 AGTTGACTGTTACTTAGCTCAAATATT 57.274 29.630 0.00 0.00 0.00 1.28
346 347 9.155975 CAGTTGACTGTTACTTAGCTCAAATAT 57.844 33.333 2.98 0.00 39.09 1.28
347 348 8.534333 CAGTTGACTGTTACTTAGCTCAAATA 57.466 34.615 2.98 0.00 39.09 1.40
348 349 7.426929 CAGTTGACTGTTACTTAGCTCAAAT 57.573 36.000 2.98 0.00 39.09 2.32
349 350 6.844696 CAGTTGACTGTTACTTAGCTCAAA 57.155 37.500 2.98 0.00 39.09 2.69
366 367 6.513720 GCCGTTAGGTCAAATTAAACAGTTGA 60.514 38.462 0.00 0.00 40.50 3.18
367 368 5.627780 GCCGTTAGGTCAAATTAAACAGTTG 59.372 40.000 0.00 0.00 40.50 3.16
368 369 5.299782 TGCCGTTAGGTCAAATTAAACAGTT 59.700 36.000 0.00 0.00 40.50 3.16
369 370 4.822896 TGCCGTTAGGTCAAATTAAACAGT 59.177 37.500 0.00 0.00 40.50 3.55
370 371 5.365403 TGCCGTTAGGTCAAATTAAACAG 57.635 39.130 0.00 0.00 40.50 3.16
371 372 5.278561 CCTTGCCGTTAGGTCAAATTAAACA 60.279 40.000 0.00 0.00 40.50 2.83
372 373 5.158494 CCTTGCCGTTAGGTCAAATTAAAC 58.842 41.667 0.00 0.00 40.50 2.01
373 374 4.321378 GCCTTGCCGTTAGGTCAAATTAAA 60.321 41.667 0.00 0.00 40.50 1.52
386 387 0.248866 CAAAACGAAGCCTTGCCGTT 60.249 50.000 0.00 0.00 46.70 4.44
390 391 1.664649 GCCCAAAACGAAGCCTTGC 60.665 57.895 0.00 0.00 0.00 4.01
415 416 2.368875 CTCCACTACTCAACCCACACTT 59.631 50.000 0.00 0.00 0.00 3.16
424 425 2.637872 CACTTTCCCCTCCACTACTCAA 59.362 50.000 0.00 0.00 0.00 3.02
448 449 1.002659 TGTCCCACCCAACTAACATCG 59.997 52.381 0.00 0.00 0.00 3.84
477 478 1.407575 GCCCCTGGCTTCTTAGTTCTC 60.408 57.143 0.00 0.00 46.69 2.87
479 480 3.176728 GCCCCTGGCTTCTTAGTTC 57.823 57.895 0.00 0.00 46.69 3.01
757 765 7.389330 TGTTTATTTGATTCGGTGACATGTACT 59.611 33.333 0.00 0.00 0.00 2.73
811 819 8.613060 TCTATTTATTTGATCTGGTGAGATGC 57.387 34.615 0.00 0.00 39.19 3.91
1159 1181 6.027749 CGGTTACAAGAAGACCATTATTTGC 58.972 40.000 0.00 0.00 32.95 3.68
1179 1201 5.566469 TCATGATTAAGAAAAGGGACGGTT 58.434 37.500 0.00 0.00 0.00 4.44
1271 1293 4.692155 GGCTTTGTCAATGGGAGAATTTTG 59.308 41.667 1.08 0.00 0.00 2.44
1285 1307 3.070476 TGCTATCACATGGCTTTGTCA 57.930 42.857 0.00 0.00 37.67 3.58
1313 1335 6.379386 TGTACGTTTCACACATTGTTTTTCA 58.621 32.000 0.00 0.00 0.00 2.69
1364 1386 4.722700 CACCGGCACCCCTCAAGG 62.723 72.222 0.00 0.00 0.00 3.61
1383 1405 1.893137 AGCCGGATCTATGCATAACGA 59.107 47.619 5.05 2.96 0.00 3.85
1502 1524 7.710907 TCATATGGCTTATGAGTGTACAAACTC 59.289 37.037 16.57 1.38 41.41 3.01
1637 1663 2.291209 TTCACCATCCACATGCAAGT 57.709 45.000 0.00 0.00 0.00 3.16
1673 1699 4.637276 TCTTCAACATCAACGCCTTTAGA 58.363 39.130 0.00 0.00 0.00 2.10
1755 1781 4.095632 TCGAAGCAATGAAAACAACAGTCA 59.904 37.500 0.00 0.00 0.00 3.41
1808 1843 8.492673 TGGCAAAGAGTAAAGTCATACAATAG 57.507 34.615 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.