Multiple sequence alignment - TraesCS6B01G416900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G416900 chr6B 100.000 4084 0 0 1 4084 689034468 689030385 0.000000e+00 7542
1 TraesCS6B01G416900 chr6B 89.888 1701 140 17 2075 3751 688470512 688472204 0.000000e+00 2159
2 TraesCS6B01G416900 chr6B 90.869 679 43 11 1277 1953 688469816 688470477 0.000000e+00 893
3 TraesCS6B01G416900 chr6B 87.905 587 41 15 704 1283 688469208 688469771 0.000000e+00 664
4 TraesCS6B01G416900 chr6B 92.176 409 11 5 207 595 688465968 688466375 3.570000e-155 558
5 TraesCS6B01G416900 chr6B 92.857 98 0 2 609 705 688468010 688468101 7.120000e-28 135
6 TraesCS6B01G416900 chr6A 92.885 2052 118 16 1277 3313 599831780 599829742 0.000000e+00 2955
7 TraesCS6B01G416900 chr6A 84.970 672 47 23 629 1283 599832459 599831825 2.070000e-177 632
8 TraesCS6B01G416900 chr6A 91.351 185 13 3 207 391 599835961 599835780 2.440000e-62 250
9 TraesCS6B01G416900 chr6D 93.002 1229 69 9 2078 3292 453651453 453650228 0.000000e+00 1777
10 TraesCS6B01G416900 chr6D 89.720 642 35 15 663 1283 453652895 453652264 0.000000e+00 791
11 TraesCS6B01G416900 chr6D 94.955 337 17 0 1627 1963 453651916 453651580 2.800000e-146 529
12 TraesCS6B01G416900 chr6D 93.891 311 15 1 1277 1587 453652219 453651913 2.220000e-127 466
13 TraesCS6B01G416900 chr3D 77.298 903 189 11 2106 2995 307881620 307882519 6.050000e-143 518
14 TraesCS6B01G416900 chr3D 76.915 901 174 27 2111 2990 610805033 610804146 7.940000e-132 481
15 TraesCS6B01G416900 chr3D 85.294 238 33 2 1298 1534 307880292 307880528 1.130000e-60 244
16 TraesCS6B01G416900 chr3D 79.600 250 51 0 1285 1534 307795930 307795681 3.240000e-41 180
17 TraesCS6B01G416900 chr1A 76.914 888 190 11 2106 2986 534051259 534050380 1.320000e-134 490
18 TraesCS6B01G416900 chr2A 77.751 827 160 16 2110 2917 174245677 174246498 1.710000e-133 486
19 TraesCS6B01G416900 chr2A 76.580 918 189 19 2105 3003 174027288 174028198 7.940000e-132 481
20 TraesCS6B01G416900 chr2D 76.509 911 195 15 2105 3000 174324526 174325432 2.860000e-131 479
21 TraesCS6B01G416900 chr1D 76.629 890 192 12 2105 2986 437000498 436999617 1.030000e-130 477
22 TraesCS6B01G416900 chr2B 98.104 211 4 0 1 211 737133600 737133390 6.450000e-98 368
23 TraesCS6B01G416900 chr2B 96.759 216 5 1 1 216 497040353 497040140 3.880000e-95 359
24 TraesCS6B01G416900 chr3A 98.544 206 3 0 1 206 568444050 568444255 8.340000e-97 364
25 TraesCS6B01G416900 chr3A 84.034 238 34 4 1299 1534 427191823 427192058 4.110000e-55 226
26 TraesCS6B01G416900 chrUn 97.209 215 5 1 1 215 253745090 253745303 3.000000e-96 363
27 TraesCS6B01G416900 chrUn 97.209 215 5 1 1 215 442673521 442673308 3.000000e-96 363
28 TraesCS6B01G416900 chr5A 97.196 214 6 0 1 214 17673482 17673695 3.000000e-96 363
29 TraesCS6B01G416900 chr4A 97.619 210 5 0 1 210 731776876 731776667 1.080000e-95 361
30 TraesCS6B01G416900 chr4A 95.890 219 8 1 1 218 616121249 616121031 1.810000e-93 353
31 TraesCS6B01G416900 chr4A 79.681 251 49 2 1285 1534 115302190 115302439 3.240000e-41 180
32 TraesCS6B01G416900 chr4D 97.170 212 6 0 1 212 460958534 460958323 3.880000e-95 359
33 TraesCS6B01G416900 chr4D 80.876 251 46 2 1285 1534 349564015 349563766 3.220000e-46 196
34 TraesCS6B01G416900 chr3B 84.519 239 33 4 1298 1534 413865717 413865481 2.450000e-57 233
35 TraesCS6B01G416900 chr5D 87.156 109 14 0 1760 1868 506158752 506158860 1.540000e-24 124
36 TraesCS6B01G416900 chr5B 84.259 108 17 0 1761 1868 636895917 636896024 5.580000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G416900 chr6B 689030385 689034468 4083 True 7542.00 7542 100.000000 1 4084 1 chr6B.!!$R1 4083
1 TraesCS6B01G416900 chr6B 688465968 688472204 6236 False 881.80 2159 90.739000 207 3751 5 chr6B.!!$F1 3544
2 TraesCS6B01G416900 chr6A 599829742 599835961 6219 True 1279.00 2955 89.735333 207 3313 3 chr6A.!!$R1 3106
3 TraesCS6B01G416900 chr6D 453650228 453652895 2667 True 890.75 1777 92.892000 663 3292 4 chr6D.!!$R1 2629
4 TraesCS6B01G416900 chr3D 610804146 610805033 887 True 481.00 481 76.915000 2111 2990 1 chr3D.!!$R2 879
5 TraesCS6B01G416900 chr3D 307880292 307882519 2227 False 381.00 518 81.296000 1298 2995 2 chr3D.!!$F1 1697
6 TraesCS6B01G416900 chr1A 534050380 534051259 879 True 490.00 490 76.914000 2106 2986 1 chr1A.!!$R1 880
7 TraesCS6B01G416900 chr2A 174245677 174246498 821 False 486.00 486 77.751000 2110 2917 1 chr2A.!!$F2 807
8 TraesCS6B01G416900 chr2A 174027288 174028198 910 False 481.00 481 76.580000 2105 3003 1 chr2A.!!$F1 898
9 TraesCS6B01G416900 chr2D 174324526 174325432 906 False 479.00 479 76.509000 2105 3000 1 chr2D.!!$F1 895
10 TraesCS6B01G416900 chr1D 436999617 437000498 881 True 477.00 477 76.629000 2105 2986 1 chr1D.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.037160 ATTAAAACGCGTCCCCACCT 59.963 50.0 14.44 0.0 0.00 4.00 F
78 79 0.037605 CCCCACCTTGTCACGAGTAC 60.038 60.0 0.00 0.0 0.00 2.73 F
891 5572 0.179004 AGCAACGGACCAATGGTTGA 60.179 50.0 6.30 0.0 42.70 3.18 F
914 5611 0.546122 ACTGTCCACAAGAAGGTGCA 59.454 50.0 0.00 0.0 37.46 4.57 F
1739 6553 0.900421 TGTGAGCAGATGGACTCAGG 59.100 55.0 0.00 0.0 43.30 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 6777 0.657840 GGAACATGCATGCCTACGTC 59.342 55.000 26.53 13.20 0.00 4.34 R
1969 7062 1.273048 TGTTTCAGGAACATGCATGCC 59.727 47.619 26.53 19.59 43.13 4.40 R
2677 8208 0.179089 GCAGCTCGATGATCACACCT 60.179 55.000 0.00 0.00 0.00 4.00 R
2704 8235 0.837272 CGGGGTCATGGTGGATAAGT 59.163 55.000 0.00 0.00 0.00 2.24 R
3649 9191 0.036765 TTCTCCGTTGTAGGCGCAAT 60.037 50.000 10.83 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.402233 GCGGCGCGTGCAAATTTT 61.402 55.556 24.18 0.00 45.35 1.82
25 26 2.762616 CGGCGCGTGCAAATTTTC 59.237 55.556 24.18 1.87 45.35 2.29
26 27 2.715849 CGGCGCGTGCAAATTTTCC 61.716 57.895 24.18 1.06 45.35 3.13
27 28 1.372872 GGCGCGTGCAAATTTTCCT 60.373 52.632 24.18 0.00 45.35 3.36
28 29 0.109504 GGCGCGTGCAAATTTTCCTA 60.110 50.000 24.18 0.00 45.35 2.94
29 30 1.259316 GCGCGTGCAAATTTTCCTAG 58.741 50.000 17.66 0.00 42.15 3.02
30 31 1.895051 CGCGTGCAAATTTTCCTAGG 58.105 50.000 0.82 0.82 0.00 3.02
31 32 1.466950 CGCGTGCAAATTTTCCTAGGA 59.533 47.619 7.62 7.62 0.00 2.94
32 33 2.727916 CGCGTGCAAATTTTCCTAGGAC 60.728 50.000 12.22 0.00 0.00 3.85
33 34 2.488153 GCGTGCAAATTTTCCTAGGACT 59.512 45.455 12.22 0.00 0.00 3.85
34 35 3.687698 GCGTGCAAATTTTCCTAGGACTA 59.312 43.478 12.22 2.29 0.00 2.59
35 36 4.155280 GCGTGCAAATTTTCCTAGGACTAA 59.845 41.667 12.22 9.49 0.00 2.24
36 37 5.335348 GCGTGCAAATTTTCCTAGGACTAAA 60.335 40.000 12.22 11.12 0.00 1.85
37 38 6.084277 CGTGCAAATTTTCCTAGGACTAAAC 58.916 40.000 12.22 3.19 0.00 2.01
38 39 6.072673 CGTGCAAATTTTCCTAGGACTAAACT 60.073 38.462 12.22 0.00 0.00 2.66
39 40 7.084486 GTGCAAATTTTCCTAGGACTAAACTG 58.916 38.462 12.22 12.04 0.00 3.16
40 41 6.093404 GCAAATTTTCCTAGGACTAAACTGC 58.907 40.000 12.22 17.21 0.00 4.40
41 42 6.621613 CAAATTTTCCTAGGACTAAACTGCC 58.378 40.000 12.22 0.00 0.00 4.85
42 43 3.994931 TTTCCTAGGACTAAACTGCCC 57.005 47.619 12.22 0.00 0.00 5.36
43 44 1.875488 TCCTAGGACTAAACTGCCCC 58.125 55.000 7.62 0.00 0.00 5.80
44 45 1.365028 TCCTAGGACTAAACTGCCCCT 59.635 52.381 7.62 0.00 0.00 4.79
45 46 2.588720 TCCTAGGACTAAACTGCCCCTA 59.411 50.000 7.62 0.00 0.00 3.53
46 47 2.966516 CCTAGGACTAAACTGCCCCTAG 59.033 54.545 1.05 0.00 43.67 3.02
47 48 2.942604 AGGACTAAACTGCCCCTAGA 57.057 50.000 0.00 0.00 0.00 2.43
48 49 3.423058 AGGACTAAACTGCCCCTAGAT 57.577 47.619 0.00 0.00 0.00 1.98
49 50 3.737263 AGGACTAAACTGCCCCTAGATT 58.263 45.455 0.00 0.00 0.00 2.40
50 51 4.892198 AGGACTAAACTGCCCCTAGATTA 58.108 43.478 0.00 0.00 0.00 1.75
51 52 5.286221 AGGACTAAACTGCCCCTAGATTAA 58.714 41.667 0.00 0.00 0.00 1.40
52 53 5.729718 AGGACTAAACTGCCCCTAGATTAAA 59.270 40.000 0.00 0.00 0.00 1.52
53 54 6.216868 AGGACTAAACTGCCCCTAGATTAAAA 59.783 38.462 0.00 0.00 0.00 1.52
54 55 6.318144 GGACTAAACTGCCCCTAGATTAAAAC 59.682 42.308 0.00 0.00 0.00 2.43
55 56 5.878669 ACTAAACTGCCCCTAGATTAAAACG 59.121 40.000 0.00 0.00 0.00 3.60
56 57 2.640184 ACTGCCCCTAGATTAAAACGC 58.360 47.619 0.00 0.00 0.00 4.84
57 58 1.597663 CTGCCCCTAGATTAAAACGCG 59.402 52.381 3.53 3.53 0.00 6.01
58 59 1.065998 TGCCCCTAGATTAAAACGCGT 60.066 47.619 5.58 5.58 0.00 6.01
59 60 1.596260 GCCCCTAGATTAAAACGCGTC 59.404 52.381 14.44 0.00 0.00 5.19
60 61 2.207590 CCCCTAGATTAAAACGCGTCC 58.792 52.381 14.44 0.00 0.00 4.79
61 62 2.207590 CCCTAGATTAAAACGCGTCCC 58.792 52.381 14.44 0.00 0.00 4.46
62 63 2.207590 CCTAGATTAAAACGCGTCCCC 58.792 52.381 14.44 0.00 0.00 4.81
63 64 2.419021 CCTAGATTAAAACGCGTCCCCA 60.419 50.000 14.44 0.00 0.00 4.96
64 65 1.445871 AGATTAAAACGCGTCCCCAC 58.554 50.000 14.44 3.05 0.00 4.61
65 66 0.448990 GATTAAAACGCGTCCCCACC 59.551 55.000 14.44 0.00 0.00 4.61
66 67 0.037160 ATTAAAACGCGTCCCCACCT 59.963 50.000 14.44 0.00 0.00 4.00
67 68 0.179023 TTAAAACGCGTCCCCACCTT 60.179 50.000 14.44 0.00 0.00 3.50
68 69 0.885596 TAAAACGCGTCCCCACCTTG 60.886 55.000 14.44 0.00 0.00 3.61
69 70 2.897172 AAAACGCGTCCCCACCTTGT 62.897 55.000 14.44 0.00 0.00 3.16
70 71 3.819877 AACGCGTCCCCACCTTGTC 62.820 63.158 14.44 0.00 0.00 3.18
71 72 4.308458 CGCGTCCCCACCTTGTCA 62.308 66.667 0.00 0.00 0.00 3.58
72 73 2.668550 GCGTCCCCACCTTGTCAC 60.669 66.667 0.00 0.00 0.00 3.67
73 74 2.357034 CGTCCCCACCTTGTCACG 60.357 66.667 0.00 0.00 0.00 4.35
74 75 2.863346 CGTCCCCACCTTGTCACGA 61.863 63.158 0.00 0.00 0.00 4.35
75 76 1.004918 GTCCCCACCTTGTCACGAG 60.005 63.158 0.00 0.00 0.00 4.18
76 77 1.458777 TCCCCACCTTGTCACGAGT 60.459 57.895 0.00 0.00 0.00 4.18
77 78 0.178955 TCCCCACCTTGTCACGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
78 79 0.037605 CCCCACCTTGTCACGAGTAC 60.038 60.000 0.00 0.00 0.00 2.73
79 80 0.966920 CCCACCTTGTCACGAGTACT 59.033 55.000 0.00 0.00 0.00 2.73
80 81 1.336887 CCCACCTTGTCACGAGTACTG 60.337 57.143 0.00 0.00 0.00 2.74
81 82 1.336887 CCACCTTGTCACGAGTACTGG 60.337 57.143 0.00 0.25 0.00 4.00
82 83 0.317479 ACCTTGTCACGAGTACTGGC 59.683 55.000 0.00 0.00 0.00 4.85
83 84 0.389948 CCTTGTCACGAGTACTGGCC 60.390 60.000 0.00 0.00 0.00 5.36
84 85 0.389948 CTTGTCACGAGTACTGGCCC 60.390 60.000 0.00 0.00 0.00 5.80
85 86 1.823169 TTGTCACGAGTACTGGCCCC 61.823 60.000 0.00 0.00 0.00 5.80
86 87 2.118732 TCACGAGTACTGGCCCCA 59.881 61.111 0.00 0.00 0.00 4.96
87 88 2.264794 CACGAGTACTGGCCCCAC 59.735 66.667 0.00 0.00 0.00 4.61
88 89 2.119832 ACGAGTACTGGCCCCACT 59.880 61.111 0.00 0.00 0.00 4.00
89 90 1.982938 ACGAGTACTGGCCCCACTC 60.983 63.158 15.21 15.21 36.23 3.51
90 91 1.982395 CGAGTACTGGCCCCACTCA 60.982 63.158 21.61 0.00 38.89 3.41
91 92 1.330655 CGAGTACTGGCCCCACTCAT 61.331 60.000 21.61 0.00 38.89 2.90
92 93 0.912486 GAGTACTGGCCCCACTCATT 59.088 55.000 18.66 0.00 38.82 2.57
93 94 1.282157 GAGTACTGGCCCCACTCATTT 59.718 52.381 18.66 0.00 38.82 2.32
94 95 1.710809 AGTACTGGCCCCACTCATTTT 59.289 47.619 0.00 0.00 0.00 1.82
95 96 2.916934 AGTACTGGCCCCACTCATTTTA 59.083 45.455 0.00 0.00 0.00 1.52
96 97 2.514458 ACTGGCCCCACTCATTTTAG 57.486 50.000 0.00 0.00 0.00 1.85
97 98 1.710809 ACTGGCCCCACTCATTTTAGT 59.289 47.619 0.00 0.00 0.00 2.24
98 99 2.916934 ACTGGCCCCACTCATTTTAGTA 59.083 45.455 0.00 0.00 0.00 1.82
99 100 3.279434 CTGGCCCCACTCATTTTAGTAC 58.721 50.000 0.00 0.00 0.00 2.73
100 101 2.916934 TGGCCCCACTCATTTTAGTACT 59.083 45.455 0.00 0.00 0.00 2.73
101 102 3.332485 TGGCCCCACTCATTTTAGTACTT 59.668 43.478 0.00 0.00 0.00 2.24
102 103 4.202631 TGGCCCCACTCATTTTAGTACTTT 60.203 41.667 0.00 0.00 0.00 2.66
103 104 4.398358 GGCCCCACTCATTTTAGTACTTTC 59.602 45.833 0.00 0.00 0.00 2.62
104 105 4.094442 GCCCCACTCATTTTAGTACTTTCG 59.906 45.833 0.00 0.00 0.00 3.46
105 106 4.094442 CCCCACTCATTTTAGTACTTTCGC 59.906 45.833 0.00 0.00 0.00 4.70
106 107 4.201685 CCCACTCATTTTAGTACTTTCGCG 60.202 45.833 0.00 0.00 0.00 5.87
107 108 4.387862 CCACTCATTTTAGTACTTTCGCGT 59.612 41.667 5.77 0.00 0.00 6.01
108 109 5.574055 CCACTCATTTTAGTACTTTCGCGTA 59.426 40.000 5.77 0.00 0.00 4.42
109 110 6.453396 CCACTCATTTTAGTACTTTCGCGTAC 60.453 42.308 5.77 0.46 39.97 3.67
111 112 6.865205 ACTCATTTTAGTACTTTCGCGTACTT 59.135 34.615 11.71 0.00 45.76 2.24
112 113 7.383300 ACTCATTTTAGTACTTTCGCGTACTTT 59.617 33.333 11.71 0.00 45.76 2.66
113 114 7.723270 TCATTTTAGTACTTTCGCGTACTTTC 58.277 34.615 11.71 0.00 45.76 2.62
114 115 7.381948 TCATTTTAGTACTTTCGCGTACTTTCA 59.618 33.333 11.71 0.00 45.76 2.69
115 116 7.642071 TTTTAGTACTTTCGCGTACTTTCAT 57.358 32.000 11.71 0.00 45.76 2.57
116 117 6.859715 TTAGTACTTTCGCGTACTTTCATC 57.140 37.500 11.71 0.00 45.76 2.92
117 118 3.850273 AGTACTTTCGCGTACTTTCATCG 59.150 43.478 5.77 0.00 45.76 3.84
118 119 1.990563 ACTTTCGCGTACTTTCATCGG 59.009 47.619 5.77 0.00 0.00 4.18
119 120 2.256174 CTTTCGCGTACTTTCATCGGA 58.744 47.619 5.77 0.00 0.00 4.55
120 121 1.904144 TTCGCGTACTTTCATCGGAG 58.096 50.000 5.77 0.00 0.00 4.63
121 122 0.806868 TCGCGTACTTTCATCGGAGT 59.193 50.000 5.77 0.00 0.00 3.85
122 123 2.009051 TCGCGTACTTTCATCGGAGTA 58.991 47.619 5.77 0.00 0.00 2.59
123 124 2.107178 CGCGTACTTTCATCGGAGTAC 58.893 52.381 0.00 4.10 42.92 2.73
124 125 2.223203 CGCGTACTTTCATCGGAGTACT 60.223 50.000 0.00 0.00 43.73 2.73
125 126 3.001634 CGCGTACTTTCATCGGAGTACTA 59.998 47.826 0.00 0.00 43.73 1.82
126 127 4.278058 GCGTACTTTCATCGGAGTACTAC 58.722 47.826 0.00 0.00 43.73 2.73
127 128 4.787882 GCGTACTTTCATCGGAGTACTACC 60.788 50.000 0.00 0.45 43.73 3.18
128 129 4.260948 CGTACTTTCATCGGAGTACTACCC 60.261 50.000 0.00 0.00 43.73 3.69
129 130 3.705051 ACTTTCATCGGAGTACTACCCA 58.295 45.455 0.00 0.00 0.00 4.51
130 131 3.700038 ACTTTCATCGGAGTACTACCCAG 59.300 47.826 0.00 0.00 0.00 4.45
131 132 3.377253 TTCATCGGAGTACTACCCAGT 57.623 47.619 0.00 0.00 38.91 4.00
132 133 4.508551 TTCATCGGAGTACTACCCAGTA 57.491 45.455 0.00 0.00 36.14 2.74
146 147 7.735326 ACTACCCAGTACTTCATATTTGTCT 57.265 36.000 0.00 0.00 31.45 3.41
147 148 7.556844 ACTACCCAGTACTTCATATTTGTCTG 58.443 38.462 0.00 0.00 31.45 3.51
148 149 5.186198 ACCCAGTACTTCATATTTGTCTGC 58.814 41.667 0.00 0.00 0.00 4.26
149 150 4.576463 CCCAGTACTTCATATTTGTCTGCC 59.424 45.833 0.00 0.00 0.00 4.85
150 151 4.271049 CCAGTACTTCATATTTGTCTGCCG 59.729 45.833 0.00 0.00 0.00 5.69
151 152 4.870426 CAGTACTTCATATTTGTCTGCCGT 59.130 41.667 0.00 0.00 0.00 5.68
152 153 5.351465 CAGTACTTCATATTTGTCTGCCGTT 59.649 40.000 0.00 0.00 0.00 4.44
153 154 6.533723 CAGTACTTCATATTTGTCTGCCGTTA 59.466 38.462 0.00 0.00 0.00 3.18
154 155 7.064134 CAGTACTTCATATTTGTCTGCCGTTAA 59.936 37.037 0.00 0.00 0.00 2.01
155 156 6.811253 ACTTCATATTTGTCTGCCGTTAAA 57.189 33.333 0.00 0.00 0.00 1.52
156 157 7.391148 ACTTCATATTTGTCTGCCGTTAAAT 57.609 32.000 0.00 0.00 0.00 1.40
157 158 7.472543 ACTTCATATTTGTCTGCCGTTAAATC 58.527 34.615 0.00 0.00 0.00 2.17
158 159 6.043327 TCATATTTGTCTGCCGTTAAATCG 57.957 37.500 0.00 0.00 0.00 3.34
159 160 5.813157 TCATATTTGTCTGCCGTTAAATCGA 59.187 36.000 0.00 0.00 0.00 3.59
160 161 3.799137 TTTGTCTGCCGTTAAATCGAC 57.201 42.857 0.00 0.00 0.00 4.20
161 162 2.442212 TGTCTGCCGTTAAATCGACA 57.558 45.000 0.00 0.00 0.00 4.35
162 163 2.967362 TGTCTGCCGTTAAATCGACAT 58.033 42.857 0.00 0.00 0.00 3.06
163 164 2.927477 TGTCTGCCGTTAAATCGACATC 59.073 45.455 0.00 0.00 0.00 3.06
164 165 2.927477 GTCTGCCGTTAAATCGACATCA 59.073 45.455 0.00 0.00 0.00 3.07
165 166 3.369756 GTCTGCCGTTAAATCGACATCAA 59.630 43.478 0.00 0.00 0.00 2.57
166 167 3.369756 TCTGCCGTTAAATCGACATCAAC 59.630 43.478 0.00 0.00 0.00 3.18
167 168 2.092995 TGCCGTTAAATCGACATCAACG 59.907 45.455 13.42 13.42 41.10 4.10
168 169 2.346244 GCCGTTAAATCGACATCAACGA 59.654 45.455 19.06 0.00 43.37 3.85
169 170 3.181528 GCCGTTAAATCGACATCAACGAA 60.182 43.478 19.06 0.00 43.37 3.85
170 171 4.320491 CCGTTAAATCGACATCAACGAAC 58.680 43.478 19.06 3.09 43.37 3.95
171 172 4.004455 CGTTAAATCGACATCAACGAACG 58.996 43.478 14.62 7.02 43.37 3.95
172 173 4.320491 GTTAAATCGACATCAACGAACGG 58.680 43.478 0.00 0.00 42.80 4.44
173 174 2.074547 AATCGACATCAACGAACGGT 57.925 45.000 0.00 0.00 42.80 4.83
174 175 2.074547 ATCGACATCAACGAACGGTT 57.925 45.000 0.00 0.00 42.80 4.44
175 176 1.411394 TCGACATCAACGAACGGTTC 58.589 50.000 10.83 10.83 36.49 3.62
176 177 1.001048 TCGACATCAACGAACGGTTCT 60.001 47.619 17.94 3.54 36.49 3.01
177 178 2.226200 TCGACATCAACGAACGGTTCTA 59.774 45.455 17.94 2.54 36.49 2.10
178 179 2.981805 CGACATCAACGAACGGTTCTAA 59.018 45.455 17.94 2.24 36.49 2.10
179 180 3.426191 CGACATCAACGAACGGTTCTAAA 59.574 43.478 17.94 2.56 36.49 1.85
180 181 4.084952 CGACATCAACGAACGGTTCTAAAA 60.085 41.667 17.94 2.89 36.49 1.52
181 182 5.556758 CGACATCAACGAACGGTTCTAAAAA 60.557 40.000 17.94 1.59 36.49 1.94
200 201 4.665833 AAAAGCCCAACCACTCTAAAAC 57.334 40.909 0.00 0.00 0.00 2.43
201 202 3.595190 AAGCCCAACCACTCTAAAACT 57.405 42.857 0.00 0.00 0.00 2.66
202 203 3.595190 AGCCCAACCACTCTAAAACTT 57.405 42.857 0.00 0.00 0.00 2.66
203 204 3.222603 AGCCCAACCACTCTAAAACTTG 58.777 45.455 0.00 0.00 0.00 3.16
204 205 2.956333 GCCCAACCACTCTAAAACTTGT 59.044 45.455 0.00 0.00 0.00 3.16
205 206 4.139038 GCCCAACCACTCTAAAACTTGTA 58.861 43.478 0.00 0.00 0.00 2.41
262 263 4.775780 AGGGAGGGTGTTAAATTAAAAGGC 59.224 41.667 0.00 0.00 0.00 4.35
330 331 2.795329 CCTTGTCTAGCACCACCAATT 58.205 47.619 0.00 0.00 0.00 2.32
446 467 9.504710 GTGTGTGTGTGTGTATAAACAAAATAA 57.495 29.630 0.00 0.00 37.36 1.40
490 511 3.427233 CCGACTATACCGCCTATAGCAAC 60.427 52.174 0.00 0.00 44.04 4.17
555 576 9.334947 CATGATCCATTCTAGTTAGTTCACATT 57.665 33.333 0.00 0.00 0.00 2.71
627 4192 7.065563 TCACCCATTTCAAAATGTTCAAGTTTG 59.934 33.333 12.99 6.19 43.57 2.93
628 4193 6.318396 ACCCATTTCAAAATGTTCAAGTTTGG 59.682 34.615 12.99 7.17 42.68 3.28
629 4194 6.200808 CCATTTCAAAATGTTCAAGTTTGGC 58.799 36.000 12.99 0.00 42.68 4.52
630 4195 6.038492 CCATTTCAAAATGTTCAAGTTTGGCT 59.962 34.615 12.99 0.00 42.68 4.75
631 4196 6.660887 TTTCAAAATGTTCAAGTTTGGCTC 57.339 33.333 10.32 0.00 42.68 4.70
632 4197 5.336150 TCAAAATGTTCAAGTTTGGCTCA 57.664 34.783 10.32 0.00 42.68 4.26
705 4271 3.325870 TCAGCACTACGTCCAAAATCTG 58.674 45.455 0.00 0.00 0.00 2.90
746 5420 1.210478 CTACATCCAACCTCCCCACAG 59.790 57.143 0.00 0.00 0.00 3.66
833 5508 2.134091 GCGTCACCGTCCATAATCTGG 61.134 57.143 0.00 0.00 39.55 3.86
888 5569 1.303317 GGAGCAACGGACCAATGGT 60.303 57.895 3.74 3.74 39.44 3.55
889 5570 0.893727 GGAGCAACGGACCAATGGTT 60.894 55.000 6.30 0.00 35.25 3.67
891 5572 0.179004 AGCAACGGACCAATGGTTGA 60.179 50.000 6.30 0.00 42.70 3.18
893 5590 0.596082 CAACGGACCAATGGTTGACC 59.404 55.000 6.30 2.01 42.70 4.02
903 5600 3.487576 TGGTTGACCAACTGTCCAC 57.512 52.632 12.02 0.00 44.35 4.02
907 5604 2.639065 GTTGACCAACTGTCCACAAGA 58.361 47.619 5.69 0.00 43.78 3.02
909 5606 2.917933 TGACCAACTGTCCACAAGAAG 58.082 47.619 0.00 0.00 43.78 2.85
912 5609 1.949525 CCAACTGTCCACAAGAAGGTG 59.050 52.381 0.00 0.00 38.52 4.00
914 5611 0.546122 ACTGTCCACAAGAAGGTGCA 59.454 50.000 0.00 0.00 37.46 4.57
932 5629 5.416952 AGGTGCAAGAATCCTTAGACAAATG 59.583 40.000 0.00 0.00 0.00 2.32
954 5651 1.205417 GCACCATTGGAATTCTGTGGG 59.795 52.381 20.52 13.75 34.27 4.61
1024 5721 7.394641 TCAAGTACACAGTTCACTCTCATCTAT 59.605 37.037 0.00 0.00 0.00 1.98
1028 5725 5.359576 ACACAGTTCACTCTCATCTATCCTC 59.640 44.000 0.00 0.00 0.00 3.71
1029 5726 4.578516 ACAGTTCACTCTCATCTATCCTCG 59.421 45.833 0.00 0.00 0.00 4.63
1030 5727 4.819088 CAGTTCACTCTCATCTATCCTCGA 59.181 45.833 0.00 0.00 0.00 4.04
1031 5728 5.473162 CAGTTCACTCTCATCTATCCTCGAT 59.527 44.000 0.00 0.00 0.00 3.59
1032 5729 5.705441 AGTTCACTCTCATCTATCCTCGATC 59.295 44.000 0.00 0.00 0.00 3.69
1047 5744 4.471386 TCCTCGATCTCTTCCTCCATTTTT 59.529 41.667 0.00 0.00 0.00 1.94
1048 5745 4.574013 CCTCGATCTCTTCCTCCATTTTTG 59.426 45.833 0.00 0.00 0.00 2.44
1061 5764 3.253188 TCCATTTTTGGCTCGAGAAACAG 59.747 43.478 18.75 4.40 0.00 3.16
1113 5816 2.267642 GCCACGGTGCTATGGACA 59.732 61.111 1.68 0.00 38.34 4.02
1509 6314 1.627297 GGAGGATTCTCAACCCCGCT 61.627 60.000 2.72 0.00 41.69 5.52
1587 6392 8.812329 GCATTTCTTTATCAGACTACTGTACTG 58.188 37.037 0.00 0.00 43.81 2.74
1602 6407 6.150396 ACTGTACTGGCAAGCTAGTATTAG 57.850 41.667 19.00 19.86 40.99 1.73
1607 6412 5.429130 ACTGGCAAGCTAGTATTAGTTTCC 58.571 41.667 9.43 0.00 35.98 3.13
1608 6413 5.045869 ACTGGCAAGCTAGTATTAGTTTCCA 60.046 40.000 9.43 10.22 35.98 3.53
1739 6553 0.900421 TGTGAGCAGATGGACTCAGG 59.100 55.000 0.00 0.00 43.30 3.86
1798 6612 0.969894 CGGAGTTTCAGACCCTCACT 59.030 55.000 0.00 0.00 0.00 3.41
1872 6686 2.341257 GATTTTCGAGCTGCAGTCTGA 58.659 47.619 16.64 7.68 0.00 3.27
1958 6772 5.427481 CCTCCCTAACACTTAATCACCCTTA 59.573 44.000 0.00 0.00 0.00 2.69
1963 6777 9.284968 CCCTAACACTTAATCACCCTTATAATG 57.715 37.037 0.00 0.00 0.00 1.90
1969 7062 9.193133 CACTTAATCACCCTTATAATGACGTAG 57.807 37.037 0.00 0.00 0.00 3.51
1988 7081 1.547372 AGGCATGCATGTTCCTGAAAC 59.453 47.619 26.79 7.51 38.43 2.78
2050 7516 9.132521 GCAGTGAATCCATATATTGTAAAATGC 57.867 33.333 0.00 0.00 0.00 3.56
2051 7517 9.333497 CAGTGAATCCATATATTGTAAAATGCG 57.667 33.333 0.00 0.00 0.00 4.73
2052 7518 8.023128 AGTGAATCCATATATTGTAAAATGCGC 58.977 33.333 0.00 0.00 0.00 6.09
2066 7532 1.934589 ATGCGCGTACTCATTTAGCA 58.065 45.000 8.43 0.00 37.54 3.49
2070 7536 1.852895 CGCGTACTCATTTAGCAGACC 59.147 52.381 0.00 0.00 0.00 3.85
2071 7537 2.479730 CGCGTACTCATTTAGCAGACCT 60.480 50.000 0.00 0.00 0.00 3.85
2677 8208 2.252072 GAAGCATCACCTACCCCGCA 62.252 60.000 0.00 0.00 0.00 5.69
2704 8235 3.147595 ATCGAGCTGCCCGTGCTA 61.148 61.111 2.92 0.00 41.30 3.49
2722 8253 2.224548 GCTACTTATCCACCATGACCCC 60.225 54.545 0.00 0.00 0.00 4.95
2779 8310 3.512724 CAGAAAGGTTTGCTGATGGGATT 59.487 43.478 0.00 0.00 0.00 3.01
2782 8313 0.179129 GGTTTGCTGATGGGATTGCG 60.179 55.000 0.00 0.00 0.00 4.85
2990 8521 2.819608 GGTGCACAAATTAAGCTCAGGA 59.180 45.455 20.43 0.00 0.00 3.86
3014 8545 9.828039 GGACAATATGATGATGAGCATTATAGA 57.172 33.333 1.82 0.00 38.41 1.98
3079 8611 5.049405 GCGCCATGTAATAAGCTTTCATACT 60.049 40.000 3.20 0.00 0.00 2.12
3118 8650 4.445452 AAGTCCAATCATGTTGCACATC 57.555 40.909 0.00 0.00 36.53 3.06
3130 8662 4.062293 TGTTGCACATCTGTAACACTACC 58.938 43.478 0.66 0.00 45.01 3.18
3132 8664 4.344359 TGCACATCTGTAACACTACCAA 57.656 40.909 0.00 0.00 0.00 3.67
3136 8668 6.264292 TGCACATCTGTAACACTACCAAAAAT 59.736 34.615 0.00 0.00 0.00 1.82
3188 8720 7.537596 TTCATGTTGTAATGTGGAAAGGAAT 57.462 32.000 0.00 0.00 0.00 3.01
3193 8725 8.514330 TGTTGTAATGTGGAAAGGAATATACC 57.486 34.615 0.00 0.00 0.00 2.73
3194 8726 7.558444 TGTTGTAATGTGGAAAGGAATATACCC 59.442 37.037 0.00 0.00 0.00 3.69
3201 8733 5.962031 GTGGAAAGGAATATACCCCCTTTTT 59.038 40.000 13.11 0.00 46.78 1.94
3224 8760 2.225467 GCTATCCTTCCTTCATGTGCC 58.775 52.381 0.00 0.00 0.00 5.01
3226 8762 3.071602 GCTATCCTTCCTTCATGTGCCTA 59.928 47.826 0.00 0.00 0.00 3.93
3258 8794 8.853077 TGTCACTTCATGAATATTGACTCTTT 57.147 30.769 27.95 0.00 39.72 2.52
3304 8841 4.082125 GGGTCCATTTGTTCTCATGAAGT 58.918 43.478 0.00 0.00 32.15 3.01
3316 8853 6.183361 TGTTCTCATGAAGTTTCCCTAAGTCA 60.183 38.462 0.00 0.00 32.15 3.41
3344 8884 2.550277 ATCCATTGGAGGGGAAAACC 57.450 50.000 11.78 0.00 36.62 3.27
3356 8896 4.492646 AGGGGAAAACCAACAAGATCAAT 58.507 39.130 0.00 0.00 42.91 2.57
3358 8898 5.480422 AGGGGAAAACCAACAAGATCAATAC 59.520 40.000 0.00 0.00 42.91 1.89
3371 8911 6.596888 ACAAGATCAATACACATTCAGGAGTG 59.403 38.462 0.00 0.00 41.40 3.51
3380 8920 2.624838 ACATTCAGGAGTGTGCAAAAGG 59.375 45.455 0.00 0.00 29.74 3.11
3401 8941 3.344515 GTGTGGGAAGGAGGAACATTAC 58.655 50.000 0.00 0.00 0.00 1.89
3420 8960 2.944129 ACTTCCACCTTTGCTTTGCTA 58.056 42.857 0.00 0.00 0.00 3.49
3436 8976 6.379133 TGCTTTGCTAATGATCTTCCTTGAAT 59.621 34.615 0.00 0.00 0.00 2.57
3444 8984 4.978099 TGATCTTCCTTGAATAGATGGCC 58.022 43.478 0.00 0.00 0.00 5.36
3445 8985 4.662179 TGATCTTCCTTGAATAGATGGCCT 59.338 41.667 3.32 0.00 0.00 5.19
3447 8987 3.137176 TCTTCCTTGAATAGATGGCCTGG 59.863 47.826 3.32 0.00 0.00 4.45
3452 8992 5.372363 TCCTTGAATAGATGGCCTGGAAATA 59.628 40.000 3.32 0.00 0.00 1.40
3475 9017 4.260170 CAATGGGCCTTAGATGATAGCTC 58.740 47.826 4.53 0.00 0.00 4.09
3480 9022 4.402793 GGGCCTTAGATGATAGCTCGATAA 59.597 45.833 0.84 0.00 0.00 1.75
3499 9041 9.363763 CTCGATAAGCAATAATGATGACTACAT 57.636 33.333 0.00 0.00 39.67 2.29
3512 9054 1.960689 GACTACATCCTCTCAGCCCTC 59.039 57.143 0.00 0.00 0.00 4.30
3513 9055 1.573376 ACTACATCCTCTCAGCCCTCT 59.427 52.381 0.00 0.00 0.00 3.69
3520 9062 0.463620 CTCTCAGCCCTCTAAGCCAC 59.536 60.000 0.00 0.00 0.00 5.01
3529 9071 2.158755 CCCTCTAAGCCACCCTTATGTG 60.159 54.545 0.00 0.00 35.56 3.21
3535 9077 3.214696 AGCCACCCTTATGTGCTATTC 57.785 47.619 0.00 0.00 34.85 1.75
3546 9088 0.733150 GTGCTATTCGGAAAGGTGGC 59.267 55.000 0.00 0.00 0.00 5.01
3551 9093 3.630312 GCTATTCGGAAAGGTGGCAATAA 59.370 43.478 0.00 0.00 0.00 1.40
3552 9094 4.497507 GCTATTCGGAAAGGTGGCAATAAC 60.498 45.833 0.00 0.00 0.00 1.89
3554 9096 3.080300 TCGGAAAGGTGGCAATAACAT 57.920 42.857 0.00 0.00 0.00 2.71
3555 9097 4.223556 TCGGAAAGGTGGCAATAACATA 57.776 40.909 0.00 0.00 0.00 2.29
3566 9108 7.280652 AGGTGGCAATAACATATTTTTCAATGC 59.719 33.333 0.00 0.00 0.00 3.56
3567 9109 7.280652 GGTGGCAATAACATATTTTTCAATGCT 59.719 33.333 0.00 0.00 0.00 3.79
3582 9124 9.770097 TTTTTCAATGCTAATAAACAATGGTGA 57.230 25.926 0.00 0.00 0.00 4.02
3583 9125 8.984891 TTTCAATGCTAATAAACAATGGTGAG 57.015 30.769 0.00 0.00 0.00 3.51
3601 9143 5.053145 GGTGAGTAATGCAGGTCATCTAAG 58.947 45.833 0.00 0.00 33.40 2.18
3605 9147 5.363939 AGTAATGCAGGTCATCTAAGAAGC 58.636 41.667 0.00 0.00 33.40 3.86
3615 9157 4.390297 GTCATCTAAGAAGCAGGTGTGAAC 59.610 45.833 0.00 0.00 0.00 3.18
3623 9165 4.947388 AGAAGCAGGTGTGAACTAACAAAA 59.053 37.500 0.00 0.00 0.00 2.44
3633 9175 7.381408 GGTGTGAACTAACAAAATAAAGAAGGC 59.619 37.037 0.00 0.00 0.00 4.35
3649 9191 0.183492 AGGCAAGCAAGTGAAGGACA 59.817 50.000 0.00 0.00 0.00 4.02
3652 9194 2.608752 GGCAAGCAAGTGAAGGACATTG 60.609 50.000 0.00 0.00 0.00 2.82
3661 9203 1.271108 TGAAGGACATTGCGCCTACAA 60.271 47.619 4.18 0.00 33.20 2.41
3662 9204 1.130561 GAAGGACATTGCGCCTACAAC 59.869 52.381 4.18 0.00 33.20 3.32
3663 9205 1.019278 AGGACATTGCGCCTACAACG 61.019 55.000 4.18 0.00 31.31 4.10
3664 9206 1.423845 GACATTGCGCCTACAACGG 59.576 57.895 4.18 0.00 31.03 4.44
3665 9207 1.004320 ACATTGCGCCTACAACGGA 60.004 52.632 4.18 0.00 31.03 4.69
3669 9211 0.669318 TTGCGCCTACAACGGAGAAG 60.669 55.000 4.18 0.00 30.79 2.85
3674 9216 1.207329 GCCTACAACGGAGAAGGTCAT 59.793 52.381 0.00 0.00 0.00 3.06
3684 9226 7.333672 ACAACGGAGAAGGTCATATTCTTTAAC 59.666 37.037 0.00 0.00 37.14 2.01
3720 9263 5.583061 TCAAAAAGAACGAGTTGTAAGAGCA 59.417 36.000 0.00 0.00 0.00 4.26
3723 9266 7.907214 AAAAGAACGAGTTGTAAGAGCATAT 57.093 32.000 0.00 0.00 0.00 1.78
3742 9285 5.450965 GCATATGAGGGCCAAATATGTATGC 60.451 44.000 26.42 20.34 36.87 3.14
3762 9305 3.881795 GCGATTGCAAGGATACATCTTG 58.118 45.455 4.94 0.00 43.10 3.02
3763 9306 3.304257 GCGATTGCAAGGATACATCTTGG 60.304 47.826 4.94 0.00 41.21 3.61
3764 9307 3.251729 CGATTGCAAGGATACATCTTGGG 59.748 47.826 4.94 0.00 41.21 4.12
3765 9308 4.464008 GATTGCAAGGATACATCTTGGGA 58.536 43.478 4.94 0.00 41.21 4.37
3766 9309 4.314522 TTGCAAGGATACATCTTGGGAA 57.685 40.909 0.00 0.00 41.21 3.97
3767 9310 4.314522 TGCAAGGATACATCTTGGGAAA 57.685 40.909 6.06 0.00 41.21 3.13
3768 9311 4.671831 TGCAAGGATACATCTTGGGAAAA 58.328 39.130 6.06 0.00 41.21 2.29
3769 9312 4.462483 TGCAAGGATACATCTTGGGAAAAC 59.538 41.667 6.06 0.00 41.21 2.43
3770 9313 4.462483 GCAAGGATACATCTTGGGAAAACA 59.538 41.667 6.06 0.00 41.21 2.83
3771 9314 5.622233 GCAAGGATACATCTTGGGAAAACAC 60.622 44.000 6.06 0.00 41.21 3.32
3772 9315 5.255397 AGGATACATCTTGGGAAAACACA 57.745 39.130 0.00 0.00 41.41 3.72
3773 9316 5.831103 AGGATACATCTTGGGAAAACACAT 58.169 37.500 0.00 0.00 41.41 3.21
3774 9317 5.888161 AGGATACATCTTGGGAAAACACATC 59.112 40.000 0.00 0.00 41.41 3.06
3775 9318 5.652014 GGATACATCTTGGGAAAACACATCA 59.348 40.000 0.00 0.00 0.00 3.07
3776 9319 6.152661 GGATACATCTTGGGAAAACACATCAA 59.847 38.462 0.00 0.00 0.00 2.57
3777 9320 5.867903 ACATCTTGGGAAAACACATCAAA 57.132 34.783 0.00 0.00 0.00 2.69
3778 9321 5.600696 ACATCTTGGGAAAACACATCAAAC 58.399 37.500 0.00 0.00 0.00 2.93
3779 9322 5.128499 ACATCTTGGGAAAACACATCAAACA 59.872 36.000 0.00 0.00 0.00 2.83
3780 9323 5.867903 TCTTGGGAAAACACATCAAACAT 57.132 34.783 0.00 0.00 0.00 2.71
3781 9324 6.968263 TCTTGGGAAAACACATCAAACATA 57.032 33.333 0.00 0.00 0.00 2.29
3782 9325 6.744112 TCTTGGGAAAACACATCAAACATAC 58.256 36.000 0.00 0.00 0.00 2.39
3783 9326 6.549364 TCTTGGGAAAACACATCAAACATACT 59.451 34.615 0.00 0.00 0.00 2.12
3784 9327 6.723298 TGGGAAAACACATCAAACATACTT 57.277 33.333 0.00 0.00 0.00 2.24
3785 9328 7.825331 TGGGAAAACACATCAAACATACTTA 57.175 32.000 0.00 0.00 0.00 2.24
3786 9329 8.415950 TGGGAAAACACATCAAACATACTTAT 57.584 30.769 0.00 0.00 0.00 1.73
3787 9330 9.521841 TGGGAAAACACATCAAACATACTTATA 57.478 29.630 0.00 0.00 0.00 0.98
3987 9530 8.956533 AATTTCCCAAATTTATCATAAACCCG 57.043 30.769 0.00 0.00 37.84 5.28
3988 9531 5.523438 TCCCAAATTTATCATAAACCCGC 57.477 39.130 0.00 0.00 0.00 6.13
3989 9532 4.342665 TCCCAAATTTATCATAAACCCGCC 59.657 41.667 0.00 0.00 0.00 6.13
3990 9533 4.343814 CCCAAATTTATCATAAACCCGCCT 59.656 41.667 0.00 0.00 0.00 5.52
3991 9534 5.288804 CCAAATTTATCATAAACCCGCCTG 58.711 41.667 0.00 0.00 0.00 4.85
3992 9535 5.163457 CCAAATTTATCATAAACCCGCCTGT 60.163 40.000 0.00 0.00 0.00 4.00
3993 9536 6.337356 CAAATTTATCATAAACCCGCCTGTT 58.663 36.000 0.00 0.00 0.00 3.16
3994 9537 6.538945 AATTTATCATAAACCCGCCTGTTT 57.461 33.333 0.00 3.98 41.18 2.83
3995 9538 5.986501 TTTATCATAAACCCGCCTGTTTT 57.013 34.783 3.85 0.00 39.15 2.43
3996 9539 5.986501 TTATCATAAACCCGCCTGTTTTT 57.013 34.783 3.85 0.00 39.15 1.94
4017 9560 6.459670 TTTTTCCTTGGAAACTAGACCAAC 57.540 37.500 13.73 0.00 40.59 3.77
4018 9561 4.781775 TTCCTTGGAAACTAGACCAACA 57.218 40.909 13.51 4.77 40.59 3.33
4019 9562 4.993705 TCCTTGGAAACTAGACCAACAT 57.006 40.909 13.51 0.00 40.59 2.71
4020 9563 6.442541 TTCCTTGGAAACTAGACCAACATA 57.557 37.500 13.51 3.93 40.59 2.29
4021 9564 6.442541 TCCTTGGAAACTAGACCAACATAA 57.557 37.500 13.51 0.00 40.59 1.90
4022 9565 6.843752 TCCTTGGAAACTAGACCAACATAAA 58.156 36.000 13.51 0.00 40.59 1.40
4023 9566 7.291566 TCCTTGGAAACTAGACCAACATAAAA 58.708 34.615 13.51 0.00 40.59 1.52
4024 9567 7.780745 TCCTTGGAAACTAGACCAACATAAAAA 59.219 33.333 13.51 0.00 40.59 1.94
4063 9606 2.815647 GCGAAGAGCCAGGTTCGG 60.816 66.667 11.54 1.30 44.55 4.30
4064 9607 2.657237 CGAAGAGCCAGGTTCGGT 59.343 61.111 3.26 0.00 41.47 4.69
4065 9608 1.738099 CGAAGAGCCAGGTTCGGTG 60.738 63.158 3.26 0.00 41.47 4.94
4066 9609 1.671742 GAAGAGCCAGGTTCGGTGA 59.328 57.895 0.00 0.00 0.00 4.02
4067 9610 0.034896 GAAGAGCCAGGTTCGGTGAA 59.965 55.000 0.00 0.00 0.00 3.18
4068 9611 0.250338 AAGAGCCAGGTTCGGTGAAC 60.250 55.000 0.00 1.09 41.32 3.18
4069 9612 1.070786 GAGCCAGGTTCGGTGAACA 59.929 57.895 11.39 0.00 43.54 3.18
4070 9613 0.534203 GAGCCAGGTTCGGTGAACAA 60.534 55.000 11.39 0.00 43.54 2.83
4071 9614 0.535102 AGCCAGGTTCGGTGAACAAG 60.535 55.000 11.39 3.47 43.54 3.16
4072 9615 1.949257 CCAGGTTCGGTGAACAAGC 59.051 57.895 11.39 0.00 43.54 4.01
4073 9616 0.535102 CCAGGTTCGGTGAACAAGCT 60.535 55.000 11.39 0.00 43.54 3.74
4074 9617 0.588252 CAGGTTCGGTGAACAAGCTG 59.412 55.000 11.39 6.14 43.54 4.24
4075 9618 0.468226 AGGTTCGGTGAACAAGCTGA 59.532 50.000 11.39 0.00 43.54 4.26
4076 9619 0.868406 GGTTCGGTGAACAAGCTGAG 59.132 55.000 11.39 0.00 43.54 3.35
4077 9620 1.583054 GTTCGGTGAACAAGCTGAGT 58.417 50.000 4.87 0.00 41.62 3.41
4078 9621 1.261619 GTTCGGTGAACAAGCTGAGTG 59.738 52.381 4.87 0.00 41.62 3.51
4079 9622 0.249868 TCGGTGAACAAGCTGAGTGG 60.250 55.000 0.00 0.00 0.00 4.00
4080 9623 0.249868 CGGTGAACAAGCTGAGTGGA 60.250 55.000 0.00 0.00 0.00 4.02
4081 9624 1.517242 GGTGAACAAGCTGAGTGGAG 58.483 55.000 0.00 0.00 0.00 3.86
4082 9625 0.871057 GTGAACAAGCTGAGTGGAGC 59.129 55.000 0.00 0.00 39.46 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.333898 GAAAATTTGCACGCGCCGC 62.334 57.895 5.73 10.65 37.32 6.53
8 9 2.715849 GGAAAATTTGCACGCGCCG 61.716 57.895 5.73 0.00 37.32 6.46
9 10 0.109504 TAGGAAAATTTGCACGCGCC 60.110 50.000 5.73 0.00 37.32 6.53
10 11 1.259316 CTAGGAAAATTTGCACGCGC 58.741 50.000 5.73 0.00 39.24 6.86
11 12 1.466950 TCCTAGGAAAATTTGCACGCG 59.533 47.619 9.71 3.53 0.00 6.01
12 13 2.488153 AGTCCTAGGAAAATTTGCACGC 59.512 45.455 14.65 0.00 0.00 5.34
13 14 5.873179 TTAGTCCTAGGAAAATTTGCACG 57.127 39.130 14.65 0.00 0.00 5.34
14 15 7.084486 CAGTTTAGTCCTAGGAAAATTTGCAC 58.916 38.462 14.65 6.00 0.00 4.57
15 16 6.294508 GCAGTTTAGTCCTAGGAAAATTTGCA 60.295 38.462 25.23 7.46 0.00 4.08
16 17 6.093404 GCAGTTTAGTCCTAGGAAAATTTGC 58.907 40.000 14.65 18.89 0.00 3.68
17 18 6.350194 GGGCAGTTTAGTCCTAGGAAAATTTG 60.350 42.308 14.65 14.01 0.00 2.32
18 19 5.715279 GGGCAGTTTAGTCCTAGGAAAATTT 59.285 40.000 14.65 1.97 0.00 1.82
19 20 5.262009 GGGCAGTTTAGTCCTAGGAAAATT 58.738 41.667 14.65 5.58 0.00 1.82
20 21 4.325109 GGGGCAGTTTAGTCCTAGGAAAAT 60.325 45.833 14.65 5.30 32.56 1.82
21 22 3.009805 GGGGCAGTTTAGTCCTAGGAAAA 59.990 47.826 14.65 8.88 32.56 2.29
22 23 2.574824 GGGGCAGTTTAGTCCTAGGAAA 59.425 50.000 14.65 1.76 32.56 3.13
23 24 2.193993 GGGGCAGTTTAGTCCTAGGAA 58.806 52.381 14.65 0.00 32.56 3.36
24 25 1.365028 AGGGGCAGTTTAGTCCTAGGA 59.635 52.381 7.62 7.62 32.56 2.94
25 26 1.880941 AGGGGCAGTTTAGTCCTAGG 58.119 55.000 0.82 0.82 32.56 3.02
26 27 3.912248 TCTAGGGGCAGTTTAGTCCTAG 58.088 50.000 8.06 8.06 45.03 3.02
27 28 4.554553 ATCTAGGGGCAGTTTAGTCCTA 57.445 45.455 0.00 0.00 32.56 2.94
28 29 2.942604 TCTAGGGGCAGTTTAGTCCT 57.057 50.000 0.00 0.00 32.56 3.85
29 30 5.625568 TTAATCTAGGGGCAGTTTAGTCC 57.374 43.478 0.00 0.00 0.00 3.85
30 31 6.036844 CGTTTTAATCTAGGGGCAGTTTAGTC 59.963 42.308 0.00 0.00 0.00 2.59
31 32 5.878669 CGTTTTAATCTAGGGGCAGTTTAGT 59.121 40.000 0.00 0.00 0.00 2.24
32 33 5.220796 GCGTTTTAATCTAGGGGCAGTTTAG 60.221 44.000 0.00 0.00 0.00 1.85
33 34 4.637091 GCGTTTTAATCTAGGGGCAGTTTA 59.363 41.667 0.00 0.00 0.00 2.01
34 35 3.442625 GCGTTTTAATCTAGGGGCAGTTT 59.557 43.478 0.00 0.00 0.00 2.66
35 36 3.014623 GCGTTTTAATCTAGGGGCAGTT 58.985 45.455 0.00 0.00 0.00 3.16
36 37 2.640184 GCGTTTTAATCTAGGGGCAGT 58.360 47.619 0.00 0.00 0.00 4.40
37 38 1.597663 CGCGTTTTAATCTAGGGGCAG 59.402 52.381 0.00 0.00 0.00 4.85
38 39 1.065998 ACGCGTTTTAATCTAGGGGCA 60.066 47.619 5.58 0.00 0.00 5.36
39 40 1.596260 GACGCGTTTTAATCTAGGGGC 59.404 52.381 15.53 0.00 0.00 5.80
40 41 2.207590 GGACGCGTTTTAATCTAGGGG 58.792 52.381 15.53 0.00 0.00 4.79
41 42 2.207590 GGGACGCGTTTTAATCTAGGG 58.792 52.381 15.53 0.00 0.00 3.53
42 43 2.207590 GGGGACGCGTTTTAATCTAGG 58.792 52.381 15.53 0.00 0.00 3.02
43 44 2.606272 GTGGGGACGCGTTTTAATCTAG 59.394 50.000 15.53 0.00 0.00 2.43
44 45 2.620242 GTGGGGACGCGTTTTAATCTA 58.380 47.619 15.53 0.00 0.00 1.98
45 46 1.445871 GTGGGGACGCGTTTTAATCT 58.554 50.000 15.53 0.00 0.00 2.40
46 47 0.448990 GGTGGGGACGCGTTTTAATC 59.551 55.000 15.53 0.00 43.50 1.75
47 48 0.037160 AGGTGGGGACGCGTTTTAAT 59.963 50.000 15.53 0.00 43.50 1.40
48 49 0.179023 AAGGTGGGGACGCGTTTTAA 60.179 50.000 15.53 0.00 45.82 1.52
49 50 0.885596 CAAGGTGGGGACGCGTTTTA 60.886 55.000 15.53 0.00 45.82 1.52
50 51 2.190841 CAAGGTGGGGACGCGTTTT 61.191 57.895 15.53 0.00 45.82 2.43
51 52 2.593436 CAAGGTGGGGACGCGTTT 60.593 61.111 15.53 0.00 45.82 3.60
53 54 4.309950 GACAAGGTGGGGACGCGT 62.310 66.667 13.85 13.85 43.50 6.01
54 55 4.308458 TGACAAGGTGGGGACGCG 62.308 66.667 3.53 3.53 43.50 6.01
55 56 2.668550 GTGACAAGGTGGGGACGC 60.669 66.667 0.00 0.00 41.20 5.19
56 57 2.357034 CGTGACAAGGTGGGGACG 60.357 66.667 0.00 0.00 0.00 4.79
57 58 1.004918 CTCGTGACAAGGTGGGGAC 60.005 63.158 0.00 0.00 0.00 4.46
58 59 0.178955 TACTCGTGACAAGGTGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
59 60 0.037605 GTACTCGTGACAAGGTGGGG 60.038 60.000 0.00 0.00 0.00 4.96
60 61 0.966920 AGTACTCGTGACAAGGTGGG 59.033 55.000 0.00 0.00 0.00 4.61
61 62 1.336887 CCAGTACTCGTGACAAGGTGG 60.337 57.143 0.00 0.00 0.00 4.61
62 63 1.935300 GCCAGTACTCGTGACAAGGTG 60.935 57.143 0.00 0.00 0.00 4.00
63 64 0.317479 GCCAGTACTCGTGACAAGGT 59.683 55.000 0.00 0.00 0.00 3.50
64 65 0.389948 GGCCAGTACTCGTGACAAGG 60.390 60.000 0.00 0.00 0.00 3.61
65 66 0.389948 GGGCCAGTACTCGTGACAAG 60.390 60.000 4.39 0.00 0.00 3.16
66 67 1.669440 GGGCCAGTACTCGTGACAA 59.331 57.895 4.39 0.00 0.00 3.18
67 68 2.280552 GGGGCCAGTACTCGTGACA 61.281 63.158 4.39 0.00 0.00 3.58
68 69 2.280552 TGGGGCCAGTACTCGTGAC 61.281 63.158 4.39 0.00 0.00 3.67
69 70 2.118732 TGGGGCCAGTACTCGTGA 59.881 61.111 4.39 0.00 0.00 4.35
70 71 2.227089 GAGTGGGGCCAGTACTCGTG 62.227 65.000 15.83 0.00 32.48 4.35
71 72 1.982938 GAGTGGGGCCAGTACTCGT 60.983 63.158 15.83 0.00 32.48 4.18
72 73 1.330655 ATGAGTGGGGCCAGTACTCG 61.331 60.000 21.85 0.00 42.80 4.18
73 74 0.912486 AATGAGTGGGGCCAGTACTC 59.088 55.000 21.09 21.09 40.85 2.59
74 75 1.372501 AAATGAGTGGGGCCAGTACT 58.627 50.000 4.39 6.44 0.00 2.73
75 76 2.215942 AAAATGAGTGGGGCCAGTAC 57.784 50.000 4.39 0.63 0.00 2.73
76 77 2.916934 ACTAAAATGAGTGGGGCCAGTA 59.083 45.455 4.39 0.00 0.00 2.74
77 78 1.710809 ACTAAAATGAGTGGGGCCAGT 59.289 47.619 4.39 0.00 0.00 4.00
78 79 2.514458 ACTAAAATGAGTGGGGCCAG 57.486 50.000 4.39 0.00 0.00 4.85
79 80 2.916934 AGTACTAAAATGAGTGGGGCCA 59.083 45.455 4.39 0.00 0.00 5.36
80 81 3.646736 AGTACTAAAATGAGTGGGGCC 57.353 47.619 0.00 0.00 0.00 5.80
81 82 4.094442 CGAAAGTACTAAAATGAGTGGGGC 59.906 45.833 0.00 0.00 0.00 5.80
82 83 4.094442 GCGAAAGTACTAAAATGAGTGGGG 59.906 45.833 0.00 0.00 0.00 4.96
83 84 4.201685 CGCGAAAGTACTAAAATGAGTGGG 60.202 45.833 0.00 0.00 0.00 4.61
84 85 4.387862 ACGCGAAAGTACTAAAATGAGTGG 59.612 41.667 15.93 0.00 0.00 4.00
85 86 5.511088 ACGCGAAAGTACTAAAATGAGTG 57.489 39.130 15.93 0.00 0.00 3.51
86 87 6.623223 GTACGCGAAAGTACTAAAATGAGT 57.377 37.500 15.93 0.00 42.58 3.41
96 97 3.001365 CCGATGAAAGTACGCGAAAGTAC 60.001 47.826 15.93 4.51 45.31 2.73
97 98 3.119884 TCCGATGAAAGTACGCGAAAGTA 60.120 43.478 15.93 0.00 0.00 2.24
98 99 1.990563 CCGATGAAAGTACGCGAAAGT 59.009 47.619 15.93 0.00 0.00 2.66
99 100 2.256174 TCCGATGAAAGTACGCGAAAG 58.744 47.619 15.93 0.00 0.00 2.62
100 101 2.256174 CTCCGATGAAAGTACGCGAAA 58.744 47.619 15.93 0.00 0.00 3.46
101 102 1.200716 ACTCCGATGAAAGTACGCGAA 59.799 47.619 15.93 0.00 0.00 4.70
102 103 0.806868 ACTCCGATGAAAGTACGCGA 59.193 50.000 15.93 0.00 0.00 5.87
103 104 2.107178 GTACTCCGATGAAAGTACGCG 58.893 52.381 3.53 3.53 38.72 6.01
106 107 4.641989 TGGGTAGTACTCCGATGAAAGTAC 59.358 45.833 0.00 4.85 45.30 2.73
107 108 4.858850 TGGGTAGTACTCCGATGAAAGTA 58.141 43.478 0.00 0.00 0.00 2.24
108 109 3.700038 CTGGGTAGTACTCCGATGAAAGT 59.300 47.826 0.00 0.00 0.00 2.66
109 110 3.700038 ACTGGGTAGTACTCCGATGAAAG 59.300 47.826 0.00 0.00 34.74 2.62
110 111 3.705051 ACTGGGTAGTACTCCGATGAAA 58.295 45.455 0.00 0.00 34.74 2.69
111 112 3.377253 ACTGGGTAGTACTCCGATGAA 57.623 47.619 0.00 0.00 34.74 2.57
121 122 8.692710 CAGACAAATATGAAGTACTGGGTAGTA 58.307 37.037 0.00 0.00 38.36 1.82
122 123 7.556844 CAGACAAATATGAAGTACTGGGTAGT 58.443 38.462 0.00 0.00 40.99 2.73
123 124 6.480320 GCAGACAAATATGAAGTACTGGGTAG 59.520 42.308 0.00 0.00 0.00 3.18
124 125 6.346096 GCAGACAAATATGAAGTACTGGGTA 58.654 40.000 0.00 0.00 0.00 3.69
125 126 5.186198 GCAGACAAATATGAAGTACTGGGT 58.814 41.667 0.00 0.00 0.00 4.51
126 127 4.576463 GGCAGACAAATATGAAGTACTGGG 59.424 45.833 0.00 0.00 0.00 4.45
127 128 4.271049 CGGCAGACAAATATGAAGTACTGG 59.729 45.833 0.00 0.00 0.00 4.00
128 129 4.870426 ACGGCAGACAAATATGAAGTACTG 59.130 41.667 0.00 0.00 0.00 2.74
129 130 5.086104 ACGGCAGACAAATATGAAGTACT 57.914 39.130 0.00 0.00 0.00 2.73
130 131 5.796350 AACGGCAGACAAATATGAAGTAC 57.204 39.130 0.00 0.00 0.00 2.73
131 132 7.908827 TTTAACGGCAGACAAATATGAAGTA 57.091 32.000 0.00 0.00 0.00 2.24
132 133 6.811253 TTTAACGGCAGACAAATATGAAGT 57.189 33.333 0.00 0.00 0.00 3.01
133 134 6.628856 CGATTTAACGGCAGACAAATATGAAG 59.371 38.462 0.00 0.00 0.00 3.02
134 135 6.314152 TCGATTTAACGGCAGACAAATATGAA 59.686 34.615 0.00 0.00 0.00 2.57
135 136 5.813157 TCGATTTAACGGCAGACAAATATGA 59.187 36.000 0.00 0.00 0.00 2.15
136 137 5.901884 GTCGATTTAACGGCAGACAAATATG 59.098 40.000 0.00 0.00 37.83 1.78
137 138 5.583061 TGTCGATTTAACGGCAGACAAATAT 59.417 36.000 0.00 0.00 42.82 1.28
138 139 4.930405 TGTCGATTTAACGGCAGACAAATA 59.070 37.500 0.00 0.00 42.82 1.40
139 140 3.749088 TGTCGATTTAACGGCAGACAAAT 59.251 39.130 0.00 0.00 42.82 2.32
140 141 3.132160 TGTCGATTTAACGGCAGACAAA 58.868 40.909 0.00 0.00 42.82 2.83
141 142 2.756829 TGTCGATTTAACGGCAGACAA 58.243 42.857 0.00 0.00 42.82 3.18
142 143 2.442212 TGTCGATTTAACGGCAGACA 57.558 45.000 0.00 0.00 42.82 3.41
147 148 2.346244 TCGTTGATGTCGATTTAACGGC 59.654 45.455 20.29 0.00 42.90 5.68
148 149 4.320491 GTTCGTTGATGTCGATTTAACGG 58.680 43.478 20.29 8.72 42.90 4.44
149 150 4.004455 CGTTCGTTGATGTCGATTTAACG 58.996 43.478 16.84 16.84 43.73 3.18
150 151 4.143263 ACCGTTCGTTGATGTCGATTTAAC 60.143 41.667 0.00 0.00 37.18 2.01
151 152 3.989167 ACCGTTCGTTGATGTCGATTTAA 59.011 39.130 0.00 0.00 37.18 1.52
152 153 3.577667 ACCGTTCGTTGATGTCGATTTA 58.422 40.909 0.00 0.00 37.18 1.40
153 154 2.409975 ACCGTTCGTTGATGTCGATTT 58.590 42.857 0.00 0.00 37.18 2.17
154 155 2.074547 ACCGTTCGTTGATGTCGATT 57.925 45.000 0.00 0.00 37.18 3.34
155 156 1.990563 GAACCGTTCGTTGATGTCGAT 59.009 47.619 0.00 0.00 37.18 3.59
156 157 1.001048 AGAACCGTTCGTTGATGTCGA 60.001 47.619 5.62 0.00 33.74 4.20
157 158 1.415374 AGAACCGTTCGTTGATGTCG 58.585 50.000 5.62 0.00 33.74 4.35
158 159 4.977741 TTTAGAACCGTTCGTTGATGTC 57.022 40.909 5.62 0.00 33.74 3.06
159 160 5.738118 TTTTTAGAACCGTTCGTTGATGT 57.262 34.783 5.62 0.00 33.74 3.06
178 179 4.714802 AGTTTTAGAGTGGTTGGGCTTTTT 59.285 37.500 0.00 0.00 0.00 1.94
179 180 4.286707 AGTTTTAGAGTGGTTGGGCTTTT 58.713 39.130 0.00 0.00 0.00 2.27
180 181 3.910989 AGTTTTAGAGTGGTTGGGCTTT 58.089 40.909 0.00 0.00 0.00 3.51
181 182 3.595190 AGTTTTAGAGTGGTTGGGCTT 57.405 42.857 0.00 0.00 0.00 4.35
182 183 3.222603 CAAGTTTTAGAGTGGTTGGGCT 58.777 45.455 0.00 0.00 0.00 5.19
183 184 2.956333 ACAAGTTTTAGAGTGGTTGGGC 59.044 45.455 0.00 0.00 0.00 5.36
184 185 5.127491 TGTACAAGTTTTAGAGTGGTTGGG 58.873 41.667 0.00 0.00 0.00 4.12
185 186 6.687081 TTGTACAAGTTTTAGAGTGGTTGG 57.313 37.500 3.59 0.00 0.00 3.77
186 187 9.581099 AAAATTGTACAAGTTTTAGAGTGGTTG 57.419 29.630 24.15 0.00 35.39 3.77
223 224 5.222673 ACCCTCCCTTACCCAAAATACATTT 60.223 40.000 0.00 0.00 0.00 2.32
262 263 9.868160 AAATTTCTAGGGGGAAATAACTCTATG 57.132 33.333 3.40 0.00 42.77 2.23
309 310 0.250727 TTGGTGGTGCTAGACAAGGC 60.251 55.000 0.00 0.00 0.00 4.35
330 331 4.961637 CCAATCGATGGTGCCTCA 57.038 55.556 0.00 0.00 44.85 3.86
446 467 8.244802 GTCGGATAATCTATGTAGCTTGTACAT 58.755 37.037 5.92 5.92 40.77 2.29
448 469 7.818642 AGTCGGATAATCTATGTAGCTTGTAC 58.181 38.462 0.00 0.00 0.00 2.90
490 511 0.248743 GGATGTGCCATGACGCATTG 60.249 55.000 9.53 0.00 40.74 2.82
555 576 4.158579 TGGAGTACAAAACACACATTTGCA 59.841 37.500 0.00 0.00 40.58 4.08
627 4192 3.993920 ACCAAACATGACATTTTGAGCC 58.006 40.909 17.43 0.00 35.13 4.70
628 4193 5.291971 AGAACCAAACATGACATTTTGAGC 58.708 37.500 17.43 10.24 35.13 4.26
629 4194 7.775397 AAAGAACCAAACATGACATTTTGAG 57.225 32.000 17.43 12.53 35.13 3.02
630 4195 8.474025 ACTAAAGAACCAAACATGACATTTTGA 58.526 29.630 17.43 3.47 35.13 2.69
631 4196 8.542132 CACTAAAGAACCAAACATGACATTTTG 58.458 33.333 0.00 0.00 33.30 2.44
632 4197 8.257306 ACACTAAAGAACCAAACATGACATTTT 58.743 29.630 0.00 0.00 0.00 1.82
716 5390 4.359105 AGGTTGGATGTAGTACTGCCTTA 58.641 43.478 5.39 0.00 0.00 2.69
746 5420 2.498167 TGGCTTGAGCTCAGACTTTTC 58.502 47.619 17.43 4.68 41.70 2.29
833 5508 3.416156 AGAAGAAACAGATCTGGTTGGC 58.584 45.455 30.28 16.59 41.20 4.52
845 5520 3.202151 AGGAACTTGGTGGAGAAGAAACA 59.798 43.478 0.00 0.00 27.25 2.83
891 5572 1.564348 ACCTTCTTGTGGACAGTTGGT 59.436 47.619 0.00 0.00 0.00 3.67
893 5590 1.334869 GCACCTTCTTGTGGACAGTTG 59.665 52.381 0.00 0.00 36.73 3.16
895 5592 0.546122 TGCACCTTCTTGTGGACAGT 59.454 50.000 0.00 0.00 36.73 3.55
903 5600 5.123027 GTCTAAGGATTCTTGCACCTTCTTG 59.877 44.000 8.70 2.62 42.13 3.02
907 5604 4.640771 TGTCTAAGGATTCTTGCACCTT 57.359 40.909 10.14 10.14 44.67 3.50
909 5606 5.393461 CCATTTGTCTAAGGATTCTTGCACC 60.393 44.000 0.00 0.00 34.59 5.01
912 5609 4.440663 GCCCATTTGTCTAAGGATTCTTGC 60.441 45.833 0.00 0.00 34.59 4.01
914 5611 4.706962 GTGCCCATTTGTCTAAGGATTCTT 59.293 41.667 0.00 0.00 37.03 2.52
932 5629 1.205417 CACAGAATTCCAATGGTGCCC 59.795 52.381 0.65 0.00 0.00 5.36
954 5651 5.333513 CGACGGAATATATAGAAGGCAGTC 58.666 45.833 0.00 0.00 0.00 3.51
1024 5721 3.320610 AATGGAGGAAGAGATCGAGGA 57.679 47.619 0.00 0.00 0.00 3.71
1028 5725 3.065925 GCCAAAAATGGAGGAAGAGATCG 59.934 47.826 0.00 0.00 0.00 3.69
1029 5726 4.276642 AGCCAAAAATGGAGGAAGAGATC 58.723 43.478 0.00 0.00 0.00 2.75
1030 5727 4.276642 GAGCCAAAAATGGAGGAAGAGAT 58.723 43.478 0.00 0.00 0.00 2.75
1031 5728 3.690460 GAGCCAAAAATGGAGGAAGAGA 58.310 45.455 0.00 0.00 0.00 3.10
1032 5729 2.421424 CGAGCCAAAAATGGAGGAAGAG 59.579 50.000 0.00 0.00 0.00 2.85
1047 5744 4.996976 GCTCTGTTTCTCGAGCCA 57.003 55.556 7.81 3.34 45.21 4.75
1061 5764 1.200948 GCAGTCCAAGAACCATTGCTC 59.799 52.381 0.00 0.00 0.00 4.26
1224 5927 3.534056 CCGACGGGGAAGCGGTAT 61.534 66.667 5.81 0.00 40.17 2.73
1497 6302 1.281419 TATGGAAAGCGGGGTTGAGA 58.719 50.000 0.00 0.00 0.00 3.27
1509 6314 4.162320 ACCTTGAGCTTCTCGATATGGAAA 59.838 41.667 0.00 0.00 32.35 3.13
1562 6367 9.307121 CCAGTACAGTAGTCTGATAAAGAAATG 57.693 37.037 0.00 0.00 43.76 2.32
1587 6392 6.542370 TCAATGGAAACTAATACTAGCTTGCC 59.458 38.462 0.00 0.00 0.00 4.52
1739 6553 0.868406 CAACCGTCAGAACCAAGAGC 59.132 55.000 0.00 0.00 0.00 4.09
1872 6686 3.434319 CAATGCGGTCGGCTTGCT 61.434 61.111 3.87 0.00 44.05 3.91
1894 6708 8.046107 CCAGGAATGAAGATCTTCTTAACTTCT 58.954 37.037 30.45 14.42 36.73 2.85
1958 6772 3.743521 ACATGCATGCCTACGTCATTAT 58.256 40.909 26.53 0.00 0.00 1.28
1963 6777 0.657840 GGAACATGCATGCCTACGTC 59.342 55.000 26.53 13.20 0.00 4.34
1969 7062 1.273048 TGTTTCAGGAACATGCATGCC 59.727 47.619 26.53 19.59 43.13 4.40
1988 7081 7.119262 ACTCCGGTAAAGATGTAAAAACAGATG 59.881 37.037 0.00 0.00 0.00 2.90
1991 7084 6.796705 ACTCCGGTAAAGATGTAAAAACAG 57.203 37.500 0.00 0.00 0.00 3.16
2003 7458 5.657474 TGCTAAATCAGTACTCCGGTAAAG 58.343 41.667 0.00 0.00 0.00 1.85
2009 7464 4.371855 TCACTGCTAAATCAGTACTCCG 57.628 45.455 0.00 0.00 44.81 4.63
2010 7465 5.755861 GGATTCACTGCTAAATCAGTACTCC 59.244 44.000 0.00 0.82 44.81 3.85
2031 7486 6.494893 ACGCGCATTTTACAATATATGGAT 57.505 33.333 5.73 0.00 0.00 3.41
2033 7488 6.827641 AGTACGCGCATTTTACAATATATGG 58.172 36.000 5.73 0.00 0.00 2.74
2035 7490 7.646446 TGAGTACGCGCATTTTACAATATAT 57.354 32.000 5.73 0.00 0.00 0.86
2036 7491 7.646446 ATGAGTACGCGCATTTTACAATATA 57.354 32.000 5.73 0.00 30.99 0.86
2037 7492 5.977171 TGAGTACGCGCATTTTACAATAT 57.023 34.783 5.73 0.00 0.00 1.28
2039 7494 4.875544 ATGAGTACGCGCATTTTACAAT 57.124 36.364 5.73 0.00 30.99 2.71
2050 7516 1.852895 GGTCTGCTAAATGAGTACGCG 59.147 52.381 3.53 3.53 0.00 6.01
2051 7517 2.860735 CAGGTCTGCTAAATGAGTACGC 59.139 50.000 0.00 0.00 0.00 4.42
2052 7518 4.371855 TCAGGTCTGCTAAATGAGTACG 57.628 45.455 0.00 0.00 0.00 3.67
2677 8208 0.179089 GCAGCTCGATGATCACACCT 60.179 55.000 0.00 0.00 0.00 4.00
2704 8235 0.837272 CGGGGTCATGGTGGATAAGT 59.163 55.000 0.00 0.00 0.00 2.24
2722 8253 1.270305 ACATCGCTTCCCCATATGTCG 60.270 52.381 1.24 0.00 0.00 4.35
2782 8313 1.478288 CCAGGATCCTTGGATGCCTTC 60.478 57.143 13.00 0.00 0.00 3.46
3054 8586 3.278574 TGAAAGCTTATTACATGGCGCT 58.721 40.909 7.64 0.00 0.00 5.92
3055 8587 3.691049 TGAAAGCTTATTACATGGCGC 57.309 42.857 0.00 0.00 0.00 6.53
3056 8588 6.545504 AGTATGAAAGCTTATTACATGGCG 57.454 37.500 0.00 0.00 0.00 5.69
3084 8616 9.685276 ACATGATTGGACTTTATTTCAGACATA 57.315 29.630 0.00 0.00 0.00 2.29
3089 8621 7.062605 GTGCAACATGATTGGACTTTATTTCAG 59.937 37.037 18.42 0.00 37.69 3.02
3175 8707 4.324830 AGGGGGTATATTCCTTTCCACAT 58.675 43.478 0.00 0.00 0.00 3.21
3201 8733 3.797039 CACATGAAGGAAGGATAGCGAA 58.203 45.455 0.00 0.00 0.00 4.70
3219 8755 6.048732 TGAAGTGACATCTTAATAGGCACA 57.951 37.500 9.67 0.00 0.00 4.57
3258 8794 4.178956 AGTGCCCTTTGACTTTCCTTTA 57.821 40.909 0.00 0.00 0.00 1.85
3270 8806 1.382914 ATGGACCCTTAGTGCCCTTT 58.617 50.000 0.00 0.00 35.58 3.11
3271 8807 1.382914 AATGGACCCTTAGTGCCCTT 58.617 50.000 0.00 0.00 35.58 3.95
3273 8809 1.272480 ACAAATGGACCCTTAGTGCCC 60.272 52.381 0.00 0.00 35.58 5.36
3316 8853 3.142787 CCCCTCCAATGGATATTTCCCTT 59.857 47.826 0.87 0.00 41.83 3.95
3322 8859 4.015730 TGGTTTTCCCCTCCAATGGATATT 60.016 41.667 0.87 0.00 39.73 1.28
3332 8869 2.375014 TCTTGTTGGTTTTCCCCTCC 57.625 50.000 0.00 0.00 39.73 4.30
3333 8870 3.496331 TGATCTTGTTGGTTTTCCCCTC 58.504 45.455 0.00 0.00 39.73 4.30
3334 8871 3.611025 TGATCTTGTTGGTTTTCCCCT 57.389 42.857 0.00 0.00 39.73 4.79
3335 8872 4.890158 ATTGATCTTGTTGGTTTTCCCC 57.110 40.909 0.00 0.00 39.73 4.81
3337 8874 6.744112 TGTGTATTGATCTTGTTGGTTTTCC 58.256 36.000 0.00 0.00 41.14 3.13
3344 8884 7.120285 ACTCCTGAATGTGTATTGATCTTGTTG 59.880 37.037 0.00 0.00 0.00 3.33
3356 8896 3.483808 TTGCACACTCCTGAATGTGTA 57.516 42.857 10.07 3.26 46.48 2.90
3371 8911 0.389025 CCTTCCCACACCTTTTGCAC 59.611 55.000 0.00 0.00 0.00 4.57
3374 8914 1.144913 TCCTCCTTCCCACACCTTTTG 59.855 52.381 0.00 0.00 0.00 2.44
3380 8920 2.586648 AATGTTCCTCCTTCCCACAC 57.413 50.000 0.00 0.00 0.00 3.82
3401 8941 4.022068 TCATTAGCAAAGCAAAGGTGGAAG 60.022 41.667 0.00 0.00 0.00 3.46
3409 8949 6.209192 TCAAGGAAGATCATTAGCAAAGCAAA 59.791 34.615 0.00 0.00 0.00 3.68
3420 8960 6.008960 GGCCATCTATTCAAGGAAGATCATT 58.991 40.000 0.00 0.00 0.00 2.57
3436 8976 4.447616 CCCATTGTATTTCCAGGCCATCTA 60.448 45.833 5.01 0.00 0.00 1.98
3444 8984 4.792068 TCTAAGGCCCATTGTATTTCCAG 58.208 43.478 0.00 0.00 0.00 3.86
3445 8985 4.871871 TCTAAGGCCCATTGTATTTCCA 57.128 40.909 0.00 0.00 0.00 3.53
3447 8987 7.148171 GCTATCATCTAAGGCCCATTGTATTTC 60.148 40.741 0.00 0.00 0.00 2.17
3452 8992 3.654806 AGCTATCATCTAAGGCCCATTGT 59.345 43.478 0.00 0.00 0.00 2.71
3494 9036 2.380064 AGAGGGCTGAGAGGATGTAG 57.620 55.000 0.00 0.00 0.00 2.74
3499 9041 0.397816 GGCTTAGAGGGCTGAGAGGA 60.398 60.000 0.00 0.00 29.66 3.71
3512 9054 2.717639 AGCACATAAGGGTGGCTTAG 57.282 50.000 0.00 0.00 39.19 2.18
3513 9055 4.714632 GAATAGCACATAAGGGTGGCTTA 58.285 43.478 0.00 0.00 39.19 3.09
3520 9062 3.815401 CCTTTCCGAATAGCACATAAGGG 59.185 47.826 0.00 0.00 0.00 3.95
3529 9071 1.459450 TTGCCACCTTTCCGAATAGC 58.541 50.000 0.00 0.00 0.00 2.97
3535 9077 5.514274 AATATGTTATTGCCACCTTTCCG 57.486 39.130 0.00 0.00 0.00 4.30
3566 9108 8.131100 CCTGCATTACTCACCATTGTTTATTAG 58.869 37.037 0.00 0.00 0.00 1.73
3567 9109 7.613801 ACCTGCATTACTCACCATTGTTTATTA 59.386 33.333 0.00 0.00 0.00 0.98
3570 9112 5.321102 ACCTGCATTACTCACCATTGTTTA 58.679 37.500 0.00 0.00 0.00 2.01
3573 9115 3.244875 TGACCTGCATTACTCACCATTGT 60.245 43.478 0.00 0.00 0.00 2.71
3575 9117 3.719268 TGACCTGCATTACTCACCATT 57.281 42.857 0.00 0.00 0.00 3.16
3576 9118 3.457380 AGATGACCTGCATTACTCACCAT 59.543 43.478 0.00 0.00 37.34 3.55
3579 9121 5.907207 TCTTAGATGACCTGCATTACTCAC 58.093 41.667 0.00 0.00 37.34 3.51
3580 9122 6.544928 TTCTTAGATGACCTGCATTACTCA 57.455 37.500 0.00 0.00 37.34 3.41
3581 9123 5.465056 GCTTCTTAGATGACCTGCATTACTC 59.535 44.000 0.00 0.00 37.34 2.59
3582 9124 5.104776 TGCTTCTTAGATGACCTGCATTACT 60.105 40.000 0.00 0.00 37.34 2.24
3583 9125 5.118990 TGCTTCTTAGATGACCTGCATTAC 58.881 41.667 0.00 0.00 37.34 1.89
3601 9143 4.893424 TTTGTTAGTTCACACCTGCTTC 57.107 40.909 0.00 0.00 0.00 3.86
3605 9147 9.450807 CTTCTTTATTTTGTTAGTTCACACCTG 57.549 33.333 0.00 0.00 0.00 4.00
3615 9157 7.653311 ACTTGCTTGCCTTCTTTATTTTGTTAG 59.347 33.333 0.00 0.00 0.00 2.34
3623 9165 4.219288 CCTTCACTTGCTTGCCTTCTTTAT 59.781 41.667 0.00 0.00 0.00 1.40
3633 9175 2.669364 GCAATGTCCTTCACTTGCTTG 58.331 47.619 0.00 0.00 37.47 4.01
3649 9191 0.036765 TTCTCCGTTGTAGGCGCAAT 60.037 50.000 10.83 0.00 0.00 3.56
3652 9194 1.810030 CCTTCTCCGTTGTAGGCGC 60.810 63.158 0.00 0.00 0.00 6.53
3661 9203 6.070424 TGGTTAAAGAATATGACCTTCTCCGT 60.070 38.462 0.00 0.00 31.83 4.69
3662 9204 6.346096 TGGTTAAAGAATATGACCTTCTCCG 58.654 40.000 0.00 0.00 31.83 4.63
3663 9205 8.753497 ATTGGTTAAAGAATATGACCTTCTCC 57.247 34.615 0.00 0.00 31.83 3.71
3698 9240 6.619801 ATGCTCTTACAACTCGTTCTTTTT 57.380 33.333 0.00 0.00 0.00 1.94
3716 9259 4.338879 ACATATTTGGCCCTCATATGCTC 58.661 43.478 19.04 0.00 35.20 4.26
3720 9263 4.883585 CGCATACATATTTGGCCCTCATAT 59.116 41.667 0.00 0.00 0.00 1.78
3723 9266 2.105649 TCGCATACATATTTGGCCCTCA 59.894 45.455 0.00 0.00 0.00 3.86
3742 9285 3.251729 CCCAAGATGTATCCTTGCAATCG 59.748 47.826 0.00 0.00 39.60 3.34
3751 9294 5.652014 TGATGTGTTTTCCCAAGATGTATCC 59.348 40.000 0.00 0.00 0.00 2.59
3752 9295 6.757897 TGATGTGTTTTCCCAAGATGTATC 57.242 37.500 0.00 0.00 0.00 2.24
3753 9296 7.015098 TGTTTGATGTGTTTTCCCAAGATGTAT 59.985 33.333 0.00 0.00 0.00 2.29
3754 9297 6.322456 TGTTTGATGTGTTTTCCCAAGATGTA 59.678 34.615 0.00 0.00 0.00 2.29
3755 9298 5.128499 TGTTTGATGTGTTTTCCCAAGATGT 59.872 36.000 0.00 0.00 0.00 3.06
3756 9299 5.599732 TGTTTGATGTGTTTTCCCAAGATG 58.400 37.500 0.00 0.00 0.00 2.90
3757 9300 5.867903 TGTTTGATGTGTTTTCCCAAGAT 57.132 34.783 0.00 0.00 0.00 2.40
3758 9301 5.867903 ATGTTTGATGTGTTTTCCCAAGA 57.132 34.783 0.00 0.00 0.00 3.02
3759 9302 6.748132 AGTATGTTTGATGTGTTTTCCCAAG 58.252 36.000 0.00 0.00 0.00 3.61
3760 9303 6.723298 AGTATGTTTGATGTGTTTTCCCAA 57.277 33.333 0.00 0.00 0.00 4.12
3761 9304 6.723298 AAGTATGTTTGATGTGTTTTCCCA 57.277 33.333 0.00 0.00 0.00 4.37
3962 9505 7.497579 GCGGGTTTATGATAAATTTGGGAAATT 59.502 33.333 0.00 0.00 42.62 1.82
3963 9506 6.989759 GCGGGTTTATGATAAATTTGGGAAAT 59.010 34.615 0.00 0.00 0.00 2.17
3964 9507 6.342111 GCGGGTTTATGATAAATTTGGGAAA 58.658 36.000 0.00 0.00 0.00 3.13
3965 9508 5.163395 GGCGGGTTTATGATAAATTTGGGAA 60.163 40.000 0.00 0.00 0.00 3.97
3966 9509 4.342665 GGCGGGTTTATGATAAATTTGGGA 59.657 41.667 0.00 0.00 0.00 4.37
3967 9510 4.343814 AGGCGGGTTTATGATAAATTTGGG 59.656 41.667 0.00 0.00 0.00 4.12
3968 9511 5.163457 ACAGGCGGGTTTATGATAAATTTGG 60.163 40.000 0.00 0.00 0.00 3.28
3969 9512 5.901552 ACAGGCGGGTTTATGATAAATTTG 58.098 37.500 0.00 0.00 0.00 2.32
3970 9513 6.538945 AACAGGCGGGTTTATGATAAATTT 57.461 33.333 0.43 0.00 0.00 1.82
3971 9514 6.538945 AAACAGGCGGGTTTATGATAAATT 57.461 33.333 8.27 0.00 39.10 1.82
3972 9515 6.538945 AAAACAGGCGGGTTTATGATAAAT 57.461 33.333 0.00 0.00 39.93 1.40
3973 9516 5.986501 AAAACAGGCGGGTTTATGATAAA 57.013 34.783 0.00 0.00 39.93 1.40
3974 9517 5.986501 AAAAACAGGCGGGTTTATGATAA 57.013 34.783 0.00 0.00 39.93 1.75
3994 9537 5.952947 TGTTGGTCTAGTTTCCAAGGAAAAA 59.047 36.000 15.37 6.75 44.40 1.94
3995 9538 5.511363 TGTTGGTCTAGTTTCCAAGGAAAA 58.489 37.500 15.37 1.22 44.40 2.29
3996 9539 5.118729 TGTTGGTCTAGTTTCCAAGGAAA 57.881 39.130 10.12 10.12 43.16 3.13
3997 9540 4.781775 TGTTGGTCTAGTTTCCAAGGAA 57.218 40.909 13.76 0.00 43.16 3.36
3998 9541 4.993705 ATGTTGGTCTAGTTTCCAAGGA 57.006 40.909 13.76 7.27 43.16 3.36
3999 9542 7.519032 TTTTATGTTGGTCTAGTTTCCAAGG 57.481 36.000 13.76 0.00 43.16 3.61
4037 9580 0.467290 TGGCTCTTCGCTGGGTTTTT 60.467 50.000 0.00 0.00 39.13 1.94
4038 9581 0.890996 CTGGCTCTTCGCTGGGTTTT 60.891 55.000 0.00 0.00 39.13 2.43
4039 9582 1.302832 CTGGCTCTTCGCTGGGTTT 60.303 57.895 0.00 0.00 39.13 3.27
4040 9583 2.348998 CTGGCTCTTCGCTGGGTT 59.651 61.111 0.00 0.00 39.13 4.11
4041 9584 3.710722 CCTGGCTCTTCGCTGGGT 61.711 66.667 0.00 0.00 39.13 4.51
4042 9585 3.259633 AACCTGGCTCTTCGCTGGG 62.260 63.158 0.00 0.00 39.13 4.45
4043 9586 1.743252 GAACCTGGCTCTTCGCTGG 60.743 63.158 0.00 0.00 39.13 4.85
4044 9587 2.097038 CGAACCTGGCTCTTCGCTG 61.097 63.158 5.20 0.00 39.13 5.18
4045 9588 2.262915 CGAACCTGGCTCTTCGCT 59.737 61.111 5.20 0.00 39.13 4.93
4046 9589 2.815647 CCGAACCTGGCTCTTCGC 60.816 66.667 11.24 0.00 38.34 4.70
4047 9590 1.738099 CACCGAACCTGGCTCTTCG 60.738 63.158 10.08 10.08 39.19 3.79
4048 9591 0.034896 TTCACCGAACCTGGCTCTTC 59.965 55.000 0.00 0.00 0.00 2.87
4049 9592 0.250338 GTTCACCGAACCTGGCTCTT 60.250 55.000 0.00 0.00 36.65 2.85
4050 9593 1.371558 GTTCACCGAACCTGGCTCT 59.628 57.895 0.00 0.00 36.65 4.09
4051 9594 0.534203 TTGTTCACCGAACCTGGCTC 60.534 55.000 4.51 0.00 41.35 4.70
4052 9595 0.535102 CTTGTTCACCGAACCTGGCT 60.535 55.000 4.51 0.00 41.35 4.75
4053 9596 1.949257 CTTGTTCACCGAACCTGGC 59.051 57.895 4.51 0.00 41.35 4.85
4054 9597 0.535102 AGCTTGTTCACCGAACCTGG 60.535 55.000 4.51 0.00 41.35 4.45
4055 9598 0.588252 CAGCTTGTTCACCGAACCTG 59.412 55.000 4.51 1.77 41.35 4.00
4056 9599 0.468226 TCAGCTTGTTCACCGAACCT 59.532 50.000 4.51 0.00 41.35 3.50
4057 9600 0.868406 CTCAGCTTGTTCACCGAACC 59.132 55.000 4.51 0.00 41.35 3.62
4058 9601 1.261619 CACTCAGCTTGTTCACCGAAC 59.738 52.381 0.00 0.00 42.26 3.95
4059 9602 1.581934 CACTCAGCTTGTTCACCGAA 58.418 50.000 0.00 0.00 0.00 4.30
4060 9603 0.249868 CCACTCAGCTTGTTCACCGA 60.250 55.000 0.00 0.00 0.00 4.69
4061 9604 0.249868 TCCACTCAGCTTGTTCACCG 60.250 55.000 0.00 0.00 0.00 4.94
4062 9605 1.517242 CTCCACTCAGCTTGTTCACC 58.483 55.000 0.00 0.00 0.00 4.02
4063 9606 0.871057 GCTCCACTCAGCTTGTTCAC 59.129 55.000 0.00 0.00 36.38 3.18
4064 9607 3.312404 GCTCCACTCAGCTTGTTCA 57.688 52.632 0.00 0.00 36.38 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.