Multiple sequence alignment - TraesCS6B01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G416600 chr6B 100.000 4099 0 0 1 4099 688782250 688778152 0.000000e+00 7570.0
1 TraesCS6B01G416600 chr6B 80.623 289 46 7 241 524 36358223 36358506 8.920000e-52 215.0
2 TraesCS6B01G416600 chr6B 86.628 172 14 5 3795 3959 44822995 44823164 9.050000e-42 182.0
3 TraesCS6B01G416600 chr6B 87.000 100 12 1 530 629 51354351 51354449 1.200000e-20 111.0
4 TraesCS6B01G416600 chr6B 87.879 66 7 1 521 586 51385184 51385120 4.390000e-10 76.8
5 TraesCS6B01G416600 chr6D 91.403 1233 81 9 1864 3073 453170711 453171941 0.000000e+00 1666.0
6 TraesCS6B01G416600 chr6D 87.300 811 62 12 1071 1866 453169835 453170619 0.000000e+00 889.0
7 TraesCS6B01G416600 chr6D 85.047 749 78 14 3371 4099 453172307 453173041 0.000000e+00 732.0
8 TraesCS6B01G416600 chr6D 87.705 244 27 1 5 248 453167163 453167403 8.670000e-72 281.0
9 TraesCS6B01G416600 chr6D 90.566 212 14 3 2915 3120 453171953 453172164 4.040000e-70 276.0
10 TraesCS6B01G416600 chr6D 94.410 161 9 0 684 844 453167388 453167548 8.800000e-62 248.0
11 TraesCS6B01G416600 chr6A 90.271 1254 78 17 1840 3073 599165872 599167101 0.000000e+00 1600.0
12 TraesCS6B01G416600 chr6A 86.530 928 94 14 2916 3827 599167122 599168034 0.000000e+00 992.0
13 TraesCS6B01G416600 chr6A 85.787 781 55 19 1034 1794 599165112 599165856 0.000000e+00 776.0
14 TraesCS6B01G416600 chr6A 92.929 198 14 0 17 214 599164067 599164264 5.180000e-74 289.0
15 TraesCS6B01G416600 chr6A 91.111 90 6 2 943 1031 599164975 599165063 2.000000e-23 121.0
16 TraesCS6B01G416600 chr7A 84.893 1218 152 17 1252 2448 506131790 506130584 0.000000e+00 1201.0
17 TraesCS6B01G416600 chr7A 85.085 295 35 7 2835 3122 595996559 595996851 4.010000e-75 292.0
18 TraesCS6B01G416600 chr7D 84.647 1218 155 13 1252 2448 426847477 426848683 0.000000e+00 1184.0
19 TraesCS6B01G416600 chr7D 84.227 317 33 7 3722 4023 543211765 543212079 4.010000e-75 292.0
20 TraesCS6B01G416600 chr7D 83.729 295 38 7 2833 3122 564573305 564573016 1.880000e-68 270.0
21 TraesCS6B01G416600 chr7D 78.500 200 32 9 235 429 508600673 508600866 2.000000e-23 121.0
22 TraesCS6B01G416600 chr7D 86.916 107 12 2 521 626 602038399 602038294 7.200000e-23 119.0
23 TraesCS6B01G416600 chr7B 84.319 1218 159 13 1252 2448 444475456 444476662 0.000000e+00 1162.0
24 TraesCS6B01G416600 chr7B 75.000 256 48 13 242 496 587455412 587455172 2.020000e-18 104.0
25 TraesCS6B01G416600 chr7B 74.113 282 56 13 242 522 587494680 587494415 2.610000e-17 100.0
26 TraesCS6B01G416600 chr7B 73.665 281 57 13 242 521 587552328 587552064 4.360000e-15 93.5
27 TraesCS6B01G416600 chr7B 73.404 282 55 16 242 521 587428504 587428241 2.030000e-13 87.9
28 TraesCS6B01G416600 chr4B 84.821 560 61 14 3517 4060 270797565 270797014 3.600000e-150 542.0
29 TraesCS6B01G416600 chr4B 84.712 556 61 11 3517 4056 270611541 270610994 6.030000e-148 534.0
30 TraesCS6B01G416600 chr4B 87.956 274 31 1 3558 3829 581077569 581077296 5.110000e-84 322.0
31 TraesCS6B01G416600 chr4B 81.452 372 43 7 2513 2863 270806347 270805981 8.670000e-72 281.0
32 TraesCS6B01G416600 chr2B 88.686 274 29 1 3558 3829 572164931 572165204 2.360000e-87 333.0
33 TraesCS6B01G416600 chr2B 83.019 159 24 2 521 676 644551305 644551463 1.540000e-29 141.0
34 TraesCS6B01G416600 chr4A 84.906 318 32 8 3719 4022 472852979 472853294 1.430000e-79 307.0
35 TraesCS6B01G416600 chr4A 86.628 172 14 5 3795 3959 738880955 738880786 9.050000e-42 182.0
36 TraesCS6B01G416600 chr2A 83.108 296 43 6 2833 3122 745303548 745303254 3.140000e-66 263.0
37 TraesCS6B01G416600 chr2A 77.528 178 31 6 243 416 70701104 70701276 9.380000e-17 99.0
38 TraesCS6B01G416600 chr3B 82.828 297 41 8 2833 3122 17882827 17882534 1.460000e-64 257.0
39 TraesCS6B01G416600 chr3B 82.492 297 42 8 2833 3122 17898796 17898503 6.800000e-63 252.0
40 TraesCS6B01G416600 chr3B 87.838 74 9 0 521 594 188442082 188442155 2.030000e-13 87.9
41 TraesCS6B01G416600 chr2D 86.598 194 23 2 334 524 561232501 561232308 1.150000e-50 211.0
42 TraesCS6B01G416600 chr2D 83.030 165 21 6 521 683 37248413 37248254 4.270000e-30 143.0
43 TraesCS6B01G416600 chr2D 80.892 157 26 4 521 676 423607421 423607268 2.000000e-23 121.0
44 TraesCS6B01G416600 chr2D 79.459 185 25 4 2710 2883 114515947 114515765 7.200000e-23 119.0
45 TraesCS6B01G416600 chr2D 76.552 145 25 6 521 665 485585031 485584896 2.040000e-08 71.3
46 TraesCS6B01G416600 chr3A 79.930 284 49 6 244 524 574520728 574521006 6.950000e-48 202.0
47 TraesCS6B01G416600 chr5B 86.047 172 15 5 3795 3959 321630006 321630175 4.210000e-40 176.0
48 TraesCS6B01G416600 chr1D 78.000 200 30 10 235 429 170218361 170218171 3.350000e-21 113.0
49 TraesCS6B01G416600 chr4D 88.571 70 7 1 1604 1673 98934839 98934907 2.630000e-12 84.2
50 TraesCS6B01G416600 chr1B 76.282 156 32 5 521 674 503280821 503280973 1.220000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G416600 chr6B 688778152 688782250 4098 True 7570.0 7570 100.000000 1 4099 1 chr6B.!!$R2 4098
1 TraesCS6B01G416600 chr6D 453167163 453173041 5878 False 682.0 1666 89.405167 5 4099 6 chr6D.!!$F1 4094
2 TraesCS6B01G416600 chr6A 599164067 599168034 3967 False 755.6 1600 89.325600 17 3827 5 chr6A.!!$F1 3810
3 TraesCS6B01G416600 chr7A 506130584 506131790 1206 True 1201.0 1201 84.893000 1252 2448 1 chr7A.!!$R1 1196
4 TraesCS6B01G416600 chr7D 426847477 426848683 1206 False 1184.0 1184 84.647000 1252 2448 1 chr7D.!!$F1 1196
5 TraesCS6B01G416600 chr7B 444475456 444476662 1206 False 1162.0 1162 84.319000 1252 2448 1 chr7B.!!$F1 1196
6 TraesCS6B01G416600 chr4B 270797014 270797565 551 True 542.0 542 84.821000 3517 4060 1 chr4B.!!$R2 543
7 TraesCS6B01G416600 chr4B 270610994 270611541 547 True 534.0 534 84.712000 3517 4056 1 chr4B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 695 0.107361 TCATCATGGGTGCAGCTGAG 60.107 55.0 20.43 5.80 0.00 3.35 F
674 711 0.749091 TGAGCCTGGGCAATGAATCG 60.749 55.0 14.39 0.00 44.88 3.34 F
1504 3741 0.454196 GGAGAGCTCAGAGGTCGAAC 59.546 60.0 21.33 16.43 46.62 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 3722 0.454196 GTTCGACCTCTGAGCTCTCC 59.546 60.0 16.19 0.00 0.0 3.71 R
2043 4389 0.537143 ACCATTTCTTGAGGCGCACA 60.537 50.0 10.83 6.01 0.0 4.57 R
3295 5995 0.373716 GGAAGATAAACTGTGCCGCG 59.626 55.0 0.00 0.00 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 6.153000 TGGCAACTTTTTAAAACAGTAGTGGA 59.847 34.615 8.47 0.00 37.61 4.02
109 110 6.902224 AAACAGTAGTGGAAAATTTGCAAC 57.098 33.333 0.51 0.00 30.97 4.17
136 140 4.358851 TGTTGTATGTTGCTGCTTTCAAC 58.641 39.130 0.00 8.51 42.91 3.18
181 185 7.687445 TGTGAATACATCGAAATCACAAGATG 58.313 34.615 15.22 3.12 45.17 2.90
189 193 3.730061 CGAAATCACAAGATGCTTGCTCC 60.730 47.826 7.06 0.00 33.90 4.70
195 199 3.693085 CACAAGATGCTTGCTCCTACAAT 59.307 43.478 7.06 0.00 0.00 2.71
241 245 9.059260 TCTGTACTTTTTAGATGGGTGTTTTAC 57.941 33.333 0.00 0.00 0.00 2.01
242 246 7.863666 TGTACTTTTTAGATGGGTGTTTTACG 58.136 34.615 0.00 0.00 0.00 3.18
243 247 7.714377 TGTACTTTTTAGATGGGTGTTTTACGA 59.286 33.333 0.00 0.00 0.00 3.43
244 248 7.571080 ACTTTTTAGATGGGTGTTTTACGAA 57.429 32.000 0.00 0.00 0.00 3.85
245 249 8.173542 ACTTTTTAGATGGGTGTTTTACGAAT 57.826 30.769 0.00 0.00 0.00 3.34
246 250 9.287373 ACTTTTTAGATGGGTGTTTTACGAATA 57.713 29.630 0.00 0.00 0.00 1.75
249 253 8.441312 TTTAGATGGGTGTTTTACGAATATCC 57.559 34.615 0.00 0.00 0.00 2.59
250 254 5.996644 AGATGGGTGTTTTACGAATATCCA 58.003 37.500 0.00 0.00 0.00 3.41
251 255 6.601332 AGATGGGTGTTTTACGAATATCCAT 58.399 36.000 0.65 0.65 35.46 3.41
252 256 7.060421 AGATGGGTGTTTTACGAATATCCATT 58.940 34.615 2.48 0.00 33.24 3.16
253 257 7.559897 AGATGGGTGTTTTACGAATATCCATTT 59.440 33.333 2.48 0.00 33.24 2.32
254 258 6.857956 TGGGTGTTTTACGAATATCCATTTG 58.142 36.000 0.00 0.00 0.00 2.32
255 259 6.434652 TGGGTGTTTTACGAATATCCATTTGT 59.565 34.615 0.00 0.00 41.00 2.83
256 260 6.750039 GGGTGTTTTACGAATATCCATTTGTG 59.250 38.462 0.00 0.00 38.87 3.33
257 261 7.362229 GGGTGTTTTACGAATATCCATTTGTGA 60.362 37.037 0.00 0.00 38.87 3.58
258 262 8.024285 GGTGTTTTACGAATATCCATTTGTGAA 58.976 33.333 0.00 0.00 38.87 3.18
259 263 8.846607 GTGTTTTACGAATATCCATTTGTGAAC 58.153 33.333 0.00 6.32 38.87 3.18
260 264 8.024285 TGTTTTACGAATATCCATTTGTGAACC 58.976 33.333 0.00 0.00 38.87 3.62
261 265 7.689446 TTTACGAATATCCATTTGTGAACCA 57.311 32.000 0.00 0.00 38.87 3.67
262 266 7.689446 TTACGAATATCCATTTGTGAACCAA 57.311 32.000 0.00 0.00 38.87 3.67
263 267 6.194796 ACGAATATCCATTTGTGAACCAAG 57.805 37.500 0.00 0.00 37.38 3.61
264 268 5.125417 ACGAATATCCATTTGTGAACCAAGG 59.875 40.000 0.00 0.00 37.38 3.61
265 269 5.343307 AATATCCATTTGTGAACCAAGGC 57.657 39.130 0.00 0.00 33.75 4.35
266 270 2.380064 TCCATTTGTGAACCAAGGCT 57.620 45.000 0.00 0.00 33.75 4.58
267 271 2.238521 TCCATTTGTGAACCAAGGCTC 58.761 47.619 0.00 0.00 33.75 4.70
268 272 1.962807 CCATTTGTGAACCAAGGCTCA 59.037 47.619 0.00 0.00 33.75 4.26
269 273 2.564062 CCATTTGTGAACCAAGGCTCAT 59.436 45.455 0.00 0.00 33.75 2.90
270 274 3.367703 CCATTTGTGAACCAAGGCTCATC 60.368 47.826 0.00 0.00 33.75 2.92
271 275 2.957402 TTGTGAACCAAGGCTCATCT 57.043 45.000 0.00 0.00 0.00 2.90
272 276 2.189594 TGTGAACCAAGGCTCATCTG 57.810 50.000 0.00 0.00 0.00 2.90
273 277 0.807496 GTGAACCAAGGCTCATCTGC 59.193 55.000 0.00 0.00 0.00 4.26
274 278 0.401356 TGAACCAAGGCTCATCTGCA 59.599 50.000 0.00 0.00 34.04 4.41
275 279 0.807496 GAACCAAGGCTCATCTGCAC 59.193 55.000 0.00 0.00 34.04 4.57
276 280 0.610232 AACCAAGGCTCATCTGCACC 60.610 55.000 0.00 0.00 34.04 5.01
277 281 1.751927 CCAAGGCTCATCTGCACCC 60.752 63.158 0.00 0.00 34.04 4.61
278 282 2.110967 CAAGGCTCATCTGCACCCG 61.111 63.158 0.00 0.00 34.04 5.28
279 283 3.335356 AAGGCTCATCTGCACCCGG 62.335 63.158 0.00 0.00 34.04 5.73
280 284 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
281 285 2.045926 GCTCATCTGCACCCGGTT 60.046 61.111 0.00 0.00 0.00 4.44
282 286 1.220749 GCTCATCTGCACCCGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
283 287 0.392461 GCTCATCTGCACCCGGTTAA 60.392 55.000 0.00 0.00 0.00 2.01
284 288 1.656652 CTCATCTGCACCCGGTTAAG 58.343 55.000 0.00 0.00 0.00 1.85
285 289 1.207089 CTCATCTGCACCCGGTTAAGA 59.793 52.381 0.00 0.00 0.00 2.10
286 290 1.626321 TCATCTGCACCCGGTTAAGAA 59.374 47.619 0.00 0.00 0.00 2.52
287 291 2.039216 TCATCTGCACCCGGTTAAGAAA 59.961 45.455 0.00 0.00 0.00 2.52
288 292 2.642154 TCTGCACCCGGTTAAGAAAA 57.358 45.000 0.00 0.00 0.00 2.29
289 293 2.933573 TCTGCACCCGGTTAAGAAAAA 58.066 42.857 0.00 0.00 0.00 1.94
364 368 9.683069 GTATGGAAAATAATTTAGTGCATGAGG 57.317 33.333 0.00 0.00 0.00 3.86
365 369 6.572519 TGGAAAATAATTTAGTGCATGAGGC 58.427 36.000 0.00 0.00 45.13 4.70
374 378 3.503363 GCATGAGGCGCACTCCAC 61.503 66.667 19.09 8.19 46.01 4.02
375 379 2.267006 CATGAGGCGCACTCCACT 59.733 61.111 19.09 2.56 46.01 4.00
376 380 1.376424 CATGAGGCGCACTCCACTT 60.376 57.895 19.09 3.72 46.01 3.16
377 381 0.957395 CATGAGGCGCACTCCACTTT 60.957 55.000 19.09 1.79 46.01 2.66
378 382 0.250901 ATGAGGCGCACTCCACTTTT 60.251 50.000 19.09 0.42 46.01 2.27
379 383 0.884704 TGAGGCGCACTCCACTTTTC 60.885 55.000 19.09 0.00 46.01 2.29
380 384 0.884704 GAGGCGCACTCCACTTTTCA 60.885 55.000 10.83 0.00 40.49 2.69
381 385 0.886490 AGGCGCACTCCACTTTTCAG 60.886 55.000 10.83 0.00 0.00 3.02
382 386 0.884704 GGCGCACTCCACTTTTCAGA 60.885 55.000 10.83 0.00 0.00 3.27
383 387 1.160137 GCGCACTCCACTTTTCAGAT 58.840 50.000 0.30 0.00 0.00 2.90
384 388 1.129437 GCGCACTCCACTTTTCAGATC 59.871 52.381 0.30 0.00 0.00 2.75
385 389 2.416747 CGCACTCCACTTTTCAGATCA 58.583 47.619 0.00 0.00 0.00 2.92
386 390 3.005554 CGCACTCCACTTTTCAGATCAT 58.994 45.455 0.00 0.00 0.00 2.45
387 391 3.438087 CGCACTCCACTTTTCAGATCATT 59.562 43.478 0.00 0.00 0.00 2.57
388 392 4.083110 CGCACTCCACTTTTCAGATCATTT 60.083 41.667 0.00 0.00 0.00 2.32
389 393 5.159209 GCACTCCACTTTTCAGATCATTTG 58.841 41.667 0.00 0.00 0.00 2.32
390 394 5.706916 CACTCCACTTTTCAGATCATTTGG 58.293 41.667 0.00 0.00 0.00 3.28
391 395 5.474532 CACTCCACTTTTCAGATCATTTGGA 59.525 40.000 0.00 0.00 0.00 3.53
392 396 5.474876 ACTCCACTTTTCAGATCATTTGGAC 59.525 40.000 0.00 0.00 0.00 4.02
393 397 5.384336 TCCACTTTTCAGATCATTTGGACA 58.616 37.500 0.00 0.00 0.00 4.02
394 398 6.012113 TCCACTTTTCAGATCATTTGGACAT 58.988 36.000 0.00 0.00 0.00 3.06
395 399 7.174413 TCCACTTTTCAGATCATTTGGACATA 58.826 34.615 0.00 0.00 0.00 2.29
396 400 7.835682 TCCACTTTTCAGATCATTTGGACATAT 59.164 33.333 0.00 0.00 0.00 1.78
397 401 7.919091 CCACTTTTCAGATCATTTGGACATATG 59.081 37.037 0.00 0.00 0.00 1.78
398 402 8.680001 CACTTTTCAGATCATTTGGACATATGA 58.320 33.333 10.38 7.68 34.25 2.15
399 403 8.900781 ACTTTTCAGATCATTTGGACATATGAG 58.099 33.333 10.38 0.00 33.48 2.90
400 404 8.812513 TTTTCAGATCATTTGGACATATGAGT 57.187 30.769 10.38 0.00 33.48 3.41
401 405 9.904198 TTTTCAGATCATTTGGACATATGAGTA 57.096 29.630 10.38 0.00 33.48 2.59
402 406 9.551734 TTTCAGATCATTTGGACATATGAGTAG 57.448 33.333 10.38 4.23 33.48 2.57
403 407 8.255111 TCAGATCATTTGGACATATGAGTAGT 57.745 34.615 10.38 0.00 33.48 2.73
404 408 8.708378 TCAGATCATTTGGACATATGAGTAGTT 58.292 33.333 10.38 0.00 33.48 2.24
405 409 8.986847 CAGATCATTTGGACATATGAGTAGTTC 58.013 37.037 10.38 0.00 33.48 3.01
406 410 8.932610 AGATCATTTGGACATATGAGTAGTTCT 58.067 33.333 10.38 6.03 33.48 3.01
407 411 9.202273 GATCATTTGGACATATGAGTAGTTCTC 57.798 37.037 10.38 0.00 43.03 2.87
422 426 8.602612 GAGTAGTTCTCAACAAAAAGACAAAC 57.397 34.615 0.00 0.00 42.34 2.93
423 427 8.336801 AGTAGTTCTCAACAAAAAGACAAACT 57.663 30.769 0.00 0.00 0.00 2.66
424 428 8.237267 AGTAGTTCTCAACAAAAAGACAAACTG 58.763 33.333 0.00 0.00 0.00 3.16
425 429 6.389906 AGTTCTCAACAAAAAGACAAACTGG 58.610 36.000 0.00 0.00 0.00 4.00
426 430 5.323371 TCTCAACAAAAAGACAAACTGGG 57.677 39.130 0.00 0.00 0.00 4.45
427 431 4.770010 TCTCAACAAAAAGACAAACTGGGT 59.230 37.500 0.00 0.00 0.00 4.51
428 432 5.066968 TCAACAAAAAGACAAACTGGGTC 57.933 39.130 0.00 0.00 35.50 4.46
429 433 4.524714 TCAACAAAAAGACAAACTGGGTCA 59.475 37.500 0.00 0.00 37.74 4.02
430 434 4.718940 ACAAAAAGACAAACTGGGTCAG 57.281 40.909 0.00 0.00 37.74 3.51
431 435 4.340617 ACAAAAAGACAAACTGGGTCAGA 58.659 39.130 1.59 0.00 37.74 3.27
432 436 4.770010 ACAAAAAGACAAACTGGGTCAGAA 59.230 37.500 1.59 0.00 37.74 3.02
433 437 4.983671 AAAAGACAAACTGGGTCAGAAC 57.016 40.909 1.59 0.00 37.74 3.01
434 438 3.644966 AAGACAAACTGGGTCAGAACA 57.355 42.857 1.59 0.00 37.74 3.18
435 439 3.644966 AGACAAACTGGGTCAGAACAA 57.355 42.857 1.59 0.00 37.74 2.83
436 440 4.170468 AGACAAACTGGGTCAGAACAAT 57.830 40.909 1.59 0.00 37.74 2.71
437 441 5.304686 AGACAAACTGGGTCAGAACAATA 57.695 39.130 1.59 0.00 37.74 1.90
438 442 5.063880 AGACAAACTGGGTCAGAACAATAC 58.936 41.667 1.59 0.00 37.74 1.89
439 443 4.787551 ACAAACTGGGTCAGAACAATACA 58.212 39.130 1.59 0.00 35.18 2.29
440 444 5.385198 ACAAACTGGGTCAGAACAATACAT 58.615 37.500 1.59 0.00 35.18 2.29
441 445 5.241506 ACAAACTGGGTCAGAACAATACATG 59.758 40.000 1.59 0.00 35.18 3.21
442 446 4.908601 ACTGGGTCAGAACAATACATGA 57.091 40.909 0.00 0.00 35.18 3.07
443 447 5.241403 ACTGGGTCAGAACAATACATGAA 57.759 39.130 0.00 0.00 35.18 2.57
444 448 5.003804 ACTGGGTCAGAACAATACATGAAC 58.996 41.667 0.00 0.00 35.18 3.18
445 449 4.979335 TGGGTCAGAACAATACATGAACA 58.021 39.130 0.00 0.00 30.81 3.18
446 450 5.569355 TGGGTCAGAACAATACATGAACAT 58.431 37.500 0.00 0.00 30.81 2.71
447 451 6.009589 TGGGTCAGAACAATACATGAACATT 58.990 36.000 0.00 0.00 30.81 2.71
448 452 7.171653 TGGGTCAGAACAATACATGAACATTA 58.828 34.615 0.00 0.00 30.81 1.90
449 453 7.667635 TGGGTCAGAACAATACATGAACATTAA 59.332 33.333 0.00 0.00 30.81 1.40
450 454 8.686334 GGGTCAGAACAATACATGAACATTAAT 58.314 33.333 0.00 0.00 30.81 1.40
479 483 8.989653 TTTCACAGACCGTAAATTTTTCTTTT 57.010 26.923 0.00 0.00 0.00 2.27
500 504 5.679734 TTTTGCTGAGAGCTACTCTTTTG 57.320 39.130 12.45 0.00 41.35 2.44
501 505 4.342862 TTGCTGAGAGCTACTCTTTTGT 57.657 40.909 12.45 0.00 41.35 2.83
502 506 3.919216 TGCTGAGAGCTACTCTTTTGTC 58.081 45.455 12.45 0.00 41.35 3.18
503 507 3.258228 GCTGAGAGCTACTCTTTTGTCC 58.742 50.000 12.45 0.00 41.35 4.02
504 508 3.306364 GCTGAGAGCTACTCTTTTGTCCA 60.306 47.826 12.45 0.00 41.35 4.02
505 509 4.800914 GCTGAGAGCTACTCTTTTGTCCAA 60.801 45.833 12.45 0.00 41.35 3.53
506 510 5.290493 TGAGAGCTACTCTTTTGTCCAAA 57.710 39.130 12.45 0.00 41.35 3.28
507 511 5.869579 TGAGAGCTACTCTTTTGTCCAAAT 58.130 37.500 12.45 0.00 41.35 2.32
511 515 6.597280 AGAGCTACTCTTTTGTCCAAATGATC 59.403 38.462 8.30 4.40 37.60 2.92
512 516 6.479884 AGCTACTCTTTTGTCCAAATGATCT 58.520 36.000 8.30 2.02 35.06 2.75
513 517 7.624549 AGCTACTCTTTTGTCCAAATGATCTA 58.375 34.615 8.30 2.81 35.06 1.98
523 527 8.761575 TTGTCCAAATGATCTAAAATTTGAGC 57.238 30.769 14.61 9.05 43.41 4.26
524 528 8.125978 TGTCCAAATGATCTAAAATTTGAGCT 57.874 30.769 14.61 0.00 43.41 4.09
526 530 9.508567 GTCCAAATGATCTAAAATTTGAGCTAC 57.491 33.333 14.61 6.55 43.41 3.58
527 531 9.466497 TCCAAATGATCTAAAATTTGAGCTACT 57.534 29.630 14.61 0.00 43.41 2.57
528 532 9.727627 CCAAATGATCTAAAATTTGAGCTACTC 57.272 33.333 14.61 0.00 43.41 2.59
531 535 9.678260 AATGATCTAAAATTTGAGCTACTCAGT 57.322 29.630 0.00 0.00 41.75 3.41
532 536 9.678260 ATGATCTAAAATTTGAGCTACTCAGTT 57.322 29.630 0.00 0.00 41.75 3.16
533 537 8.939929 TGATCTAAAATTTGAGCTACTCAGTTG 58.060 33.333 0.00 0.00 41.75 3.16
534 538 8.854614 ATCTAAAATTTGAGCTACTCAGTTGT 57.145 30.769 0.00 0.00 41.75 3.32
535 539 8.311650 TCTAAAATTTGAGCTACTCAGTTGTC 57.688 34.615 0.00 0.00 41.75 3.18
539 543 4.415881 TTGAGCTACTCAGTTGTCCAAA 57.584 40.909 0.00 0.00 41.75 3.28
540 544 4.623932 TGAGCTACTCAGTTGTCCAAAT 57.376 40.909 0.00 0.00 35.39 2.32
541 545 4.318332 TGAGCTACTCAGTTGTCCAAATG 58.682 43.478 1.25 1.25 35.39 2.32
542 546 4.040339 TGAGCTACTCAGTTGTCCAAATGA 59.960 41.667 9.49 9.49 42.21 2.57
543 547 5.171339 AGCTACTCAGTTGTCCAAATGAT 57.829 39.130 10.20 4.73 43.23 2.45
544 548 5.181748 AGCTACTCAGTTGTCCAAATGATC 58.818 41.667 10.20 2.23 43.23 2.92
545 549 5.046014 AGCTACTCAGTTGTCCAAATGATCT 60.046 40.000 10.20 2.80 43.23 2.75
547 551 6.818644 GCTACTCAGTTGTCCAAATGATCTAA 59.181 38.462 10.20 0.00 43.23 2.10
548 552 7.334421 GCTACTCAGTTGTCCAAATGATCTAAA 59.666 37.037 10.20 0.00 43.23 1.85
550 554 8.641498 ACTCAGTTGTCCAAATGATCTAAAAT 57.359 30.769 10.20 0.00 43.23 1.82
551 555 9.082313 ACTCAGTTGTCCAAATGATCTAAAATT 57.918 29.630 10.20 0.00 43.23 1.82
552 556 9.918630 CTCAGTTGTCCAAATGATCTAAAATTT 57.081 29.630 10.20 0.00 43.23 1.82
553 557 9.695526 TCAGTTGTCCAAATGATCTAAAATTTG 57.304 29.630 6.10 8.54 40.00 2.32
559 563 6.264909 CAAATGATCTAAAATTTGGAGCGC 57.735 37.500 0.00 0.00 39.19 5.92
560 564 5.581126 AATGATCTAAAATTTGGAGCGCA 57.419 34.783 11.47 0.00 28.26 6.09
561 565 4.355543 TGATCTAAAATTTGGAGCGCAC 57.644 40.909 11.47 1.97 28.26 5.34
562 566 3.128589 TGATCTAAAATTTGGAGCGCACC 59.871 43.478 17.78 17.78 28.26 5.01
564 568 2.747446 TCTAAAATTTGGAGCGCACCTC 59.253 45.455 24.52 5.97 39.98 3.85
578 582 3.904136 GCACCTCATGCGCTAAATTAT 57.096 42.857 9.73 0.00 46.55 1.28
579 583 3.814945 GCACCTCATGCGCTAAATTATC 58.185 45.455 9.73 0.00 46.55 1.75
581 585 4.023707 GCACCTCATGCGCTAAATTATCTT 60.024 41.667 9.73 0.00 46.55 2.40
583 587 6.138761 CACCTCATGCGCTAAATTATCTTTC 58.861 40.000 9.73 0.00 0.00 2.62
584 588 5.822519 ACCTCATGCGCTAAATTATCTTTCA 59.177 36.000 9.73 0.00 0.00 2.69
585 589 6.488006 ACCTCATGCGCTAAATTATCTTTCAT 59.512 34.615 9.73 0.00 0.00 2.57
586 590 7.661437 ACCTCATGCGCTAAATTATCTTTCATA 59.339 33.333 9.73 0.00 0.00 2.15
587 591 7.959651 CCTCATGCGCTAAATTATCTTTCATAC 59.040 37.037 9.73 0.00 0.00 2.39
590 594 9.449550 CATGCGCTAAATTATCTTTCATACAAA 57.550 29.630 9.73 0.00 0.00 2.83
654 691 4.389890 TTTTATTCATCATGGGTGCAGC 57.610 40.909 7.55 7.55 0.00 5.25
655 692 3.301794 TTATTCATCATGGGTGCAGCT 57.698 42.857 16.65 0.00 0.00 4.24
656 693 1.399714 ATTCATCATGGGTGCAGCTG 58.600 50.000 16.65 10.11 0.00 4.24
658 695 0.107361 TCATCATGGGTGCAGCTGAG 60.107 55.000 20.43 5.80 0.00 3.35
660 697 2.905935 ATCATGGGTGCAGCTGAGCC 62.906 60.000 20.43 20.60 0.00 4.70
661 698 3.336568 ATGGGTGCAGCTGAGCCT 61.337 61.111 20.43 8.77 31.85 4.58
662 699 3.640257 ATGGGTGCAGCTGAGCCTG 62.640 63.158 20.43 0.00 35.93 4.85
668 705 2.044252 CAGCTGAGCCTGGGCAAT 60.044 61.111 8.42 0.00 44.88 3.56
669 706 2.044252 AGCTGAGCCTGGGCAATG 60.044 61.111 14.39 4.19 44.88 2.82
671 708 1.679977 GCTGAGCCTGGGCAATGAA 60.680 57.895 14.39 0.00 44.88 2.57
672 709 1.041447 GCTGAGCCTGGGCAATGAAT 61.041 55.000 14.39 0.00 44.88 2.57
673 710 1.030457 CTGAGCCTGGGCAATGAATC 58.970 55.000 14.39 2.15 44.88 2.52
674 711 0.749091 TGAGCCTGGGCAATGAATCG 60.749 55.000 14.39 0.00 44.88 3.34
675 712 2.068277 GAGCCTGGGCAATGAATCGC 62.068 60.000 14.39 0.00 44.88 4.58
682 719 1.643832 GCAATGAATCGCCTCGTCC 59.356 57.895 0.00 0.00 0.00 4.79
683 720 1.927210 CAATGAATCGCCTCGTCCG 59.073 57.895 0.00 0.00 0.00 4.79
684 721 1.227263 AATGAATCGCCTCGTCCGG 60.227 57.895 0.00 0.00 0.00 5.14
685 722 3.792053 ATGAATCGCCTCGTCCGGC 62.792 63.158 0.00 3.59 46.68 6.13
691 728 2.432972 GCCTCGTCCGGCGTTTTA 60.433 61.111 16.00 0.00 40.79 1.52
700 741 3.241868 CGTCCGGCGTTTTAAGACTATTG 60.242 47.826 6.01 0.00 35.54 1.90
702 743 3.004862 CCGGCGTTTTAAGACTATTGGT 58.995 45.455 6.01 0.00 0.00 3.67
846 987 7.557719 AGGTCATGGGATGTCTTTATTACTTTG 59.442 37.037 0.00 0.00 0.00 2.77
848 989 6.321181 TCATGGGATGTCTTTATTACTTTGCC 59.679 38.462 0.00 0.00 0.00 4.52
849 990 5.826643 TGGGATGTCTTTATTACTTTGCCT 58.173 37.500 0.00 0.00 0.00 4.75
922 1219 1.957695 GCAACAGCAGCAAAAGCCC 60.958 57.895 0.00 0.00 0.00 5.19
923 1220 1.301165 CAACAGCAGCAAAAGCCCC 60.301 57.895 0.00 0.00 0.00 5.80
924 1221 2.510551 AACAGCAGCAAAAGCCCCC 61.511 57.895 0.00 0.00 0.00 5.40
1039 3235 1.098050 GCAACACAGGGATAAGCCAG 58.902 55.000 0.00 0.00 38.95 4.85
1042 3238 1.372501 ACACAGGGATAAGCCAGGTT 58.627 50.000 0.00 0.00 38.95 3.50
1043 3239 1.282157 ACACAGGGATAAGCCAGGTTC 59.718 52.381 0.00 0.00 38.95 3.62
1059 3255 1.834378 TTCCCCAAATTGCCGCACA 60.834 52.632 0.00 0.00 0.00 4.57
1078 3274 4.818314 AAAAACCCCAACCCAGCA 57.182 50.000 0.00 0.00 0.00 4.41
1080 3276 1.681486 AAAAACCCCAACCCAGCACG 61.681 55.000 0.00 0.00 0.00 5.34
1207 3438 2.034066 CCAAGGCCAAGGCGAAGA 59.966 61.111 5.01 0.00 43.06 2.87
1238 3469 2.359975 CAAGGCCAAGTCCGGACC 60.360 66.667 30.82 15.61 32.64 4.46
1239 3470 4.016706 AAGGCCAAGTCCGGACCG 62.017 66.667 30.82 21.51 32.64 4.79
1328 3565 1.739562 GCGCGGATGAGATGGATCC 60.740 63.158 8.83 4.20 36.73 3.36
1500 3737 2.781158 GCCGGAGAGCTCAGAGGTC 61.781 68.421 20.27 20.27 42.72 3.85
1504 3741 0.454196 GGAGAGCTCAGAGGTCGAAC 59.546 60.000 21.33 16.43 46.62 3.95
1596 3833 2.158957 GCAGACCTTACCATCATCGGAA 60.159 50.000 0.00 0.00 0.00 4.30
1623 3860 0.464373 CTGATGTGGCCGGTTATGCT 60.464 55.000 1.90 0.00 0.00 3.79
1680 3917 4.290711 TCATCTTGATGCAGTTCTCCAA 57.709 40.909 5.78 0.00 0.00 3.53
1692 3929 2.742710 TTCTCCAACTGCGACCGTCG 62.743 60.000 16.72 16.72 43.89 5.12
1713 3950 0.461870 TGTCGCATCTCATTTCCGGG 60.462 55.000 0.00 0.00 0.00 5.73
1829 4078 5.705609 TCCAACAAGGACTCAATTAAAGC 57.294 39.130 0.00 0.00 43.07 3.51
1833 4082 4.469657 ACAAGGACTCAATTAAAGCACCA 58.530 39.130 0.00 0.00 0.00 4.17
1942 4288 2.223641 CCCATGGATTTCACAATGAGCG 60.224 50.000 15.22 0.00 0.00 5.03
1980 4326 1.852157 ATTGTGTCCTGGAGGGCCA 60.852 57.895 6.18 0.00 43.47 5.36
2011 4357 5.084722 GCAATCATATTAACAGATGCGAGC 58.915 41.667 0.00 0.00 0.00 5.03
2030 4376 2.554032 AGCTGTTACGCAAGATGCTTTT 59.446 40.909 0.43 0.00 42.25 2.27
2031 4377 2.658325 GCTGTTACGCAAGATGCTTTTG 59.342 45.455 0.43 0.00 42.25 2.44
2043 4389 1.969862 GCTTTTGCTGCCACTGGAT 59.030 52.632 0.00 0.00 43.35 3.41
2076 4422 4.315803 AGAAATGGTTTACTGAGGTGTCG 58.684 43.478 0.00 0.00 0.00 4.35
2088 4434 2.248431 GTGTCGCAAGTGAACCGC 59.752 61.111 0.00 0.00 39.48 5.68
2102 4448 2.742053 TGAACCGCTTTGATGCTCTAAC 59.258 45.455 0.00 0.00 0.00 2.34
2153 4499 4.764308 AGACCTTCTGAAAATTCTTCCAGC 59.236 41.667 0.00 0.00 0.00 4.85
2276 4622 0.831307 GGGGAGTCCATACCTGTGAC 59.169 60.000 12.30 0.00 35.00 3.67
2424 4770 7.289317 AGACGTTATTCCCATATAGTCAAGGAA 59.711 37.037 0.00 0.00 40.70 3.36
2468 4814 3.679917 CGCCTAAGAGCCTGAAGAAATGA 60.680 47.826 0.00 0.00 0.00 2.57
2472 4818 5.353678 CCTAAGAGCCTGAAGAAATGACTTG 59.646 44.000 0.00 0.00 0.00 3.16
2474 4820 2.163211 GAGCCTGAAGAAATGACTTGCC 59.837 50.000 0.00 0.00 0.00 4.52
2562 4908 1.065926 TGCAGTGGTCCTAGATTGCAG 60.066 52.381 0.00 0.00 36.71 4.41
2571 4917 2.042464 CCTAGATTGCAGCCTGAGGTA 58.958 52.381 0.00 0.00 0.00 3.08
2576 4922 0.255890 TTGCAGCCTGAGGTAATCCC 59.744 55.000 0.00 0.00 0.00 3.85
2673 5019 1.002773 GTGGGTGGACGGTATTCTTGT 59.997 52.381 0.00 0.00 0.00 3.16
2720 5073 8.679100 TGAATACAACCCCGTTTCATTAAATAG 58.321 33.333 0.00 0.00 0.00 1.73
2752 5105 5.615289 AGCCCTTCTATTTGTGCTATACTG 58.385 41.667 0.00 0.00 0.00 2.74
2772 5125 6.991485 ACTGCTTTACGAAACAATTGATTG 57.009 33.333 13.59 7.04 43.26 2.67
2795 5159 4.439289 GCCTCTGATTTATGGTCTTTGTGC 60.439 45.833 0.00 0.00 0.00 4.57
2870 5234 6.642540 GGTCAAAAGAAAGTAAATCAAGGCAG 59.357 38.462 0.00 0.00 0.00 4.85
2872 5236 7.706607 GTCAAAAGAAAGTAAATCAAGGCAGTT 59.293 33.333 0.00 0.00 0.00 3.16
2922 5456 6.049344 CTCTGCTTTGAACCCAGAGTTTGG 62.049 50.000 11.19 0.00 44.63 3.28
2950 5641 6.767902 CCATACATTGCAGTAGAACTATTGGT 59.232 38.462 6.51 0.18 0.00 3.67
2957 5648 8.856153 TTGCAGTAGAACTATTGGTTGATTAA 57.144 30.769 6.51 0.00 38.41 1.40
2988 5679 9.793259 AAGAAGACAGGACTTAATATTTGACAA 57.207 29.630 0.00 0.00 0.00 3.18
3143 5842 4.206375 TCAATCAAAGAGTTTGGCTGTCA 58.794 39.130 0.00 0.00 40.98 3.58
3150 5849 4.843220 AGAGTTTGGCTGTCAGATTTTG 57.157 40.909 3.32 0.00 0.00 2.44
3160 5859 5.393352 GGCTGTCAGATTTTGCATATTGACA 60.393 40.000 3.32 14.89 41.63 3.58
3175 5874 2.543777 TGACAGTAGGGAACTTGCAC 57.456 50.000 0.00 0.00 43.67 4.57
3185 5884 4.142038 AGGGAACTTGCACGAGTTTAATT 58.858 39.130 5.30 0.00 39.84 1.40
3186 5885 5.310451 AGGGAACTTGCACGAGTTTAATTA 58.690 37.500 5.30 0.00 39.84 1.40
3191 5890 9.221775 GGAACTTGCACGAGTTTAATTATTATG 57.778 33.333 5.30 0.00 39.84 1.90
3197 5896 8.609176 TGCACGAGTTTAATTATTATGAACTCC 58.391 33.333 17.13 9.03 41.80 3.85
3240 5940 4.973168 ACTGAAGCAATCTGTTGGAGTAA 58.027 39.130 0.00 0.00 36.92 2.24
3295 5995 0.102844 TTGCACAGCAGGAGTTTTGC 59.897 50.000 0.00 0.00 40.61 3.68
3305 6005 3.181169 GAGTTTTGCGCGGCACAGT 62.181 57.895 8.83 0.00 38.71 3.55
3307 6007 1.876263 GTTTTGCGCGGCACAGTTT 60.876 52.632 8.83 0.00 38.71 2.66
3355 6055 3.430497 TAGCCGCCCTCTCCCTCT 61.430 66.667 0.00 0.00 0.00 3.69
3424 6124 6.291532 CGAAAGCAGAGTAGATTCTCATTTCG 60.292 42.308 17.46 17.46 42.61 3.46
3456 6156 4.103357 GCACATGAGCAATGAATGAACTC 58.897 43.478 10.48 0.00 38.72 3.01
3464 6164 4.154918 AGCAATGAATGAACTCGGAAGAAC 59.845 41.667 0.00 0.00 41.32 3.01
3474 6175 3.090790 ACTCGGAAGAACTTCTACTCCC 58.909 50.000 13.14 0.00 41.32 4.30
3569 6276 5.049828 TGGTCAATGATGATGACGTGTATC 58.950 41.667 0.00 0.00 46.41 2.24
3573 6280 6.699204 GTCAATGATGATGACGTGTATCTTCT 59.301 38.462 18.20 8.06 37.98 2.85
3583 6290 7.273188 TGACGTGTATCTTCTTAATGAAACG 57.727 36.000 0.00 0.00 38.85 3.60
3599 6306 3.056107 TGAAACGAAGGACTGGAATCGAT 60.056 43.478 0.00 0.00 38.59 3.59
3615 6322 6.262273 TGGAATCGATAATTTCCTGGTTTAGC 59.738 38.462 14.85 0.00 0.00 3.09
3616 6323 6.262273 GGAATCGATAATTTCCTGGTTTAGCA 59.738 38.462 8.05 0.00 0.00 3.49
3648 6356 8.664211 TTAAATTATGCTCCGGTTTTTGTTTT 57.336 26.923 0.00 0.00 0.00 2.43
3659 6367 4.304110 GGTTTTTGTTTTCCGGATCTTCC 58.696 43.478 4.15 0.00 0.00 3.46
3710 6418 4.396166 CCTCTTGTGAAGTGTGTCAAAGTT 59.604 41.667 0.00 0.00 0.00 2.66
3749 6462 4.969359 AGGCTATATGTTGAGTAACCTGGT 59.031 41.667 0.00 0.00 35.92 4.00
3751 6464 6.787957 AGGCTATATGTTGAGTAACCTGGTAT 59.212 38.462 0.00 0.00 35.92 2.73
3790 6503 1.085091 CTGCATTGTCTCTCTGTGCC 58.915 55.000 0.00 0.00 35.03 5.01
3813 6526 0.104671 TGCCTGCCAAGTTTCTTTGC 59.895 50.000 0.00 0.00 0.00 3.68
3850 6563 6.756299 TGTGTTATTGCTATTTGAGATGCA 57.244 33.333 0.00 0.00 0.00 3.96
3869 6582 5.441718 TGCAATTCTCCTGTCCTTAGAAT 57.558 39.130 0.00 0.00 40.74 2.40
3870 6583 5.188434 TGCAATTCTCCTGTCCTTAGAATG 58.812 41.667 0.00 0.00 39.34 2.67
3871 6584 4.578105 GCAATTCTCCTGTCCTTAGAATGG 59.422 45.833 0.00 0.00 39.34 3.16
3872 6585 5.630069 GCAATTCTCCTGTCCTTAGAATGGA 60.630 44.000 0.00 0.00 39.34 3.41
3998 6722 4.701765 AGCACTTCAAGCTATGTAGGATG 58.298 43.478 0.00 0.00 41.32 3.51
4033 6758 6.441274 ACTTCAGTTGCACTTGTGATTAATG 58.559 36.000 4.79 0.00 0.00 1.90
4085 6810 1.448540 GGGAGATATGCCGGATGCG 60.449 63.158 5.05 0.00 45.60 4.73
4086 6811 1.448540 GGAGATATGCCGGATGCGG 60.449 63.158 22.84 22.84 45.60 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.721133 AAGTATGTTTTGGTCCCTTAAGAATT 57.279 30.769 3.36 0.00 0.00 2.17
1 2 8.721133 AAAGTATGTTTTGGTCCCTTAAGAAT 57.279 30.769 3.36 0.00 0.00 2.40
2 3 8.541899 AAAAGTATGTTTTGGTCCCTTAAGAA 57.458 30.769 3.36 0.00 0.00 2.52
3 4 8.002459 AGAAAAGTATGTTTTGGTCCCTTAAGA 58.998 33.333 3.36 0.00 0.00 2.10
85 86 7.102993 AGTTGCAAATTTTCCACTACTGTTTT 58.897 30.769 0.00 0.00 0.00 2.43
109 110 4.430137 AGCAGCAACATACAACATCAAG 57.570 40.909 0.00 0.00 0.00 3.02
136 140 0.239347 CAAGCCTTCACGCCTTCTTG 59.761 55.000 0.00 0.00 0.00 3.02
137 141 0.179018 ACAAGCCTTCACGCCTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
138 142 0.886490 CACAAGCCTTCACGCCTTCT 60.886 55.000 0.00 0.00 0.00 2.85
181 185 6.146837 CACATGATAGTATTGTAGGAGCAAGC 59.853 42.308 0.00 0.00 0.00 4.01
214 218 8.528044 AAAACACCCATCTAAAAAGTACAGAA 57.472 30.769 0.00 0.00 0.00 3.02
217 221 7.714377 TCGTAAAACACCCATCTAAAAAGTACA 59.286 33.333 0.00 0.00 0.00 2.90
218 222 8.086851 TCGTAAAACACCCATCTAAAAAGTAC 57.913 34.615 0.00 0.00 0.00 2.73
220 224 7.571080 TTCGTAAAACACCCATCTAAAAAGT 57.429 32.000 0.00 0.00 0.00 2.66
241 245 5.581605 CCTTGGTTCACAAATGGATATTCG 58.418 41.667 0.00 0.00 38.91 3.34
242 246 5.127682 AGCCTTGGTTCACAAATGGATATTC 59.872 40.000 0.00 0.00 38.91 1.75
243 247 5.025453 AGCCTTGGTTCACAAATGGATATT 58.975 37.500 0.00 0.00 38.91 1.28
244 248 4.613437 AGCCTTGGTTCACAAATGGATAT 58.387 39.130 0.00 0.00 38.91 1.63
245 249 4.016444 GAGCCTTGGTTCACAAATGGATA 58.984 43.478 0.00 0.00 38.91 2.59
246 250 2.827921 GAGCCTTGGTTCACAAATGGAT 59.172 45.455 0.00 0.00 38.91 3.41
247 251 2.238521 GAGCCTTGGTTCACAAATGGA 58.761 47.619 0.00 0.00 38.91 3.41
248 252 1.962807 TGAGCCTTGGTTCACAAATGG 59.037 47.619 2.02 0.00 38.91 3.16
249 253 3.508793 AGATGAGCCTTGGTTCACAAATG 59.491 43.478 8.32 0.00 38.91 2.32
250 254 3.508793 CAGATGAGCCTTGGTTCACAAAT 59.491 43.478 8.32 0.00 38.91 2.32
251 255 2.886523 CAGATGAGCCTTGGTTCACAAA 59.113 45.455 8.32 0.00 38.91 2.83
252 256 2.507484 CAGATGAGCCTTGGTTCACAA 58.493 47.619 8.32 0.00 37.55 3.33
253 257 1.883638 GCAGATGAGCCTTGGTTCACA 60.884 52.381 8.32 0.00 0.00 3.58
254 258 0.807496 GCAGATGAGCCTTGGTTCAC 59.193 55.000 8.32 3.79 0.00 3.18
255 259 0.401356 TGCAGATGAGCCTTGGTTCA 59.599 50.000 8.57 8.57 0.00 3.18
256 260 0.807496 GTGCAGATGAGCCTTGGTTC 59.193 55.000 0.00 0.00 0.00 3.62
257 261 0.610232 GGTGCAGATGAGCCTTGGTT 60.610 55.000 0.00 0.00 0.00 3.67
258 262 1.001641 GGTGCAGATGAGCCTTGGT 60.002 57.895 0.00 0.00 0.00 3.67
259 263 1.751927 GGGTGCAGATGAGCCTTGG 60.752 63.158 0.00 0.00 0.00 3.61
260 264 2.110967 CGGGTGCAGATGAGCCTTG 61.111 63.158 0.00 0.00 0.00 3.61
261 265 2.270205 CGGGTGCAGATGAGCCTT 59.730 61.111 0.00 0.00 0.00 4.35
262 266 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
263 267 2.252072 TAACCGGGTGCAGATGAGCC 62.252 60.000 0.00 0.00 0.00 4.70
264 268 0.392461 TTAACCGGGTGCAGATGAGC 60.392 55.000 0.00 0.00 0.00 4.26
265 269 1.207089 TCTTAACCGGGTGCAGATGAG 59.793 52.381 0.00 0.00 0.00 2.90
266 270 1.271856 TCTTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
267 271 2.107950 TTCTTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
268 272 2.871096 TTTCTTAACCGGGTGCAGAT 57.129 45.000 0.00 0.00 0.00 2.90
269 273 2.642154 TTTTCTTAACCGGGTGCAGA 57.358 45.000 0.00 0.00 0.00 4.26
338 342 9.683069 CCTCATGCACTAAATTATTTTCCATAC 57.317 33.333 0.00 0.00 0.00 2.39
339 343 8.359642 GCCTCATGCACTAAATTATTTTCCATA 58.640 33.333 0.00 0.00 40.77 2.74
340 344 7.212274 GCCTCATGCACTAAATTATTTTCCAT 58.788 34.615 0.00 0.00 40.77 3.41
341 345 6.572519 GCCTCATGCACTAAATTATTTTCCA 58.427 36.000 0.00 0.00 40.77 3.53
342 346 5.687285 CGCCTCATGCACTAAATTATTTTCC 59.313 40.000 0.00 0.00 41.33 3.13
343 347 5.173854 GCGCCTCATGCACTAAATTATTTTC 59.826 40.000 0.00 0.00 41.33 2.29
344 348 5.043248 GCGCCTCATGCACTAAATTATTTT 58.957 37.500 0.00 0.00 41.33 1.82
345 349 4.097741 TGCGCCTCATGCACTAAATTATTT 59.902 37.500 4.18 0.00 41.33 1.40
346 350 3.631686 TGCGCCTCATGCACTAAATTATT 59.368 39.130 4.18 0.00 41.33 1.40
347 351 3.213506 TGCGCCTCATGCACTAAATTAT 58.786 40.909 4.18 0.00 41.33 1.28
348 352 2.637947 TGCGCCTCATGCACTAAATTA 58.362 42.857 4.18 0.00 41.33 1.40
349 353 1.462616 TGCGCCTCATGCACTAAATT 58.537 45.000 4.18 0.00 41.33 1.82
350 354 3.173540 TGCGCCTCATGCACTAAAT 57.826 47.368 4.18 0.00 41.33 1.40
351 355 4.711892 TGCGCCTCATGCACTAAA 57.288 50.000 4.18 0.00 41.33 1.85
356 360 4.019312 TGGAGTGCGCCTCATGCA 62.019 61.111 22.04 11.70 42.40 3.96
357 361 3.503363 GTGGAGTGCGCCTCATGC 61.503 66.667 22.04 11.02 42.40 4.06
358 362 0.957395 AAAGTGGAGTGCGCCTCATG 60.957 55.000 22.04 0.00 42.40 3.07
359 363 0.250901 AAAAGTGGAGTGCGCCTCAT 60.251 50.000 22.04 9.03 42.40 2.90
360 364 0.884704 GAAAAGTGGAGTGCGCCTCA 60.885 55.000 22.04 6.60 42.40 3.86
361 365 0.884704 TGAAAAGTGGAGTGCGCCTC 60.885 55.000 15.12 15.12 39.67 4.70
362 366 0.886490 CTGAAAAGTGGAGTGCGCCT 60.886 55.000 4.18 0.32 0.00 5.52
363 367 0.884704 TCTGAAAAGTGGAGTGCGCC 60.885 55.000 4.18 0.00 0.00 6.53
364 368 1.129437 GATCTGAAAAGTGGAGTGCGC 59.871 52.381 0.00 0.00 0.00 6.09
365 369 2.416747 TGATCTGAAAAGTGGAGTGCG 58.583 47.619 0.00 0.00 0.00 5.34
366 370 5.159209 CAAATGATCTGAAAAGTGGAGTGC 58.841 41.667 0.00 0.00 0.00 4.40
367 371 5.474532 TCCAAATGATCTGAAAAGTGGAGTG 59.525 40.000 0.00 0.00 30.57 3.51
368 372 5.474876 GTCCAAATGATCTGAAAAGTGGAGT 59.525 40.000 0.00 0.00 34.68 3.85
369 373 5.474532 TGTCCAAATGATCTGAAAAGTGGAG 59.525 40.000 0.00 0.00 34.68 3.86
370 374 5.384336 TGTCCAAATGATCTGAAAAGTGGA 58.616 37.500 0.00 0.00 0.00 4.02
371 375 5.710513 TGTCCAAATGATCTGAAAAGTGG 57.289 39.130 0.00 0.00 0.00 4.00
372 376 8.680001 TCATATGTCCAAATGATCTGAAAAGTG 58.320 33.333 1.90 0.00 0.00 3.16
373 377 8.812513 TCATATGTCCAAATGATCTGAAAAGT 57.187 30.769 1.90 0.00 0.00 2.66
374 378 8.900781 ACTCATATGTCCAAATGATCTGAAAAG 58.099 33.333 1.90 0.00 31.95 2.27
375 379 8.812513 ACTCATATGTCCAAATGATCTGAAAA 57.187 30.769 1.90 0.00 31.95 2.29
376 380 9.551734 CTACTCATATGTCCAAATGATCTGAAA 57.448 33.333 1.90 0.00 31.95 2.69
377 381 8.708378 ACTACTCATATGTCCAAATGATCTGAA 58.292 33.333 1.90 0.00 31.95 3.02
378 382 8.255111 ACTACTCATATGTCCAAATGATCTGA 57.745 34.615 1.90 0.00 31.95 3.27
379 383 8.899427 AACTACTCATATGTCCAAATGATCTG 57.101 34.615 1.90 0.00 31.95 2.90
380 384 8.932610 AGAACTACTCATATGTCCAAATGATCT 58.067 33.333 1.90 0.00 31.95 2.75
381 385 9.202273 GAGAACTACTCATATGTCCAAATGATC 57.798 37.037 1.90 0.00 44.36 2.92
397 401 8.451748 AGTTTGTCTTTTTGTTGAGAACTACTC 58.548 33.333 0.00 0.00 45.11 2.59
398 402 8.237267 CAGTTTGTCTTTTTGTTGAGAACTACT 58.763 33.333 0.00 0.00 0.00 2.57
399 403 7.484959 CCAGTTTGTCTTTTTGTTGAGAACTAC 59.515 37.037 0.00 0.00 0.00 2.73
400 404 7.362574 CCCAGTTTGTCTTTTTGTTGAGAACTA 60.363 37.037 0.00 0.00 0.00 2.24
401 405 6.389906 CCAGTTTGTCTTTTTGTTGAGAACT 58.610 36.000 0.00 0.00 0.00 3.01
402 406 5.576774 CCCAGTTTGTCTTTTTGTTGAGAAC 59.423 40.000 0.00 0.00 0.00 3.01
403 407 5.245075 ACCCAGTTTGTCTTTTTGTTGAGAA 59.755 36.000 0.00 0.00 0.00 2.87
404 408 4.770010 ACCCAGTTTGTCTTTTTGTTGAGA 59.230 37.500 0.00 0.00 0.00 3.27
405 409 5.072040 ACCCAGTTTGTCTTTTTGTTGAG 57.928 39.130 0.00 0.00 0.00 3.02
406 410 4.524714 TGACCCAGTTTGTCTTTTTGTTGA 59.475 37.500 0.00 0.00 33.83 3.18
407 411 4.815269 TGACCCAGTTTGTCTTTTTGTTG 58.185 39.130 0.00 0.00 33.83 3.33
408 412 4.770010 TCTGACCCAGTTTGTCTTTTTGTT 59.230 37.500 0.00 0.00 33.83 2.83
409 413 4.340617 TCTGACCCAGTTTGTCTTTTTGT 58.659 39.130 0.00 0.00 33.83 2.83
410 414 4.981806 TCTGACCCAGTTTGTCTTTTTG 57.018 40.909 0.00 0.00 33.83 2.44
411 415 4.770010 TGTTCTGACCCAGTTTGTCTTTTT 59.230 37.500 0.00 0.00 33.83 1.94
412 416 4.340617 TGTTCTGACCCAGTTTGTCTTTT 58.659 39.130 0.00 0.00 33.83 2.27
413 417 3.963129 TGTTCTGACCCAGTTTGTCTTT 58.037 40.909 0.00 0.00 33.83 2.52
414 418 3.644966 TGTTCTGACCCAGTTTGTCTT 57.355 42.857 0.00 0.00 33.83 3.01
415 419 3.644966 TTGTTCTGACCCAGTTTGTCT 57.355 42.857 0.00 0.00 33.83 3.41
416 420 4.819630 TGTATTGTTCTGACCCAGTTTGTC 59.180 41.667 0.00 0.00 32.61 3.18
417 421 4.787551 TGTATTGTTCTGACCCAGTTTGT 58.212 39.130 0.00 0.00 32.61 2.83
418 422 5.473162 TCATGTATTGTTCTGACCCAGTTTG 59.527 40.000 0.00 0.00 32.61 2.93
419 423 5.630121 TCATGTATTGTTCTGACCCAGTTT 58.370 37.500 0.00 0.00 32.61 2.66
420 424 5.241403 TCATGTATTGTTCTGACCCAGTT 57.759 39.130 0.00 0.00 32.61 3.16
421 425 4.908601 TCATGTATTGTTCTGACCCAGT 57.091 40.909 0.00 0.00 32.61 4.00
422 426 5.003160 TGTTCATGTATTGTTCTGACCCAG 58.997 41.667 0.00 0.00 0.00 4.45
423 427 4.979335 TGTTCATGTATTGTTCTGACCCA 58.021 39.130 0.00 0.00 0.00 4.51
424 428 6.515272 AATGTTCATGTATTGTTCTGACCC 57.485 37.500 0.00 0.00 0.00 4.46
439 443 9.787532 CGGTCTGTGAAAAATATTAATGTTCAT 57.212 29.630 0.00 0.00 31.38 2.57
440 444 8.788806 ACGGTCTGTGAAAAATATTAATGTTCA 58.211 29.630 0.00 0.57 0.00 3.18
451 455 9.594478 AAGAAAAATTTACGGTCTGTGAAAAAT 57.406 25.926 0.00 0.00 28.99 1.82
452 456 8.989653 AAGAAAAATTTACGGTCTGTGAAAAA 57.010 26.923 0.00 0.00 28.99 1.94
453 457 8.989653 AAAGAAAAATTTACGGTCTGTGAAAA 57.010 26.923 0.00 0.00 28.99 2.29
479 483 4.708177 ACAAAAGAGTAGCTCTCAGCAAA 58.292 39.130 13.42 0.00 45.56 3.68
482 486 3.258228 GGACAAAAGAGTAGCTCTCAGC 58.742 50.000 13.42 0.00 44.98 4.26
483 487 4.527509 TGGACAAAAGAGTAGCTCTCAG 57.472 45.455 13.42 5.31 44.98 3.35
486 490 5.869579 TCATTTGGACAAAAGAGTAGCTCT 58.130 37.500 1.17 0.00 43.37 4.09
488 492 6.479884 AGATCATTTGGACAAAAGAGTAGCT 58.520 36.000 8.41 0.00 32.53 3.32
497 501 9.206870 GCTCAAATTTTAGATCATTTGGACAAA 57.793 29.630 13.37 0.00 39.76 2.83
499 503 8.125978 AGCTCAAATTTTAGATCATTTGGACA 57.874 30.769 13.37 0.00 39.76 4.02
500 504 9.508567 GTAGCTCAAATTTTAGATCATTTGGAC 57.491 33.333 13.37 8.06 39.76 4.02
501 505 9.466497 AGTAGCTCAAATTTTAGATCATTTGGA 57.534 29.630 13.37 3.79 39.76 3.53
502 506 9.727627 GAGTAGCTCAAATTTTAGATCATTTGG 57.272 33.333 13.37 7.74 39.76 3.28
505 509 9.678260 ACTGAGTAGCTCAAATTTTAGATCATT 57.322 29.630 3.51 0.00 40.18 2.57
506 510 9.678260 AACTGAGTAGCTCAAATTTTAGATCAT 57.322 29.630 3.51 0.00 40.18 2.45
507 511 8.939929 CAACTGAGTAGCTCAAATTTTAGATCA 58.060 33.333 3.51 1.57 40.18 2.92
511 515 7.173218 TGGACAACTGAGTAGCTCAAATTTTAG 59.827 37.037 0.00 0.00 40.18 1.85
512 516 6.995686 TGGACAACTGAGTAGCTCAAATTTTA 59.004 34.615 0.00 0.00 40.18 1.52
513 517 5.827797 TGGACAACTGAGTAGCTCAAATTTT 59.172 36.000 0.00 0.00 40.18 1.82
516 520 4.623932 TGGACAACTGAGTAGCTCAAAT 57.376 40.909 0.00 0.00 40.18 2.32
519 523 4.040339 TCATTTGGACAACTGAGTAGCTCA 59.960 41.667 0.00 0.00 38.25 4.26
520 524 4.569943 TCATTTGGACAACTGAGTAGCTC 58.430 43.478 0.00 0.00 0.00 4.09
521 525 4.623932 TCATTTGGACAACTGAGTAGCT 57.376 40.909 1.54 0.00 0.00 3.32
522 526 5.181748 AGATCATTTGGACAACTGAGTAGC 58.818 41.667 10.22 2.09 34.26 3.58
523 527 8.777865 TTTAGATCATTTGGACAACTGAGTAG 57.222 34.615 10.22 0.00 34.26 2.57
524 528 9.739276 ATTTTAGATCATTTGGACAACTGAGTA 57.261 29.630 10.22 3.40 34.26 2.59
526 530 9.918630 AAATTTTAGATCATTTGGACAACTGAG 57.081 29.630 10.22 0.00 34.26 3.35
527 531 9.695526 CAAATTTTAGATCATTTGGACAACTGA 57.304 29.630 7.42 7.42 36.93 3.41
539 543 4.202050 GGTGCGCTCCAAATTTTAGATCAT 60.202 41.667 23.09 0.00 0.00 2.45
540 544 3.128589 GGTGCGCTCCAAATTTTAGATCA 59.871 43.478 23.09 0.00 0.00 2.92
541 545 3.378427 AGGTGCGCTCCAAATTTTAGATC 59.622 43.478 28.68 0.00 0.00 2.75
542 546 3.356290 AGGTGCGCTCCAAATTTTAGAT 58.644 40.909 28.68 2.54 0.00 1.98
543 547 2.747446 GAGGTGCGCTCCAAATTTTAGA 59.253 45.455 28.68 0.00 0.00 2.10
544 548 2.487762 TGAGGTGCGCTCCAAATTTTAG 59.512 45.455 28.68 0.00 0.00 1.85
545 549 2.509569 TGAGGTGCGCTCCAAATTTTA 58.490 42.857 28.68 3.26 0.00 1.52
547 551 1.203052 CATGAGGTGCGCTCCAAATTT 59.797 47.619 28.68 9.09 0.00 1.82
548 552 0.813184 CATGAGGTGCGCTCCAAATT 59.187 50.000 28.68 9.48 0.00 1.82
550 554 2.334946 GCATGAGGTGCGCTCCAAA 61.335 57.895 28.68 17.08 45.23 3.28
551 555 2.747460 GCATGAGGTGCGCTCCAA 60.747 61.111 28.68 17.43 45.23 3.53
559 563 5.679734 AAGATAATTTAGCGCATGAGGTG 57.320 39.130 11.47 0.00 0.00 4.00
560 564 5.822519 TGAAAGATAATTTAGCGCATGAGGT 59.177 36.000 11.47 6.36 0.00 3.85
561 565 6.304356 TGAAAGATAATTTAGCGCATGAGG 57.696 37.500 11.47 0.00 0.00 3.86
562 566 8.498358 TGTATGAAAGATAATTTAGCGCATGAG 58.502 33.333 11.47 0.00 0.00 2.90
564 568 9.449550 TTTGTATGAAAGATAATTTAGCGCATG 57.550 29.630 11.47 0.00 0.00 4.06
632 669 4.467082 AGCTGCACCCATGATGAATAAAAA 59.533 37.500 1.02 0.00 0.00 1.94
634 671 3.382227 CAGCTGCACCCATGATGAATAAA 59.618 43.478 0.00 0.00 0.00 1.40
636 673 2.173143 TCAGCTGCACCCATGATGAATA 59.827 45.455 9.47 0.00 0.00 1.75
637 674 1.064240 TCAGCTGCACCCATGATGAAT 60.064 47.619 9.47 0.00 0.00 2.57
638 675 0.328926 TCAGCTGCACCCATGATGAA 59.671 50.000 9.47 0.00 0.00 2.57
639 676 0.107361 CTCAGCTGCACCCATGATGA 60.107 55.000 9.47 0.00 0.00 2.92
640 677 1.725557 GCTCAGCTGCACCCATGATG 61.726 60.000 9.47 0.00 0.00 3.07
641 678 1.453379 GCTCAGCTGCACCCATGAT 60.453 57.895 9.47 0.00 0.00 2.45
642 679 2.045634 GCTCAGCTGCACCCATGA 60.046 61.111 9.47 0.00 0.00 3.07
643 680 3.138798 GGCTCAGCTGCACCCATG 61.139 66.667 9.47 0.00 34.04 3.66
644 681 3.336568 AGGCTCAGCTGCACCCAT 61.337 61.111 18.16 1.84 34.04 4.00
651 688 2.044252 ATTGCCCAGGCTCAGCTG 60.044 61.111 7.63 7.63 42.51 4.24
652 689 2.044252 CATTGCCCAGGCTCAGCT 60.044 61.111 10.58 0.00 42.51 4.24
653 690 1.041447 ATTCATTGCCCAGGCTCAGC 61.041 55.000 10.58 0.00 42.51 4.26
654 691 1.030457 GATTCATTGCCCAGGCTCAG 58.970 55.000 10.58 0.00 42.51 3.35
655 692 0.749091 CGATTCATTGCCCAGGCTCA 60.749 55.000 10.58 0.00 42.51 4.26
656 693 2.028130 CGATTCATTGCCCAGGCTC 58.972 57.895 10.58 0.00 42.51 4.70
658 695 2.414594 GCGATTCATTGCCCAGGC 59.585 61.111 0.38 0.38 42.35 4.85
664 701 1.643832 GGACGAGGCGATTCATTGC 59.356 57.895 0.00 0.00 36.44 3.56
665 702 1.490693 CCGGACGAGGCGATTCATTG 61.491 60.000 0.00 0.00 0.00 2.82
666 703 1.227263 CCGGACGAGGCGATTCATT 60.227 57.895 0.00 0.00 0.00 2.57
667 704 2.417516 CCGGACGAGGCGATTCAT 59.582 61.111 0.00 0.00 0.00 2.57
679 716 3.063045 CCAATAGTCTTAAAACGCCGGAC 59.937 47.826 5.05 0.00 0.00 4.79
682 719 5.725864 GCTTACCAATAGTCTTAAAACGCCG 60.726 44.000 0.00 0.00 0.00 6.46
683 720 5.353400 AGCTTACCAATAGTCTTAAAACGCC 59.647 40.000 0.00 0.00 0.00 5.68
684 721 6.418585 AGCTTACCAATAGTCTTAAAACGC 57.581 37.500 0.00 0.00 0.00 4.84
876 1108 9.816354 ATGCGCCTTTTGTTAATTTCTAAATAT 57.184 25.926 4.18 0.00 0.00 1.28
931 1228 0.752658 GCTGGCTGGTTCCTTGTTTT 59.247 50.000 0.00 0.00 0.00 2.43
933 1230 1.898574 CGCTGGCTGGTTCCTTGTT 60.899 57.895 0.00 0.00 0.00 2.83
934 1231 2.281761 CGCTGGCTGGTTCCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
935 1232 2.032528 TCGCTGGCTGGTTCCTTG 59.967 61.111 0.00 0.00 0.00 3.61
937 1234 4.400961 GCTCGCTGGCTGGTTCCT 62.401 66.667 0.00 0.00 0.00 3.36
976 1281 0.166597 ATAACGTTCACGCGACTCGA 59.833 50.000 15.93 0.00 44.43 4.04
977 1282 1.766301 CTATAACGTTCACGCGACTCG 59.234 52.381 15.93 14.24 44.43 4.18
979 1284 1.542544 GCTATAACGTTCACGCGACT 58.457 50.000 15.93 0.00 44.43 4.18
980 1285 0.569349 GGCTATAACGTTCACGCGAC 59.431 55.000 15.93 0.00 44.43 5.19
981 1286 0.862701 CGGCTATAACGTTCACGCGA 60.863 55.000 15.93 0.00 44.43 5.87
1042 3238 1.402896 TTTGTGCGGCAATTTGGGGA 61.403 50.000 3.23 0.00 36.89 4.81
1043 3239 0.533755 TTTTGTGCGGCAATTTGGGG 60.534 50.000 3.23 0.00 36.89 4.96
1067 3263 4.641645 TGCTCGTGCTGGGTTGGG 62.642 66.667 11.19 0.00 40.48 4.12
1068 3264 3.357079 GTGCTCGTGCTGGGTTGG 61.357 66.667 11.19 0.00 40.48 3.77
1071 3267 4.626081 GTGGTGCTCGTGCTGGGT 62.626 66.667 11.19 0.00 40.48 4.51
1127 3346 3.878519 GGGCGTCGTCGAGAGAGG 61.879 72.222 6.17 6.25 46.73 3.69
1161 3392 1.128809 TTACCTTGGGGTGGAAGCGA 61.129 55.000 0.00 0.00 46.75 4.93
1197 3428 2.730672 CGCCTTCGTCTTCGCCTTG 61.731 63.158 0.00 0.00 36.96 3.61
1201 3432 3.072666 GCTTCGCCTTCGTCTTCGC 62.073 63.158 0.00 0.00 36.96 4.70
1328 3565 2.492090 CGAAGTCCTCGCCCTCAG 59.508 66.667 0.00 0.00 41.49 3.35
1388 3625 1.270839 TGTAGAGCTTGGTGTCCTTGC 60.271 52.381 0.00 0.00 0.00 4.01
1485 3722 0.454196 GTTCGACCTCTGAGCTCTCC 59.546 60.000 16.19 0.00 0.00 3.71
1500 3737 3.165058 TCGATCTCCAAATCCAGTTCG 57.835 47.619 0.00 0.00 34.52 3.95
1504 3741 5.242615 TCTCTGTATCGATCTCCAAATCCAG 59.757 44.000 0.00 0.00 0.00 3.86
1585 3822 1.783031 GCTGCTGCTTCCGATGATGG 61.783 60.000 8.53 0.00 36.03 3.51
1623 3860 2.939261 GCCTCGAAGAACCCCGACA 61.939 63.158 0.00 0.00 34.09 4.35
1650 3887 4.822350 ACTGCATCAAGATGATTCAGATGG 59.178 41.667 21.28 2.45 46.37 3.51
1677 3914 2.126071 ATCGACGGTCGCAGTTGG 60.126 61.111 24.76 0.00 40.21 3.77
1680 3917 2.178521 GACATCGACGGTCGCAGT 59.821 61.111 24.76 22.91 40.21 4.40
1692 3929 1.528586 CCGGAAATGAGATGCGACATC 59.471 52.381 0.00 10.63 33.04 3.06
1713 3950 1.449601 CCTGGTGGTACGTGATGCC 60.450 63.158 0.00 0.00 0.00 4.40
1829 4078 2.092538 AGAGAAATCCATGGCTCTGGTG 60.093 50.000 16.26 0.00 36.44 4.17
1833 4082 3.113824 AGTGAGAGAAATCCATGGCTCT 58.886 45.455 16.80 16.80 40.22 4.09
1899 4242 1.116308 TGCCCTCATTTGCCATCATG 58.884 50.000 0.00 0.00 0.00 3.07
1919 4262 2.761767 CTCATTGTGAAATCCATGGGCA 59.238 45.455 13.02 2.61 0.00 5.36
1942 4288 5.808540 ACAATGACATTGCATAATCTTGTGC 59.191 36.000 24.85 4.87 43.98 4.57
1980 4326 6.359804 TCTGTTAATATGATTGCTGCCTTCT 58.640 36.000 0.00 0.00 0.00 2.85
1981 4327 6.624352 TCTGTTAATATGATTGCTGCCTTC 57.376 37.500 0.00 0.00 0.00 3.46
1982 4328 6.516194 GCATCTGTTAATATGATTGCTGCCTT 60.516 38.462 0.00 0.00 0.00 4.35
1992 4338 4.948847 ACAGCTCGCATCTGTTAATATGA 58.051 39.130 0.00 0.00 41.61 2.15
2019 4365 1.000506 AGTGGCAGCAAAAGCATCTTG 59.999 47.619 0.00 0.00 0.00 3.02
2020 4366 1.000506 CAGTGGCAGCAAAAGCATCTT 59.999 47.619 0.00 0.00 0.00 2.40
2043 4389 0.537143 ACCATTTCTTGAGGCGCACA 60.537 50.000 10.83 6.01 0.00 4.57
2076 4422 1.689959 CATCAAAGCGGTTCACTTGC 58.310 50.000 0.00 0.00 0.00 4.01
2276 4622 8.671028 CATCTCTGATCAGTCTCTCTACATATG 58.329 40.741 21.92 0.00 0.00 1.78
2424 4770 2.887152 GACTGACCAAGCATTTTCCTGT 59.113 45.455 0.00 0.00 0.00 4.00
2472 4818 3.129287 AGTGTAACATAGCTTGCATTGGC 59.871 43.478 0.00 0.00 41.43 4.52
2474 4820 6.484643 AGGATAGTGTAACATAGCTTGCATTG 59.515 38.462 0.00 0.00 41.43 2.82
2562 4908 1.095807 GCAACGGGATTACCTCAGGC 61.096 60.000 0.00 0.00 36.97 4.85
2571 4917 2.858745 ACAACAAGTAGCAACGGGATT 58.141 42.857 0.00 0.00 0.00 3.01
2603 4949 8.162085 TCTGAAGAGAACCTACTTCTTACTGTA 58.838 37.037 0.00 0.00 39.53 2.74
2696 5042 8.584063 ACTATTTAATGAAACGGGGTTGTATT 57.416 30.769 0.00 0.00 0.00 1.89
2720 5073 9.067986 AGCACAAATAGAAGGGCTAATATAAAC 57.932 33.333 0.00 0.00 31.66 2.01
2729 5082 5.615289 CAGTATAGCACAAATAGAAGGGCT 58.385 41.667 0.00 0.00 35.50 5.19
2752 5105 4.923281 AGGCAATCAATTGTTTCGTAAAGC 59.077 37.500 5.13 2.38 39.88 3.51
2772 5125 4.439289 GCACAAAGACCATAAATCAGAGGC 60.439 45.833 0.00 0.00 0.00 4.70
2841 5205 8.413229 CCTTGATTTACTTTCTTTTGACCTTCA 58.587 33.333 0.00 0.00 0.00 3.02
2863 5227 5.343249 GCACCAATAAATAGAACTGCCTTG 58.657 41.667 0.00 0.00 0.00 3.61
2922 5456 8.715998 CAATAGTTCTACTGCAATGTATGGATC 58.284 37.037 0.00 0.00 0.00 3.36
2928 5462 7.390823 TCAACCAATAGTTCTACTGCAATGTA 58.609 34.615 0.00 0.00 36.18 2.29
2950 5641 9.793259 AAGTCCTGTCTTCTTATGTTTAATCAA 57.207 29.630 0.00 0.00 0.00 2.57
2988 5679 8.100791 ACTAACAATATACCATCACAACAGTGT 58.899 33.333 0.00 0.00 39.07 3.55
3048 5744 6.869388 CAGAGTCTCTCTAAAACAAGGGTAAC 59.131 42.308 0.00 0.00 38.99 2.50
3121 5820 4.206375 TGACAGCCAAACTCTTTGATTGA 58.794 39.130 0.00 0.00 43.26 2.57
3143 5842 6.662755 TCCCTACTGTCAATATGCAAAATCT 58.337 36.000 0.00 0.00 0.00 2.40
3150 5849 4.035675 GCAAGTTCCCTACTGTCAATATGC 59.964 45.833 0.00 0.00 37.12 3.14
3160 5859 1.339097 ACTCGTGCAAGTTCCCTACT 58.661 50.000 0.00 0.00 39.32 2.57
3185 5884 7.827236 ACCGTTCAAATTGAGGAGTTCATAATA 59.173 33.333 8.08 0.00 35.27 0.98
3186 5885 6.659242 ACCGTTCAAATTGAGGAGTTCATAAT 59.341 34.615 8.08 0.00 35.27 1.28
3191 5890 4.274950 TGAACCGTTCAAATTGAGGAGTTC 59.725 41.667 11.63 18.68 36.59 3.01
3197 5896 6.368791 TCAGTAGATGAACCGTTCAAATTGAG 59.631 38.462 17.64 7.66 43.95 3.02
3240 5940 1.457346 GCTACAGGCAGTGCTCAAAT 58.543 50.000 16.11 0.00 41.35 2.32
3288 5988 2.278182 AAACTGTGCCGCGCAAAACT 62.278 50.000 8.75 0.00 41.47 2.66
3293 5993 0.953471 AAGATAAACTGTGCCGCGCA 60.953 50.000 8.75 6.43 35.60 6.09
3295 5995 0.373716 GGAAGATAAACTGTGCCGCG 59.626 55.000 0.00 0.00 0.00 6.46
3305 6005 4.299485 GGGAGGAAGGAGAGGAAGATAAA 58.701 47.826 0.00 0.00 0.00 1.40
3307 6007 2.180308 GGGGAGGAAGGAGAGGAAGATA 59.820 54.545 0.00 0.00 0.00 1.98
3355 6055 7.068716 TGCACATAAGAGCTAAAGTGAGATCTA 59.931 37.037 0.00 0.00 41.29 1.98
3397 6097 6.701145 ATGAGAATCTACTCTGCTTTCGTA 57.299 37.500 0.00 0.00 37.73 3.43
3399 6099 6.291532 CGAAATGAGAATCTACTCTGCTTTCG 60.292 42.308 17.04 17.04 41.23 3.46
3424 6124 0.734942 GCTCATGTGCATGCACCAAC 60.735 55.000 40.01 24.22 45.63 3.77
3456 6156 3.195825 ACATGGGAGTAGAAGTTCTTCCG 59.804 47.826 11.40 3.48 32.26 4.30
3464 6164 6.599244 TCAAGCAAATTACATGGGAGTAGAAG 59.401 38.462 0.00 0.00 0.00 2.85
3474 6175 8.111836 GCATACACAAATCAAGCAAATTACATG 58.888 33.333 0.00 0.00 0.00 3.21
3569 6276 5.932303 TCCAGTCCTTCGTTTCATTAAGAAG 59.068 40.000 0.00 0.00 37.57 2.85
3573 6280 5.350365 CGATTCCAGTCCTTCGTTTCATTAA 59.650 40.000 0.00 0.00 0.00 1.40
3583 6290 6.203723 CAGGAAATTATCGATTCCAGTCCTTC 59.796 42.308 15.95 4.08 46.14 3.46
3615 6322 7.672983 ACCGGAGCATAATTTAATGACTATG 57.327 36.000 9.46 0.00 0.00 2.23
3616 6323 8.691661 AAACCGGAGCATAATTTAATGACTAT 57.308 30.769 9.46 0.00 0.00 2.12
3659 6367 2.602211 CAGAGAACTGAGCATAGCAACG 59.398 50.000 0.00 0.00 46.03 4.10
3710 6418 3.838244 AGCCTAGAAACAGTCACAACA 57.162 42.857 0.00 0.00 0.00 3.33
3749 6462 6.573434 CAGTACACTTGAATGCTCCTGTATA 58.427 40.000 0.00 0.00 0.00 1.47
3751 6464 4.820897 CAGTACACTTGAATGCTCCTGTA 58.179 43.478 0.00 0.00 0.00 2.74
3755 6468 2.426522 TGCAGTACACTTGAATGCTCC 58.573 47.619 0.00 0.00 37.76 4.70
3758 6471 4.083110 AGACAATGCAGTACACTTGAATGC 60.083 41.667 2.61 0.00 37.40 3.56
3764 6477 4.039730 ACAGAGAGACAATGCAGTACACTT 59.960 41.667 0.00 0.00 0.00 3.16
3790 6503 1.035139 AGAAACTTGGCAGGCAACAG 58.965 50.000 5.03 0.00 41.41 3.16
3813 6526 6.376299 AGCAATAACACATATATGCCTCATGG 59.624 38.462 12.79 1.16 32.80 3.66
3869 6582 5.416083 CATACAGAAAATCAGGTACGTCCA 58.584 41.667 0.00 0.00 39.02 4.02
3870 6583 4.270325 GCATACAGAAAATCAGGTACGTCC 59.730 45.833 0.00 0.00 0.00 4.79
3871 6584 5.109903 AGCATACAGAAAATCAGGTACGTC 58.890 41.667 0.00 0.00 0.00 4.34
3872 6585 5.086104 AGCATACAGAAAATCAGGTACGT 57.914 39.130 0.00 0.00 0.00 3.57
3873 6586 5.352284 AGAGCATACAGAAAATCAGGTACG 58.648 41.667 0.00 0.00 0.00 3.67
3874 6587 6.478344 CAGAGAGCATACAGAAAATCAGGTAC 59.522 42.308 0.00 0.00 0.00 3.34
3876 6589 5.046014 ACAGAGAGCATACAGAAAATCAGGT 60.046 40.000 0.00 0.00 0.00 4.00
4015 6739 8.915871 ATTGATACATTAATCACAAGTGCAAC 57.084 30.769 0.00 0.00 35.63 4.17
4051 6776 7.147742 GCATATCTCCCTTTGATAACCCAAAAA 60.148 37.037 0.00 0.00 35.83 1.94
4060 6785 3.516586 TCCGGCATATCTCCCTTTGATA 58.483 45.455 0.00 0.00 0.00 2.15
4067 6792 1.448540 CGCATCCGGCATATCTCCC 60.449 63.158 0.00 0.00 45.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.