Multiple sequence alignment - TraesCS6B01G416500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G416500 chr6B 100.000 5047 0 0 1 5047 688759894 688754848 0.000000e+00 9321
1 TraesCS6B01G416500 chr6B 86.822 387 32 14 1302 1671 688607755 688607371 1.010000e-111 414
2 TraesCS6B01G416500 chr6B 91.391 302 22 1 2715 3012 688606561 688606260 1.310000e-110 411
3 TraesCS6B01G416500 chr6B 88.034 351 31 5 2679 3024 688665143 688664799 6.080000e-109 405
4 TraesCS6B01G416500 chr6B 78.284 571 83 21 3137 3695 688664791 688664250 3.770000e-86 329
5 TraesCS6B01G416500 chr6B 84.150 347 38 9 1341 1671 688666425 688666080 2.270000e-83 320
6 TraesCS6B01G416500 chr6B 78.153 563 69 33 3172 3694 688606206 688605658 4.910000e-80 309
7 TraesCS6B01G416500 chr6B 83.429 175 19 6 1832 1998 688665995 688665823 2.430000e-33 154
8 TraesCS6B01G416500 chr6B 91.509 106 6 3 3032 3135 490204874 490204978 5.270000e-30 143
9 TraesCS6B01G416500 chr6B 92.000 100 7 1 3040 3138 315650304 315650205 6.810000e-29 139
10 TraesCS6B01G416500 chr6A 86.511 1794 93 60 357 2077 599258432 599260149 0.000000e+00 1834
11 TraesCS6B01G416500 chr6A 85.407 1117 129 15 3938 5047 599261883 599262972 0.000000e+00 1129
12 TraesCS6B01G416500 chr6A 88.429 942 66 13 2129 3041 599260147 599261074 0.000000e+00 1096
13 TraesCS6B01G416500 chr6A 85.642 787 72 19 3146 3893 599261089 599261873 0.000000e+00 789
14 TraesCS6B01G416500 chr6A 81.380 768 97 20 3940 4697 599623305 599624036 7.280000e-163 584
15 TraesCS6B01G416500 chr6A 81.924 603 66 15 3134 3695 599622311 599622911 2.130000e-128 470
16 TraesCS6B01G416500 chr6A 89.112 349 29 3 2679 3023 599716349 599716692 4.670000e-115 425
17 TraesCS6B01G416500 chr6A 87.921 356 32 7 1309 1655 599715271 599715624 4.700000e-110 409
18 TraesCS6B01G416500 chr6A 90.196 306 26 1 2740 3041 599622007 599622312 3.660000e-106 396
19 TraesCS6B01G416500 chr6A 78.686 563 77 20 3156 3688 599716716 599717265 8.100000e-88 335
20 TraesCS6B01G416500 chr6A 83.019 212 29 5 1792 1998 599621153 599621362 8.630000e-43 185
21 TraesCS6B01G416500 chr6A 82.524 206 18 8 1783 1978 599197343 599197540 1.120000e-36 165
22 TraesCS6B01G416500 chr6A 81.373 204 33 3 3137 3339 599215208 599215407 1.450000e-35 161
23 TraesCS6B01G416500 chr6A 93.269 104 5 2 3037 3138 617653809 617653912 8.750000e-33 152
24 TraesCS6B01G416500 chr6A 92.784 97 6 1 3040 3135 507116916 507117012 6.810000e-29 139
25 TraesCS6B01G416500 chr6A 84.211 133 9 7 2906 3031 599215069 599215196 8.880000e-23 119
26 TraesCS6B01G416500 chr6D 87.740 1509 87 38 300 1740 453185432 453186910 0.000000e+00 1672
27 TraesCS6B01G416500 chr6D 87.354 1115 133 5 3930 5038 453189283 453190395 0.000000e+00 1271
28 TraesCS6B01G416500 chr6D 81.604 1272 140 49 1819 3041 453187176 453188402 0.000000e+00 966
29 TraesCS6B01G416500 chr6D 87.675 787 63 11 3147 3900 453188499 453189284 0.000000e+00 885
30 TraesCS6B01G416500 chr6D 82.700 763 93 24 3134 3875 453240609 453241353 4.260000e-180 641
31 TraesCS6B01G416500 chr6D 78.761 791 97 42 2270 3024 453239849 453240604 9.900000e-127 464
32 TraesCS6B01G416500 chr6D 88.825 349 30 3 2679 3023 453346799 453347142 2.170000e-113 420
33 TraesCS6B01G416500 chr6D 86.364 374 35 8 1309 1668 453345678 453346049 1.320000e-105 394
34 TraesCS6B01G416500 chr6D 79.385 553 79 16 3158 3688 453347169 453347708 1.730000e-94 357
35 TraesCS6B01G416500 chr6D 86.184 304 21 10 1 283 453185144 453185447 4.910000e-80 309
36 TraesCS6B01G416500 chr6D 82.591 247 24 8 1768 1998 453346071 453346314 3.080000e-47 200
37 TraesCS6B01G416500 chr6D 85.816 141 20 0 73 213 453343868 453344008 3.150000e-32 150
38 TraesCS6B01G416500 chr6D 90.588 85 4 2 1847 1929 453239695 453239777 5.340000e-20 110
39 TraesCS6B01G416500 chr4B 92.929 99 6 1 3040 3137 193527678 193527580 5.270000e-30 143
40 TraesCS6B01G416500 chr7D 93.617 94 5 1 3043 3135 213794508 213794415 6.810000e-29 139
41 TraesCS6B01G416500 chr7D 91.089 101 7 2 3036 3135 115247341 115247242 8.810000e-28 135
42 TraesCS6B01G416500 chr4D 91.262 103 7 1 3035 3135 473133442 473133544 6.810000e-29 139
43 TraesCS6B01G416500 chr3A 88.393 112 10 3 3025 3135 90295987 90295878 1.140000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G416500 chr6B 688754848 688759894 5046 True 9321.000000 9321 100.000000 1 5047 1 chr6B.!!$R2 5046
1 TraesCS6B01G416500 chr6B 688605658 688607755 2097 True 378.000000 414 85.455333 1302 3694 3 chr6B.!!$R3 2392
2 TraesCS6B01G416500 chr6B 688664250 688666425 2175 True 302.000000 405 83.474250 1341 3695 4 chr6B.!!$R4 2354
3 TraesCS6B01G416500 chr6A 599258432 599262972 4540 False 1212.000000 1834 86.497250 357 5047 4 chr6A.!!$F5 4690
4 TraesCS6B01G416500 chr6A 599621153 599624036 2883 False 408.750000 584 84.129750 1792 4697 4 chr6A.!!$F6 2905
5 TraesCS6B01G416500 chr6A 599715271 599717265 1994 False 389.666667 425 85.239667 1309 3688 3 chr6A.!!$F7 2379
6 TraesCS6B01G416500 chr6D 453185144 453190395 5251 False 1020.600000 1672 86.111400 1 5038 5 chr6D.!!$F1 5037
7 TraesCS6B01G416500 chr6D 453239695 453241353 1658 False 405.000000 641 84.016333 1847 3875 3 chr6D.!!$F2 2028
8 TraesCS6B01G416500 chr6D 453343868 453347708 3840 False 304.200000 420 84.596200 73 3688 5 chr6D.!!$F3 3615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 212 0.388134 GACGTCGCAGTTCCTTAGCA 60.388 55.0 0.00 0.00 0.00 3.49 F
1035 1664 0.119155 AGGGAGGTTGATGGAGACCA 59.881 55.0 0.00 0.00 38.42 4.02 F
1494 2250 0.316522 CTGCGGGACATCGAGATGAT 59.683 55.0 18.76 4.32 41.20 2.45 F
2712 4098 0.250424 TGCGTATGGCTCCATCCATG 60.250 55.0 4.41 0.00 45.84 3.66 F
2892 4397 0.331616 TCCTCATCCGTCTCTGGTCA 59.668 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 2218 1.152777 CCGCAGCCCCATGGAAATA 60.153 57.895 15.22 0.0 0.00 1.40 R
2712 4098 1.019278 CACGTCTGCATACCACCACC 61.019 60.000 0.00 0.0 0.00 4.61 R
3449 5073 1.010935 CACATTGCTGAGCGAGACGT 61.011 55.000 0.00 0.0 0.00 4.34 R
3743 5387 0.175989 CTTGTCTAGCTTCCCGGTCC 59.824 60.000 0.00 0.0 0.00 4.46 R
4849 6712 0.255318 AATGCAGCTCTTCTGGAGGG 59.745 55.000 0.00 0.0 46.46 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.755929 GAGAATCTGGTGGTGCGTC 58.244 57.895 0.00 0.00 0.00 5.19
38 39 4.193334 TGCGTCGCGAGCTAGCAT 62.193 61.111 24.04 1.44 36.85 3.79
43 51 1.010013 TCGCGAGCTAGCATGTACG 60.010 57.895 18.83 12.81 36.85 3.67
54 62 3.913548 AGCATGTACGCATTCAAACAA 57.086 38.095 0.00 0.00 31.99 2.83
67 75 9.236691 ACGCATTCAAACAAATACATATTGATC 57.763 29.630 0.00 0.00 30.81 2.92
68 76 9.235537 CGCATTCAAACAAATACATATTGATCA 57.764 29.630 0.00 0.00 30.81 2.92
148 163 3.626217 GCAAAAGGTTAGGGTCGATTAGG 59.374 47.826 0.00 0.00 0.00 2.69
153 168 2.483188 GGTTAGGGTCGATTAGGTGCTG 60.483 54.545 0.00 0.00 0.00 4.41
197 212 0.388134 GACGTCGCAGTTCCTTAGCA 60.388 55.000 0.00 0.00 0.00 3.49
227 257 1.002315 ACGTACGCCACCACCTTTAAT 59.998 47.619 16.72 0.00 0.00 1.40
229 259 3.260740 CGTACGCCACCACCTTTAATTA 58.739 45.455 0.52 0.00 0.00 1.40
242 307 7.553044 ACCACCTTTAATTATCGGAGAAGAAAG 59.447 37.037 12.26 12.26 43.58 2.62
254 319 5.011738 TCGGAGAAGAAAGGAACAACAGTAT 59.988 40.000 0.00 0.00 0.00 2.12
288 355 4.922206 TGGGACACTTGATAGATTTTGCT 58.078 39.130 0.00 0.00 0.00 3.91
289 356 5.324409 TGGGACACTTGATAGATTTTGCTT 58.676 37.500 0.00 0.00 0.00 3.91
290 357 5.774690 TGGGACACTTGATAGATTTTGCTTT 59.225 36.000 0.00 0.00 0.00 3.51
291 358 6.267471 TGGGACACTTGATAGATTTTGCTTTT 59.733 34.615 0.00 0.00 0.00 2.27
292 359 7.154656 GGGACACTTGATAGATTTTGCTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
293 360 7.116805 GGGACACTTGATAGATTTTGCTTTTTG 59.883 37.037 0.00 0.00 0.00 2.44
294 361 7.867403 GGACACTTGATAGATTTTGCTTTTTGA 59.133 33.333 0.00 0.00 0.00 2.69
295 362 9.248291 GACACTTGATAGATTTTGCTTTTTGAA 57.752 29.630 0.00 0.00 0.00 2.69
296 363 9.598517 ACACTTGATAGATTTTGCTTTTTGAAA 57.401 25.926 0.00 0.00 0.00 2.69
299 366 9.571804 CTTGATAGATTTTGCTTTTTGAAAACG 57.428 29.630 0.00 0.00 0.00 3.60
300 367 8.071122 TGATAGATTTTGCTTTTTGAAAACGG 57.929 30.769 0.00 0.00 0.00 4.44
301 368 5.733226 AGATTTTGCTTTTTGAAAACGGG 57.267 34.783 0.00 0.00 0.00 5.28
302 369 5.423886 AGATTTTGCTTTTTGAAAACGGGA 58.576 33.333 0.00 0.00 0.00 5.14
303 370 4.930463 TTTTGCTTTTTGAAAACGGGAC 57.070 36.364 0.00 0.00 0.00 4.46
304 371 3.594603 TTGCTTTTTGAAAACGGGACA 57.405 38.095 0.00 0.00 0.00 4.02
305 372 2.882324 TGCTTTTTGAAAACGGGACAC 58.118 42.857 0.00 0.00 0.00 3.67
306 373 2.231478 TGCTTTTTGAAAACGGGACACA 59.769 40.909 0.00 0.00 0.00 3.72
307 374 3.118956 TGCTTTTTGAAAACGGGACACAT 60.119 39.130 0.00 0.00 0.00 3.21
308 375 3.245048 GCTTTTTGAAAACGGGACACATG 59.755 43.478 0.00 0.00 0.00 3.21
309 376 4.677584 CTTTTTGAAAACGGGACACATGA 58.322 39.130 0.00 0.00 0.00 3.07
310 377 4.927978 TTTTGAAAACGGGACACATGAT 57.072 36.364 0.00 0.00 0.00 2.45
311 378 6.392625 TTTTTGAAAACGGGACACATGATA 57.607 33.333 0.00 0.00 0.00 2.15
312 379 5.621197 TTTGAAAACGGGACACATGATAG 57.379 39.130 0.00 0.00 0.00 2.08
313 380 4.545208 TGAAAACGGGACACATGATAGA 57.455 40.909 0.00 0.00 0.00 1.98
314 381 5.097742 TGAAAACGGGACACATGATAGAT 57.902 39.130 0.00 0.00 0.00 1.98
315 382 6.228616 TGAAAACGGGACACATGATAGATA 57.771 37.500 0.00 0.00 0.00 1.98
316 383 6.826668 TGAAAACGGGACACATGATAGATAT 58.173 36.000 0.00 0.00 0.00 1.63
317 384 7.279615 TGAAAACGGGACACATGATAGATATT 58.720 34.615 0.00 0.00 0.00 1.28
318 385 8.425703 TGAAAACGGGACACATGATAGATATTA 58.574 33.333 0.00 0.00 0.00 0.98
319 386 9.436957 GAAAACGGGACACATGATAGATATTAT 57.563 33.333 0.00 0.00 0.00 1.28
320 387 9.436957 AAAACGGGACACATGATAGATATTATC 57.563 33.333 0.00 0.00 0.00 1.75
321 388 7.718334 ACGGGACACATGATAGATATTATCA 57.282 36.000 0.00 8.89 38.20 2.15
322 389 8.311395 ACGGGACACATGATAGATATTATCAT 57.689 34.615 0.00 11.50 43.28 2.45
427 504 6.569179 TCCTTGCTTTAAGTTAATCACACC 57.431 37.500 0.00 0.00 34.45 4.16
453 573 5.951747 TCCATAATTAAATCCCCAGCTATGC 59.048 40.000 0.00 0.00 0.00 3.14
477 600 2.432444 CCTCCGTTGGTTGCTTGATTA 58.568 47.619 0.00 0.00 0.00 1.75
478 601 2.817258 CCTCCGTTGGTTGCTTGATTAA 59.183 45.455 0.00 0.00 0.00 1.40
479 602 3.119849 CCTCCGTTGGTTGCTTGATTAAG 60.120 47.826 0.00 0.00 36.97 1.85
521 644 0.899720 TCGACGCCCTGTTAATCCTT 59.100 50.000 0.00 0.00 0.00 3.36
532 655 6.055588 CCCTGTTAATCCTTTGTACGATCAT 58.944 40.000 0.00 0.00 0.00 2.45
555 680 9.405587 TCATATAAACTTACTTGCAAGCAAAAC 57.594 29.630 26.27 0.00 35.33 2.43
575 701 2.626743 ACTAACAAGCCAGACACGTACT 59.373 45.455 0.00 0.00 0.00 2.73
646 1183 5.857268 TGATGGTGATGATGTAACGATGAT 58.143 37.500 0.00 0.00 0.00 2.45
648 1185 3.809279 TGGTGATGATGTAACGATGATGC 59.191 43.478 0.00 0.00 0.00 3.91
649 1186 4.060900 GGTGATGATGTAACGATGATGCT 58.939 43.478 0.00 0.00 0.00 3.79
650 1187 4.084171 GGTGATGATGTAACGATGATGCTG 60.084 45.833 0.00 0.00 0.00 4.41
687 1229 9.429359 GGAGTGTGATGATGGACTAATAATTAG 57.571 37.037 0.00 0.00 39.18 1.73
688 1230 8.839310 AGTGTGATGATGGACTAATAATTAGC 57.161 34.615 0.00 0.00 36.71 3.09
689 1231 7.880195 AGTGTGATGATGGACTAATAATTAGCC 59.120 37.037 0.00 0.00 36.71 3.93
690 1232 7.119846 GTGTGATGATGGACTAATAATTAGCCC 59.880 40.741 0.00 0.00 36.43 5.19
691 1233 7.017551 TGTGATGATGGACTAATAATTAGCCCT 59.982 37.037 0.00 0.00 36.79 5.19
692 1234 7.335422 GTGATGATGGACTAATAATTAGCCCTG 59.665 40.741 0.00 0.00 36.79 4.45
693 1235 6.126863 TGATGGACTAATAATTAGCCCTGG 57.873 41.667 0.00 0.00 36.79 4.45
719 1261 1.105457 GCTGATGCTAAATGTGGCCA 58.895 50.000 0.00 0.00 36.03 5.36
720 1262 1.684983 GCTGATGCTAAATGTGGCCAT 59.315 47.619 9.72 0.00 36.03 4.40
748 1290 1.587088 GCCACATATGTTGCTGCGC 60.587 57.895 21.41 0.00 34.29 6.09
756 1298 2.126734 GTTGCTGCGCACATCACC 60.127 61.111 5.66 0.00 38.71 4.02
757 1299 2.281692 TTGCTGCGCACATCACCT 60.282 55.556 5.66 0.00 38.71 4.00
758 1300 1.003959 TTGCTGCGCACATCACCTA 60.004 52.632 5.66 0.00 38.71 3.08
759 1301 1.298157 TTGCTGCGCACATCACCTAC 61.298 55.000 5.66 0.00 38.71 3.18
760 1302 1.448540 GCTGCGCACATCACCTACT 60.449 57.895 5.66 0.00 0.00 2.57
776 1380 2.145298 CTACTCCCCCTCTTCTCCCTA 58.855 57.143 0.00 0.00 0.00 3.53
796 1400 1.830408 CTCCCTCCAGCGACCTAGG 60.830 68.421 7.41 7.41 0.00 3.02
797 1401 2.042843 CCCTCCAGCGACCTAGGT 60.043 66.667 16.26 16.26 0.00 3.08
936 1560 5.657474 CGCCTGGAAGTTAATAGAGTACAA 58.343 41.667 0.00 0.00 0.00 2.41
959 1583 1.248785 ACTTGCTCCATTGCTGGCTG 61.249 55.000 0.00 0.00 42.80 4.85
1035 1664 0.119155 AGGGAGGTTGATGGAGACCA 59.881 55.000 0.00 0.00 38.42 4.02
1040 1673 1.078426 GTTGATGGAGACCACCGGG 60.078 63.158 6.32 0.00 35.80 5.73
1212 1858 0.988145 CCTGCCAACCTCCCTATCCA 60.988 60.000 0.00 0.00 0.00 3.41
1263 1929 4.226846 AGCAACATAGATATATGCCCTGCT 59.773 41.667 18.97 18.97 36.85 4.24
1386 2120 2.087501 ACATACACACCGCGATTCAA 57.912 45.000 8.23 0.00 0.00 2.69
1417 2159 3.767711 TGTAGAGAGAGTTGAGCAGGAA 58.232 45.455 0.00 0.00 0.00 3.36
1494 2250 0.316522 CTGCGGGACATCGAGATGAT 59.683 55.000 18.76 4.32 41.20 2.45
1707 2473 2.093235 CCTCTCCTCTGTTCCATTCACC 60.093 54.545 0.00 0.00 0.00 4.02
1713 2479 4.104738 TCCTCTGTTCCATTCACCTTTTCT 59.895 41.667 0.00 0.00 0.00 2.52
1747 2517 7.613551 ATTACCACAGTTAGTTATCCCCTAG 57.386 40.000 0.00 0.00 0.00 3.02
1819 2597 4.962995 CCAGTCCCTCTCCACTAATCTTTA 59.037 45.833 0.00 0.00 0.00 1.85
1966 2952 2.194271 GGCTCTAATTCGGACTTGTCG 58.806 52.381 0.00 0.00 0.00 4.35
2013 3002 0.965866 TAGTGCTCACTCCGTCTGGG 60.966 60.000 5.72 0.00 42.54 4.45
2029 3018 4.141914 CGTCTGGGTTTATTAGGCTCTCTT 60.142 45.833 0.00 0.00 0.00 2.85
2030 3019 5.068723 CGTCTGGGTTTATTAGGCTCTCTTA 59.931 44.000 0.00 0.00 0.00 2.10
2129 3118 6.488683 AGATTTGTATTGGAACGAGGTTTTCA 59.511 34.615 0.00 0.00 0.00 2.69
2130 3119 6.452494 TTTGTATTGGAACGAGGTTTTCAA 57.548 33.333 0.00 0.00 0.00 2.69
2133 3122 7.747155 TGTATTGGAACGAGGTTTTCAATAA 57.253 32.000 14.09 7.37 35.74 1.40
2134 3123 8.343168 TGTATTGGAACGAGGTTTTCAATAAT 57.657 30.769 14.09 0.00 35.74 1.28
2135 3124 8.240682 TGTATTGGAACGAGGTTTTCAATAATG 58.759 33.333 14.09 0.00 35.74 1.90
2137 3126 6.642707 TGGAACGAGGTTTTCAATAATGTT 57.357 33.333 0.00 0.00 0.00 2.71
2138 3127 7.747155 TGGAACGAGGTTTTCAATAATGTTA 57.253 32.000 0.00 0.00 0.00 2.41
2139 3128 7.812648 TGGAACGAGGTTTTCAATAATGTTAG 58.187 34.615 0.00 0.00 0.00 2.34
2168 3157 9.448294 TTTTGTGACACGTGGTTTATATTTTAC 57.552 29.630 21.57 2.84 0.00 2.01
2170 3159 8.380743 TGTGACACGTGGTTTATATTTTACTT 57.619 30.769 21.57 0.00 0.00 2.24
2214 3203 9.682465 ACTTTAATCCAAAATAAGAGGAGGTAC 57.318 33.333 0.00 0.00 34.40 3.34
2390 3646 4.339748 TGTCAAGTGGGCAGCATTATTTA 58.660 39.130 0.00 0.00 0.00 1.40
2398 3654 8.021898 AGTGGGCAGCATTATTTACATATTTT 57.978 30.769 0.00 0.00 0.00 1.82
2399 3655 7.927629 AGTGGGCAGCATTATTTACATATTTTG 59.072 33.333 0.00 0.00 0.00 2.44
2511 3849 9.594478 TTCAACAAAGAAACTTAAAATTCCTCC 57.406 29.630 0.00 0.00 0.00 4.30
2513 3851 9.034544 CAACAAAGAAACTTAAAATTCCTCCTG 57.965 33.333 0.00 0.00 0.00 3.86
2567 3921 9.807921 TTTTTACTAAATGAAGGAAGGACAGAT 57.192 29.630 0.00 0.00 0.00 2.90
2570 3924 3.726557 AATGAAGGAAGGACAGATGCA 57.273 42.857 0.00 0.00 0.00 3.96
2611 3966 3.243839 CCTCTCAGCCTCTCTTTCTATGC 60.244 52.174 0.00 0.00 0.00 3.14
2712 4098 0.250424 TGCGTATGGCTCCATCCATG 60.250 55.000 4.41 0.00 45.84 3.66
2713 4099 0.957395 GCGTATGGCTCCATCCATGG 60.957 60.000 4.97 4.97 45.84 3.66
2836 4338 2.038975 TCCGGCTACTGGAAGGCT 59.961 61.111 0.00 0.00 39.30 4.58
2839 4341 1.043673 CCGGCTACTGGAAGGCTACT 61.044 60.000 0.00 0.00 39.30 2.57
2842 4344 1.486211 GCTACTGGAAGGCTACTGGA 58.514 55.000 0.00 0.00 39.30 3.86
2859 4361 1.079405 GAAAGGACCGCGTCATCCA 60.079 57.895 19.73 0.00 37.47 3.41
2892 4397 0.331616 TCCTCATCCGTCTCTGGTCA 59.668 55.000 0.00 0.00 0.00 4.02
2938 4443 2.049433 CTCGTCTTTCACCGCGGT 60.049 61.111 28.70 28.70 0.00 5.68
3041 4551 4.637483 TTGCCAAGCTCTTGCAATATAC 57.363 40.909 11.99 0.00 42.74 1.47
3042 4552 3.889815 TGCCAAGCTCTTGCAATATACT 58.110 40.909 0.00 0.00 42.74 2.12
3045 4555 3.817647 CCAAGCTCTTGCAATATACTCCC 59.182 47.826 0.00 0.00 42.74 4.30
3046 4556 4.445448 CCAAGCTCTTGCAATATACTCCCT 60.445 45.833 0.00 0.00 42.74 4.20
3047 4557 4.615588 AGCTCTTGCAATATACTCCCTC 57.384 45.455 0.00 0.00 42.74 4.30
3048 4558 3.969976 AGCTCTTGCAATATACTCCCTCA 59.030 43.478 0.00 0.00 42.74 3.86
3052 4562 5.211973 TCTTGCAATATACTCCCTCAGTCT 58.788 41.667 0.00 0.00 36.43 3.24
3053 4563 5.303078 TCTTGCAATATACTCCCTCAGTCTC 59.697 44.000 0.00 0.00 36.43 3.36
3054 4564 4.546674 TGCAATATACTCCCTCAGTCTCA 58.453 43.478 0.00 0.00 36.43 3.27
3055 4565 4.962362 TGCAATATACTCCCTCAGTCTCAA 59.038 41.667 0.00 0.00 36.43 3.02
3056 4566 5.425217 TGCAATATACTCCCTCAGTCTCAAA 59.575 40.000 0.00 0.00 36.43 2.69
3057 4567 6.070251 TGCAATATACTCCCTCAGTCTCAAAA 60.070 38.462 0.00 0.00 36.43 2.44
3058 4568 6.995091 GCAATATACTCCCTCAGTCTCAAAAT 59.005 38.462 0.00 0.00 36.43 1.82
3059 4569 8.150945 GCAATATACTCCCTCAGTCTCAAAATA 58.849 37.037 0.00 0.00 36.43 1.40
3062 4572 7.741554 ATACTCCCTCAGTCTCAAAATAAGT 57.258 36.000 0.00 0.00 36.43 2.24
3063 4573 5.799213 ACTCCCTCAGTCTCAAAATAAGTG 58.201 41.667 0.00 0.00 0.00 3.16
3064 4574 5.544176 ACTCCCTCAGTCTCAAAATAAGTGA 59.456 40.000 0.00 0.00 0.00 3.41
3065 4575 5.794894 TCCCTCAGTCTCAAAATAAGTGAC 58.205 41.667 0.00 0.00 0.00 3.67
3066 4576 5.544176 TCCCTCAGTCTCAAAATAAGTGACT 59.456 40.000 0.00 0.00 39.60 3.41
3067 4577 5.872070 CCCTCAGTCTCAAAATAAGTGACTC 59.128 44.000 0.00 0.00 37.64 3.36
3068 4578 6.459066 CCTCAGTCTCAAAATAAGTGACTCA 58.541 40.000 0.00 0.00 37.64 3.41
3069 4579 6.931281 CCTCAGTCTCAAAATAAGTGACTCAA 59.069 38.462 0.00 0.00 37.64 3.02
3070 4580 7.095439 CCTCAGTCTCAAAATAAGTGACTCAAC 60.095 40.741 0.00 0.00 37.64 3.18
3071 4581 7.500992 TCAGTCTCAAAATAAGTGACTCAACT 58.499 34.615 0.00 0.00 37.64 3.16
3072 4582 7.987458 TCAGTCTCAAAATAAGTGACTCAACTT 59.013 33.333 0.00 0.00 42.89 2.66
3073 4583 8.616076 CAGTCTCAAAATAAGTGACTCAACTTT 58.384 33.333 0.00 0.00 40.77 2.66
3074 4584 8.616076 AGTCTCAAAATAAGTGACTCAACTTTG 58.384 33.333 0.00 0.00 40.77 2.77
3075 4585 8.398665 GTCTCAAAATAAGTGACTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
3076 4586 9.607988 TCTCAAAATAAGTGACTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
3077 4587 9.651718 CTCAAAATAAGTGACTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
3078 4588 9.391006 TCAAAATAAGTGACTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
3085 4595 9.530633 AAGTGACTCAACTTTGTACTACTTTAG 57.469 33.333 0.00 0.00 37.05 1.85
3086 4596 8.693625 AGTGACTCAACTTTGTACTACTTTAGT 58.306 33.333 0.00 0.00 42.68 2.24
3087 4597 9.956720 GTGACTCAACTTTGTACTACTTTAGTA 57.043 33.333 0.00 0.00 40.14 1.82
3111 4621 9.918630 GTACAAGGTTAGTATAAAGTTGAGTCA 57.081 33.333 0.00 0.00 0.00 3.41
3112 4622 8.828688 ACAAGGTTAGTATAAAGTTGAGTCAC 57.171 34.615 0.00 0.00 0.00 3.67
3113 4623 8.648693 ACAAGGTTAGTATAAAGTTGAGTCACT 58.351 33.333 0.00 0.00 0.00 3.41
3114 4624 9.490379 CAAGGTTAGTATAAAGTTGAGTCACTT 57.510 33.333 0.00 0.00 38.74 3.16
3123 4633 8.934023 ATAAAGTTGAGTCACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
3124 4634 7.839680 AAAGTTGAGTCACTTATTTTGGGAT 57.160 32.000 0.00 0.00 35.87 3.85
3125 4635 6.824305 AGTTGAGTCACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
3126 4636 6.306987 AGTTGAGTCACTTATTTTGGGATGT 58.693 36.000 0.00 0.00 0.00 3.06
3127 4637 7.458397 AGTTGAGTCACTTATTTTGGGATGTA 58.542 34.615 0.00 0.00 0.00 2.29
3128 4638 7.607991 AGTTGAGTCACTTATTTTGGGATGTAG 59.392 37.037 0.00 0.00 0.00 2.74
3129 4639 6.414732 TGAGTCACTTATTTTGGGATGTAGG 58.585 40.000 0.00 0.00 0.00 3.18
3130 4640 6.214615 TGAGTCACTTATTTTGGGATGTAGGA 59.785 38.462 0.00 0.00 0.00 2.94
3131 4641 7.027874 AGTCACTTATTTTGGGATGTAGGAA 57.972 36.000 0.00 0.00 0.00 3.36
3132 4642 7.112779 AGTCACTTATTTTGGGATGTAGGAAG 58.887 38.462 0.00 0.00 0.00 3.46
3133 4643 6.884836 GTCACTTATTTTGGGATGTAGGAAGT 59.115 38.462 0.00 0.00 0.00 3.01
3134 4644 8.044908 GTCACTTATTTTGGGATGTAGGAAGTA 58.955 37.037 0.00 0.00 0.00 2.24
3135 4645 8.044908 TCACTTATTTTGGGATGTAGGAAGTAC 58.955 37.037 0.00 0.00 0.00 2.73
3136 4646 7.827236 CACTTATTTTGGGATGTAGGAAGTACA 59.173 37.037 0.00 0.00 45.93 2.90
3258 4855 2.554032 CCACAAGAAGAAAGCCGACATT 59.446 45.455 0.00 0.00 0.00 2.71
3313 4910 4.722700 GTGGCATGGCTCACGGGT 62.723 66.667 21.08 0.00 0.00 5.28
3341 4938 1.063027 CGTGAGCGTATCCAACTACGA 59.937 52.381 7.74 0.00 45.64 3.43
3345 4942 3.192001 TGAGCGTATCCAACTACGAAAGT 59.808 43.478 7.74 0.00 45.64 2.66
3346 4943 3.767278 AGCGTATCCAACTACGAAAGTC 58.233 45.455 7.74 0.00 45.64 3.01
3353 4950 9.707269 CGTATCCAACTACGAAAGTCCCTCATT 62.707 44.444 0.00 0.00 45.64 2.57
3358 4955 1.002366 CGAAAGTCCCTCATTCTGCG 58.998 55.000 0.00 0.00 0.00 5.18
3359 4956 1.373570 GAAAGTCCCTCATTCTGCGG 58.626 55.000 0.00 0.00 0.00 5.69
3431 5055 2.770232 TCATGTCCTGTGATCATGAGCT 59.230 45.455 12.92 0.00 41.59 4.09
3440 5064 1.455773 ATCATGAGCTCCCCGACGA 60.456 57.895 12.15 0.00 0.00 4.20
3481 5105 2.332654 AATGTGGACGCTTTCGCCC 61.333 57.895 0.00 0.00 38.81 6.13
3736 5380 1.831389 CGTTGACTCGGGTGCAACAG 61.831 60.000 22.13 0.00 41.34 3.16
3743 5387 2.159043 ACTCGGGTGCAACAGATCATAG 60.159 50.000 4.67 0.00 39.98 2.23
3751 5395 2.039418 CAACAGATCATAGGACCGGGA 58.961 52.381 6.32 0.00 0.00 5.14
3784 5432 1.458020 ACCACTCACCGGTACACCA 60.458 57.895 6.87 0.00 34.02 4.17
3800 5448 2.695666 ACACCAGCTATGATAAGACGCT 59.304 45.455 4.22 0.00 0.00 5.07
3801 5449 3.133003 ACACCAGCTATGATAAGACGCTT 59.867 43.478 4.22 0.00 0.00 4.68
3827 5475 1.065418 ACGGGACAGGAATGGACATTC 60.065 52.381 14.97 14.97 44.82 2.67
3833 5481 3.259064 ACAGGAATGGACATTCGTTACG 58.741 45.455 15.27 0.00 46.11 3.18
3835 5483 3.062099 CAGGAATGGACATTCGTTACGTG 59.938 47.826 15.27 0.00 46.11 4.49
3856 5509 1.133253 CGAAGCGCCACTGTTGATG 59.867 57.895 2.29 0.00 0.00 3.07
3875 5531 6.942532 TGATGCCCATCTAATAAACTTCAC 57.057 37.500 9.44 0.00 38.60 3.18
3900 5556 9.736023 ACCATCTTTCTCGCAAAAATAATTATC 57.264 29.630 0.00 0.00 0.00 1.75
3901 5557 9.185192 CCATCTTTCTCGCAAAAATAATTATCC 57.815 33.333 0.00 0.00 0.00 2.59
3902 5558 9.185192 CATCTTTCTCGCAAAAATAATTATCCC 57.815 33.333 0.00 0.00 0.00 3.85
3903 5559 8.519799 TCTTTCTCGCAAAAATAATTATCCCT 57.480 30.769 0.00 0.00 0.00 4.20
3904 5560 8.621286 TCTTTCTCGCAAAAATAATTATCCCTC 58.379 33.333 0.00 0.00 0.00 4.30
3906 5562 7.496529 TCTCGCAAAAATAATTATCCCTCTG 57.503 36.000 0.00 0.00 0.00 3.35
3907 5563 7.054124 TCTCGCAAAAATAATTATCCCTCTGT 58.946 34.615 0.00 0.00 0.00 3.41
3910 5566 6.515035 CGCAAAAATAATTATCCCTCTGTCCC 60.515 42.308 0.00 0.00 0.00 4.46
3912 5568 7.684428 GCAAAAATAATTATCCCTCTGTCCCAC 60.684 40.741 0.00 0.00 0.00 4.61
3919 5752 7.888514 ATTATCCCTCTGTCCCACAATATAA 57.111 36.000 0.00 0.00 0.00 0.98
3920 5753 5.832539 ATCCCTCTGTCCCACAATATAAG 57.167 43.478 0.00 0.00 0.00 1.73
3922 5755 4.901849 TCCCTCTGTCCCACAATATAAGAG 59.098 45.833 0.00 0.00 0.00 2.85
3923 5756 4.040952 CCCTCTGTCCCACAATATAAGAGG 59.959 50.000 8.54 8.54 45.87 3.69
3924 5757 4.040952 CCTCTGTCCCACAATATAAGAGGG 59.959 50.000 7.76 4.63 43.66 4.30
3926 5759 4.901849 TCTGTCCCACAATATAAGAGGGAG 59.098 45.833 11.86 4.40 44.88 4.30
3929 5762 6.206787 TGTCCCACAATATAAGAGGGAGTAA 58.793 40.000 11.86 1.90 44.88 2.24
3933 5766 9.455144 TCCCACAATATAAGAGGGAGTAATAAA 57.545 33.333 8.59 0.00 40.38 1.40
3973 5826 5.822519 TGATCAGTATATTTCAGGTGCCAAC 59.177 40.000 0.00 0.00 0.00 3.77
3989 5845 5.475564 GGTGCCAACAACTTATTTCCTCTTA 59.524 40.000 0.00 0.00 0.00 2.10
4122 5978 8.256611 TGAAACACTAAATTAGTCTCATGAGC 57.743 34.615 18.36 12.81 36.76 4.26
4191 6048 9.109393 GTAGATGTTGGCACATTTTCTATAGAA 57.891 33.333 11.24 11.24 44.22 2.10
4192 6049 7.989826 AGATGTTGGCACATTTTCTATAGAAC 58.010 34.615 14.85 2.60 44.22 3.01
4216 6073 8.181904 ACTGGTCAAAGATAAACATGTTTGAT 57.818 30.769 29.72 19.31 42.88 2.57
4229 6086 3.110447 TGTTTGATTTTGCAGAAGCCC 57.890 42.857 2.49 0.00 41.13 5.19
4231 6088 3.062042 GTTTGATTTTGCAGAAGCCCAG 58.938 45.455 2.49 0.00 41.13 4.45
4245 6102 6.327934 CAGAAGCCCAGAACTTCAATTATTG 58.672 40.000 0.00 0.00 44.87 1.90
4246 6103 5.420104 AGAAGCCCAGAACTTCAATTATTGG 59.580 40.000 5.02 0.00 44.87 3.16
4252 6109 5.480073 CCAGAACTTCAATTATTGGGGAACA 59.520 40.000 5.02 0.00 0.00 3.18
4259 6116 3.953542 ATTATTGGGGAACAGAGGGAC 57.046 47.619 0.00 0.00 0.00 4.46
4264 6121 2.478292 TGGGGAACAGAGGGACTAATC 58.522 52.381 0.00 0.00 41.55 1.75
4336 6197 3.092301 TCTTCAAGATTCGAGAGAGGCA 58.908 45.455 0.00 0.00 43.69 4.75
4341 6202 5.076182 TCAAGATTCGAGAGAGGCATCTAT 58.924 41.667 0.00 0.00 43.69 1.98
4347 6208 2.426738 CGAGAGAGGCATCTATCCCATC 59.573 54.545 16.61 0.00 40.09 3.51
4348 6209 3.711863 GAGAGAGGCATCTATCCCATCT 58.288 50.000 11.84 0.00 37.75 2.90
4404 6265 2.008329 GATGTCTGCAAGGCTTCTCAG 58.992 52.381 16.01 16.01 41.06 3.35
4405 6266 0.604780 TGTCTGCAAGGCTTCTCAGC 60.605 55.000 16.90 9.96 41.06 4.26
4429 6290 4.224991 TCTCAATGAAGTGGCATCATCA 57.775 40.909 4.17 3.52 36.53 3.07
4448 6309 2.158430 TCACATAGGCCATGCATCCATT 60.158 45.455 5.01 0.00 38.29 3.16
4496 6358 0.331616 GCCCCACCATAAACTGAGGT 59.668 55.000 0.00 0.00 35.65 3.85
4501 6363 3.347216 CCACCATAAACTGAGGTCCTTG 58.653 50.000 0.00 0.00 32.15 3.61
4518 6380 5.705905 GGTCCTTGAAGTTTACAACTAGCAT 59.294 40.000 0.00 0.00 41.91 3.79
4523 6385 1.737793 AGTTTACAACTAGCATGCCGC 59.262 47.619 15.66 0.00 40.69 6.53
4548 6410 7.513968 CAATGAAGTCTCGAAAGGAAACTAAG 58.486 38.462 0.00 0.00 42.68 2.18
4561 6423 6.803154 AGGAAACTAAGAAAAGGTTCGATG 57.197 37.500 0.00 0.00 42.96 3.84
4610 6472 5.335127 CAATGGAAGAGACCAAAATTAGCG 58.665 41.667 0.00 0.00 43.47 4.26
4727 6590 2.353109 GCATGAAGCTCCCAAAACCTTC 60.353 50.000 0.00 0.00 41.15 3.46
4734 6597 3.117512 AGCTCCCAAAACCTTCTTCAGAA 60.118 43.478 0.00 0.00 0.00 3.02
4742 6605 4.489679 AACCTTCTTCAGAATTTGTCGC 57.510 40.909 0.00 0.00 33.01 5.19
4754 6617 2.613026 TTTGTCGCTGAAGAGGTCAA 57.387 45.000 0.00 0.00 35.22 3.18
4759 6622 1.344438 TCGCTGAAGAGGTCAATGTGT 59.656 47.619 0.00 0.00 35.22 3.72
4760 6623 2.560981 TCGCTGAAGAGGTCAATGTGTA 59.439 45.455 0.00 0.00 35.22 2.90
4772 6635 0.108804 AATGTGTAGTCGGTCCTGCG 60.109 55.000 0.00 0.00 0.00 5.18
4783 6646 1.684734 GTCCTGCGGTCTCCCCTTA 60.685 63.158 0.00 0.00 0.00 2.69
4790 6653 1.823976 GGTCTCCCCTTAGGCTTCG 59.176 63.158 0.00 0.00 34.51 3.79
4792 6655 0.747852 GTCTCCCCTTAGGCTTCGAG 59.252 60.000 0.00 0.00 34.51 4.04
4794 6657 1.006758 TCTCCCCTTAGGCTTCGAGAA 59.993 52.381 0.00 0.00 34.51 2.87
4797 6660 1.555533 CCCCTTAGGCTTCGAGAACTT 59.444 52.381 0.00 0.00 0.00 2.66
4804 6667 6.594159 CCTTAGGCTTCGAGAACTTCAATAAA 59.406 38.462 0.00 0.00 0.00 1.40
4805 6668 7.201565 CCTTAGGCTTCGAGAACTTCAATAAAG 60.202 40.741 0.00 0.00 41.08 1.85
4807 6670 4.393371 GGCTTCGAGAACTTCAATAAAGCT 59.607 41.667 13.39 0.00 38.67 3.74
4811 6674 6.282199 TCGAGAACTTCAATAAAGCTACCT 57.718 37.500 0.00 0.00 38.67 3.08
4817 6680 9.011095 AGAACTTCAATAAAGCTACCTTTTACC 57.989 33.333 0.00 0.00 41.37 2.85
4828 6691 5.191722 AGCTACCTTTTACCAATGAGATCCA 59.808 40.000 0.00 0.00 0.00 3.41
4829 6692 6.064717 GCTACCTTTTACCAATGAGATCCAT 58.935 40.000 0.00 0.00 36.99 3.41
4831 6694 5.126067 ACCTTTTACCAATGAGATCCATCG 58.874 41.667 0.00 0.00 33.53 3.84
4856 6719 4.457949 GTGTTTAAACATACACCCCTCCAG 59.542 45.833 23.11 0.00 41.59 3.86
4864 6727 1.197430 ACACCCCTCCAGAAGAGCTG 61.197 60.000 0.00 0.00 41.74 4.24
4890 6753 0.173481 ACGATGTCCATCACGACCAG 59.827 55.000 7.94 0.00 37.69 4.00
4911 6774 0.929824 CAAGTGTCGCAAAGCCAACG 60.930 55.000 0.00 0.00 0.00 4.10
4941 6804 1.482593 CTCCTATCCTTGCCACTCGTT 59.517 52.381 0.00 0.00 0.00 3.85
4944 6807 1.482593 CTATCCTTGCCACTCGTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
4945 6808 0.036010 ATCCTTGCCACTCGTTCCTG 60.036 55.000 0.00 0.00 0.00 3.86
4972 6837 5.130292 AGTTGATGAAATCTGCAAACCAG 57.870 39.130 0.00 0.00 45.81 4.00
4979 6844 4.659172 CTGCAAACCAGGCCGGGA 62.659 66.667 30.18 4.28 40.22 5.14
4994 6859 4.504596 GGATCCATGCGCACCCCA 62.505 66.667 14.90 0.00 0.00 4.96
5004 6869 1.152984 CGCACCCCATTGCCTCATA 60.153 57.895 0.00 0.00 39.53 2.15
5016 6881 6.296317 CCCATTGCCTCATAGATATCACTCTT 60.296 42.308 5.32 0.00 0.00 2.85
5018 6883 6.983906 TTGCCTCATAGATATCACTCTTCA 57.016 37.500 5.32 0.00 0.00 3.02
5038 6904 9.713740 CTCTTCAAAAATCTTGCTATGATACAC 57.286 33.333 0.00 0.00 0.00 2.90
5042 6908 6.382869 AAAATCTTGCTATGATACACCAGC 57.617 37.500 0.00 0.00 34.56 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.771356 TAGCTCGCGACGCACCAC 62.771 66.667 25.12 5.84 0.00 4.16
26 27 2.639926 GCGTACATGCTAGCTCGCG 61.640 63.158 17.23 13.56 34.88 5.87
38 39 9.283420 CAATATGTATTTGTTTGAATGCGTACA 57.717 29.630 0.00 0.00 29.78 2.90
54 62 7.436376 CGATACGATGCCTGATCAATATGTATT 59.564 37.037 0.00 0.00 0.00 1.89
67 75 2.051879 AACGATCGATACGATGCCTG 57.948 50.000 24.34 2.07 47.00 4.85
68 76 2.293677 AGAAACGATCGATACGATGCCT 59.706 45.455 24.34 2.57 47.00 4.75
148 163 1.432514 TCATCGTTTCAGCTCAGCAC 58.567 50.000 0.00 0.00 0.00 4.40
153 168 4.161333 CAATGGTTTCATCGTTTCAGCTC 58.839 43.478 0.00 0.00 32.24 4.09
213 228 3.547746 TCCGATAATTAAAGGTGGTGGC 58.452 45.455 8.77 0.00 0.00 5.01
215 230 6.346096 TCTTCTCCGATAATTAAAGGTGGTG 58.654 40.000 8.77 4.93 0.00 4.17
227 257 5.860611 TGTTGTTCCTTTCTTCTCCGATAA 58.139 37.500 0.00 0.00 0.00 1.75
229 259 4.202367 ACTGTTGTTCCTTTCTTCTCCGAT 60.202 41.667 0.00 0.00 0.00 4.18
274 341 8.547069 CCGTTTTCAAAAAGCAAAATCTATCAA 58.453 29.630 0.00 0.00 0.00 2.57
283 350 3.680458 GTGTCCCGTTTTCAAAAAGCAAA 59.320 39.130 0.00 0.00 0.00 3.68
284 351 3.254892 GTGTCCCGTTTTCAAAAAGCAA 58.745 40.909 0.00 0.00 0.00 3.91
285 352 2.231478 TGTGTCCCGTTTTCAAAAAGCA 59.769 40.909 0.00 0.00 0.00 3.91
286 353 2.882324 TGTGTCCCGTTTTCAAAAAGC 58.118 42.857 0.00 0.00 0.00 3.51
287 354 4.677584 TCATGTGTCCCGTTTTCAAAAAG 58.322 39.130 0.00 0.00 0.00 2.27
288 355 4.720649 TCATGTGTCCCGTTTTCAAAAA 57.279 36.364 0.00 0.00 0.00 1.94
289 356 4.927978 ATCATGTGTCCCGTTTTCAAAA 57.072 36.364 0.00 0.00 0.00 2.44
290 357 5.309638 TCTATCATGTGTCCCGTTTTCAAA 58.690 37.500 0.00 0.00 0.00 2.69
291 358 4.900684 TCTATCATGTGTCCCGTTTTCAA 58.099 39.130 0.00 0.00 0.00 2.69
292 359 4.545208 TCTATCATGTGTCCCGTTTTCA 57.455 40.909 0.00 0.00 0.00 2.69
293 360 7.730364 AATATCTATCATGTGTCCCGTTTTC 57.270 36.000 0.00 0.00 0.00 2.29
294 361 9.436957 GATAATATCTATCATGTGTCCCGTTTT 57.563 33.333 0.00 0.00 0.00 2.43
295 362 8.593679 TGATAATATCTATCATGTGTCCCGTTT 58.406 33.333 1.66 0.00 0.00 3.60
296 363 8.134202 TGATAATATCTATCATGTGTCCCGTT 57.866 34.615 1.66 0.00 0.00 4.44
297 364 7.718334 TGATAATATCTATCATGTGTCCCGT 57.282 36.000 1.66 0.00 0.00 5.28
386 463 4.978083 AGGAACGTACGTGTATCTTCAT 57.022 40.909 23.57 9.34 0.00 2.57
388 465 3.302699 GCAAGGAACGTACGTGTATCTTC 59.697 47.826 23.57 14.12 0.00 2.87
389 466 3.057033 AGCAAGGAACGTACGTGTATCTT 60.057 43.478 23.57 18.31 0.00 2.40
427 504 4.398319 AGCTGGGGATTTAATTATGGACG 58.602 43.478 0.00 0.00 0.00 4.79
453 573 1.526575 AAGCAACCAACGGAGGCATG 61.527 55.000 0.00 0.00 0.00 4.06
477 600 2.654877 GCATGGTGCTTGCTGCTT 59.345 55.556 0.00 0.00 40.96 3.91
521 644 9.589111 TGCAAGTAAGTTTATATGATCGTACAA 57.411 29.630 0.00 0.00 0.00 2.41
536 661 6.626302 TGTTAGTTTTGCTTGCAAGTAAGTT 58.374 32.000 25.63 18.19 32.29 2.66
555 680 3.299340 AGTACGTGTCTGGCTTGTTAG 57.701 47.619 0.00 0.00 0.00 2.34
586 731 5.935945 TCTCTCCAAGATATCTTCTCTCGT 58.064 41.667 15.24 0.00 33.11 4.18
593 738 7.293299 TCTCTCTCTCTCTCTCCAAGATATCTT 59.707 40.741 12.37 12.37 36.45 2.40
599 744 4.721274 TCATCTCTCTCTCTCTCTCCAAGA 59.279 45.833 0.00 0.00 0.00 3.02
600 745 5.039920 TCATCTCTCTCTCTCTCTCCAAG 57.960 47.826 0.00 0.00 0.00 3.61
602 747 4.659835 TCATCATCTCTCTCTCTCTCTCCA 59.340 45.833 0.00 0.00 0.00 3.86
603 748 5.233083 TCATCATCTCTCTCTCTCTCTCC 57.767 47.826 0.00 0.00 0.00 3.71
646 1183 3.132824 CACACTCCACATATAGTCCAGCA 59.867 47.826 0.00 0.00 0.00 4.41
648 1185 5.302823 TCATCACACTCCACATATAGTCCAG 59.697 44.000 0.00 0.00 0.00 3.86
649 1186 5.208121 TCATCACACTCCACATATAGTCCA 58.792 41.667 0.00 0.00 0.00 4.02
650 1187 5.791336 TCATCACACTCCACATATAGTCC 57.209 43.478 0.00 0.00 0.00 3.85
689 1231 4.517934 CATCAGCCAGGGCCCAGG 62.518 72.222 28.81 28.81 43.17 4.45
692 1234 2.572333 TTTAGCATCAGCCAGGGCCC 62.572 60.000 16.46 16.46 43.56 5.80
693 1235 0.468771 ATTTAGCATCAGCCAGGGCC 60.469 55.000 6.70 0.00 43.56 5.80
719 1261 2.093500 ACATATGTGGCACTGTCGACAT 60.093 45.455 20.40 6.69 38.59 3.06
720 1262 1.275010 ACATATGTGGCACTGTCGACA 59.725 47.619 18.88 18.88 0.00 4.35
748 1290 1.123928 GAGGGGGAGTAGGTGATGTG 58.876 60.000 0.00 0.00 0.00 3.21
756 1298 0.938192 AGGGAGAAGAGGGGGAGTAG 59.062 60.000 0.00 0.00 0.00 2.57
757 1299 1.858246 GTAGGGAGAAGAGGGGGAGTA 59.142 57.143 0.00 0.00 0.00 2.59
758 1300 0.637743 GTAGGGAGAAGAGGGGGAGT 59.362 60.000 0.00 0.00 0.00 3.85
759 1301 0.105401 GGTAGGGAGAAGAGGGGGAG 60.105 65.000 0.00 0.00 0.00 4.30
760 1302 0.557907 AGGTAGGGAGAAGAGGGGGA 60.558 60.000 0.00 0.00 0.00 4.81
776 1380 2.575455 CTAGGTCGCTGGAGGGAGGT 62.575 65.000 0.00 0.00 37.69 3.85
796 1400 3.423536 CAGCATGAACTCGATCGATGTAC 59.576 47.826 19.78 10.93 39.69 2.90
797 1401 3.632189 CAGCATGAACTCGATCGATGTA 58.368 45.455 19.78 6.13 39.69 2.29
936 1560 2.440409 CCAGCAATGGAGCAAGTACTT 58.560 47.619 1.12 1.12 36.85 2.24
1040 1673 2.955022 TACCCTCTAGCTCGACCGGC 62.955 65.000 0.00 0.00 0.00 6.13
1212 1858 6.491403 AGCTTGAGTTTGTATGAATGAGGTTT 59.509 34.615 0.00 0.00 0.00 3.27
1263 1929 9.869667 AGAAAGTATCTAGGTAGCAGAGATTAA 57.130 33.333 12.81 0.00 36.32 1.40
1386 2120 7.978975 GCTCAACTCTCTCTACAATCTGTATTT 59.021 37.037 0.00 0.00 31.66 1.40
1417 2159 4.396357 TCTTCTCTCTGAACCCTCTTCT 57.604 45.455 0.00 0.00 0.00 2.85
1462 2218 1.152777 CCGCAGCCCCATGGAAATA 60.153 57.895 15.22 0.00 0.00 1.40
1574 2330 3.706373 GGCTCCTCCGGTGAAGCA 61.706 66.667 16.84 0.00 0.00 3.91
1707 2473 9.490379 ACTGTGGTAATTGAGTAGTAAGAAAAG 57.510 33.333 0.00 0.00 0.00 2.27
1764 2534 6.311690 GTCGAGTACTCCGTAGTAAACTAACT 59.688 42.308 17.23 0.00 39.90 2.24
1770 2540 3.270877 GGGTCGAGTACTCCGTAGTAAA 58.729 50.000 17.23 0.00 39.90 2.01
1819 2597 5.395682 AGATCGATCGAGTAGCTAGTAGT 57.604 43.478 23.84 1.18 0.00 2.73
1943 2925 3.335579 ACAAGTCCGAATTAGAGCCAAC 58.664 45.455 0.00 0.00 0.00 3.77
1966 2952 9.632807 TTTGGTGCACTAATCAATAATAACAAC 57.367 29.630 16.93 0.00 0.00 3.32
2003 2992 2.434702 AGCCTAATAAACCCAGACGGAG 59.565 50.000 0.00 0.00 34.64 4.63
2116 3105 9.673454 AAACTAACATTATTGAAAACCTCGTTC 57.327 29.630 0.00 0.00 0.00 3.95
2213 3202 5.727434 AGTAACTCCGTCGGATTTTATTGT 58.273 37.500 20.41 8.10 0.00 2.71
2214 3203 6.976925 ACTAGTAACTCCGTCGGATTTTATTG 59.023 38.462 20.41 12.90 0.00 1.90
2398 3654 5.475564 GCCAGTTCCTTAACTAATCCAAACA 59.524 40.000 0.00 0.00 44.28 2.83
2399 3655 5.710567 AGCCAGTTCCTTAACTAATCCAAAC 59.289 40.000 0.00 0.00 44.28 2.93
2439 3704 3.074538 AGGGGGTGGAATAATGCTGATAC 59.925 47.826 0.00 0.00 0.00 2.24
2596 3950 1.656652 TTGCGCATAGAAAGAGAGGC 58.343 50.000 12.75 0.00 0.00 4.70
2611 3966 5.733226 TCATATCAGGTTGTACAATTGCG 57.267 39.130 12.26 1.50 0.00 4.85
2711 4097 1.295101 CGTCTGCATACCACCACCA 59.705 57.895 0.00 0.00 0.00 4.17
2712 4098 1.019278 CACGTCTGCATACCACCACC 61.019 60.000 0.00 0.00 0.00 4.61
2713 4099 1.019278 CCACGTCTGCATACCACCAC 61.019 60.000 0.00 0.00 0.00 4.16
2758 4260 1.872237 CGGTCACGGAAGCTGAAGAAA 60.872 52.381 0.00 0.00 36.18 2.52
2836 4338 1.180456 TGACGCGGTCCTTTCCAGTA 61.180 55.000 12.47 0.00 0.00 2.74
2839 4341 1.079405 GATGACGCGGTCCTTTCCA 60.079 57.895 12.47 0.00 0.00 3.53
2842 4344 1.375523 GTGGATGACGCGGTCCTTT 60.376 57.895 22.29 0.00 35.49 3.11
2859 4361 4.680537 AGGACGACCTCGGGCTGT 62.681 66.667 0.00 0.00 44.13 4.40
3041 4551 5.872070 GTCACTTATTTTGAGACTGAGGGAG 59.128 44.000 0.00 0.00 0.00 4.30
3042 4552 5.544176 AGTCACTTATTTTGAGACTGAGGGA 59.456 40.000 0.00 0.00 38.08 4.20
3045 4555 7.655328 AGTTGAGTCACTTATTTTGAGACTGAG 59.345 37.037 0.00 0.00 39.47 3.35
3046 4556 7.500992 AGTTGAGTCACTTATTTTGAGACTGA 58.499 34.615 0.00 0.00 39.47 3.41
3047 4557 7.721286 AGTTGAGTCACTTATTTTGAGACTG 57.279 36.000 0.00 0.00 39.47 3.51
3048 4558 8.616076 CAAAGTTGAGTCACTTATTTTGAGACT 58.384 33.333 5.72 0.00 41.84 3.24
3052 4562 9.391006 AGTACAAAGTTGAGTCACTTATTTTGA 57.609 29.630 14.62 1.37 35.87 2.69
3059 4569 9.530633 CTAAAGTAGTACAAAGTTGAGTCACTT 57.469 33.333 2.52 0.00 38.74 3.16
3060 4570 8.693625 ACTAAAGTAGTACAAAGTTGAGTCACT 58.306 33.333 2.52 0.00 37.23 3.41
3061 4571 8.868635 ACTAAAGTAGTACAAAGTTGAGTCAC 57.131 34.615 2.52 0.00 37.23 3.67
3085 4595 9.918630 TGACTCAACTTTATACTAACCTTGTAC 57.081 33.333 0.00 0.00 0.00 2.90
3086 4596 9.918630 GTGACTCAACTTTATACTAACCTTGTA 57.081 33.333 0.00 0.00 0.00 2.41
3087 4597 8.648693 AGTGACTCAACTTTATACTAACCTTGT 58.351 33.333 0.00 0.00 0.00 3.16
3088 4598 9.490379 AAGTGACTCAACTTTATACTAACCTTG 57.510 33.333 0.00 0.00 37.05 3.61
3098 4608 8.934023 TCCCAAAATAAGTGACTCAACTTTAT 57.066 30.769 0.00 0.00 40.77 1.40
3099 4609 8.792633 CATCCCAAAATAAGTGACTCAACTTTA 58.207 33.333 0.00 0.00 40.77 1.85
3100 4610 7.287696 ACATCCCAAAATAAGTGACTCAACTTT 59.712 33.333 0.00 0.00 40.77 2.66
3101 4611 6.777580 ACATCCCAAAATAAGTGACTCAACTT 59.222 34.615 0.00 0.00 42.89 2.66
3102 4612 6.306987 ACATCCCAAAATAAGTGACTCAACT 58.693 36.000 0.00 0.00 0.00 3.16
3103 4613 6.575162 ACATCCCAAAATAAGTGACTCAAC 57.425 37.500 0.00 0.00 0.00 3.18
3104 4614 6.884295 CCTACATCCCAAAATAAGTGACTCAA 59.116 38.462 0.00 0.00 0.00 3.02
3105 4615 6.214615 TCCTACATCCCAAAATAAGTGACTCA 59.785 38.462 0.00 0.00 0.00 3.41
3106 4616 6.650120 TCCTACATCCCAAAATAAGTGACTC 58.350 40.000 0.00 0.00 0.00 3.36
3107 4617 6.636454 TCCTACATCCCAAAATAAGTGACT 57.364 37.500 0.00 0.00 0.00 3.41
3108 4618 6.884836 ACTTCCTACATCCCAAAATAAGTGAC 59.115 38.462 0.00 0.00 0.00 3.67
3109 4619 7.027874 ACTTCCTACATCCCAAAATAAGTGA 57.972 36.000 0.00 0.00 0.00 3.41
3110 4620 7.827236 TGTACTTCCTACATCCCAAAATAAGTG 59.173 37.037 0.00 0.00 29.73 3.16
3111 4621 7.924541 TGTACTTCCTACATCCCAAAATAAGT 58.075 34.615 0.00 0.00 29.73 2.24
3112 4622 8.980481 ATGTACTTCCTACATCCCAAAATAAG 57.020 34.615 0.00 0.00 41.56 1.73
3124 4634 7.231519 CAGATACCATCAGATGTACTTCCTACA 59.768 40.741 9.64 0.00 39.78 2.74
3125 4635 7.448777 TCAGATACCATCAGATGTACTTCCTAC 59.551 40.741 9.64 0.00 0.00 3.18
3126 4636 7.526918 TCAGATACCATCAGATGTACTTCCTA 58.473 38.462 9.64 0.00 0.00 2.94
3127 4637 6.377080 TCAGATACCATCAGATGTACTTCCT 58.623 40.000 9.64 0.00 0.00 3.36
3128 4638 6.266558 ACTCAGATACCATCAGATGTACTTCC 59.733 42.308 9.64 0.00 0.00 3.46
3129 4639 7.283625 ACTCAGATACCATCAGATGTACTTC 57.716 40.000 9.64 0.50 0.00 3.01
3130 4640 8.948401 ATACTCAGATACCATCAGATGTACTT 57.052 34.615 9.64 0.00 0.00 2.24
3131 4641 8.948401 AATACTCAGATACCATCAGATGTACT 57.052 34.615 9.64 0.77 0.00 2.73
3258 4855 2.889617 CCGTCCATGGCGTACTCA 59.110 61.111 21.61 0.00 0.00 3.41
3297 4894 4.408821 GACCCGTGAGCCATGCCA 62.409 66.667 0.00 0.00 0.00 4.92
3313 4910 2.613739 GATACGCTCACGGCAGCAGA 62.614 60.000 0.00 0.00 46.04 4.26
3329 4926 4.346730 TGAGGGACTTTCGTAGTTGGATA 58.653 43.478 0.00 0.00 41.55 2.59
3394 5018 2.511218 ACATGATCTGGTAATGGTGGCT 59.489 45.455 0.00 0.00 0.00 4.75
3449 5073 1.010935 CACATTGCTGAGCGAGACGT 61.011 55.000 0.00 0.00 0.00 4.34
3499 5123 5.810587 TCAAGTCAATGATACTTTCGTAGCC 59.189 40.000 0.00 0.00 34.99 3.93
3516 5140 0.250467 GGAGTTGCTGGCTCAAGTCA 60.250 55.000 20.86 0.00 44.28 3.41
3522 5146 2.045536 CCCTGGAGTTGCTGGCTC 60.046 66.667 0.00 0.00 0.00 4.70
3666 5310 2.045926 GCAGCACCCACCGATCTT 60.046 61.111 0.00 0.00 0.00 2.40
3727 5371 2.565841 GGTCCTATGATCTGTTGCACC 58.434 52.381 0.00 0.00 0.00 5.01
3736 5380 1.343069 AGCTTCCCGGTCCTATGATC 58.657 55.000 0.00 0.00 0.00 2.92
3743 5387 0.175989 CTTGTCTAGCTTCCCGGTCC 59.824 60.000 0.00 0.00 0.00 4.46
3784 5432 3.895656 TGGGTAAGCGTCTTATCATAGCT 59.104 43.478 10.61 0.00 40.20 3.32
3800 5448 1.003812 CATTCCTGTCCCGTTGGGTAA 59.996 52.381 1.04 0.00 44.74 2.85
3801 5449 0.616371 CATTCCTGTCCCGTTGGGTA 59.384 55.000 1.04 0.00 44.74 3.69
3817 5465 3.609373 CGTACACGTAACGAATGTCCATT 59.391 43.478 15.37 0.00 42.90 3.16
3827 5475 1.334855 GCGCTTCGTACACGTAACG 59.665 57.895 14.54 14.54 41.64 3.18
3833 5481 1.219522 AACAGTGGCGCTTCGTACAC 61.220 55.000 7.64 5.64 37.22 2.90
3835 5483 0.942410 TCAACAGTGGCGCTTCGTAC 60.942 55.000 7.64 0.00 0.00 3.67
3856 5509 6.064717 AGATGGTGAAGTTTATTAGATGGGC 58.935 40.000 0.00 0.00 0.00 5.36
3875 5531 9.185192 GGATAATTATTTTTGCGAGAAAGATGG 57.815 33.333 0.00 0.00 0.00 3.51
3900 5556 4.040952 CCTCTTATATTGTGGGACAGAGGG 59.959 50.000 4.64 0.00 41.80 4.30
3901 5557 4.040952 CCCTCTTATATTGTGGGACAGAGG 59.959 50.000 5.48 5.48 41.80 3.69
3902 5558 4.901849 TCCCTCTTATATTGTGGGACAGAG 59.098 45.833 11.76 0.00 41.80 3.35
3903 5559 4.890988 TCCCTCTTATATTGTGGGACAGA 58.109 43.478 11.76 0.00 41.80 3.41
3904 5560 4.656112 ACTCCCTCTTATATTGTGGGACAG 59.344 45.833 11.76 7.93 41.80 3.51
3906 5562 6.742559 TTACTCCCTCTTATATTGTGGGAC 57.257 41.667 11.76 0.00 40.90 4.46
3907 5563 9.455144 TTTATTACTCCCTCTTATATTGTGGGA 57.545 33.333 13.90 13.90 42.77 4.37
3912 5568 9.793259 TGCCTTTTATTACTCCCTCTTATATTG 57.207 33.333 0.00 0.00 0.00 1.90
3919 5752 7.691993 TTAGATGCCTTTTATTACTCCCTCT 57.308 36.000 0.00 0.00 0.00 3.69
3920 5753 8.747538 TTTTAGATGCCTTTTATTACTCCCTC 57.252 34.615 0.00 0.00 0.00 4.30
3954 5807 5.570320 AGTTGTTGGCACCTGAAATATACT 58.430 37.500 0.00 0.00 0.00 2.12
3964 5817 3.826729 GAGGAAATAAGTTGTTGGCACCT 59.173 43.478 0.00 0.00 0.00 4.00
3989 5845 8.797350 AACGTGGGTATAGTAATTAAGCTTTT 57.203 30.769 3.20 0.00 0.00 2.27
4151 6007 8.530311 TGCCAACATCTACAAAATCAAATACAT 58.470 29.630 0.00 0.00 0.00 2.29
4160 6016 7.444299 AGAAAATGTGCCAACATCTACAAAAT 58.556 30.769 0.00 0.00 46.58 1.82
4191 6048 7.581213 TCAAACATGTTTATCTTTGACCAGT 57.419 32.000 22.87 0.00 29.75 4.00
4192 6049 9.480053 AAATCAAACATGTTTATCTTTGACCAG 57.520 29.630 22.87 6.98 35.14 4.00
4209 6066 2.433604 TGGGCTTCTGCAAAATCAAACA 59.566 40.909 0.00 0.00 41.91 2.83
4216 6073 2.071778 AGTTCTGGGCTTCTGCAAAA 57.928 45.000 0.00 0.00 41.91 2.44
4229 6086 6.434028 TCTGTTCCCCAATAATTGAAGTTCTG 59.566 38.462 4.17 0.00 0.00 3.02
4231 6088 6.127619 CCTCTGTTCCCCAATAATTGAAGTTC 60.128 42.308 0.00 0.00 0.00 3.01
4245 6102 2.436173 CTGATTAGTCCCTCTGTTCCCC 59.564 54.545 0.00 0.00 0.00 4.81
4246 6103 2.436173 CCTGATTAGTCCCTCTGTTCCC 59.564 54.545 0.00 0.00 0.00 3.97
4252 6109 5.149584 TGAGAATCCTGATTAGTCCCTCT 57.850 43.478 0.00 0.00 0.00 3.69
4336 6197 1.646447 TCGGGGCTAGATGGGATAGAT 59.354 52.381 0.00 0.00 0.00 1.98
4341 6202 1.081481 TCTATCGGGGCTAGATGGGA 58.919 55.000 0.00 2.46 0.00 4.37
4347 6208 4.815269 CTGAAGAAATCTATCGGGGCTAG 58.185 47.826 0.00 0.00 0.00 3.42
4348 6209 3.006967 GCTGAAGAAATCTATCGGGGCTA 59.993 47.826 0.00 0.00 0.00 3.93
4391 6252 1.401199 GAGATTGCTGAGAAGCCTTGC 59.599 52.381 0.00 0.00 0.00 4.01
4404 6265 3.129813 TGATGCCACTTCATTGAGATTGC 59.870 43.478 0.00 0.00 0.00 3.56
4405 6266 4.976224 TGATGCCACTTCATTGAGATTG 57.024 40.909 0.00 0.00 0.00 2.67
4429 6290 2.158430 TCAATGGATGCATGGCCTATGT 60.158 45.455 2.46 0.00 39.08 2.29
4518 6380 0.320334 TTCGAGACTTCATTGCGGCA 60.320 50.000 0.00 0.00 0.00 5.69
4523 6385 5.931441 AGTTTCCTTTCGAGACTTCATTG 57.069 39.130 0.00 0.00 32.04 2.82
4548 6410 2.476185 CGACCATGCATCGAACCTTTTC 60.476 50.000 11.08 0.00 42.25 2.29
4610 6472 3.920412 GGGCATCGTTTTGTCTTTGATTC 59.080 43.478 0.00 0.00 0.00 2.52
4654 6517 1.672356 CTTCCTGTCCGGTGCAAGG 60.672 63.158 0.00 4.71 0.00 3.61
4734 6597 2.839486 TGACCTCTTCAGCGACAAAT 57.161 45.000 0.00 0.00 0.00 2.32
4742 6605 4.169508 CGACTACACATTGACCTCTTCAG 58.830 47.826 0.00 0.00 34.94 3.02
4754 6617 1.511305 CGCAGGACCGACTACACAT 59.489 57.895 0.00 0.00 0.00 3.21
4781 6644 6.092259 GCTTTATTGAAGTTCTCGAAGCCTAA 59.908 38.462 16.19 0.00 37.69 2.69
4783 6646 4.393371 GCTTTATTGAAGTTCTCGAAGCCT 59.607 41.667 16.19 0.00 37.69 4.58
4792 6655 8.789762 TGGTAAAAGGTAGCTTTATTGAAGTTC 58.210 33.333 19.61 0.00 37.69 3.01
4794 6657 8.700439 TTGGTAAAAGGTAGCTTTATTGAAGT 57.300 30.769 19.61 5.65 37.69 3.01
4797 6660 8.871629 TCATTGGTAAAAGGTAGCTTTATTGA 57.128 30.769 19.61 12.54 0.00 2.57
4804 6667 5.191722 TGGATCTCATTGGTAAAAGGTAGCT 59.808 40.000 0.00 0.00 0.00 3.32
4805 6668 5.437060 TGGATCTCATTGGTAAAAGGTAGC 58.563 41.667 0.00 0.00 0.00 3.58
4807 6670 6.288294 CGATGGATCTCATTGGTAAAAGGTA 58.712 40.000 0.00 0.00 35.97 3.08
4817 6680 2.627515 ACACCCGATGGATCTCATTG 57.372 50.000 0.00 0.00 35.97 2.82
4849 6712 0.255318 AATGCAGCTCTTCTGGAGGG 59.745 55.000 0.00 0.00 46.46 4.30
4856 6719 2.932614 ACATCGTGTAATGCAGCTCTTC 59.067 45.455 0.00 0.00 0.00 2.87
4864 6727 2.033747 CGTGATGGACATCGTGTAATGC 60.034 50.000 7.70 0.00 40.63 3.56
4890 6753 2.050077 GGCTTTGCGACACTTGCC 60.050 61.111 0.00 0.00 0.00 4.52
4911 6774 0.182299 AGGATAGGAGGCTTGCTTGC 59.818 55.000 0.00 0.00 0.00 4.01
4941 6804 5.413833 GCAGATTTCATCAACTTCTTCAGGA 59.586 40.000 0.00 0.00 0.00 3.86
4944 6807 6.638096 TTGCAGATTTCATCAACTTCTTCA 57.362 33.333 0.00 0.00 0.00 3.02
4945 6808 6.364435 GGTTTGCAGATTTCATCAACTTCTTC 59.636 38.462 0.00 0.00 0.00 2.87
4979 6844 2.129146 CAATGGGGTGCGCATGGAT 61.129 57.895 15.91 0.20 37.12 3.41
4994 6859 7.550597 TGAAGAGTGATATCTATGAGGCAAT 57.449 36.000 3.98 0.00 0.00 3.56
5004 6869 8.804912 AGCAAGATTTTTGAAGAGTGATATCT 57.195 30.769 3.98 0.00 0.00 1.98
5016 6881 7.415541 GCTGGTGTATCATAGCAAGATTTTTGA 60.416 37.037 0.00 0.00 36.24 2.69
5018 6883 6.377996 TGCTGGTGTATCATAGCAAGATTTTT 59.622 34.615 0.00 0.00 42.60 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.