AutoCloner

Multiple sequence alignment - TraesCS6B01G416100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G416100	chr6B	100.000	3892	0	0	1	3892	688468555	688472446	0.000000e+00	7188.0
1	TraesCS6B01G416100	chr6B	89.888	1701	140	18	1958	3650	689032394	689030718	0.000000e+00	2159.0
2	TraesCS6B01G416100	chr6B	90.869	679	43	11	1262	1923	689033192	689032516	0.000000e+00	893.0
3	TraesCS6B01G416100	chr6B	88.014	584	40	15	657	1217	689033762	689033186	0.000000e+00	664.0
4	TraesCS6B01G416100	chr6B	96.970	33	1	0	1540	1572	367268654	367268686	5.430000e-04	56.5
5	TraesCS6B01G416100	chr6D	96.263	1231	41	2	1961	3190	453651453	453650227	0.000000e+00	2013.0
6	TraesCS6B01G416100	chr6D	89.425	1305	73	33	651	1926	453652855	453651587	0.000000e+00	1585.0
7	TraesCS6B01G416100	chr6D	95.524	715	28	3	3182	3892	453648798	453648084	0.000000e+00	1140.0
8	TraesCS6B01G416100	chr6A	93.695	1253	67	4	1958	3210	599830982	599829742	0.000000e+00	1866.0
9	TraesCS6B01G416100	chr6A	90.454	1299	74	28	652	1919	599832384	599831105	0.000000e+00	1666.0
10	TraesCS6B01G416100	chr3B	90.744	659	47	11	1	652	693782644	693781993	0.000000e+00	867.0
11	TraesCS6B01G416100	chr3B	89.226	659	57	11	1	651	362622124	362621472	0.000000e+00	811.0
12	TraesCS6B01G416100	chr3B	80.941	425	73	8	1099	1519	413865901	413865481	2.900000e-86	329.0
13	TraesCS6B01G416100	chr3B	77.615	478	97	9	1047	1519	413969610	413970082	8.230000e-72	281.0
14	TraesCS6B01G416100	chr3B	100.000	31	0	0	1544	1574	283360416	283360386	1.510000e-04	58.4
15	TraesCS6B01G416100	chr3B	100.000	31	0	0	1544	1574	283376030	283376000	1.510000e-04	58.4
16	TraesCS6B01G416100	chr2D	89.489	666	57	9	1	657	623632417	623631756	0.000000e+00	830.0
17	TraesCS6B01G416100	chr2D	96.970	33	1	0	1540	1572	11557292	11557260	5.430000e-04	56.5
18	TraesCS6B01G416100	chr4A	89.177	656	60	9	1	651	669634312	669634961	0.000000e+00	808.0
19	TraesCS6B01G416100	chr4A	88.805	661	51	16	1	651	737048846	737048199	0.000000e+00	789.0
20	TraesCS6B01G416100	chr4B	89.177	656	54	14	1	649	170976906	170977551	0.000000e+00	802.0
21	TraesCS6B01G416100	chr4B	88.805	661	53	15	1	651	302700836	302701485	0.000000e+00	791.0
22	TraesCS6B01G416100	chr2B	88.839	663	59	11	1	651	780527843	780527184	0.000000e+00	800.0
23	TraesCS6B01G416100	chr2B	96.970	33	1	0	1541	1573	793154535	793154567	5.430000e-04	56.5
24	TraesCS6B01G416100	chr7B	88.838	654	62	10	1	649	728430288	728430935	0.000000e+00	793.0
25	TraesCS6B01G416100	chr3D	78.357	901	184	10	1997	2888	307881621	307882519	1.210000e-159	573.0
26	TraesCS6B01G416100	chr3D	77.248	901	174	26	2001	2883	610805033	610804146	2.090000e-137	499.0
27	TraesCS6B01G416100	chr3D	80.615	423	78	4	1099	1519	307880108	307880528	1.350000e-84	324.0
28	TraesCS6B01G416100	chr3D	77.406	478	98	9	1047	1519	307796153	307795681	3.830000e-70	276.0
29	TraesCS6B01G416100	chr3A	77.137	901	195	10	1997	2888	427193147	427194045	2.680000e-141	512.0
30	TraesCS6B01G416100	chr3A	80.471	425	75	8	1099	1519	427191638	427192058	6.280000e-83	318.0
31	TraesCS6B01G416100	chr3A	78.033	478	95	9	1047	1519	427092793	427092321	3.800000e-75	292.0
32	TraesCS6B01G416100	chr5D	81.905	105	19	0	1728	1832	506158752	506158856	5.360000e-14	89.8
33	TraesCS6B01G416100	chr5D	100.000	30	0	0	1544	1573	518762745	518762716	5.430000e-04	56.5
34	TraesCS6B01G416100	chr5B	83.721	86	14	0	1729	1814	636895917	636896002	8.960000e-12	82.4
35	TraesCS6B01G416100	chr1D	97.059	34	1	0	1540	1573	265533198	265533231	1.510000e-04	58.4
36	TraesCS6B01G416100	chr2A	100.000	30	0	0	1544	1573	761068388	761068359	5.430000e-04	56.5
37	TraesCS6B01G416100	chr1B	100.000	30	0	0	1544	1573	625931398	625931369	5.430000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G416100	chr6B	688468555	688472446	3891	False	7188.000000	7188	100.000000	1	3892	1	chr6B.!!$F2	3891
1	TraesCS6B01G416100	chr6B	689030718	689033762	3044	True	1238.666667	2159	89.590333	657	3650	3	chr6B.!!$R1	2993
2	TraesCS6B01G416100	chr6D	453648084	453652855	4771	True	1579.333333	2013	93.737333	651	3892	3	chr6D.!!$R1	3241
3	TraesCS6B01G416100	chr6A	599829742	599832384	2642	True	1766.000000	1866	92.074500	652	3210	2	chr6A.!!$R1	2558
4	TraesCS6B01G416100	chr3B	693781993	693782644	651	True	867.000000	867	90.744000	1	652	1	chr3B.!!$R5	651
5	TraesCS6B01G416100	chr3B	362621472	362622124	652	True	811.000000	811	89.226000	1	651	1	chr3B.!!$R3	650
6	TraesCS6B01G416100	chr2D	623631756	623632417	661	True	830.000000	830	89.489000	1	657	1	chr2D.!!$R2	656
7	TraesCS6B01G416100	chr4A	669634312	669634961	649	False	808.000000	808	89.177000	1	651	1	chr4A.!!$F1	650
8	TraesCS6B01G416100	chr4A	737048199	737048846	647	True	789.000000	789	88.805000	1	651	1	chr4A.!!$R1	650
9	TraesCS6B01G416100	chr4B	170976906	170977551	645	False	802.000000	802	89.177000	1	649	1	chr4B.!!$F1	648
10	TraesCS6B01G416100	chr4B	302700836	302701485	649	False	791.000000	791	88.805000	1	651	1	chr4B.!!$F2	650
11	TraesCS6B01G416100	chr2B	780527184	780527843	659	True	800.000000	800	88.839000	1	651	1	chr2B.!!$R1	650
12	TraesCS6B01G416100	chr7B	728430288	728430935	647	False	793.000000	793	88.838000	1	649	1	chr7B.!!$F1	648
13	TraesCS6B01G416100	chr3D	610804146	610805033	887	True	499.000000	499	77.248000	2001	2883	1	chr3D.!!$R2	882
14	TraesCS6B01G416100	chr3D	307880108	307882519	2411	False	448.500000	573	79.486000	1099	2888	2	chr3D.!!$F1	1789
15	TraesCS6B01G416100	chr3A	427191638	427194045	2407	False	415.000000	512	78.804000	1099	2888	2	chr3A.!!$F1	1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
982	1042	0.922626	AGCCTTTCTTCCCCCATCTC	59.077	55.0	0.0	0.0	0.0	2.75	F
1995	2912	0.306533	ACACATCGGACAAACGCAAC	59.693	50.0	0.0	0.0	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2551	3502	0.034089	GGCAGGGTAGGTGATGCTTT	60.034	55.0	0.0	0.0	38.71	3.51	R
3780	6178	0.678048	GGAATGGGCACTCTGGTCAC	60.678	60.0	0.0	0.0	0.00	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
257	270	7.221838	TCACAAATTCAGAAAATGTTCGTTTCC	59.778	33.333	2.26	0.00	38.90	3.13
265	278	2.871096	ATGTTCGTTTCCCTGCCTTA	57.129	45.000	0.00	0.00	0.00	2.69
501	520	5.084519	ACCCCATACTATAAAGATCTCGCA	58.915	41.667	0.00	0.00	0.00	5.10
504	523	5.186021	CCCATACTATAAAGATCTCGCAGGT	59.814	44.000	0.00	0.00	0.00	4.00
505	524	6.295349	CCCATACTATAAAGATCTCGCAGGTT	60.295	42.308	0.00	0.00	0.00	3.50
549	568	2.558821	CTCTCCGCTCTATCGCCG	59.441	66.667	0.00	0.00	0.00	6.46
560	581	1.679153	TCTATCGCCGCACTATTGTGA	59.321	47.619	11.66	0.00	46.55	3.58
814	838	7.559170	CCAGATCCATTTTAGTTTCTTCTCCAT	59.441	37.037	0.00	0.00	0.00	3.41
852	876	3.041940	GACCAACGGACGTGGCAG	61.042	66.667	0.00	0.00	0.00	4.85
853	877	4.619227	ACCAACGGACGTGGCAGG	62.619	66.667	5.50	5.50	0.00	4.85
856	880	4.329545	AACGGACGTGGCAGGCAT	62.330	61.111	7.17	0.00	0.00	4.40
857	881	3.842925	AACGGACGTGGCAGGCATT	62.843	57.895	7.17	0.00	0.00	3.56
919	975	3.187700	GCCTTCTATATATTCCGTGGCG	58.812	50.000	0.00	0.00	0.00	5.69
956	1012	6.447162	CACTCATCAAGTACACAGTTCACTA	58.553	40.000	0.00	0.00	36.07	2.74
975	1035	5.305644	TCACTATCATCTAGCCTTTCTTCCC	59.694	44.000	0.00	0.00	0.00	3.97
982	1042	0.922626	AGCCTTTCTTCCCCCATCTC	59.077	55.000	0.00	0.00	0.00	2.75
983	1045	0.922626	GCCTTTCTTCCCCCATCTCT	59.077	55.000	0.00	0.00	0.00	3.10
1024	1092	1.131638	TCTTGGACTGCTGGTGAGTT	58.868	50.000	0.00	0.00	0.00	3.01
1046	1114	1.522355	CAGCCACGGTGCTATGGAG	60.522	63.158	1.68	0.00	40.32	3.86
1218	1286	3.119096	GGCAAAGAGGCGTCGTCC	61.119	66.667	0.00	0.00	33.57	4.79
1431	1550	3.073735	CTGACCAGGCTCCTCGCT	61.074	66.667	0.00	0.00	39.13	4.93
1455	1574	2.478890	CGTCGCGGTCTATGAGGGT	61.479	63.158	6.13	0.00	0.00	4.34
1520	1643	5.362717	TCCATATCGAGAAGCTCAAGGTAAA	59.637	40.000	0.00	0.00	0.00	2.01
1650	1795	1.075601	TGGCTCCCTCAATTTCCAGT	58.924	50.000	0.00	0.00	0.00	4.00
1664	1809	0.328926	TCCAGTTCATGATGCCAGCA	59.671	50.000	0.00	0.00	0.00	4.41
1835	1980	0.796312	GACGGATTTTCGAGCTGCAA	59.204	50.000	1.02	0.00	0.00	4.08
1909	2407	6.551601	CCTGGTTATATGTGAGTAACTCCTCT	59.448	42.308	0.00	0.00	32.70	3.69
1910	2408	7.070074	CCTGGTTATATGTGAGTAACTCCTCTT	59.930	40.741	0.00	0.00	32.70	2.85
1913	2411	9.968870	GGTTATATGTGAGTAACTCCTCTTAAG	57.031	37.037	0.00	0.00	32.70	1.85
1917	2415	7.784470	ATGTGAGTAACTCCTCTTAAGTCTT	57.216	36.000	1.63	0.00	32.50	3.01
1918	2416	8.880991	ATGTGAGTAACTCCTCTTAAGTCTTA	57.119	34.615	1.63	0.00	32.50	2.10
1919	2417	8.701908	TGTGAGTAACTCCTCTTAAGTCTTAA	57.298	34.615	1.63	4.97	32.50	1.85
1920	2418	9.310449	TGTGAGTAACTCCTCTTAAGTCTTAAT	57.690	33.333	5.50	0.00	32.50	1.40
1922	2420	9.529823	TGAGTAACTCCTCTTAAGTCTTAATCA	57.470	33.333	5.50	4.90	32.50	2.57
1927	2425	8.830915	ACTCCTCTTAAGTCTTAATCATCTCA	57.169	34.615	5.50	0.00	0.00	3.27
1935	2433	9.942850	TTAAGTCTTAATCATCTCAATCACACA	57.057	29.630	0.65	0.00	0.00	3.72
1937	2435	8.261492	AGTCTTAATCATCTCAATCACACAAC	57.739	34.615	0.00	0.00	0.00	3.32
1941	2439	3.137533	TCATCTCAATCACACAACGCAA	58.862	40.909	0.00	0.00	0.00	4.85
1942	2440	3.563390	TCATCTCAATCACACAACGCAAA	59.437	39.130	0.00	0.00	0.00	3.68
1943	2441	3.607422	TCTCAATCACACAACGCAAAG	57.393	42.857	0.00	0.00	0.00	2.77
1944	2442	2.942376	TCTCAATCACACAACGCAAAGT	59.058	40.909	0.00	0.00	0.00	2.66
1946	2444	3.690422	TCAATCACACAACGCAAAGTTC	58.310	40.909	0.00	0.00	42.02	3.01
1949	2447	3.840890	TCACACAACGCAAAGTTCTTT	57.159	38.095	0.00	0.00	42.02	2.52
1950	2448	4.167554	TCACACAACGCAAAGTTCTTTT	57.832	36.364	0.00	0.00	42.02	2.27
1956	2454	6.088883	ACACAACGCAAAGTTCTTTTGTAAAG	59.911	34.615	2.11	0.00	46.35	1.85
1987	2904	6.894339	ATATGTACTGATACACATCGGACA	57.106	37.500	0.57	0.05	44.11	4.02
1990	2907	5.165676	TGTACTGATACACATCGGACAAAC	58.834	41.667	0.57	0.00	39.58	2.93
1995	2912	0.306533	ACACATCGGACAAACGCAAC	59.693	50.000	0.00	0.00	0.00	4.17
2119	3036	2.544486	GCAACAAGGAGAAAGCACCAAG	60.544	50.000	0.00	0.00	0.00	3.61
2245	3162	5.405935	AATTGTTCTATTTTGCAGGGTCC	57.594	39.130	0.00	0.00	0.00	4.46
2257	3174	0.898320	CAGGGTCCGAGACAACATCT	59.102	55.000	6.41	0.00	41.91	2.90
2269	3186	4.256920	AGACAACATCTGTATTGCTCACC	58.743	43.478	0.00	0.00	38.84	4.02
2343	3260	1.564348	GGAGGTCCTTGGCCTATTTGA	59.436	52.381	3.32	0.00	38.01	2.69
2350	3267	4.637977	GTCCTTGGCCTATTTGAGAAGAAG	59.362	45.833	3.32	0.00	0.00	2.85
2826	3777	1.694844	TGGCCCGACGTATTCTCATA	58.305	50.000	0.00	0.00	0.00	2.15
2892	3843	6.183360	ACAAATTAAGCTCAGGGCAATATGAC	60.183	38.462	0.00	0.00	44.79	3.06
2896	3847	1.871080	CTCAGGGCAATATGACGGTC	58.129	55.000	0.00	0.00	0.00	4.79
2977	3929	9.337396	CCATGTAATAAGCTTTCATACCTACAA	57.663	33.333	3.20	0.00	0.00	2.41
3098	4051	3.056035	AGGAAGATACGTCCTTTTTCGCT	60.056	43.478	0.00	0.00	43.26	4.93
3099	4052	4.159135	AGGAAGATACGTCCTTTTTCGCTA	59.841	41.667	0.00	0.00	43.26	4.26
3100	4053	5.048507	GGAAGATACGTCCTTTTTCGCTAT	58.951	41.667	0.00	0.00	31.94	2.97
3101	4054	6.040166	AGGAAGATACGTCCTTTTTCGCTATA	59.960	38.462	0.00	0.00	43.26	1.31
3116	4069	7.776618	TTTCGCTATATATCCTTCCTTCAGA	57.223	36.000	0.00	0.00	0.00	3.27
3149	4102	7.558161	AAGATGTCGCTTCATGAATATTGAA	57.442	32.000	8.96	0.00	0.00	2.69
3195	5585	3.265791	CTCAAGGGTCCATTTCTTCTCG	58.734	50.000	0.00	0.00	0.00	4.04
3213	5603	1.542915	TCGTGAAGGTTCCCTAAGTCG	59.457	52.381	0.00	0.00	31.13	4.18
3258	5648	9.173021	TGTTGAGAAAACTAACAAGATCAAGAA	57.827	29.630	0.00	0.00	31.95	2.52
3271	5661	7.453393	ACAAGATCAAGAAACATTCAGGAGTA	58.547	34.615	0.00	0.00	0.00	2.59
3347	5738	1.361204	TCCTTGAACAGATGGCTGGA	58.639	50.000	0.00	0.00	46.60	3.86
3560	5956	1.820519	TGAAGGACGTTACGCCTACAT	59.179	47.619	17.82	6.04	33.75	2.29
3696	6093	0.396278	TGGTTGGCATGTTGGTCACA	60.396	50.000	0.00	0.00	40.71	3.58
3735	6132	3.643199	TTTGCTATGCAGTGATGGGTA	57.357	42.857	0.00	0.00	40.61	3.69
3737	6134	2.917933	TGCTATGCAGTGATGGGTAAC	58.082	47.619	0.00	0.00	33.32	2.50
3750	6147	1.276622	GGGTAACTCCTCTCCTTGCA	58.723	55.000	0.00	0.00	36.25	4.08
3772	6169	3.344515	AGATTGCATGGGATCATCATCG	58.655	45.455	0.00	0.00	0.00	3.84
3795	6193	2.842462	ACGTGACCAGAGTGCCCA	60.842	61.111	0.00	0.00	0.00	5.36
3809	6207	4.891727	CCCATTCCGCGAGACCCG	62.892	72.222	8.23	0.00	42.21	5.28
3866	6264	5.279106	GGGGTGAAAACCAAATACACCTTAC	60.279	44.000	0.00	0.00	46.72	2.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
444	461	2.102578	GGCCACTATCCAATTTGTGCT	58.897	47.619	0.00	0.00	0.00	4.40
501	520	2.696707	TCTCGCGGGTCATATTTAACCT	59.303	45.455	5.57	0.00	35.78	3.50
504	523	3.866910	GTGTTCTCGCGGGTCATATTTAA	59.133	43.478	5.57	0.00	0.00	1.52
505	524	3.450578	GTGTTCTCGCGGGTCATATTTA	58.549	45.455	5.57	0.00	0.00	1.40
549	568	4.024387	TCAAAACGGTCTTCACAATAGTGC	60.024	41.667	0.00	0.00	45.49	4.40
560	581	2.925724	TGTGTCCATCAAAACGGTCTT	58.074	42.857	0.00	0.00	0.00	3.01
600	621	5.866092	ACGGGAGAGTTTCTTTTACGATAAC	59.134	40.000	0.00	0.00	0.00	1.89
603	624	4.532314	ACGGGAGAGTTTCTTTTACGAT	57.468	40.909	0.00	0.00	0.00	3.73
607	628	3.811083	TGCAACGGGAGAGTTTCTTTTA	58.189	40.909	0.00	0.00	30.96	1.52
666	689	3.197983	AGGTTGGATGTAGTACTGCCTTC	59.802	47.826	5.39	4.15	0.00	3.46
856	880	3.304911	TTGGGACAGATTGGTCAACAA	57.695	42.857	0.00	0.00	42.39	2.83
857	881	3.420893	GATTGGGACAGATTGGTCAACA	58.579	45.455	0.00	0.00	42.39	3.33
919	975	1.208165	ATGAGTGGGTGAGGGGTTCC	61.208	60.000	0.00	0.00	0.00	3.62
956	1012	2.713708	GGGGGAAGAAAGGCTAGATGAT	59.286	50.000	0.00	0.00	0.00	2.45
982	1042	3.499918	ACCATTGCTTTGTTTCTCGAGAG	59.500	43.478	15.94	3.92	0.00	3.20
983	1045	3.476552	ACCATTGCTTTGTTTCTCGAGA	58.523	40.909	12.08	12.08	0.00	4.04
1242	1310	3.975083	GACGTGGGCGCGTATGTCA	62.975	63.158	22.36	6.35	45.79	3.58
1449	1568	0.105194	TGACCCACTTCTCACCCTCA	60.105	55.000	0.00	0.00	0.00	3.86
1455	1574	0.836606	TGTGCTTGACCCACTTCTCA	59.163	50.000	0.00	0.00	34.38	3.27
1485	1604	0.032403	CGATATGGAACGCCGGGTTA	59.968	55.000	2.18	0.00	39.50	2.85
1548	1671	9.822185	GAAATTAATACTCCCTCCGTAAACTAA	57.178	33.333	0.00	0.00	0.00	2.24
1550	1673	7.854337	TGAAATTAATACTCCCTCCGTAAACT	58.146	34.615	0.00	0.00	0.00	2.66
1554	1677	7.124599	TCAACTGAAATTAATACTCCCTCCGTA	59.875	37.037	0.00	0.00	0.00	4.02
1556	1679	6.346096	TCAACTGAAATTAATACTCCCTCCG	58.654	40.000	0.00	0.00	0.00	4.63
1557	1680	8.753497	ATTCAACTGAAATTAATACTCCCTCC	57.247	34.615	0.00	0.00	37.61	4.30
1613	1752	2.874701	GCCATGCGTGATCTTCAGTAAT	59.125	45.455	7.72	0.00	0.00	1.89
1650	1795	2.949644	CAGAGAATGCTGGCATCATGAA	59.050	45.455	4.35	0.00	35.31	2.57
1664	1809	3.271729	CTCTTCACAGCATGCAGAGAAT	58.728	45.455	21.54	0.00	42.53	2.40
1673	1818	2.424557	CTCACAAGCTCTTCACAGCAT	58.575	47.619	0.00	0.00	42.40	3.79
1818	1963	1.667724	AGATTGCAGCTCGAAAATCCG	59.332	47.619	0.00	0.00	30.83	4.18
1835	1980	2.434884	CGGTCGGCTTGCACAGAT	60.435	61.111	0.00	0.00	0.00	2.90
1909	2407	9.942850	TGTGTGATTGAGATGATTAAGACTTAA	57.057	29.630	10.02	10.02	0.00	1.85
1910	2408	9.942850	TTGTGTGATTGAGATGATTAAGACTTA	57.057	29.630	0.00	0.00	0.00	2.24
1913	2411	7.176075	CGTTGTGTGATTGAGATGATTAAGAC	58.824	38.462	0.00	0.00	0.00	3.01
1915	2413	5.961843	GCGTTGTGTGATTGAGATGATTAAG	59.038	40.000	0.00	0.00	0.00	1.85
1916	2414	5.411053	TGCGTTGTGTGATTGAGATGATTAA	59.589	36.000	0.00	0.00	0.00	1.40
1917	2415	4.934602	TGCGTTGTGTGATTGAGATGATTA	59.065	37.500	0.00	0.00	0.00	1.75
1918	2416	3.752747	TGCGTTGTGTGATTGAGATGATT	59.247	39.130	0.00	0.00	0.00	2.57
1919	2417	3.337358	TGCGTTGTGTGATTGAGATGAT	58.663	40.909	0.00	0.00	0.00	2.45
1920	2418	2.765122	TGCGTTGTGTGATTGAGATGA	58.235	42.857	0.00	0.00	0.00	2.92
1922	2420	3.565482	ACTTTGCGTTGTGTGATTGAGAT	59.435	39.130	0.00	0.00	0.00	2.75
1924	2422	3.338818	ACTTTGCGTTGTGTGATTGAG	57.661	42.857	0.00	0.00	0.00	3.02
1927	2425	4.370364	AAGAACTTTGCGTTGTGTGATT	57.630	36.364	0.00	0.00	35.56	2.57
1929	2427	3.840890	AAAGAACTTTGCGTTGTGTGA	57.159	38.095	0.00	0.00	35.56	3.58
1930	2428	4.229906	CAAAAGAACTTTGCGTTGTGTG	57.770	40.909	0.45	0.00	38.17	3.82
1977	2894	0.586319	AGTTGCGTTTGTCCGATGTG	59.414	50.000	0.00	0.00	0.00	3.21
1995	2912	0.678048	GGTAGGCAAGGACCTGCAAG	60.678	60.000	15.09	0.00	43.66	4.01
2093	3010	1.888512	GCTTTCTCCTTGTTGCATGGA	59.111	47.619	0.00	4.14	36.48	3.41
2095	3012	2.608752	GGTGCTTTCTCCTTGTTGCATG	60.609	50.000	0.00	0.00	32.98	4.06
2119	3036	5.035784	GCATTAAGCCGAGTAAATCATCC	57.964	43.478	0.00	0.00	37.23	3.51
2245	3162	4.032217	GTGAGCAATACAGATGTTGTCTCG	59.968	45.833	0.00	0.00	41.29	4.04
2257	3174	3.008923	TCATTGTCCAGGTGAGCAATACA	59.991	43.478	0.00	0.00	31.29	2.29
2269	3186	2.205074	GCCAGTACGATCATTGTCCAG	58.795	52.381	0.00	0.00	0.00	3.86
2343	3260	3.131400	GTCATACTCGGGCTTCTTCTTCT	59.869	47.826	0.00	0.00	0.00	2.85
2350	3267	1.591863	GCCGTCATACTCGGGCTTC	60.592	63.158	6.50	0.00	46.90	3.86
2551	3502	0.034089	GGCAGGGTAGGTGATGCTTT	60.034	55.000	0.00	0.00	38.71	3.51
2826	3777	5.172934	CAACATTTTCTGGTTATGCAGCAT	58.827	37.500	13.73	13.73	30.62	3.79
2892	3843	3.736252	GCACACTGCTATAATACTGACCG	59.264	47.826	0.00	0.00	40.96	4.79
2896	3847	6.426025	ACATCATGCACACTGCTATAATACTG	59.574	38.462	0.00	0.00	45.31	2.74
2977	3929	8.210265	ACATGGTTGGACTTTATTTCAAACATT	58.790	29.630	0.00	0.00	42.66	2.71
3098	4051	6.493802	ACAAGCGTCTGAAGGAAGGATATATA	59.506	38.462	0.00	0.00	0.00	0.86
3099	4052	5.305644	ACAAGCGTCTGAAGGAAGGATATAT	59.694	40.000	0.00	0.00	0.00	0.86
3100	4053	4.649674	ACAAGCGTCTGAAGGAAGGATATA	59.350	41.667	0.00	0.00	0.00	0.86
3101	4054	3.452627	ACAAGCGTCTGAAGGAAGGATAT	59.547	43.478	0.00	0.00	0.00	1.63
3116	4069	2.080286	AGCGACATCTTAACAAGCGT	57.920	45.000	0.00	0.00	0.00	5.07
3149	4102	4.704057	GCCATGAGACTTTCCTTTGAAGAT	59.296	41.667	0.00	0.00	0.00	2.40
3213	5603	8.378565	TCTCAACAATTAATGGATATCTCCCTC	58.621	37.037	2.05	0.00	41.29	4.30
3244	5634	7.939039	ACTCCTGAATGTTTCTTGATCTTGTTA	59.061	33.333	0.00	0.00	0.00	2.41
3258	5648	8.950210	CACATCTTTTACATACTCCTGAATGTT	58.050	33.333	0.00	0.00	37.50	2.71
3271	5661	4.540099	TCCTCCTTCCCACATCTTTTACAT	59.460	41.667	0.00	0.00	0.00	2.29
3347	5738	6.623329	TCATATCTAAGGCCCATTGGATTTT	58.377	36.000	8.59	0.00	33.12	1.82
3401	5792	1.077858	GCTTGAAGGGCTGAGAGGG	60.078	63.158	0.00	0.00	0.00	4.30
3655	6052	1.625818	GGGTAGCTACTAGGCATGCAT	59.374	52.381	22.74	16.31	34.17	3.96
3696	6093	1.262640	AACCGCCGACCCTACAATCT	61.263	55.000	0.00	0.00	0.00	2.40
3735	6132	3.683802	CAATCTTGCAAGGAGAGGAGTT	58.316	45.455	25.73	6.13	0.00	3.01
3750	6147	3.756963	CGATGATGATCCCATGCAATCTT	59.243	43.478	0.00	0.00	32.09	2.40
3772	6169	1.227556	ACTCTGGTCACGTGGCAAC	60.228	57.895	23.45	9.99	0.00	4.17
3780	6178	0.678048	GGAATGGGCACTCTGGTCAC	60.678	60.000	0.00	0.00	0.00	3.67
3811	6209	4.943705	ACCCATTGTGTGACTAATCATCAC	59.056	41.667	0.00	0.00	45.58	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.