Multiple sequence alignment - TraesCS6B01G415700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G415700 chr6B 100.000 4668 0 0 589 5256 688293661 688298328 0.000000e+00 8621.0
1 TraesCS6B01G415700 chr6B 100.000 70 0 0 1 70 688293073 688293142 4.270000e-26 130.0
2 TraesCS6B01G415700 chr6D 91.772 4339 203 75 968 5256 453005976 453010210 0.000000e+00 5893.0
3 TraesCS6B01G415700 chr6D 82.114 369 29 16 589 933 453005620 453005975 1.110000e-71 281.0
4 TraesCS6B01G415700 chr6A 91.236 4427 217 86 589 4938 599042678 599047010 0.000000e+00 5867.0
5 TraesCS6B01G415700 chr6A 92.069 290 19 4 4970 5256 599047176 599047464 6.340000e-109 405.0
6 TraesCS6B01G415700 chr7B 100.000 31 0 0 4566 4596 566837840 566837810 2.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G415700 chr6B 688293073 688298328 5255 False 4375.5 8621 100.0000 1 5256 2 chr6B.!!$F1 5255
1 TraesCS6B01G415700 chr6D 453005620 453010210 4590 False 3087.0 5893 86.9430 589 5256 2 chr6D.!!$F1 4667
2 TraesCS6B01G415700 chr6A 599042678 599047464 4786 False 3136.0 5867 91.6525 589 5256 2 chr6A.!!$F1 4667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 997 0.342313 GGTTAAGAGAGGGGAGGGGA 59.658 60.0 0.0 0.0 0.00 4.81 F
1226 1279 0.034337 GCCGTCAAACTGGTACTGGA 59.966 55.0 0.0 0.0 0.00 3.86 F
1771 1830 0.035317 TCAAGACCGTGCTCATGCTT 59.965 50.0 0.0 0.0 40.48 3.91 F
2908 3004 0.107945 CCTCAGAGGCAGGTTAGTGC 60.108 60.0 2.6 0.0 43.19 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 2920 1.135460 GCTTTGCTCTGCATCAGAACC 60.135 52.381 0.00 0.0 40.18 3.62 R
2825 2921 1.538512 TGCTTTGCTCTGCATCAGAAC 59.461 47.619 0.00 0.0 40.18 3.01 R
3010 3106 1.588082 CCATGGCAGGCTGTTGAAC 59.412 57.895 17.16 0.0 0.00 3.18 R
4362 4463 0.252197 GGGCTGTTGACGAATAGGGT 59.748 55.000 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.669115 CCAAGACGGGCTGTGTCTG 60.669 63.158 2.25 1.29 45.62 3.51
35 36 1.669115 CAAGACGGGCTGTGTCTGG 60.669 63.158 2.25 0.00 45.62 3.86
36 37 3.537206 AAGACGGGCTGTGTCTGGC 62.537 63.158 2.25 0.00 45.62 4.85
37 38 4.008933 GACGGGCTGTGTCTGGCT 62.009 66.667 2.25 0.00 33.54 4.75
38 39 4.320456 ACGGGCTGTGTCTGGCTG 62.320 66.667 0.00 7.28 39.43 4.85
43 44 4.320456 CTGTGTCTGGCTGGCCGT 62.320 66.667 7.14 0.00 39.42 5.68
44 45 3.832237 CTGTGTCTGGCTGGCCGTT 62.832 63.158 7.14 0.00 39.42 4.44
45 46 3.357079 GTGTCTGGCTGGCCGTTG 61.357 66.667 7.14 0.50 39.42 4.10
48 49 4.269523 TCTGGCTGGCCGTTGCTT 62.270 61.111 13.56 0.00 39.42 3.91
49 50 2.359850 CTGGCTGGCCGTTGCTTA 60.360 61.111 13.56 4.51 39.42 3.09
50 51 2.671619 TGGCTGGCCGTTGCTTAC 60.672 61.111 13.56 0.45 39.42 2.34
51 52 2.359975 GGCTGGCCGTTGCTTACT 60.360 61.111 13.56 0.00 37.74 2.24
52 53 1.971695 GGCTGGCCGTTGCTTACTT 60.972 57.895 13.56 0.00 37.74 2.24
53 54 0.675522 GGCTGGCCGTTGCTTACTTA 60.676 55.000 13.56 0.00 37.74 2.24
54 55 0.446616 GCTGGCCGTTGCTTACTTAC 59.553 55.000 0.00 0.00 37.74 2.34
55 56 1.944430 GCTGGCCGTTGCTTACTTACT 60.944 52.381 0.00 0.00 37.74 2.24
56 57 2.423577 CTGGCCGTTGCTTACTTACTT 58.576 47.619 0.00 0.00 37.74 2.24
57 58 3.592059 CTGGCCGTTGCTTACTTACTTA 58.408 45.455 0.00 0.00 37.74 2.24
58 59 3.328505 TGGCCGTTGCTTACTTACTTAC 58.671 45.455 0.00 0.00 37.74 2.34
59 60 3.007182 TGGCCGTTGCTTACTTACTTACT 59.993 43.478 0.00 0.00 37.74 2.24
60 61 4.220382 TGGCCGTTGCTTACTTACTTACTA 59.780 41.667 0.00 0.00 37.74 1.82
61 62 4.564372 GGCCGTTGCTTACTTACTTACTAC 59.436 45.833 0.00 0.00 37.74 2.73
62 63 5.405797 GCCGTTGCTTACTTACTTACTACT 58.594 41.667 0.00 0.00 33.53 2.57
63 64 6.404734 GGCCGTTGCTTACTTACTTACTACTA 60.405 42.308 0.00 0.00 37.74 1.82
64 65 6.470556 GCCGTTGCTTACTTACTTACTACTAC 59.529 42.308 0.00 0.00 33.53 2.73
65 66 6.969473 CCGTTGCTTACTTACTTACTACTACC 59.031 42.308 0.00 0.00 0.00 3.18
66 67 7.362056 CCGTTGCTTACTTACTTACTACTACCA 60.362 40.741 0.00 0.00 0.00 3.25
67 68 7.483059 CGTTGCTTACTTACTTACTACTACCAC 59.517 40.741 0.00 0.00 0.00 4.16
68 69 7.396540 TGCTTACTTACTTACTACTACCACC 57.603 40.000 0.00 0.00 0.00 4.61
69 70 7.177878 TGCTTACTTACTTACTACTACCACCT 58.822 38.462 0.00 0.00 0.00 4.00
656 663 2.690510 GCTTCTCCTGCCTCCCCT 60.691 66.667 0.00 0.00 0.00 4.79
659 666 3.642741 TTCTCCTGCCTCCCCTCCC 62.643 68.421 0.00 0.00 0.00 4.30
713 726 3.068691 TCCTCCGGAGAAGCCACG 61.069 66.667 33.39 14.04 35.94 4.94
784 819 1.889955 CGCTTCGATTCGTTTCGTTTG 59.110 47.619 5.89 3.66 40.03 2.93
808 843 0.622665 ATTCTTGCTCCCCTGTCCTG 59.377 55.000 0.00 0.00 0.00 3.86
820 855 2.037772 CCCTGTCCTGCTGTACATATCC 59.962 54.545 0.00 0.00 0.00 2.59
864 899 2.885113 CGGCGTGTCTGGATCTGA 59.115 61.111 0.00 0.00 0.00 3.27
872 919 2.657944 CTGGATCTGAGCTCGCGC 60.658 66.667 9.64 0.00 0.00 6.86
873 920 4.559229 TGGATCTGAGCTCGCGCG 62.559 66.667 26.76 26.76 42.32 6.86
936 983 0.614294 TTTGGATCTCGCGGGGTTAA 59.386 50.000 5.94 0.00 0.00 2.01
945 992 1.688187 GCGGGGTTAAGAGAGGGGA 60.688 63.158 0.00 0.00 0.00 4.81
947 994 1.049289 CGGGGTTAAGAGAGGGGAGG 61.049 65.000 0.00 0.00 0.00 4.30
949 996 0.694783 GGGTTAAGAGAGGGGAGGGG 60.695 65.000 0.00 0.00 0.00 4.79
950 997 0.342313 GGTTAAGAGAGGGGAGGGGA 59.658 60.000 0.00 0.00 0.00 4.81
951 998 1.693083 GGTTAAGAGAGGGGAGGGGAG 60.693 61.905 0.00 0.00 0.00 4.30
952 999 0.642710 TTAAGAGAGGGGAGGGGAGG 59.357 60.000 0.00 0.00 0.00 4.30
953 1000 1.304936 TAAGAGAGGGGAGGGGAGGG 61.305 65.000 0.00 0.00 0.00 4.30
959 1006 4.364686 GGGAGGGGAGGGGGTCAA 62.365 72.222 0.00 0.00 0.00 3.18
960 1007 2.692741 GGAGGGGAGGGGGTCAAG 60.693 72.222 0.00 0.00 0.00 3.02
961 1008 2.692741 GAGGGGAGGGGGTCAAGG 60.693 72.222 0.00 0.00 0.00 3.61
980 1027 2.165301 CCGTTGATTCGTCGGGAGC 61.165 63.158 10.24 0.00 40.49 4.70
993 1040 4.840005 GGAGCCAGGCAGCGGTAC 62.840 72.222 15.80 0.00 38.01 3.34
998 1045 4.514577 CAGGCAGCGGTACTCGGG 62.515 72.222 6.00 0.00 39.69 5.14
1102 1149 1.003233 GCCGCCCCTCTCCAATATC 60.003 63.158 0.00 0.00 0.00 1.63
1114 1161 7.614583 CCCCTCTCCAATATCGTTACTCTATTA 59.385 40.741 0.00 0.00 0.00 0.98
1115 1162 9.191479 CCCTCTCCAATATCGTTACTCTATTAT 57.809 37.037 0.00 0.00 0.00 1.28
1134 1187 6.686484 ATTATTTTTCTCCTTGCTTTGGGT 57.314 33.333 0.00 0.00 0.00 4.51
1142 1195 1.824852 CCTTGCTTTGGGTATGGGAAC 59.175 52.381 0.00 0.00 0.00 3.62
1160 1213 2.283145 ACCAAGATGCTGACTTTGCT 57.717 45.000 0.00 0.00 0.00 3.91
1162 1215 1.201647 CCAAGATGCTGACTTTGCTGG 59.798 52.381 0.00 0.00 0.00 4.85
1194 1247 1.232119 CAGCTGTGAATGTGCAGACA 58.768 50.000 5.25 0.00 34.87 3.41
1226 1279 0.034337 GCCGTCAAACTGGTACTGGA 59.966 55.000 0.00 0.00 0.00 3.86
1245 1298 4.036941 GGATTCCGTCCTACTATCCTCT 57.963 50.000 0.00 0.00 44.16 3.69
1248 1301 4.363991 TTCCGTCCTACTATCCTCTACC 57.636 50.000 0.00 0.00 0.00 3.18
1254 1307 4.763279 GTCCTACTATCCTCTACCAAGAGC 59.237 50.000 0.00 0.00 46.84 4.09
1258 1311 5.862678 ACTATCCTCTACCAAGAGCTTTC 57.137 43.478 0.00 0.00 46.84 2.62
1271 1324 5.853282 CCAAGAGCTTTCGTTTACTTGATTG 59.147 40.000 8.62 0.00 37.49 2.67
1273 1326 7.301054 CAAGAGCTTTCGTTTACTTGATTGAT 58.699 34.615 0.00 0.00 37.49 2.57
1274 1327 7.440523 AGAGCTTTCGTTTACTTGATTGATT 57.559 32.000 0.00 0.00 0.00 2.57
1275 1328 7.522374 AGAGCTTTCGTTTACTTGATTGATTC 58.478 34.615 0.00 0.00 0.00 2.52
1276 1329 7.173218 AGAGCTTTCGTTTACTTGATTGATTCA 59.827 33.333 0.00 0.00 0.00 2.57
1277 1330 7.820648 AGCTTTCGTTTACTTGATTGATTCAT 58.179 30.769 0.00 0.00 33.34 2.57
1278 1331 8.299570 AGCTTTCGTTTACTTGATTGATTCATT 58.700 29.630 0.00 0.00 33.34 2.57
1279 1332 8.578769 GCTTTCGTTTACTTGATTGATTCATTC 58.421 33.333 2.31 2.31 33.34 2.67
1280 1333 9.611284 CTTTCGTTTACTTGATTGATTCATTCA 57.389 29.630 7.07 7.07 33.34 2.57
1281 1334 9.611284 TTTCGTTTACTTGATTGATTCATTCAG 57.389 29.630 10.25 8.15 35.27 3.02
1282 1335 7.243487 TCGTTTACTTGATTGATTCATTCAGC 58.757 34.615 10.25 0.00 35.27 4.26
1283 1336 6.193410 CGTTTACTTGATTGATTCATTCAGCG 59.807 38.462 10.25 8.81 35.27 5.18
1284 1337 6.983474 TTACTTGATTGATTCATTCAGCGA 57.017 33.333 10.25 0.00 35.27 4.93
1285 1338 5.481200 ACTTGATTGATTCATTCAGCGAG 57.519 39.130 10.25 8.48 35.27 5.03
1286 1339 3.957671 TGATTGATTCATTCAGCGAGC 57.042 42.857 7.07 0.00 35.27 5.03
1287 1340 3.272581 TGATTGATTCATTCAGCGAGCA 58.727 40.909 7.07 0.00 35.27 4.26
1288 1341 3.690628 TGATTGATTCATTCAGCGAGCAA 59.309 39.130 7.07 0.00 35.27 3.91
1305 1358 1.458827 GCAACAGCTTGAGAAGAGTCG 59.541 52.381 0.00 0.00 0.00 4.18
1306 1359 1.458827 CAACAGCTTGAGAAGAGTCGC 59.541 52.381 0.00 0.00 0.00 5.19
1308 1361 1.066914 CAGCTTGAGAAGAGTCGCAC 58.933 55.000 0.00 0.00 32.81 5.34
1333 1386 1.131126 TGCTGCTTGCGCTAAAAGATC 59.869 47.619 9.73 0.00 46.63 2.75
1334 1387 1.131126 GCTGCTTGCGCTAAAAGATCA 59.869 47.619 9.73 0.00 36.97 2.92
1335 1388 2.778659 CTGCTTGCGCTAAAAGATCAC 58.221 47.619 9.73 0.00 36.97 3.06
1370 1423 1.201921 CGCCGTAGTGAAATGCTTGTC 60.202 52.381 0.00 0.00 0.00 3.18
1374 1427 3.498397 CCGTAGTGAAATGCTTGTCTTGT 59.502 43.478 0.00 0.00 0.00 3.16
1383 1436 6.204688 TGAAATGCTTGTCTTGTTGTACCTAG 59.795 38.462 0.00 0.00 0.00 3.02
1384 1437 4.682778 TGCTTGTCTTGTTGTACCTAGT 57.317 40.909 0.00 0.00 0.00 2.57
1385 1438 4.628074 TGCTTGTCTTGTTGTACCTAGTC 58.372 43.478 0.00 0.00 0.00 2.59
1401 1454 4.399934 ACCTAGTCTCAGTTTAGCTAGTGC 59.600 45.833 0.00 0.00 40.05 4.40
1445 1498 2.180131 CTGAGACGCTGCTTTGTGGC 62.180 60.000 0.00 0.00 0.00 5.01
1533 1586 2.249309 TCCAGGGAGGAAGTAAGTCC 57.751 55.000 0.00 0.00 45.65 3.85
1576 1629 4.588106 TGACCATGTCAATCAATGTGGTTT 59.412 37.500 0.00 0.00 39.78 3.27
1705 1764 2.988010 TGGTGATTGATCTTCTCGGG 57.012 50.000 0.00 0.00 0.00 5.14
1771 1830 0.035317 TCAAGACCGTGCTCATGCTT 59.965 50.000 0.00 0.00 40.48 3.91
1813 1872 4.020039 ACACCTCCGGTTCATTGTTATACA 60.020 41.667 0.00 0.00 31.02 2.29
1814 1873 5.123227 CACCTCCGGTTCATTGTTATACAT 58.877 41.667 0.00 0.00 31.02 2.29
1815 1874 6.126997 ACACCTCCGGTTCATTGTTATACATA 60.127 38.462 0.00 0.00 31.02 2.29
1817 1876 8.092068 CACCTCCGGTTCATTGTTATACATATA 58.908 37.037 0.00 0.00 31.02 0.86
1988 2064 2.962859 AGGAAAGCCAATCAGGTTTGT 58.037 42.857 0.00 0.00 40.29 2.83
2020 2097 5.989777 TCCGCCTCTCTGCTAATTTAATTAC 59.010 40.000 0.00 0.00 0.00 1.89
2056 2145 9.490379 CTACAGACTACCATCTTGTTTAAAAGT 57.510 33.333 0.00 0.00 0.00 2.66
2089 2178 1.164411 TGCATTCTGCCAGTTAACCG 58.836 50.000 0.88 0.00 44.23 4.44
2100 2189 3.058914 GCCAGTTAACCGCATAGCTTATG 60.059 47.826 0.88 0.00 39.18 1.90
2234 2324 5.283457 ACTGCTCCAGTAGTCAAATATCC 57.717 43.478 0.00 0.00 43.46 2.59
2235 2325 4.716784 ACTGCTCCAGTAGTCAAATATCCA 59.283 41.667 0.00 0.00 43.46 3.41
2282 2374 5.086058 GTCGTGTTAACATGCTTGTAATGG 58.914 41.667 20.84 0.00 34.06 3.16
2297 2389 0.316204 AATGGTGTTGCTGCTTCTGC 59.684 50.000 0.00 0.00 40.20 4.26
2298 2390 0.538977 ATGGTGTTGCTGCTTCTGCT 60.539 50.000 0.00 0.00 40.48 4.24
2303 2395 2.033299 GTGTTGCTGCTTCTGCTGTAAA 59.967 45.455 0.00 0.00 42.09 2.01
2309 2401 3.192212 GCTGCTTCTGCTGTAAAAAGGAT 59.808 43.478 0.00 0.00 39.81 3.24
2310 2402 4.396166 GCTGCTTCTGCTGTAAAAAGGATA 59.604 41.667 0.00 0.00 39.81 2.59
2311 2403 5.067023 GCTGCTTCTGCTGTAAAAAGGATAT 59.933 40.000 0.00 0.00 39.81 1.63
2364 2456 5.311649 AGATGGTCCATTGATATAGGCTGTT 59.688 40.000 5.65 0.00 0.00 3.16
2368 2460 6.014242 TGGTCCATTGATATAGGCTGTTAGAG 60.014 42.308 0.00 0.00 0.00 2.43
2385 2477 6.609533 TGTTAGAGCGTAAGTTACAGAGAAG 58.390 40.000 13.33 0.00 41.68 2.85
2389 2481 4.080687 AGCGTAAGTTACAGAGAAGGTCT 58.919 43.478 13.33 0.00 41.68 3.85
2406 2498 8.441311 AGAAGGTCTATTGATATAGGCAATCA 57.559 34.615 6.83 0.00 40.11 2.57
2432 2528 4.229304 TGCAACTAAGGCCATAAGCTAA 57.771 40.909 5.01 0.00 43.05 3.09
2436 2532 5.067805 GCAACTAAGGCCATAAGCTAACAAT 59.932 40.000 5.01 0.00 43.05 2.71
2437 2533 6.405842 GCAACTAAGGCCATAAGCTAACAATT 60.406 38.462 5.01 0.00 43.05 2.32
2582 2678 1.372501 AGCACATCCCCTACAGGTTT 58.627 50.000 0.00 0.00 0.00 3.27
2603 2699 6.630045 GGTTTGTTTAAACTACTTGTACTGCG 59.370 38.462 18.72 0.00 44.39 5.18
2908 3004 0.107945 CCTCAGAGGCAGGTTAGTGC 60.108 60.000 2.60 0.00 43.19 4.40
2971 3067 7.319646 ACGTTTTGCACCAATGATGTATTTAT 58.680 30.769 4.38 0.00 0.00 1.40
3010 3106 8.594881 ATGCTAACTTAATCCATCTTTCTACG 57.405 34.615 0.00 0.00 0.00 3.51
3019 3115 3.994392 TCCATCTTTCTACGTTCAACAGC 59.006 43.478 0.00 0.00 0.00 4.40
3182 3281 7.104043 ACACTTGCATATGATAATTTGTGCT 57.896 32.000 6.97 0.00 33.95 4.40
3320 3419 2.193127 TCATCCGGGAAGGTGTGTATT 58.807 47.619 0.00 0.00 41.99 1.89
3326 3427 2.443416 GGGAAGGTGTGTATTTGGACC 58.557 52.381 0.00 0.00 0.00 4.46
3620 3721 1.110442 CCCAGGTTTGTTCTTGTGCA 58.890 50.000 0.00 0.00 0.00 4.57
3626 3727 3.067180 AGGTTTGTTCTTGTGCACATGAG 59.933 43.478 27.93 20.55 32.66 2.90
3750 3851 4.897509 TCTGAATCAGAGTGACAACCAT 57.102 40.909 9.18 0.00 35.39 3.55
3982 4083 2.073037 GACCTCGTACATCCTCCCGC 62.073 65.000 0.00 0.00 0.00 6.13
4099 4200 0.613260 TCTCCAGCAGCAATAACGGT 59.387 50.000 0.00 0.00 0.00 4.83
4265 4366 4.567747 GCAAGAGGAAATAACAGGAAGGGA 60.568 45.833 0.00 0.00 0.00 4.20
4277 4378 2.204306 AAGGGAGGGGGACAAGGG 60.204 66.667 0.00 0.00 0.00 3.95
4278 4379 2.782997 GAAGGGAGGGGGACAAGGGA 62.783 65.000 0.00 0.00 0.00 4.20
4279 4380 2.204244 GGGAGGGGGACAAGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
4280 4381 2.613482 GGGAGGGGGACAAGGGAAC 61.613 68.421 0.00 0.00 0.00 3.62
4360 4461 4.839121 TGTAAATGACAGGATACCACCAC 58.161 43.478 0.00 0.00 32.86 4.16
4361 4462 3.366052 AAATGACAGGATACCACCACC 57.634 47.619 0.00 0.00 37.17 4.61
4362 4463 1.965414 ATGACAGGATACCACCACCA 58.035 50.000 0.00 0.00 37.17 4.17
4412 4513 3.686227 TCCCATAATTTCCATGGTGCT 57.314 42.857 12.58 0.00 41.26 4.40
4504 4608 1.128878 TGTTGGTTGTTGTTGTCGTCG 59.871 47.619 0.00 0.00 0.00 5.12
4510 4614 1.195513 TGTTGTTGTCGTCGTCGTCG 61.196 55.000 5.50 5.50 38.33 5.12
4511 4615 1.062365 TTGTTGTCGTCGTCGTCGT 59.938 52.632 11.41 0.00 38.33 4.34
4512 4616 0.925267 TTGTTGTCGTCGTCGTCGTC 60.925 55.000 11.41 6.94 38.33 4.20
4513 4617 2.128017 TTGTCGTCGTCGTCGTCG 60.128 61.111 14.18 14.18 46.06 5.12
4655 4759 6.385649 TTTCCGAGACTTTGCTGTAATTTT 57.614 33.333 0.00 0.00 0.00 1.82
4656 4760 5.607119 TCCGAGACTTTGCTGTAATTTTC 57.393 39.130 0.00 0.00 0.00 2.29
4657 4761 5.305585 TCCGAGACTTTGCTGTAATTTTCT 58.694 37.500 0.00 0.00 0.00 2.52
4658 4762 5.408604 TCCGAGACTTTGCTGTAATTTTCTC 59.591 40.000 0.00 0.00 0.00 2.87
4662 4766 6.538263 AGACTTTGCTGTAATTTTCTCTCCT 58.462 36.000 0.00 0.00 0.00 3.69
4663 4767 6.652900 AGACTTTGCTGTAATTTTCTCTCCTC 59.347 38.462 0.00 0.00 0.00 3.71
4664 4768 6.538263 ACTTTGCTGTAATTTTCTCTCCTCT 58.462 36.000 0.00 0.00 0.00 3.69
4665 4769 6.652900 ACTTTGCTGTAATTTTCTCTCCTCTC 59.347 38.462 0.00 0.00 0.00 3.20
4666 4770 6.365970 TTGCTGTAATTTTCTCTCCTCTCT 57.634 37.500 0.00 0.00 0.00 3.10
4667 4771 6.365970 TGCTGTAATTTTCTCTCCTCTCTT 57.634 37.500 0.00 0.00 0.00 2.85
4700 4804 2.373169 ACCTCTGGATCTGCTTGTTCAA 59.627 45.455 0.00 0.00 0.00 2.69
4744 4850 8.507524 AGTAACTTCCAGTATAAAATTCCAGC 57.492 34.615 0.00 0.00 0.00 4.85
4775 4881 8.696043 TGGTTATAGATATTCTTGCATTGCTT 57.304 30.769 10.49 0.00 0.00 3.91
4784 4890 1.933181 CTTGCATTGCTTCGGTATCGA 59.067 47.619 10.49 0.00 44.44 3.59
4785 4891 2.238942 TGCATTGCTTCGGTATCGAT 57.761 45.000 10.49 2.16 45.51 3.59
4786 4892 1.866601 TGCATTGCTTCGGTATCGATG 59.133 47.619 8.54 2.32 45.51 3.84
4787 4893 1.867233 GCATTGCTTCGGTATCGATGT 59.133 47.619 8.54 0.00 45.51 3.06
4788 4894 3.057019 GCATTGCTTCGGTATCGATGTA 58.943 45.455 8.54 5.62 45.51 2.29
4792 4898 6.508563 GCATTGCTTCGGTATCGATGTATATG 60.509 42.308 8.54 13.33 45.51 1.78
4797 4932 6.251589 GCTTCGGTATCGATGTATATGAACTG 59.748 42.308 8.54 0.47 45.51 3.16
5011 5297 9.974980 TTTTTAAAAGTTGATTCCTTATTCGCT 57.025 25.926 0.14 0.00 0.00 4.93
5050 5336 7.094506 GGAAGTAAAATAACCCTGTACCTGTTG 60.095 40.741 0.00 0.00 0.00 3.33
5058 5344 2.663852 GTACCTGTTGCCACGCGT 60.664 61.111 5.58 5.58 0.00 6.01
5078 5364 3.569210 CACTGGCAGGTGGGACCA 61.569 66.667 20.34 0.00 41.95 4.02
5090 5376 2.821366 GGACCAGCATGTCAGCCG 60.821 66.667 7.77 0.00 36.97 5.52
5115 5401 2.211806 CGTCGTTTTCACTTTACCCCA 58.788 47.619 0.00 0.00 0.00 4.96
5121 5408 2.554370 TTCACTTTACCCCAGAACGG 57.446 50.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.669115 CAGACACAGCCCGTCTTGG 60.669 63.158 0.00 0.00 41.80 3.61
17 18 1.669115 CCAGACACAGCCCGTCTTG 60.669 63.158 0.00 0.00 41.80 3.02
18 19 2.743718 CCAGACACAGCCCGTCTT 59.256 61.111 0.00 0.00 41.80 3.01
19 20 4.008933 GCCAGACACAGCCCGTCT 62.009 66.667 0.00 0.00 44.55 4.18
20 21 4.008933 AGCCAGACACAGCCCGTC 62.009 66.667 0.00 0.00 0.00 4.79
21 22 4.320456 CAGCCAGACACAGCCCGT 62.320 66.667 0.00 0.00 0.00 5.28
26 27 3.832237 AACGGCCAGCCAGACACAG 62.832 63.158 9.78 0.00 35.37 3.66
27 28 3.872603 AACGGCCAGCCAGACACA 61.873 61.111 9.78 0.00 35.37 3.72
28 29 3.357079 CAACGGCCAGCCAGACAC 61.357 66.667 9.78 0.00 35.37 3.67
31 32 2.889606 TAAGCAACGGCCAGCCAGA 61.890 57.895 9.78 0.00 42.56 3.86
32 33 2.359850 TAAGCAACGGCCAGCCAG 60.360 61.111 9.78 4.30 42.56 4.85
33 34 2.671619 GTAAGCAACGGCCAGCCA 60.672 61.111 9.78 0.00 42.56 4.75
34 35 0.675522 TAAGTAAGCAACGGCCAGCC 60.676 55.000 2.24 0.00 42.56 4.85
35 36 0.446616 GTAAGTAAGCAACGGCCAGC 59.553 55.000 2.24 3.14 42.56 4.85
36 37 2.094762 AGTAAGTAAGCAACGGCCAG 57.905 50.000 2.24 0.00 42.56 4.85
37 38 2.554370 AAGTAAGTAAGCAACGGCCA 57.446 45.000 2.24 0.00 42.56 5.36
38 39 3.593096 AGTAAGTAAGTAAGCAACGGCC 58.407 45.455 0.00 0.00 42.56 6.13
39 40 5.405797 AGTAGTAAGTAAGTAAGCAACGGC 58.594 41.667 0.00 0.00 41.61 5.68
40 41 6.969473 GGTAGTAGTAAGTAAGTAAGCAACGG 59.031 42.308 0.00 0.00 0.00 4.44
41 42 7.483059 GTGGTAGTAGTAAGTAAGTAAGCAACG 59.517 40.741 0.00 0.00 0.00 4.10
42 43 7.757173 GGTGGTAGTAGTAAGTAAGTAAGCAAC 59.243 40.741 0.00 0.00 0.00 4.17
43 44 7.671398 AGGTGGTAGTAGTAAGTAAGTAAGCAA 59.329 37.037 0.00 0.00 0.00 3.91
44 45 7.177878 AGGTGGTAGTAGTAAGTAAGTAAGCA 58.822 38.462 0.00 0.00 0.00 3.91
45 46 7.637631 AGGTGGTAGTAGTAAGTAAGTAAGC 57.362 40.000 0.00 0.00 0.00 3.09
641 648 2.041265 GGAGGGGAGGCAGGAGAA 59.959 66.667 0.00 0.00 0.00 2.87
642 649 4.095400 GGGAGGGGAGGCAGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
672 685 1.980052 CAAGCAGACCGGGTTCCTA 59.020 57.895 6.32 0.00 0.00 2.94
727 740 2.878429 CGAGGATATCCGGCGAGG 59.122 66.667 26.16 7.90 42.08 4.63
757 792 3.631127 GAATCGAAGCGAGCGGGC 61.631 66.667 0.00 0.00 39.91 6.13
758 793 3.323136 CGAATCGAAGCGAGCGGG 61.323 66.667 0.00 0.00 39.91 6.13
759 794 1.683790 AAACGAATCGAAGCGAGCGG 61.684 55.000 10.55 2.40 39.91 5.52
760 795 0.313547 GAAACGAATCGAAGCGAGCG 60.314 55.000 10.55 11.44 39.91 5.03
761 796 0.313547 CGAAACGAATCGAAGCGAGC 60.314 55.000 10.55 5.03 45.48 5.03
784 819 1.339151 ACAGGGGAGCAAGAATCGAAC 60.339 52.381 0.00 0.00 0.00 3.95
808 843 0.314302 ACCGAGCGGATATGTACAGC 59.686 55.000 16.83 0.00 38.96 4.40
873 920 1.832411 GAATCGAGCCGGGATTTCGC 61.832 60.000 2.18 0.00 34.41 4.70
914 961 2.890474 CCCGCGAGATCCAAACCG 60.890 66.667 8.23 0.00 0.00 4.44
936 983 3.039526 CCCTCCCCTCCCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
949 996 3.647771 AACGGCCTTGACCCCCTC 61.648 66.667 0.00 0.00 0.00 4.30
950 997 3.966543 CAACGGCCTTGACCCCCT 61.967 66.667 0.00 0.00 30.42 4.79
951 998 2.781431 AATCAACGGCCTTGACCCCC 62.781 60.000 16.66 0.00 41.87 5.40
952 999 1.304134 AATCAACGGCCTTGACCCC 60.304 57.895 16.66 0.00 41.87 4.95
953 1000 1.644786 CGAATCAACGGCCTTGACCC 61.645 60.000 16.66 11.57 41.87 4.46
955 1002 0.442699 GACGAATCAACGGCCTTGAC 59.557 55.000 16.66 7.34 41.87 3.18
956 1003 1.011968 CGACGAATCAACGGCCTTGA 61.012 55.000 16.66 16.66 43.28 3.02
957 1004 1.419922 CGACGAATCAACGGCCTTG 59.580 57.895 0.00 4.82 38.13 3.61
958 1005 1.740296 CCGACGAATCAACGGCCTT 60.740 57.895 0.00 0.00 40.19 4.35
959 1006 2.125673 CCGACGAATCAACGGCCT 60.126 61.111 0.00 0.00 40.19 5.19
960 1007 3.192922 CCCGACGAATCAACGGCC 61.193 66.667 9.04 0.00 44.45 6.13
961 1008 2.125832 TCCCGACGAATCAACGGC 60.126 61.111 9.04 0.00 44.45 5.68
962 1009 2.165301 GCTCCCGACGAATCAACGG 61.165 63.158 0.00 7.85 45.24 4.44
980 1027 4.514577 CCGAGTACCGCTGCCTGG 62.515 72.222 0.00 0.00 36.84 4.45
993 1040 0.037882 CGATGTGATCCATCCCCGAG 60.038 60.000 14.72 2.11 46.10 4.63
998 1045 0.946221 GCCGACGATGTGATCCATCC 60.946 60.000 14.72 5.18 46.10 3.51
1102 1149 9.099454 AGCAAGGAGAAAAATAATAGAGTAACG 57.901 33.333 0.00 0.00 0.00 3.18
1114 1161 5.046376 CCATACCCAAAGCAAGGAGAAAAAT 60.046 40.000 0.00 0.00 0.00 1.82
1115 1162 4.283212 CCATACCCAAAGCAAGGAGAAAAA 59.717 41.667 0.00 0.00 0.00 1.94
1116 1163 3.831911 CCATACCCAAAGCAAGGAGAAAA 59.168 43.478 0.00 0.00 0.00 2.29
1131 1184 1.215423 AGCATCTTGGTTCCCATACCC 59.785 52.381 0.00 0.00 37.39 3.69
1134 1187 2.846206 AGTCAGCATCTTGGTTCCCATA 59.154 45.455 0.00 0.00 31.53 2.74
1142 1195 1.201647 CCAGCAAAGTCAGCATCTTGG 59.798 52.381 0.00 0.00 0.00 3.61
1194 1247 3.999297 GACGGCGACCTCCTCTCCT 62.999 68.421 16.62 0.00 0.00 3.69
1226 1279 4.353191 TGGTAGAGGATAGTAGGACGGAAT 59.647 45.833 0.00 0.00 0.00 3.01
1245 1298 5.603596 TCAAGTAAACGAAAGCTCTTGGTA 58.396 37.500 7.45 0.00 34.82 3.25
1248 1301 6.658831 TCAATCAAGTAAACGAAAGCTCTTG 58.341 36.000 0.00 0.00 35.21 3.02
1254 1307 9.611284 TGAATGAATCAATCAAGTAAACGAAAG 57.389 29.630 0.00 0.00 42.54 2.62
1258 1311 6.193410 CGCTGAATGAATCAATCAAGTAAACG 59.807 38.462 2.40 0.00 42.54 3.60
1271 1324 2.790468 GCTGTTGCTCGCTGAATGAATC 60.790 50.000 0.00 0.00 36.03 2.52
1273 1326 0.518636 GCTGTTGCTCGCTGAATGAA 59.481 50.000 0.00 0.00 36.03 2.57
1274 1327 2.165380 GCTGTTGCTCGCTGAATGA 58.835 52.632 0.00 0.00 36.03 2.57
1275 1328 4.759564 GCTGTTGCTCGCTGAATG 57.240 55.556 0.00 0.00 36.03 2.67
1285 1338 1.458827 CGACTCTTCTCAAGCTGTTGC 59.541 52.381 0.00 0.00 40.05 4.17
1286 1339 1.458827 GCGACTCTTCTCAAGCTGTTG 59.541 52.381 0.00 0.00 34.67 3.33
1287 1340 1.069204 TGCGACTCTTCTCAAGCTGTT 59.931 47.619 0.00 0.00 0.00 3.16
1288 1341 0.676184 TGCGACTCTTCTCAAGCTGT 59.324 50.000 0.00 0.00 0.00 4.40
1306 1359 3.912157 CGCAAGCAGCAAACTGTG 58.088 55.556 0.00 0.00 46.30 3.66
1322 1375 7.516481 CATCTTATGATGGTGATCTTTTAGCG 58.484 38.462 10.12 0.00 44.63 4.26
1353 1406 4.732285 ACAAGACAAGCATTTCACTACG 57.268 40.909 0.00 0.00 0.00 3.51
1354 1407 5.821204 ACAACAAGACAAGCATTTCACTAC 58.179 37.500 0.00 0.00 0.00 2.73
1370 1423 6.586844 GCTAAACTGAGACTAGGTACAACAAG 59.413 42.308 0.00 0.00 0.00 3.16
1374 1427 7.120873 CACTAGCTAAACTGAGACTAGGTACAA 59.879 40.741 0.00 0.00 35.67 2.41
1383 1436 5.924475 TTTTGCACTAGCTAAACTGAGAC 57.076 39.130 0.00 0.00 39.82 3.36
1384 1437 8.792830 AATATTTTGCACTAGCTAAACTGAGA 57.207 30.769 0.00 0.00 45.50 3.27
1401 1454 1.000717 CCCCGGCGGCTAAATATTTTG 60.001 52.381 23.20 5.62 0.00 2.44
1533 1586 3.258872 TCAAAGAAAGGTCAATGGCCATG 59.741 43.478 21.63 13.71 0.00 3.66
1572 1625 2.299867 ACCATCAGCAACCAATCAAACC 59.700 45.455 0.00 0.00 0.00 3.27
1576 1629 2.583024 TCACCATCAGCAACCAATCA 57.417 45.000 0.00 0.00 0.00 2.57
1741 1800 1.336056 ACGGTCTTGAGCGAGAACTTC 60.336 52.381 25.45 0.00 31.02 3.01
1771 1830 2.568509 TGTTCTCACCATCTGATCAGCA 59.431 45.455 18.36 7.53 0.00 4.41
1863 1939 3.243704 TGGAATGTTTGGCGAAAGGAAAG 60.244 43.478 0.00 0.00 0.00 2.62
1864 1940 2.695666 TGGAATGTTTGGCGAAAGGAAA 59.304 40.909 0.00 0.00 0.00 3.13
1865 1941 2.295909 CTGGAATGTTTGGCGAAAGGAA 59.704 45.455 0.00 0.00 0.00 3.36
1866 1942 1.885887 CTGGAATGTTTGGCGAAAGGA 59.114 47.619 0.00 0.00 0.00 3.36
1988 2064 4.035612 AGCAGAGAGGCGGATATAAGTA 57.964 45.455 0.00 0.00 39.27 2.24
2020 2097 6.600032 AGATGGTAGTCTGTAGTACAAGAGTG 59.400 42.308 4.21 0.00 33.78 3.51
2032 2109 7.990886 TGACTTTTAAACAAGATGGTAGTCTGT 59.009 33.333 10.57 0.00 32.75 3.41
2089 2178 4.442706 ACACACTACACCATAAGCTATGC 58.557 43.478 0.00 0.00 34.85 3.14
2100 2189 9.554724 CAATTAATAACATCAACACACTACACC 57.445 33.333 0.00 0.00 0.00 4.16
2250 2340 4.201910 GCATGTTAACACGACCAATAGCAT 60.202 41.667 11.22 0.00 0.00 3.79
2251 2341 3.126171 GCATGTTAACACGACCAATAGCA 59.874 43.478 11.22 0.00 0.00 3.49
2252 2342 3.374058 AGCATGTTAACACGACCAATAGC 59.626 43.478 11.22 4.42 0.00 2.97
2253 2343 5.106712 ACAAGCATGTTAACACGACCAATAG 60.107 40.000 11.22 0.00 35.91 1.73
2254 2344 4.757657 ACAAGCATGTTAACACGACCAATA 59.242 37.500 11.22 0.00 35.91 1.90
2282 2374 1.229428 TACAGCAGAAGCAGCAACAC 58.771 50.000 0.00 0.00 45.49 3.32
2338 2430 6.155910 ACAGCCTATATCAATGGACCATCTAG 59.844 42.308 7.63 1.29 0.00 2.43
2364 2456 5.251764 ACCTTCTCTGTAACTTACGCTCTA 58.748 41.667 0.00 0.00 0.00 2.43
2368 2460 4.437772 AGACCTTCTCTGTAACTTACGC 57.562 45.455 0.00 0.00 0.00 4.42
2369 2461 7.759465 TCAATAGACCTTCTCTGTAACTTACG 58.241 38.462 0.00 0.00 0.00 3.18
2389 2481 9.737844 TTGCATAACTGATTGCCTATATCAATA 57.262 29.630 0.00 0.00 38.08 1.90
2406 2498 4.580580 GCTTATGGCCTTAGTTGCATAACT 59.419 41.667 3.32 0.00 41.55 2.24
2451 2547 9.857656 AGTTGGATTCAGAAATATATCATGTGT 57.142 29.630 0.00 0.00 0.00 3.72
2582 2678 4.211794 GCCGCAGTACAAGTAGTTTAAACA 59.788 41.667 20.06 3.98 0.00 2.83
2603 2699 7.872483 CCCCTGTAACATCATTTATATTTTGCC 59.128 37.037 0.00 0.00 0.00 4.52
2824 2920 1.135460 GCTTTGCTCTGCATCAGAACC 60.135 52.381 0.00 0.00 40.18 3.62
2825 2921 1.538512 TGCTTTGCTCTGCATCAGAAC 59.461 47.619 0.00 0.00 40.18 3.01
2908 3004 7.924947 AGCATGTATGGAATGATAGATATGACG 59.075 37.037 0.00 0.00 0.00 4.35
2995 3091 5.122396 GCTGTTGAACGTAGAAAGATGGATT 59.878 40.000 0.00 0.00 0.00 3.01
3010 3106 1.588082 CCATGGCAGGCTGTTGAAC 59.412 57.895 17.16 0.00 0.00 3.18
3043 3139 5.819901 GTCATATTTCTGCTTCTTAGTGCCT 59.180 40.000 0.00 0.00 0.00 4.75
3182 3281 4.021916 GGGTAAGACTTGCAGAGTACCTA 58.978 47.826 5.62 2.35 39.19 3.08
3320 3419 4.862371 AGAACAAGGTAAAGTTGGTCCAA 58.138 39.130 0.00 0.00 41.76 3.53
3326 3427 9.185192 GAAATTCATGAGAACAAGGTAAAGTTG 57.815 33.333 0.00 0.00 36.39 3.16
3620 3721 7.807977 AGTTTCATTACAACAACTCTCATGT 57.192 32.000 0.00 0.00 0.00 3.21
3943 4044 0.684479 TCTCCACGGTCCTCTCCATG 60.684 60.000 0.00 0.00 0.00 3.66
3944 4045 0.396417 CTCTCCACGGTCCTCTCCAT 60.396 60.000 0.00 0.00 0.00 3.41
3997 4098 2.008329 CTTGATGCAACTGCTCTCCTC 58.992 52.381 2.95 0.00 42.66 3.71
4138 4239 2.435059 GCCCTTGACTCGCTCACC 60.435 66.667 0.00 0.00 0.00 4.02
4265 4366 2.534533 GGGTTCCCTTGTCCCCCT 60.535 66.667 0.00 0.00 35.52 4.79
4277 4378 2.359107 GGGTTCGGGTTCGGGTTC 60.359 66.667 0.00 0.00 36.95 3.62
4278 4379 4.318949 CGGGTTCGGGTTCGGGTT 62.319 66.667 0.00 0.00 36.95 4.11
4280 4381 4.446413 CTCGGGTTCGGGTTCGGG 62.446 72.222 0.00 0.00 36.95 5.14
4281 4382 2.934570 TTCTCGGGTTCGGGTTCGG 61.935 63.158 0.00 0.00 38.21 4.30
4282 4383 1.735559 GTTCTCGGGTTCGGGTTCG 60.736 63.158 0.00 0.00 38.21 3.95
4360 4461 1.369625 GCTGTTGACGAATAGGGTGG 58.630 55.000 0.00 0.00 0.00 4.61
4361 4462 1.369625 GGCTGTTGACGAATAGGGTG 58.630 55.000 0.00 0.00 0.00 4.61
4362 4463 0.252197 GGGCTGTTGACGAATAGGGT 59.748 55.000 0.00 0.00 0.00 4.34
4412 4513 3.055385 GTGATACTACCAACAGGCTGGAA 60.055 47.826 20.34 0.00 38.96 3.53
4634 4738 5.305585 AGAAAATTACAGCAAAGTCTCGGA 58.694 37.500 0.00 0.00 0.00 4.55
4646 4750 8.614469 AACAAAGAGAGGAGAGAAAATTACAG 57.386 34.615 0.00 0.00 0.00 2.74
4651 4755 7.682981 GCAACAAACAAAGAGAGGAGAGAAAAT 60.683 37.037 0.00 0.00 0.00 1.82
4655 4759 4.130118 GCAACAAACAAAGAGAGGAGAGA 58.870 43.478 0.00 0.00 0.00 3.10
4656 4760 3.879295 TGCAACAAACAAAGAGAGGAGAG 59.121 43.478 0.00 0.00 0.00 3.20
4657 4761 3.884895 TGCAACAAACAAAGAGAGGAGA 58.115 40.909 0.00 0.00 0.00 3.71
4658 4762 4.354587 GTTGCAACAAACAAAGAGAGGAG 58.645 43.478 24.52 0.00 0.00 3.69
4662 4766 4.016444 AGAGGTTGCAACAAACAAAGAGA 58.984 39.130 29.55 0.00 0.00 3.10
4663 4767 4.107622 CAGAGGTTGCAACAAACAAAGAG 58.892 43.478 29.55 6.69 0.00 2.85
4664 4768 3.119173 CCAGAGGTTGCAACAAACAAAGA 60.119 43.478 29.55 0.00 0.00 2.52
4665 4769 3.119173 TCCAGAGGTTGCAACAAACAAAG 60.119 43.478 29.55 12.38 0.00 2.77
4666 4770 2.828520 TCCAGAGGTTGCAACAAACAAA 59.171 40.909 29.55 9.11 0.00 2.83
4667 4771 2.451490 TCCAGAGGTTGCAACAAACAA 58.549 42.857 29.55 8.60 0.00 2.83
4744 4850 7.453393 TGCAAGAATATCTATAACCAAGGAGG 58.547 38.462 0.00 0.00 45.67 4.30
4785 4891 9.936759 TTCTTGTACAATCACAGTTCATATACA 57.063 29.630 9.13 0.00 0.00 2.29
4792 4898 5.858581 GCCATTTCTTGTACAATCACAGTTC 59.141 40.000 9.13 0.00 0.00 3.01
4797 4932 5.183904 AGAAGGCCATTTCTTGTACAATCAC 59.816 40.000 9.13 0.00 33.74 3.06
4865 5002 3.771798 TCGTTTTGGTTTTACTGGCAAC 58.228 40.909 0.00 0.00 0.00 4.17
4867 5004 4.657436 AATCGTTTTGGTTTTACTGGCA 57.343 36.364 0.00 0.00 0.00 4.92
4868 5005 5.977171 AAAATCGTTTTGGTTTTACTGGC 57.023 34.783 0.00 0.00 0.00 4.85
4895 5044 5.988310 TGTTATTCCTCTGTTCTAACGGA 57.012 39.130 4.40 4.40 41.78 4.69
5011 5297 8.992073 GTTATTTTACTTCCGTGGACTTTTCTA 58.008 33.333 0.00 0.00 0.00 2.10
5058 5344 2.447572 TCCCACCTGCCAGTGACA 60.448 61.111 4.85 0.00 40.34 3.58
5078 5364 4.101448 GGGGACGGCTGACATGCT 62.101 66.667 0.00 0.00 0.00 3.79
5090 5376 1.302366 AAAGTGAAAACGACGGGGAC 58.698 50.000 0.00 0.00 0.00 4.46
5115 5401 2.740447 GGCGTGATTTTTACTCCGTTCT 59.260 45.455 0.00 0.00 0.00 3.01
5121 5408 1.132453 GGCCAGGCGTGATTTTTACTC 59.868 52.381 8.24 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.