Multiple sequence alignment - TraesCS6B01G415300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G415300 chr6B 100.000 2597 0 0 1 2597 688064928 688062332 0.000000e+00 4796.0
1 TraesCS6B01G415300 chr6B 89.307 1674 140 12 328 1996 688125243 688123604 0.000000e+00 2063.0
2 TraesCS6B01G415300 chr6B 90.880 1250 106 3 355 1596 688033490 688032241 0.000000e+00 1670.0
3 TraesCS6B01G415300 chr6B 83.767 1306 203 7 395 1693 687956210 687957513 0.000000e+00 1229.0
4 TraesCS6B01G415300 chr6B 83.439 1262 203 4 344 1600 687732945 687734205 0.000000e+00 1168.0
5 TraesCS6B01G415300 chr6D 92.285 1672 110 10 329 1996 452931193 452929537 0.000000e+00 2355.0
6 TraesCS6B01G415300 chr6D 84.272 1367 202 10 327 1685 452907478 452908839 0.000000e+00 1321.0
7 TraesCS6B01G415300 chr6D 83.531 1263 203 4 343 1600 452841376 452842638 0.000000e+00 1175.0
8 TraesCS6B01G415300 chr6A 88.121 1389 144 8 342 1720 598925571 598924194 0.000000e+00 1631.0
9 TraesCS6B01G415300 chr6A 83.617 1349 210 8 354 1692 598860595 598861942 0.000000e+00 1256.0
10 TraesCS6B01G415300 chr1B 93.677 601 38 0 1997 2597 442197618 442197018 0.000000e+00 900.0
11 TraesCS6B01G415300 chr1B 91.291 333 20 6 1 326 630741270 630741600 1.830000e-121 446.0
12 TraesCS6B01G415300 chr4B 92.727 605 43 1 1994 2597 643335035 643334431 0.000000e+00 872.0
13 TraesCS6B01G415300 chr4B 91.045 603 50 3 1997 2597 552661635 552662235 0.000000e+00 811.0
14 TraesCS6B01G415300 chr1D 90.050 603 52 7 1998 2597 423856038 423855441 0.000000e+00 774.0
15 TraesCS6B01G415300 chr7D 89.718 603 55 6 1998 2597 581690073 581689475 0.000000e+00 763.0
16 TraesCS6B01G415300 chr3A 89.735 604 53 8 1997 2597 724215861 724216458 0.000000e+00 763.0
17 TraesCS6B01G415300 chr3A 86.765 340 27 14 1 326 552539563 552539228 1.900000e-96 363.0
18 TraesCS6B01G415300 chr5A 89.404 604 53 10 1998 2597 535713292 535713888 0.000000e+00 750.0
19 TraesCS6B01G415300 chr2A 88.411 604 63 6 1997 2597 487789381 487788782 0.000000e+00 721.0
20 TraesCS6B01G415300 chr2A 92.647 68 4 1 1929 1995 617722135 617722202 2.130000e-16 97.1
21 TraesCS6B01G415300 chr3B 88.935 479 47 4 1998 2473 597264572 597265047 1.040000e-163 586.0
22 TraesCS6B01G415300 chr3B 86.022 93 12 1 1907 1998 26519539 26519447 5.910000e-17 99.0
23 TraesCS6B01G415300 chr3D 81.197 351 37 19 1 329 96440688 96440345 3.320000e-64 255.0
24 TraesCS6B01G415300 chr7B 86.239 218 21 8 114 326 559526917 559527130 7.230000e-56 228.0
25 TraesCS6B01G415300 chr7B 90.435 115 8 1 2 113 559525055 559525169 5.790000e-32 148.0
26 TraesCS6B01G415300 chr4D 79.191 346 44 18 1 325 214937595 214937933 5.630000e-52 215.0
27 TraesCS6B01G415300 chr5D 77.714 350 46 20 1 327 565268622 565268282 4.410000e-43 185.0
28 TraesCS6B01G415300 chr5B 76.970 330 60 16 1 326 45821012 45821329 9.550000e-40 174.0
29 TraesCS6B01G415300 chr5B 75.076 329 66 16 1 326 693654836 693655151 3.480000e-29 139.0
30 TraesCS6B01G415300 chr2D 76.765 340 51 21 1 327 68800552 68800228 5.750000e-37 165.0
31 TraesCS6B01G415300 chr4A 86.916 107 11 3 1892 1998 368127667 368127564 1.630000e-22 117.0
32 TraesCS6B01G415300 chr2B 85.577 104 10 5 1893 1995 559129430 559129529 1.270000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G415300 chr6B 688062332 688064928 2596 True 4796 4796 100.000 1 2597 1 chr6B.!!$R2 2596
1 TraesCS6B01G415300 chr6B 688123604 688125243 1639 True 2063 2063 89.307 328 1996 1 chr6B.!!$R3 1668
2 TraesCS6B01G415300 chr6B 688032241 688033490 1249 True 1670 1670 90.880 355 1596 1 chr6B.!!$R1 1241
3 TraesCS6B01G415300 chr6B 687956210 687957513 1303 False 1229 1229 83.767 395 1693 1 chr6B.!!$F2 1298
4 TraesCS6B01G415300 chr6B 687732945 687734205 1260 False 1168 1168 83.439 344 1600 1 chr6B.!!$F1 1256
5 TraesCS6B01G415300 chr6D 452929537 452931193 1656 True 2355 2355 92.285 329 1996 1 chr6D.!!$R1 1667
6 TraesCS6B01G415300 chr6D 452907478 452908839 1361 False 1321 1321 84.272 327 1685 1 chr6D.!!$F2 1358
7 TraesCS6B01G415300 chr6D 452841376 452842638 1262 False 1175 1175 83.531 343 1600 1 chr6D.!!$F1 1257
8 TraesCS6B01G415300 chr6A 598924194 598925571 1377 True 1631 1631 88.121 342 1720 1 chr6A.!!$R1 1378
9 TraesCS6B01G415300 chr6A 598860595 598861942 1347 False 1256 1256 83.617 354 1692 1 chr6A.!!$F1 1338
10 TraesCS6B01G415300 chr1B 442197018 442197618 600 True 900 900 93.677 1997 2597 1 chr1B.!!$R1 600
11 TraesCS6B01G415300 chr4B 643334431 643335035 604 True 872 872 92.727 1994 2597 1 chr4B.!!$R1 603
12 TraesCS6B01G415300 chr4B 552661635 552662235 600 False 811 811 91.045 1997 2597 1 chr4B.!!$F1 600
13 TraesCS6B01G415300 chr1D 423855441 423856038 597 True 774 774 90.050 1998 2597 1 chr1D.!!$R1 599
14 TraesCS6B01G415300 chr7D 581689475 581690073 598 True 763 763 89.718 1998 2597 1 chr7D.!!$R1 599
15 TraesCS6B01G415300 chr3A 724215861 724216458 597 False 763 763 89.735 1997 2597 1 chr3A.!!$F1 600
16 TraesCS6B01G415300 chr5A 535713292 535713888 596 False 750 750 89.404 1998 2597 1 chr5A.!!$F1 599
17 TraesCS6B01G415300 chr2A 487788782 487789381 599 True 721 721 88.411 1997 2597 1 chr2A.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.031716 AGGGAGAGCTACTCATGGCA 60.032 55.0 13.06 0.0 46.54 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1664 0.035739 GGAGTCCCGCCAAACACTAA 59.964 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.853007 CAGGATGAGGAAGAAGGAATTGT 58.147 43.478 0.00 0.00 39.69 2.71
23 24 4.639310 CAGGATGAGGAAGAAGGAATTGTG 59.361 45.833 0.00 0.00 39.69 3.33
24 25 3.950395 GGATGAGGAAGAAGGAATTGTGG 59.050 47.826 0.00 0.00 0.00 4.17
25 26 3.439857 TGAGGAAGAAGGAATTGTGGG 57.560 47.619 0.00 0.00 0.00 4.61
26 27 2.716424 TGAGGAAGAAGGAATTGTGGGT 59.284 45.455 0.00 0.00 0.00 4.51
27 28 3.084786 GAGGAAGAAGGAATTGTGGGTG 58.915 50.000 0.00 0.00 0.00 4.61
28 29 2.716424 AGGAAGAAGGAATTGTGGGTGA 59.284 45.455 0.00 0.00 0.00 4.02
29 30 3.140144 AGGAAGAAGGAATTGTGGGTGAA 59.860 43.478 0.00 0.00 0.00 3.18
30 31 3.895041 GGAAGAAGGAATTGTGGGTGAAA 59.105 43.478 0.00 0.00 0.00 2.69
31 32 4.528206 GGAAGAAGGAATTGTGGGTGAAAT 59.472 41.667 0.00 0.00 0.00 2.17
32 33 5.714806 GGAAGAAGGAATTGTGGGTGAAATA 59.285 40.000 0.00 0.00 0.00 1.40
33 34 6.381133 GGAAGAAGGAATTGTGGGTGAAATAT 59.619 38.462 0.00 0.00 0.00 1.28
34 35 7.093333 GGAAGAAGGAATTGTGGGTGAAATATT 60.093 37.037 0.00 0.00 0.00 1.28
35 36 8.893563 AAGAAGGAATTGTGGGTGAAATATTA 57.106 30.769 0.00 0.00 0.00 0.98
36 37 9.492730 AAGAAGGAATTGTGGGTGAAATATTAT 57.507 29.630 0.00 0.00 0.00 1.28
37 38 9.136323 AGAAGGAATTGTGGGTGAAATATTATC 57.864 33.333 0.00 0.00 0.00 1.75
38 39 8.837099 AAGGAATTGTGGGTGAAATATTATCA 57.163 30.769 0.00 0.00 0.00 2.15
39 40 8.469309 AGGAATTGTGGGTGAAATATTATCAG 57.531 34.615 0.00 0.00 0.00 2.90
40 41 8.281531 AGGAATTGTGGGTGAAATATTATCAGA 58.718 33.333 0.00 0.00 0.00 3.27
41 42 8.912988 GGAATTGTGGGTGAAATATTATCAGAA 58.087 33.333 0.00 0.00 0.00 3.02
42 43 9.956720 GAATTGTGGGTGAAATATTATCAGAAG 57.043 33.333 0.00 0.00 0.00 2.85
43 44 9.699410 AATTGTGGGTGAAATATTATCAGAAGA 57.301 29.630 0.00 0.00 0.00 2.87
44 45 9.699410 ATTGTGGGTGAAATATTATCAGAAGAA 57.301 29.630 0.00 0.00 0.00 2.52
45 46 8.737168 TGTGGGTGAAATATTATCAGAAGAAG 57.263 34.615 0.00 0.00 0.00 2.85
46 47 8.548025 TGTGGGTGAAATATTATCAGAAGAAGA 58.452 33.333 0.00 0.00 0.00 2.87
47 48 9.396022 GTGGGTGAAATATTATCAGAAGAAGAA 57.604 33.333 0.00 0.00 0.00 2.52
48 49 9.618890 TGGGTGAAATATTATCAGAAGAAGAAG 57.381 33.333 0.00 0.00 0.00 2.85
49 50 9.838339 GGGTGAAATATTATCAGAAGAAGAAGA 57.162 33.333 0.00 0.00 0.00 2.87
52 53 9.534565 TGAAATATTATCAGAAGAAGAAGACGG 57.465 33.333 0.00 0.00 0.00 4.79
53 54 9.751542 GAAATATTATCAGAAGAAGAAGACGGA 57.248 33.333 0.00 0.00 0.00 4.69
55 56 9.757227 AATATTATCAGAAGAAGAAGACGGAAG 57.243 33.333 0.00 0.00 0.00 3.46
56 57 3.944055 TCAGAAGAAGAAGACGGAAGG 57.056 47.619 0.00 0.00 0.00 3.46
57 58 3.497332 TCAGAAGAAGAAGACGGAAGGA 58.503 45.455 0.00 0.00 0.00 3.36
58 59 4.090090 TCAGAAGAAGAAGACGGAAGGAT 58.910 43.478 0.00 0.00 0.00 3.24
59 60 4.081972 TCAGAAGAAGAAGACGGAAGGATG 60.082 45.833 0.00 0.00 0.00 3.51
60 61 3.196685 AGAAGAAGAAGACGGAAGGATGG 59.803 47.826 0.00 0.00 0.00 3.51
61 62 2.541466 AGAAGAAGACGGAAGGATGGT 58.459 47.619 0.00 0.00 0.00 3.55
62 63 2.234908 AGAAGAAGACGGAAGGATGGTG 59.765 50.000 0.00 0.00 0.00 4.17
63 64 0.250513 AGAAGACGGAAGGATGGTGC 59.749 55.000 0.00 0.00 0.00 5.01
64 65 1.079127 AAGACGGAAGGATGGTGCG 60.079 57.895 0.00 0.00 35.75 5.34
65 66 2.511600 GACGGAAGGATGGTGCGG 60.512 66.667 0.00 0.00 33.68 5.69
66 67 3.310860 GACGGAAGGATGGTGCGGT 62.311 63.158 0.00 0.00 33.68 5.68
67 68 1.952102 GACGGAAGGATGGTGCGGTA 61.952 60.000 0.00 0.00 33.68 4.02
68 69 1.335132 ACGGAAGGATGGTGCGGTAT 61.335 55.000 0.00 0.00 33.68 2.73
69 70 0.179056 CGGAAGGATGGTGCGGTATT 60.179 55.000 0.00 0.00 0.00 1.89
70 71 1.308998 GGAAGGATGGTGCGGTATTG 58.691 55.000 0.00 0.00 0.00 1.90
71 72 1.134220 GGAAGGATGGTGCGGTATTGA 60.134 52.381 0.00 0.00 0.00 2.57
72 73 2.213499 GAAGGATGGTGCGGTATTGAG 58.787 52.381 0.00 0.00 0.00 3.02
73 74 0.469917 AGGATGGTGCGGTATTGAGG 59.530 55.000 0.00 0.00 0.00 3.86
74 75 0.535102 GGATGGTGCGGTATTGAGGG 60.535 60.000 0.00 0.00 0.00 4.30
75 76 0.468226 GATGGTGCGGTATTGAGGGA 59.532 55.000 0.00 0.00 0.00 4.20
76 77 0.469917 ATGGTGCGGTATTGAGGGAG 59.530 55.000 0.00 0.00 0.00 4.30
77 78 0.616395 TGGTGCGGTATTGAGGGAGA 60.616 55.000 0.00 0.00 0.00 3.71
78 79 0.105039 GGTGCGGTATTGAGGGAGAG 59.895 60.000 0.00 0.00 0.00 3.20
79 80 0.530870 GTGCGGTATTGAGGGAGAGC 60.531 60.000 0.00 0.00 0.00 4.09
80 81 0.687757 TGCGGTATTGAGGGAGAGCT 60.688 55.000 0.00 0.00 0.00 4.09
81 82 1.329256 GCGGTATTGAGGGAGAGCTA 58.671 55.000 0.00 0.00 0.00 3.32
82 83 1.000052 GCGGTATTGAGGGAGAGCTAC 60.000 57.143 0.00 0.00 0.00 3.58
83 84 2.588620 CGGTATTGAGGGAGAGCTACT 58.411 52.381 0.00 0.00 0.00 2.57
84 85 2.554893 CGGTATTGAGGGAGAGCTACTC 59.445 54.545 0.00 0.00 44.24 2.59
85 86 3.567397 GGTATTGAGGGAGAGCTACTCA 58.433 50.000 13.06 9.67 46.54 3.41
86 87 4.156477 GGTATTGAGGGAGAGCTACTCAT 58.844 47.826 13.06 3.71 46.54 2.90
87 88 4.021544 GGTATTGAGGGAGAGCTACTCATG 60.022 50.000 13.06 0.00 46.54 3.07
88 89 2.079170 TGAGGGAGAGCTACTCATGG 57.921 55.000 13.06 0.00 46.54 3.66
89 90 0.678950 GAGGGAGAGCTACTCATGGC 59.321 60.000 13.06 0.00 46.54 4.40
90 91 0.031716 AGGGAGAGCTACTCATGGCA 60.032 55.000 13.06 0.00 46.54 4.92
91 92 1.055040 GGGAGAGCTACTCATGGCAT 58.945 55.000 13.06 0.00 46.54 4.40
92 93 1.270732 GGGAGAGCTACTCATGGCATG 60.271 57.143 21.42 21.42 46.54 4.06
93 94 1.690893 GGAGAGCTACTCATGGCATGA 59.309 52.381 27.24 27.24 46.54 3.07
94 95 2.302445 GGAGAGCTACTCATGGCATGAT 59.698 50.000 28.91 20.32 46.54 2.45
95 96 3.327626 GAGAGCTACTCATGGCATGATG 58.672 50.000 28.91 23.09 44.36 3.07
96 97 2.970640 AGAGCTACTCATGGCATGATGA 59.029 45.455 28.91 18.53 38.85 2.92
104 105 4.976540 TCATGGCATGATGAGAAGAGAT 57.023 40.909 25.63 0.00 33.59 2.75
105 106 4.642429 TCATGGCATGATGAGAAGAGATG 58.358 43.478 25.63 0.00 33.59 2.90
106 107 4.347000 TCATGGCATGATGAGAAGAGATGA 59.653 41.667 25.63 0.00 33.59 2.92
107 108 4.976540 TGGCATGATGAGAAGAGATGAT 57.023 40.909 0.00 0.00 0.00 2.45
108 109 4.642429 TGGCATGATGAGAAGAGATGATG 58.358 43.478 0.00 0.00 0.00 3.07
109 110 4.004314 GGCATGATGAGAAGAGATGATGG 58.996 47.826 0.00 0.00 0.00 3.51
110 111 4.262938 GGCATGATGAGAAGAGATGATGGA 60.263 45.833 0.00 0.00 0.00 3.41
111 112 4.932799 GCATGATGAGAAGAGATGATGGAG 59.067 45.833 0.00 0.00 0.00 3.86
112 113 5.279556 GCATGATGAGAAGAGATGATGGAGA 60.280 44.000 0.00 0.00 0.00 3.71
113 114 6.575451 GCATGATGAGAAGAGATGATGGAGAT 60.575 42.308 0.00 0.00 0.00 2.75
114 115 6.997942 TGATGAGAAGAGATGATGGAGATT 57.002 37.500 0.00 0.00 0.00 2.40
115 116 6.995364 TGATGAGAAGAGATGATGGAGATTC 58.005 40.000 0.00 0.00 0.00 2.52
116 117 5.804944 TGAGAAGAGATGATGGAGATTCC 57.195 43.478 0.00 0.00 36.96 3.01
125 126 2.311287 TGGAGATTCCAAGCCTCCC 58.689 57.895 0.00 0.00 45.00 4.30
126 127 1.281925 TGGAGATTCCAAGCCTCCCC 61.282 60.000 0.00 0.00 45.00 4.81
127 128 1.534203 GAGATTCCAAGCCTCCCCC 59.466 63.158 0.00 0.00 0.00 5.40
128 129 2.193248 GATTCCAAGCCTCCCCCG 59.807 66.667 0.00 0.00 0.00 5.73
129 130 2.286121 ATTCCAAGCCTCCCCCGA 60.286 61.111 0.00 0.00 0.00 5.14
130 131 2.330924 GATTCCAAGCCTCCCCCGAG 62.331 65.000 0.00 0.00 35.72 4.63
131 132 3.864983 TTCCAAGCCTCCCCCGAGT 62.865 63.158 0.00 0.00 33.93 4.18
132 133 3.330720 CCAAGCCTCCCCCGAGTT 61.331 66.667 0.00 0.00 33.93 3.01
133 134 2.045926 CAAGCCTCCCCCGAGTTG 60.046 66.667 0.00 0.00 33.93 3.16
134 135 2.529389 AAGCCTCCCCCGAGTTGT 60.529 61.111 0.00 0.00 33.93 3.32
135 136 2.895424 AAGCCTCCCCCGAGTTGTG 61.895 63.158 0.00 0.00 33.93 3.33
136 137 4.410400 GCCTCCCCCGAGTTGTGG 62.410 72.222 0.00 0.00 33.93 4.17
137 138 2.606519 CCTCCCCCGAGTTGTGGA 60.607 66.667 0.00 0.00 33.93 4.02
138 139 2.221299 CCTCCCCCGAGTTGTGGAA 61.221 63.158 0.00 0.00 33.93 3.53
139 140 1.562672 CCTCCCCCGAGTTGTGGAAT 61.563 60.000 0.00 0.00 33.93 3.01
140 141 0.328258 CTCCCCCGAGTTGTGGAATT 59.672 55.000 0.00 0.00 0.00 2.17
141 142 1.557832 CTCCCCCGAGTTGTGGAATTA 59.442 52.381 0.00 0.00 0.00 1.40
142 143 1.557832 TCCCCCGAGTTGTGGAATTAG 59.442 52.381 0.00 0.00 0.00 1.73
143 144 1.280998 CCCCCGAGTTGTGGAATTAGT 59.719 52.381 0.00 0.00 0.00 2.24
144 145 2.629051 CCCCGAGTTGTGGAATTAGTC 58.371 52.381 0.00 0.00 0.00 2.59
145 146 2.236395 CCCCGAGTTGTGGAATTAGTCT 59.764 50.000 0.00 0.00 0.00 3.24
146 147 3.307480 CCCCGAGTTGTGGAATTAGTCTT 60.307 47.826 0.00 0.00 0.00 3.01
147 148 4.324267 CCCGAGTTGTGGAATTAGTCTTT 58.676 43.478 0.00 0.00 0.00 2.52
148 149 5.484715 CCCGAGTTGTGGAATTAGTCTTTA 58.515 41.667 0.00 0.00 0.00 1.85
149 150 5.935789 CCCGAGTTGTGGAATTAGTCTTTAA 59.064 40.000 0.00 0.00 0.00 1.52
150 151 6.428771 CCCGAGTTGTGGAATTAGTCTTTAAA 59.571 38.462 0.00 0.00 0.00 1.52
151 152 7.120726 CCCGAGTTGTGGAATTAGTCTTTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
152 153 8.512138 CCGAGTTGTGGAATTAGTCTTTAAATT 58.488 33.333 0.00 0.00 0.00 1.82
153 154 9.543018 CGAGTTGTGGAATTAGTCTTTAAATTC 57.457 33.333 0.00 0.00 40.03 2.17
176 177 7.323049 TCTTGTCAGTAGACTATTGAGTAGC 57.677 40.000 7.87 0.00 45.20 3.58
177 178 7.113437 TCTTGTCAGTAGACTATTGAGTAGCT 58.887 38.462 7.87 0.00 45.20 3.32
178 179 6.685527 TGTCAGTAGACTATTGAGTAGCTG 57.314 41.667 7.87 0.00 45.20 4.24
179 180 5.590663 TGTCAGTAGACTATTGAGTAGCTGG 59.409 44.000 7.87 0.00 45.20 4.85
180 181 5.009210 GTCAGTAGACTATTGAGTAGCTGGG 59.991 48.000 7.87 0.00 41.64 4.45
181 182 5.104067 TCAGTAGACTATTGAGTAGCTGGGA 60.104 44.000 3.69 0.00 35.45 4.37
182 183 5.240623 CAGTAGACTATTGAGTAGCTGGGAG 59.759 48.000 0.00 0.00 35.45 4.30
183 184 4.258457 AGACTATTGAGTAGCTGGGAGT 57.742 45.455 0.00 0.00 35.45 3.85
184 185 3.957497 AGACTATTGAGTAGCTGGGAGTG 59.043 47.826 0.00 0.00 35.45 3.51
185 186 3.702045 GACTATTGAGTAGCTGGGAGTGT 59.298 47.826 0.00 0.00 35.45 3.55
186 187 4.868268 ACTATTGAGTAGCTGGGAGTGTA 58.132 43.478 0.00 0.00 32.65 2.90
187 188 5.459505 ACTATTGAGTAGCTGGGAGTGTAT 58.540 41.667 0.00 0.00 32.65 2.29
188 189 4.679373 ATTGAGTAGCTGGGAGTGTATG 57.321 45.455 0.00 0.00 0.00 2.39
189 190 3.382083 TGAGTAGCTGGGAGTGTATGA 57.618 47.619 0.00 0.00 0.00 2.15
190 191 3.291584 TGAGTAGCTGGGAGTGTATGAG 58.708 50.000 0.00 0.00 0.00 2.90
191 192 2.625790 GAGTAGCTGGGAGTGTATGAGG 59.374 54.545 0.00 0.00 0.00 3.86
192 193 2.023888 AGTAGCTGGGAGTGTATGAGGT 60.024 50.000 0.00 0.00 0.00 3.85
193 194 1.958288 AGCTGGGAGTGTATGAGGTT 58.042 50.000 0.00 0.00 0.00 3.50
194 195 2.269940 AGCTGGGAGTGTATGAGGTTT 58.730 47.619 0.00 0.00 0.00 3.27
195 196 3.450904 AGCTGGGAGTGTATGAGGTTTA 58.549 45.455 0.00 0.00 0.00 2.01
196 197 4.040755 AGCTGGGAGTGTATGAGGTTTAT 58.959 43.478 0.00 0.00 0.00 1.40
197 198 5.216622 AGCTGGGAGTGTATGAGGTTTATA 58.783 41.667 0.00 0.00 0.00 0.98
198 199 5.305644 AGCTGGGAGTGTATGAGGTTTATAG 59.694 44.000 0.00 0.00 0.00 1.31
199 200 5.542779 CTGGGAGTGTATGAGGTTTATAGC 58.457 45.833 0.00 0.00 0.00 2.97
200 201 4.966168 TGGGAGTGTATGAGGTTTATAGCA 59.034 41.667 0.00 0.00 0.00 3.49
201 202 5.070446 TGGGAGTGTATGAGGTTTATAGCAG 59.930 44.000 0.00 0.00 0.00 4.24
202 203 5.511545 GGGAGTGTATGAGGTTTATAGCAGG 60.512 48.000 0.00 0.00 0.00 4.85
203 204 5.070580 GGAGTGTATGAGGTTTATAGCAGGT 59.929 44.000 0.00 0.00 0.00 4.00
204 205 6.408206 GGAGTGTATGAGGTTTATAGCAGGTT 60.408 42.308 0.00 0.00 0.00 3.50
205 206 6.583562 AGTGTATGAGGTTTATAGCAGGTTC 58.416 40.000 0.00 0.00 0.00 3.62
206 207 6.156256 AGTGTATGAGGTTTATAGCAGGTTCA 59.844 38.462 0.00 0.00 0.00 3.18
207 208 6.992715 GTGTATGAGGTTTATAGCAGGTTCAT 59.007 38.462 0.00 0.00 0.00 2.57
208 209 6.992123 TGTATGAGGTTTATAGCAGGTTCATG 59.008 38.462 0.00 0.00 0.00 3.07
209 210 5.692115 TGAGGTTTATAGCAGGTTCATGA 57.308 39.130 0.00 0.00 0.00 3.07
210 211 6.252599 TGAGGTTTATAGCAGGTTCATGAT 57.747 37.500 0.00 0.00 0.00 2.45
211 212 6.057533 TGAGGTTTATAGCAGGTTCATGATG 58.942 40.000 0.00 0.00 0.00 3.07
212 213 5.380043 AGGTTTATAGCAGGTTCATGATGG 58.620 41.667 0.00 0.00 0.00 3.51
213 214 5.132648 AGGTTTATAGCAGGTTCATGATGGA 59.867 40.000 0.00 0.00 0.00 3.41
214 215 6.006449 GGTTTATAGCAGGTTCATGATGGAT 58.994 40.000 0.00 0.00 0.00 3.41
215 216 6.491403 GGTTTATAGCAGGTTCATGATGGATT 59.509 38.462 0.00 0.00 0.00 3.01
216 217 7.014615 GGTTTATAGCAGGTTCATGATGGATTT 59.985 37.037 0.00 0.00 0.00 2.17
217 218 8.416329 GTTTATAGCAGGTTCATGATGGATTTT 58.584 33.333 0.00 0.00 0.00 1.82
218 219 8.537728 TTATAGCAGGTTCATGATGGATTTTT 57.462 30.769 0.00 0.00 0.00 1.94
219 220 9.639563 TTATAGCAGGTTCATGATGGATTTTTA 57.360 29.630 0.00 0.00 0.00 1.52
220 221 8.716674 ATAGCAGGTTCATGATGGATTTTTAT 57.283 30.769 0.00 0.00 0.00 1.40
221 222 6.812998 AGCAGGTTCATGATGGATTTTTATG 58.187 36.000 0.00 0.00 0.00 1.90
222 223 5.464389 GCAGGTTCATGATGGATTTTTATGC 59.536 40.000 0.00 0.00 0.00 3.14
223 224 5.987347 CAGGTTCATGATGGATTTTTATGCC 59.013 40.000 0.00 0.00 0.00 4.40
224 225 4.984161 GGTTCATGATGGATTTTTATGCCG 59.016 41.667 0.00 0.00 0.00 5.69
225 226 4.852134 TCATGATGGATTTTTATGCCGG 57.148 40.909 0.00 0.00 0.00 6.13
226 227 4.468713 TCATGATGGATTTTTATGCCGGA 58.531 39.130 5.05 0.00 0.00 5.14
227 228 4.520111 TCATGATGGATTTTTATGCCGGAG 59.480 41.667 5.05 0.00 0.00 4.63
228 229 4.163441 TGATGGATTTTTATGCCGGAGA 57.837 40.909 5.05 0.00 0.00 3.71
229 230 4.136796 TGATGGATTTTTATGCCGGAGAG 58.863 43.478 5.05 0.00 0.00 3.20
230 231 2.297701 TGGATTTTTATGCCGGAGAGC 58.702 47.619 5.05 0.00 0.00 4.09
231 232 1.264288 GGATTTTTATGCCGGAGAGCG 59.736 52.381 5.05 0.00 34.65 5.03
232 233 1.940613 GATTTTTATGCCGGAGAGCGT 59.059 47.619 5.05 0.00 34.65 5.07
233 234 1.816074 TTTTTATGCCGGAGAGCGTT 58.184 45.000 5.05 0.00 34.65 4.84
234 235 2.676632 TTTTATGCCGGAGAGCGTTA 57.323 45.000 5.05 0.00 34.65 3.18
235 236 2.676632 TTTATGCCGGAGAGCGTTAA 57.323 45.000 5.05 0.00 34.65 2.01
236 237 2.676632 TTATGCCGGAGAGCGTTAAA 57.323 45.000 5.05 0.00 34.65 1.52
237 238 2.676632 TATGCCGGAGAGCGTTAAAA 57.323 45.000 5.05 0.00 34.65 1.52
238 239 1.084289 ATGCCGGAGAGCGTTAAAAC 58.916 50.000 5.05 0.00 34.65 2.43
239 240 0.952010 TGCCGGAGAGCGTTAAAACC 60.952 55.000 5.05 0.00 34.65 3.27
240 241 0.672711 GCCGGAGAGCGTTAAAACCT 60.673 55.000 5.05 0.00 0.00 3.50
241 242 1.356938 CCGGAGAGCGTTAAAACCTC 58.643 55.000 0.00 0.00 0.00 3.85
242 243 1.067071 CCGGAGAGCGTTAAAACCTCT 60.067 52.381 0.00 11.33 38.44 3.69
243 244 2.260481 CGGAGAGCGTTAAAACCTCTC 58.740 52.381 21.14 21.14 44.13 3.20
245 246 2.619147 GAGAGCGTTAAAACCTCTCCC 58.381 52.381 19.85 6.96 41.87 4.30
246 247 1.067071 AGAGCGTTAAAACCTCTCCCG 60.067 52.381 7.59 0.00 33.93 5.14
247 248 0.672711 AGCGTTAAAACCTCTCCCGC 60.673 55.000 0.00 0.00 39.91 6.13
248 249 1.963190 GCGTTAAAACCTCTCCCGCG 61.963 60.000 0.00 0.00 0.00 6.46
249 250 1.356527 CGTTAAAACCTCTCCCGCGG 61.357 60.000 21.04 21.04 0.00 6.46
250 251 1.022982 GTTAAAACCTCTCCCGCGGG 61.023 60.000 39.13 39.13 0.00 6.13
251 252 2.808181 TTAAAACCTCTCCCGCGGGC 62.808 60.000 39.89 0.00 34.68 6.13
256 257 3.458163 CTCTCCCGCGGGCTGTAA 61.458 66.667 39.89 21.27 34.68 2.41
257 258 2.762459 TCTCCCGCGGGCTGTAAT 60.762 61.111 39.89 0.00 34.68 1.89
258 259 2.588877 CTCCCGCGGGCTGTAATG 60.589 66.667 39.89 17.51 34.68 1.90
259 260 3.078196 TCCCGCGGGCTGTAATGA 61.078 61.111 39.89 17.41 34.68 2.57
260 261 2.124901 CCCGCGGGCTGTAATGAA 60.125 61.111 34.96 0.00 0.00 2.57
261 262 2.180204 CCCGCGGGCTGTAATGAAG 61.180 63.158 34.96 2.62 0.00 3.02
262 263 1.153449 CCGCGGGCTGTAATGAAGA 60.153 57.895 20.10 0.00 0.00 2.87
263 264 0.532862 CCGCGGGCTGTAATGAAGAT 60.533 55.000 20.10 0.00 0.00 2.40
264 265 1.299541 CGCGGGCTGTAATGAAGATT 58.700 50.000 0.00 0.00 0.00 2.40
265 266 1.003545 CGCGGGCTGTAATGAAGATTG 60.004 52.381 0.00 0.00 0.00 2.67
266 267 2.288666 GCGGGCTGTAATGAAGATTGA 58.711 47.619 0.00 0.00 0.00 2.57
267 268 2.880890 GCGGGCTGTAATGAAGATTGAT 59.119 45.455 0.00 0.00 0.00 2.57
268 269 3.316308 GCGGGCTGTAATGAAGATTGATT 59.684 43.478 0.00 0.00 0.00 2.57
269 270 4.515191 GCGGGCTGTAATGAAGATTGATTA 59.485 41.667 0.00 0.00 0.00 1.75
270 271 5.182001 GCGGGCTGTAATGAAGATTGATTAT 59.818 40.000 0.00 0.00 0.00 1.28
271 272 6.605849 CGGGCTGTAATGAAGATTGATTATG 58.394 40.000 0.00 0.00 0.00 1.90
272 273 6.205464 CGGGCTGTAATGAAGATTGATTATGT 59.795 38.462 0.00 0.00 0.00 2.29
273 274 7.365741 GGGCTGTAATGAAGATTGATTATGTG 58.634 38.462 0.00 0.00 0.00 3.21
274 275 7.365741 GGCTGTAATGAAGATTGATTATGTGG 58.634 38.462 0.00 0.00 0.00 4.17
275 276 7.013655 GGCTGTAATGAAGATTGATTATGTGGT 59.986 37.037 0.00 0.00 0.00 4.16
276 277 8.408601 GCTGTAATGAAGATTGATTATGTGGTT 58.591 33.333 0.00 0.00 0.00 3.67
295 296 9.705290 ATGTGGTTTCATTTTAAGTAATGGAAC 57.295 29.630 12.75 12.75 46.41 3.62
298 299 7.806149 GTTTCATTTTAAGTAATGGAACCGG 57.194 36.000 10.96 0.00 43.55 5.28
299 300 6.518208 TTCATTTTAAGTAATGGAACCGGG 57.482 37.500 6.32 0.00 36.41 5.73
300 301 4.951094 TCATTTTAAGTAATGGAACCGGGG 59.049 41.667 6.32 0.00 36.41 5.73
301 302 2.423446 TTAAGTAATGGAACCGGGGC 57.577 50.000 6.32 0.00 0.00 5.80
302 303 1.287217 TAAGTAATGGAACCGGGGCA 58.713 50.000 6.32 0.00 0.00 5.36
303 304 0.034477 AAGTAATGGAACCGGGGCAG 60.034 55.000 6.32 0.00 0.00 4.85
304 305 1.453197 GTAATGGAACCGGGGCAGG 60.453 63.158 6.32 0.00 37.30 4.85
305 306 1.616930 TAATGGAACCGGGGCAGGA 60.617 57.895 6.32 0.00 34.73 3.86
306 307 1.632018 TAATGGAACCGGGGCAGGAG 61.632 60.000 6.32 0.00 34.73 3.69
317 318 4.328041 GCAGGAGCCCTTTTCCTC 57.672 61.111 0.00 0.00 43.17 3.71
318 319 1.688211 GCAGGAGCCCTTTTCCTCT 59.312 57.895 0.00 0.00 43.17 3.69
319 320 0.912486 GCAGGAGCCCTTTTCCTCTA 59.088 55.000 0.00 0.00 43.17 2.43
320 321 1.282157 GCAGGAGCCCTTTTCCTCTAA 59.718 52.381 0.00 0.00 43.17 2.10
321 322 2.290960 GCAGGAGCCCTTTTCCTCTAAA 60.291 50.000 0.00 0.00 43.17 1.85
322 323 3.814316 GCAGGAGCCCTTTTCCTCTAAAA 60.814 47.826 0.00 0.00 43.17 1.52
323 324 4.407365 CAGGAGCCCTTTTCCTCTAAAAA 58.593 43.478 0.00 0.00 43.17 1.94
401 404 0.603065 TGTGTCATGTCCAGGAGTCG 59.397 55.000 0.00 0.00 0.00 4.18
471 474 2.225255 GGCTGCAGAAGAGAAAACTCAC 59.775 50.000 20.43 0.00 0.00 3.51
508 511 1.738099 CTCCGAGCACAACGAAGGG 60.738 63.158 0.00 0.00 0.00 3.95
509 512 2.154798 CTCCGAGCACAACGAAGGGA 62.155 60.000 0.00 0.00 0.00 4.20
620 634 1.733526 GCGACCAACAACTTTGCCT 59.266 52.632 0.00 0.00 0.00 4.75
622 636 1.021202 CGACCAACAACTTTGCCTCA 58.979 50.000 0.00 0.00 0.00 3.86
720 734 7.020827 TCAAGAAGTCTAAAATGATGGAGGT 57.979 36.000 0.00 0.00 0.00 3.85
722 736 5.665459 AGAAGTCTAAAATGATGGAGGTCG 58.335 41.667 0.00 0.00 0.00 4.79
776 790 2.348472 TCCTTTCCCAGATCAACCACT 58.652 47.619 0.00 0.00 0.00 4.00
809 823 3.300934 CTGCACGGCTGCTACCTCA 62.301 63.158 0.00 0.00 44.57 3.86
829 843 1.879575 AGGTAGAGGTGCCAATGCTA 58.120 50.000 0.00 0.00 38.71 3.49
968 983 1.132199 GTCGTACATGCACTCGTCGG 61.132 60.000 0.00 0.00 0.00 4.79
1001 1016 1.202734 CCTCCATGGCGATGTCAAGAT 60.203 52.381 6.96 0.00 0.00 2.40
1003 1018 1.485895 TCCATGGCGATGTCAAGATGA 59.514 47.619 6.96 0.00 0.00 2.92
1021 1036 1.079503 GACCAACATCTTGCTCGACC 58.920 55.000 0.00 0.00 0.00 4.79
1043 1058 1.192146 AGCCTCACCGCCAAAGTCTA 61.192 55.000 0.00 0.00 0.00 2.59
1091 1106 1.261480 AGTGACGAGGCTGAGATTGT 58.739 50.000 0.00 0.00 0.00 2.71
1102 1117 3.076621 GCTGAGATTGTGACATTGGTGA 58.923 45.455 0.00 0.00 0.00 4.02
1146 1161 1.757118 CCGGAGTACCTCATGACATGT 59.243 52.381 14.98 0.00 31.08 3.21
1232 1248 0.610174 AAGGTGCTCTGCTTCGATGA 59.390 50.000 1.89 0.00 0.00 2.92
1330 1346 1.757118 GTCGGGTGAGATTGGAGATGA 59.243 52.381 0.00 0.00 0.00 2.92
1371 1387 1.060122 GTAACGTACCTTGTGATGCGC 59.940 52.381 0.00 0.00 0.00 6.09
1455 1471 4.141620 GCTCTGAGGAGGTATCAATGGAAA 60.142 45.833 6.83 0.00 39.80 3.13
1633 1664 4.280929 GGGCTGTTGGTTTCTAGATTGTTT 59.719 41.667 0.00 0.00 0.00 2.83
1644 1675 7.381408 GGTTTCTAGATTGTTTTAGTGTTTGGC 59.619 37.037 0.00 0.00 0.00 4.52
1784 1818 9.252962 CAACAGAAGAGAAATGCAACTAAAAAT 57.747 29.630 0.00 0.00 0.00 1.82
1925 1961 3.489059 CGAGTGTTGTTTGAACTTGCCAT 60.489 43.478 0.00 0.00 0.00 4.40
2105 2142 2.742053 GAGCGAGTTCAAGCATTACCAA 59.258 45.455 0.00 0.00 35.48 3.67
2131 2168 2.061578 ACCACATCCGCCCGACATA 61.062 57.895 0.00 0.00 0.00 2.29
2136 2173 1.416401 ACATCCGCCCGACATAGAAAT 59.584 47.619 0.00 0.00 0.00 2.17
2190 2227 7.172190 CACCAATATCAAGTCTATTACAGCCAG 59.828 40.741 0.00 0.00 0.00 4.85
2244 2281 0.395311 ATCAGACCGCCCGAACTAGA 60.395 55.000 0.00 0.00 0.00 2.43
2325 2364 2.180159 AATTACACCACGCCGAGGCT 62.180 55.000 12.70 0.00 39.32 4.58
2388 2427 2.033675 CACACAGTTTCATCAGCTGCAA 59.966 45.455 9.47 0.00 33.87 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.950395 CCCACAATTCCTTCTTCCTCATC 59.050 47.826 0.00 0.00 0.00 2.92
6 7 3.084786 CACCCACAATTCCTTCTTCCTC 58.915 50.000 0.00 0.00 0.00 3.71
9 10 5.728637 ATTTCACCCACAATTCCTTCTTC 57.271 39.130 0.00 0.00 0.00 2.87
10 11 7.797121 AATATTTCACCCACAATTCCTTCTT 57.203 32.000 0.00 0.00 0.00 2.52
11 12 9.136323 GATAATATTTCACCCACAATTCCTTCT 57.864 33.333 0.00 0.00 0.00 2.85
12 13 8.912988 TGATAATATTTCACCCACAATTCCTTC 58.087 33.333 0.00 0.00 0.00 3.46
13 14 8.837099 TGATAATATTTCACCCACAATTCCTT 57.163 30.769 0.00 0.00 0.00 3.36
14 15 8.281531 TCTGATAATATTTCACCCACAATTCCT 58.718 33.333 0.00 0.00 0.00 3.36
15 16 8.463930 TCTGATAATATTTCACCCACAATTCC 57.536 34.615 0.00 0.00 0.00 3.01
16 17 9.956720 CTTCTGATAATATTTCACCCACAATTC 57.043 33.333 0.00 0.00 0.00 2.17
17 18 9.699410 TCTTCTGATAATATTTCACCCACAATT 57.301 29.630 0.00 0.00 0.00 2.32
18 19 9.699410 TTCTTCTGATAATATTTCACCCACAAT 57.301 29.630 0.00 0.00 0.00 2.71
19 20 9.177608 CTTCTTCTGATAATATTTCACCCACAA 57.822 33.333 0.00 0.00 0.00 3.33
20 21 8.548025 TCTTCTTCTGATAATATTTCACCCACA 58.452 33.333 0.00 0.00 0.00 4.17
21 22 8.964476 TCTTCTTCTGATAATATTTCACCCAC 57.036 34.615 0.00 0.00 0.00 4.61
22 23 9.618890 CTTCTTCTTCTGATAATATTTCACCCA 57.381 33.333 0.00 0.00 0.00 4.51
23 24 9.838339 TCTTCTTCTTCTGATAATATTTCACCC 57.162 33.333 0.00 0.00 0.00 4.61
26 27 9.534565 CCGTCTTCTTCTTCTGATAATATTTCA 57.465 33.333 0.00 0.00 0.00 2.69
27 28 9.751542 TCCGTCTTCTTCTTCTGATAATATTTC 57.248 33.333 0.00 0.00 0.00 2.17
29 30 9.757227 CTTCCGTCTTCTTCTTCTGATAATATT 57.243 33.333 0.00 0.00 0.00 1.28
30 31 8.364142 CCTTCCGTCTTCTTCTTCTGATAATAT 58.636 37.037 0.00 0.00 0.00 1.28
31 32 7.560262 TCCTTCCGTCTTCTTCTTCTGATAATA 59.440 37.037 0.00 0.00 0.00 0.98
32 33 6.381420 TCCTTCCGTCTTCTTCTTCTGATAAT 59.619 38.462 0.00 0.00 0.00 1.28
33 34 5.715279 TCCTTCCGTCTTCTTCTTCTGATAA 59.285 40.000 0.00 0.00 0.00 1.75
34 35 5.262009 TCCTTCCGTCTTCTTCTTCTGATA 58.738 41.667 0.00 0.00 0.00 2.15
35 36 4.090090 TCCTTCCGTCTTCTTCTTCTGAT 58.910 43.478 0.00 0.00 0.00 2.90
36 37 3.497332 TCCTTCCGTCTTCTTCTTCTGA 58.503 45.455 0.00 0.00 0.00 3.27
37 38 3.944055 TCCTTCCGTCTTCTTCTTCTG 57.056 47.619 0.00 0.00 0.00 3.02
38 39 3.196685 CCATCCTTCCGTCTTCTTCTTCT 59.803 47.826 0.00 0.00 0.00 2.85
39 40 3.055747 ACCATCCTTCCGTCTTCTTCTTC 60.056 47.826 0.00 0.00 0.00 2.87
40 41 2.907042 ACCATCCTTCCGTCTTCTTCTT 59.093 45.455 0.00 0.00 0.00 2.52
41 42 2.234908 CACCATCCTTCCGTCTTCTTCT 59.765 50.000 0.00 0.00 0.00 2.85
42 43 2.622436 CACCATCCTTCCGTCTTCTTC 58.378 52.381 0.00 0.00 0.00 2.87
43 44 1.339151 GCACCATCCTTCCGTCTTCTT 60.339 52.381 0.00 0.00 0.00 2.52
44 45 0.250513 GCACCATCCTTCCGTCTTCT 59.749 55.000 0.00 0.00 0.00 2.85
45 46 1.084370 CGCACCATCCTTCCGTCTTC 61.084 60.000 0.00 0.00 0.00 2.87
46 47 1.079127 CGCACCATCCTTCCGTCTT 60.079 57.895 0.00 0.00 0.00 3.01
47 48 2.579201 CGCACCATCCTTCCGTCT 59.421 61.111 0.00 0.00 0.00 4.18
48 49 1.952102 TACCGCACCATCCTTCCGTC 61.952 60.000 0.00 0.00 0.00 4.79
49 50 1.335132 ATACCGCACCATCCTTCCGT 61.335 55.000 0.00 0.00 0.00 4.69
50 51 0.179056 AATACCGCACCATCCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
51 52 1.134220 TCAATACCGCACCATCCTTCC 60.134 52.381 0.00 0.00 0.00 3.46
52 53 2.213499 CTCAATACCGCACCATCCTTC 58.787 52.381 0.00 0.00 0.00 3.46
53 54 1.134098 CCTCAATACCGCACCATCCTT 60.134 52.381 0.00 0.00 0.00 3.36
54 55 0.469917 CCTCAATACCGCACCATCCT 59.530 55.000 0.00 0.00 0.00 3.24
55 56 0.535102 CCCTCAATACCGCACCATCC 60.535 60.000 0.00 0.00 0.00 3.51
56 57 0.468226 TCCCTCAATACCGCACCATC 59.532 55.000 0.00 0.00 0.00 3.51
57 58 0.469917 CTCCCTCAATACCGCACCAT 59.530 55.000 0.00 0.00 0.00 3.55
58 59 0.616395 TCTCCCTCAATACCGCACCA 60.616 55.000 0.00 0.00 0.00 4.17
59 60 0.105039 CTCTCCCTCAATACCGCACC 59.895 60.000 0.00 0.00 0.00 5.01
60 61 0.530870 GCTCTCCCTCAATACCGCAC 60.531 60.000 0.00 0.00 0.00 5.34
61 62 0.687757 AGCTCTCCCTCAATACCGCA 60.688 55.000 0.00 0.00 0.00 5.69
62 63 1.000052 GTAGCTCTCCCTCAATACCGC 60.000 57.143 0.00 0.00 0.00 5.68
63 64 2.554893 GAGTAGCTCTCCCTCAATACCG 59.445 54.545 0.00 0.00 37.22 4.02
64 65 3.567397 TGAGTAGCTCTCCCTCAATACC 58.433 50.000 0.00 0.00 42.12 2.73
65 66 4.021544 CCATGAGTAGCTCTCCCTCAATAC 60.022 50.000 8.73 0.00 42.12 1.89
66 67 4.155709 CCATGAGTAGCTCTCCCTCAATA 58.844 47.826 8.73 0.00 42.12 1.90
67 68 2.971330 CCATGAGTAGCTCTCCCTCAAT 59.029 50.000 8.73 0.00 42.12 2.57
68 69 2.392662 CCATGAGTAGCTCTCCCTCAA 58.607 52.381 8.73 0.00 42.12 3.02
69 70 2.031624 GCCATGAGTAGCTCTCCCTCA 61.032 57.143 0.00 0.00 42.12 3.86
70 71 0.678950 GCCATGAGTAGCTCTCCCTC 59.321 60.000 0.00 0.00 42.12 4.30
71 72 0.031716 TGCCATGAGTAGCTCTCCCT 60.032 55.000 0.00 0.00 42.12 4.20
72 73 1.055040 ATGCCATGAGTAGCTCTCCC 58.945 55.000 0.00 0.00 42.12 4.30
73 74 1.690893 TCATGCCATGAGTAGCTCTCC 59.309 52.381 2.53 0.00 42.12 3.71
74 75 3.006644 TCATCATGCCATGAGTAGCTCTC 59.993 47.826 13.60 0.00 43.53 3.20
75 76 2.970640 TCATCATGCCATGAGTAGCTCT 59.029 45.455 13.60 0.00 43.53 4.09
76 77 3.006644 TCTCATCATGCCATGAGTAGCTC 59.993 47.826 18.82 0.00 46.91 4.09
77 78 2.970640 TCTCATCATGCCATGAGTAGCT 59.029 45.455 18.82 0.00 46.91 3.32
78 79 3.397849 TCTCATCATGCCATGAGTAGC 57.602 47.619 18.82 0.00 46.91 3.58
79 80 5.010820 TCTCTTCTCATCATGCCATGAGTAG 59.989 44.000 18.82 18.31 46.91 2.57
80 81 4.897670 TCTCTTCTCATCATGCCATGAGTA 59.102 41.667 18.82 11.77 46.91 2.59
81 82 3.710165 TCTCTTCTCATCATGCCATGAGT 59.290 43.478 18.82 0.00 46.91 3.41
83 84 4.347000 TCATCTCTTCTCATCATGCCATGA 59.653 41.667 10.29 10.29 44.55 3.07
84 85 4.642429 TCATCTCTTCTCATCATGCCATG 58.358 43.478 0.00 0.00 0.00 3.66
85 86 4.976540 TCATCTCTTCTCATCATGCCAT 57.023 40.909 0.00 0.00 0.00 4.40
86 87 4.505039 CCATCATCTCTTCTCATCATGCCA 60.505 45.833 0.00 0.00 0.00 4.92
87 88 4.004314 CCATCATCTCTTCTCATCATGCC 58.996 47.826 0.00 0.00 0.00 4.40
88 89 4.895961 TCCATCATCTCTTCTCATCATGC 58.104 43.478 0.00 0.00 0.00 4.06
89 90 6.347859 TCTCCATCATCTCTTCTCATCATG 57.652 41.667 0.00 0.00 0.00 3.07
90 91 7.310796 GGAATCTCCATCATCTCTTCTCATCAT 60.311 40.741 0.00 0.00 36.28 2.45
91 92 6.014413 GGAATCTCCATCATCTCTTCTCATCA 60.014 42.308 0.00 0.00 36.28 3.07
92 93 6.014413 TGGAATCTCCATCATCTCTTCTCATC 60.014 42.308 0.00 0.00 42.67 2.92
93 94 5.845065 TGGAATCTCCATCATCTCTTCTCAT 59.155 40.000 0.00 0.00 42.67 2.90
94 95 5.214293 TGGAATCTCCATCATCTCTTCTCA 58.786 41.667 0.00 0.00 42.67 3.27
95 96 5.804944 TGGAATCTCCATCATCTCTTCTC 57.195 43.478 0.00 0.00 42.67 2.87
107 108 1.281925 GGGGAGGCTTGGAATCTCCA 61.282 60.000 10.28 0.00 46.61 3.86
108 109 1.534203 GGGGAGGCTTGGAATCTCC 59.466 63.158 0.00 0.00 44.64 3.71
109 110 1.534203 GGGGGAGGCTTGGAATCTC 59.466 63.158 0.00 0.00 0.00 2.75
110 111 2.378634 CGGGGGAGGCTTGGAATCT 61.379 63.158 0.00 0.00 0.00 2.40
111 112 2.193248 CGGGGGAGGCTTGGAATC 59.807 66.667 0.00 0.00 0.00 2.52
112 113 2.286121 TCGGGGGAGGCTTGGAAT 60.286 61.111 0.00 0.00 0.00 3.01
113 114 3.009115 CTCGGGGGAGGCTTGGAA 61.009 66.667 0.00 0.00 0.00 3.53
114 115 3.864983 AACTCGGGGGAGGCTTGGA 62.865 63.158 0.00 0.00 0.00 3.53
115 116 3.330720 AACTCGGGGGAGGCTTGG 61.331 66.667 0.00 0.00 0.00 3.61
116 117 2.045926 CAACTCGGGGGAGGCTTG 60.046 66.667 0.00 0.00 0.00 4.01
117 118 2.529389 ACAACTCGGGGGAGGCTT 60.529 61.111 0.00 0.00 0.00 4.35
118 119 3.322466 CACAACTCGGGGGAGGCT 61.322 66.667 0.00 0.00 0.00 4.58
119 120 4.410400 CCACAACTCGGGGGAGGC 62.410 72.222 0.00 0.00 0.00 4.70
120 121 1.562672 ATTCCACAACTCGGGGGAGG 61.563 60.000 0.00 0.00 0.00 4.30
121 122 0.328258 AATTCCACAACTCGGGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
122 123 1.557832 CTAATTCCACAACTCGGGGGA 59.442 52.381 0.00 0.00 0.00 4.81
123 124 1.280998 ACTAATTCCACAACTCGGGGG 59.719 52.381 0.00 0.00 0.00 5.40
124 125 2.236395 AGACTAATTCCACAACTCGGGG 59.764 50.000 0.00 0.00 0.00 5.73
125 126 3.611766 AGACTAATTCCACAACTCGGG 57.388 47.619 0.00 0.00 0.00 5.14
126 127 7.429636 TTTAAAGACTAATTCCACAACTCGG 57.570 36.000 0.00 0.00 0.00 4.63
127 128 9.543018 GAATTTAAAGACTAATTCCACAACTCG 57.457 33.333 0.00 0.00 35.64 4.18
150 151 8.410141 GCTACTCAATAGTCTACTGACAAGAAT 58.590 37.037 0.00 0.00 45.20 2.40
151 152 7.612244 AGCTACTCAATAGTCTACTGACAAGAA 59.388 37.037 0.00 0.00 45.20 2.52
152 153 7.066404 CAGCTACTCAATAGTCTACTGACAAGA 59.934 40.741 0.00 0.00 45.20 3.02
153 154 7.192913 CAGCTACTCAATAGTCTACTGACAAG 58.807 42.308 0.00 0.00 45.20 3.16
154 155 6.095580 CCAGCTACTCAATAGTCTACTGACAA 59.904 42.308 0.00 0.00 45.20 3.18
155 156 5.590663 CCAGCTACTCAATAGTCTACTGACA 59.409 44.000 0.00 0.00 45.20 3.58
156 157 5.009210 CCCAGCTACTCAATAGTCTACTGAC 59.991 48.000 0.00 0.00 43.22 3.51
157 158 5.104067 TCCCAGCTACTCAATAGTCTACTGA 60.104 44.000 0.00 0.00 37.15 3.41
158 159 5.133941 TCCCAGCTACTCAATAGTCTACTG 58.866 45.833 0.00 0.00 37.15 2.74
159 160 5.103855 ACTCCCAGCTACTCAATAGTCTACT 60.104 44.000 0.00 0.00 37.15 2.57
160 161 5.009210 CACTCCCAGCTACTCAATAGTCTAC 59.991 48.000 0.00 0.00 37.15 2.59
161 162 5.133941 CACTCCCAGCTACTCAATAGTCTA 58.866 45.833 0.00 0.00 37.15 2.59
162 163 3.957497 CACTCCCAGCTACTCAATAGTCT 59.043 47.826 0.00 0.00 37.15 3.24
163 164 3.702045 ACACTCCCAGCTACTCAATAGTC 59.298 47.826 0.00 0.00 37.15 2.59
164 165 3.714144 ACACTCCCAGCTACTCAATAGT 58.286 45.455 0.00 0.00 39.91 2.12
165 166 5.536538 TCATACACTCCCAGCTACTCAATAG 59.463 44.000 0.00 0.00 0.00 1.73
166 167 5.454966 TCATACACTCCCAGCTACTCAATA 58.545 41.667 0.00 0.00 0.00 1.90
167 168 4.290093 TCATACACTCCCAGCTACTCAAT 58.710 43.478 0.00 0.00 0.00 2.57
168 169 3.701542 CTCATACACTCCCAGCTACTCAA 59.298 47.826 0.00 0.00 0.00 3.02
169 170 3.291584 CTCATACACTCCCAGCTACTCA 58.708 50.000 0.00 0.00 0.00 3.41
170 171 2.625790 CCTCATACACTCCCAGCTACTC 59.374 54.545 0.00 0.00 0.00 2.59
171 172 2.023888 ACCTCATACACTCCCAGCTACT 60.024 50.000 0.00 0.00 0.00 2.57
172 173 2.389715 ACCTCATACACTCCCAGCTAC 58.610 52.381 0.00 0.00 0.00 3.58
173 174 2.848678 ACCTCATACACTCCCAGCTA 57.151 50.000 0.00 0.00 0.00 3.32
174 175 1.958288 AACCTCATACACTCCCAGCT 58.042 50.000 0.00 0.00 0.00 4.24
175 176 2.789409 AAACCTCATACACTCCCAGC 57.211 50.000 0.00 0.00 0.00 4.85
176 177 5.070446 TGCTATAAACCTCATACACTCCCAG 59.930 44.000 0.00 0.00 0.00 4.45
177 178 4.966168 TGCTATAAACCTCATACACTCCCA 59.034 41.667 0.00 0.00 0.00 4.37
178 179 5.511545 CCTGCTATAAACCTCATACACTCCC 60.512 48.000 0.00 0.00 0.00 4.30
179 180 5.070580 ACCTGCTATAAACCTCATACACTCC 59.929 44.000 0.00 0.00 0.00 3.85
180 181 6.163135 ACCTGCTATAAACCTCATACACTC 57.837 41.667 0.00 0.00 0.00 3.51
181 182 6.156256 TGAACCTGCTATAAACCTCATACACT 59.844 38.462 0.00 0.00 0.00 3.55
182 183 6.346096 TGAACCTGCTATAAACCTCATACAC 58.654 40.000 0.00 0.00 0.00 2.90
183 184 6.553953 TGAACCTGCTATAAACCTCATACA 57.446 37.500 0.00 0.00 0.00 2.29
184 185 7.217200 TCATGAACCTGCTATAAACCTCATAC 58.783 38.462 0.00 0.00 0.00 2.39
185 186 7.373617 TCATGAACCTGCTATAAACCTCATA 57.626 36.000 0.00 0.00 0.00 2.15
186 187 6.252599 TCATGAACCTGCTATAAACCTCAT 57.747 37.500 0.00 0.00 0.00 2.90
187 188 5.692115 TCATGAACCTGCTATAAACCTCA 57.308 39.130 0.00 0.00 0.00 3.86
188 189 5.471456 CCATCATGAACCTGCTATAAACCTC 59.529 44.000 0.00 0.00 0.00 3.85
189 190 5.132648 TCCATCATGAACCTGCTATAAACCT 59.867 40.000 0.00 0.00 0.00 3.50
190 191 5.376625 TCCATCATGAACCTGCTATAAACC 58.623 41.667 0.00 0.00 0.00 3.27
191 192 7.516198 AATCCATCATGAACCTGCTATAAAC 57.484 36.000 0.00 0.00 0.00 2.01
192 193 8.537728 AAAATCCATCATGAACCTGCTATAAA 57.462 30.769 0.00 0.00 0.00 1.40
193 194 8.537728 AAAAATCCATCATGAACCTGCTATAA 57.462 30.769 0.00 0.00 0.00 0.98
194 195 9.812347 ATAAAAATCCATCATGAACCTGCTATA 57.188 29.630 0.00 0.00 0.00 1.31
195 196 8.582437 CATAAAAATCCATCATGAACCTGCTAT 58.418 33.333 0.00 0.00 0.00 2.97
196 197 7.470424 GCATAAAAATCCATCATGAACCTGCTA 60.470 37.037 0.00 0.00 0.00 3.49
197 198 6.684613 GCATAAAAATCCATCATGAACCTGCT 60.685 38.462 0.00 0.00 0.00 4.24
198 199 5.464389 GCATAAAAATCCATCATGAACCTGC 59.536 40.000 0.00 0.00 0.00 4.85
199 200 5.987347 GGCATAAAAATCCATCATGAACCTG 59.013 40.000 0.00 0.00 0.00 4.00
200 201 5.221303 CGGCATAAAAATCCATCATGAACCT 60.221 40.000 0.00 0.00 0.00 3.50
201 202 4.984161 CGGCATAAAAATCCATCATGAACC 59.016 41.667 0.00 0.00 0.00 3.62
202 203 4.984161 CCGGCATAAAAATCCATCATGAAC 59.016 41.667 0.00 0.00 0.00 3.18
203 204 4.892345 TCCGGCATAAAAATCCATCATGAA 59.108 37.500 0.00 0.00 0.00 2.57
204 205 4.468713 TCCGGCATAAAAATCCATCATGA 58.531 39.130 0.00 0.00 0.00 3.07
205 206 4.520111 TCTCCGGCATAAAAATCCATCATG 59.480 41.667 0.00 0.00 0.00 3.07
206 207 4.728772 TCTCCGGCATAAAAATCCATCAT 58.271 39.130 0.00 0.00 0.00 2.45
207 208 4.136796 CTCTCCGGCATAAAAATCCATCA 58.863 43.478 0.00 0.00 0.00 3.07
208 209 3.057946 GCTCTCCGGCATAAAAATCCATC 60.058 47.826 0.00 0.00 0.00 3.51
209 210 2.887152 GCTCTCCGGCATAAAAATCCAT 59.113 45.455 0.00 0.00 0.00 3.41
210 211 2.297701 GCTCTCCGGCATAAAAATCCA 58.702 47.619 0.00 0.00 0.00 3.41
211 212 1.264288 CGCTCTCCGGCATAAAAATCC 59.736 52.381 0.00 0.00 0.00 3.01
212 213 1.940613 ACGCTCTCCGGCATAAAAATC 59.059 47.619 0.00 0.00 42.52 2.17
213 214 2.038387 ACGCTCTCCGGCATAAAAAT 57.962 45.000 0.00 0.00 42.52 1.82
214 215 1.816074 AACGCTCTCCGGCATAAAAA 58.184 45.000 0.00 0.00 42.52 1.94
215 216 2.676632 TAACGCTCTCCGGCATAAAA 57.323 45.000 0.00 0.00 42.52 1.52
216 217 2.676632 TTAACGCTCTCCGGCATAAA 57.323 45.000 0.00 0.00 42.52 1.40
217 218 2.674357 GTTTTAACGCTCTCCGGCATAA 59.326 45.455 0.00 0.00 42.52 1.90
218 219 2.273557 GTTTTAACGCTCTCCGGCATA 58.726 47.619 0.00 0.00 42.52 3.14
219 220 1.084289 GTTTTAACGCTCTCCGGCAT 58.916 50.000 0.00 0.00 42.52 4.40
220 221 0.952010 GGTTTTAACGCTCTCCGGCA 60.952 55.000 0.00 0.00 42.52 5.69
221 222 0.672711 AGGTTTTAACGCTCTCCGGC 60.673 55.000 0.00 0.00 42.52 6.13
222 223 1.067071 AGAGGTTTTAACGCTCTCCGG 60.067 52.381 0.00 0.00 42.52 5.14
223 224 2.260481 GAGAGGTTTTAACGCTCTCCG 58.740 52.381 19.56 0.00 41.87 4.63
225 226 2.619147 GGGAGAGGTTTTAACGCTCTC 58.381 52.381 20.84 20.84 44.13 3.20
226 227 1.067071 CGGGAGAGGTTTTAACGCTCT 60.067 52.381 11.11 11.11 38.44 4.09
227 228 1.356938 CGGGAGAGGTTTTAACGCTC 58.643 55.000 5.89 5.89 33.17 5.03
228 229 0.672711 GCGGGAGAGGTTTTAACGCT 60.673 55.000 0.00 0.00 41.99 5.07
229 230 1.792301 GCGGGAGAGGTTTTAACGC 59.208 57.895 0.00 0.00 38.70 4.84
230 231 1.356527 CCGCGGGAGAGGTTTTAACG 61.357 60.000 20.10 0.00 45.53 3.18
231 232 2.463592 CCGCGGGAGAGGTTTTAAC 58.536 57.895 20.10 0.00 45.53 2.01
243 244 2.124901 TTCATTACAGCCCGCGGG 60.125 61.111 40.26 40.26 38.57 6.13
244 245 0.532862 ATCTTCATTACAGCCCGCGG 60.533 55.000 21.04 21.04 0.00 6.46
245 246 1.003545 CAATCTTCATTACAGCCCGCG 60.004 52.381 0.00 0.00 0.00 6.46
246 247 2.288666 TCAATCTTCATTACAGCCCGC 58.711 47.619 0.00 0.00 0.00 6.13
247 248 6.205464 ACATAATCAATCTTCATTACAGCCCG 59.795 38.462 0.00 0.00 0.00 6.13
248 249 7.365741 CACATAATCAATCTTCATTACAGCCC 58.634 38.462 0.00 0.00 0.00 5.19
249 250 7.013655 ACCACATAATCAATCTTCATTACAGCC 59.986 37.037 0.00 0.00 0.00 4.85
250 251 7.934457 ACCACATAATCAATCTTCATTACAGC 58.066 34.615 0.00 0.00 0.00 4.40
269 270 9.705290 GTTCCATTACTTAAAATGAAACCACAT 57.295 29.630 2.09 0.00 38.84 3.21
273 274 6.809689 CCGGTTCCATTACTTAAAATGAAACC 59.190 38.462 9.75 9.75 45.66 3.27
274 275 6.809689 CCCGGTTCCATTACTTAAAATGAAAC 59.190 38.462 0.00 0.00 38.84 2.78
275 276 6.071278 CCCCGGTTCCATTACTTAAAATGAAA 60.071 38.462 0.00 0.00 38.84 2.69
276 277 5.419471 CCCCGGTTCCATTACTTAAAATGAA 59.581 40.000 0.00 0.00 38.84 2.57
277 278 4.951094 CCCCGGTTCCATTACTTAAAATGA 59.049 41.667 0.00 0.00 38.84 2.57
278 279 4.440940 GCCCCGGTTCCATTACTTAAAATG 60.441 45.833 0.00 0.00 36.74 2.32
279 280 3.702548 GCCCCGGTTCCATTACTTAAAAT 59.297 43.478 0.00 0.00 0.00 1.82
280 281 3.090790 GCCCCGGTTCCATTACTTAAAA 58.909 45.455 0.00 0.00 0.00 1.52
281 282 2.041350 TGCCCCGGTTCCATTACTTAAA 59.959 45.455 0.00 0.00 0.00 1.52
282 283 1.634459 TGCCCCGGTTCCATTACTTAA 59.366 47.619 0.00 0.00 0.00 1.85
283 284 1.210967 CTGCCCCGGTTCCATTACTTA 59.789 52.381 0.00 0.00 0.00 2.24
284 285 0.034477 CTGCCCCGGTTCCATTACTT 60.034 55.000 0.00 0.00 0.00 2.24
285 286 1.607612 CTGCCCCGGTTCCATTACT 59.392 57.895 0.00 0.00 0.00 2.24
286 287 1.453197 CCTGCCCCGGTTCCATTAC 60.453 63.158 0.00 0.00 0.00 1.89
287 288 1.616930 TCCTGCCCCGGTTCCATTA 60.617 57.895 0.00 0.00 0.00 1.90
288 289 2.938798 TCCTGCCCCGGTTCCATT 60.939 61.111 0.00 0.00 0.00 3.16
289 290 3.411517 CTCCTGCCCCGGTTCCAT 61.412 66.667 0.00 0.00 0.00 3.41
299 300 6.882412 TTTTAGAGGAAAAGGGCTCCTGCC 62.882 50.000 0.00 0.00 43.65 4.85
300 301 0.912486 TAGAGGAAAAGGGCTCCTGC 59.088 55.000 0.00 0.00 43.65 4.85
301 302 3.721087 TTTAGAGGAAAAGGGCTCCTG 57.279 47.619 0.00 0.00 43.65 3.86
302 303 4.741928 TTTTTAGAGGAAAAGGGCTCCT 57.258 40.909 0.00 0.00 46.40 3.69
401 404 2.983592 CAAGAACACCCCCACGCC 60.984 66.667 0.00 0.00 0.00 5.68
471 474 4.092343 AGCTCTGCTTTGCCTTGG 57.908 55.556 0.00 0.00 33.89 3.61
492 495 1.079127 ATCCCTTCGTTGTGCTCGG 60.079 57.895 0.00 0.00 0.00 4.63
508 511 4.553668 TGCTGCTGCAGGATGATC 57.446 55.556 29.05 12.98 45.31 2.92
590 604 0.108585 TTGGTCGCCTTCTTGAGCTT 59.891 50.000 0.00 0.00 33.88 3.74
650 664 5.542779 GAGAACACCTCTGTAGACAATGTT 58.457 41.667 0.00 0.00 38.86 2.71
651 665 4.321304 CGAGAACACCTCTGTAGACAATGT 60.321 45.833 0.00 0.00 39.78 2.71
720 734 1.335964 CGAACTCCTTTGTCTCTGCGA 60.336 52.381 0.00 0.00 0.00 5.10
722 736 0.793250 GCGAACTCCTTTGTCTCTGC 59.207 55.000 0.00 0.00 0.00 4.26
776 790 0.250252 TGCAGCTTGACGACATTCCA 60.250 50.000 0.00 0.00 0.00 3.53
809 823 0.995024 AGCATTGGCACCTCTACCTT 59.005 50.000 0.00 0.00 44.61 3.50
814 828 1.577736 AGACTAGCATTGGCACCTCT 58.422 50.000 0.00 0.00 44.61 3.69
829 843 3.622163 CGTTGGAGACGTACTCATAGACT 59.378 47.826 14.26 0.00 46.49 3.24
852 866 4.317530 TGGATGTAGTGGTAGAGAGTGT 57.682 45.455 0.00 0.00 0.00 3.55
888 902 0.663153 GAGTGCCTTGTTGGTGTCAC 59.337 55.000 0.00 0.00 38.35 3.67
889 903 0.813610 CGAGTGCCTTGTTGGTGTCA 60.814 55.000 0.00 0.00 38.35 3.58
919 933 4.618513 GACTCCGTCGCTATCTGC 57.381 61.111 0.00 0.00 38.57 4.26
938 952 4.112341 GTACGACAGCGCCTCGGT 62.112 66.667 24.17 12.33 42.48 4.69
968 983 4.593864 GGAGGATCGGTGGCGAGC 62.594 72.222 0.00 0.00 34.37 5.03
1043 1058 1.904771 TTCGATGCCCCGAAGTCAT 59.095 52.632 6.23 0.00 42.74 3.06
1146 1161 0.315251 CACTCTTGTCCGTCAGCTGA 59.685 55.000 13.74 13.74 0.00 4.26
1232 1248 1.001503 CTCCTGTCCTCCTCTGGCT 59.998 63.158 0.00 0.00 0.00 4.75
1371 1387 3.449632 CTCTCTGATCATGCTCACACAG 58.550 50.000 0.00 0.00 0.00 3.66
1389 1405 2.037053 CATCGACGGATGCTCCTCT 58.963 57.895 0.00 0.00 43.26 3.69
1470 1486 0.249784 CCTCATCCGGATCAGCACTG 60.250 60.000 15.88 2.80 0.00 3.66
1471 1487 1.406065 CCCTCATCCGGATCAGCACT 61.406 60.000 15.88 0.00 0.00 4.40
1633 1664 0.035739 GGAGTCCCGCCAAACACTAA 59.964 55.000 0.00 0.00 0.00 2.24
1644 1675 4.076394 TGTGGATTTAAAAAGGAGTCCCG 58.924 43.478 5.25 0.00 37.58 5.14
1733 1766 8.567948 TGTTGAACATCCTCTTCAATTCTAAAC 58.432 33.333 0.00 0.00 39.28 2.01
1741 1774 5.436175 TCTGTTGTTGAACATCCTCTTCAA 58.564 37.500 0.00 0.00 41.33 2.69
1784 1818 8.402798 TGGTATTTGCTTGAAACATTTCTCTA 57.597 30.769 5.97 0.00 38.02 2.43
1909 1945 5.021033 ACATTCATGGCAAGTTCAAACAA 57.979 34.783 0.00 0.00 0.00 2.83
2105 2142 1.303317 GCGGATGTGGTGGGTTTCT 60.303 57.895 0.00 0.00 0.00 2.52
2131 2168 3.545003 CCCCATGGCATCCATTTCT 57.455 52.632 6.09 0.00 42.23 2.52
2190 2227 1.673920 TGTTCTGGTCGTTCTTTTGGC 59.326 47.619 0.00 0.00 0.00 4.52
2263 2300 1.959985 CCATCCTCTCGTGCTATCTGT 59.040 52.381 0.00 0.00 0.00 3.41
2269 2306 1.110442 CTTCTCCATCCTCTCGTGCT 58.890 55.000 0.00 0.00 0.00 4.40
2298 2335 1.130561 GCGTGGTGTAATTCTGAAGCC 59.869 52.381 0.00 0.00 0.00 4.35
2325 2364 2.880268 CAGACATGAAGACCAAGTTGCA 59.120 45.455 0.00 0.00 0.00 4.08
2388 2427 1.487976 AGATGATCAGGAACGGCATGT 59.512 47.619 0.09 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.