Multiple sequence alignment - TraesCS6B01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G414000 chr6B 100.000 4687 0 0 1 4687 687181657 687176971 0.000000e+00 8656.0
1 TraesCS6B01G414000 chr6B 87.533 1869 178 37 2160 4015 687255614 687257440 0.000000e+00 2109.0
2 TraesCS6B01G414000 chr6B 83.043 861 120 17 1203 2043 687873703 687874557 0.000000e+00 758.0
3 TraesCS6B01G414000 chr6B 84.903 616 84 7 1393 2002 688126199 688125587 8.620000e-172 614.0
4 TraesCS6B01G414000 chr6B 79.432 880 142 31 1191 2043 687954905 687955772 1.880000e-163 586.0
5 TraesCS6B01G414000 chr6B 82.946 645 92 11 1216 1847 688080566 688079927 2.450000e-157 566.0
6 TraesCS6B01G414000 chr6B 80.837 741 110 19 1213 1936 687959351 687960076 1.910000e-153 553.0
7 TraesCS6B01G414000 chr6B 91.718 326 27 0 1718 2043 687255239 687255564 1.990000e-123 453.0
8 TraesCS6B01G414000 chr6B 86.957 184 24 0 2177 2360 688033737 688033554 1.710000e-49 207.0
9 TraesCS6B01G414000 chr6B 89.147 129 12 2 1216 1343 688127642 688127515 4.850000e-35 159.0
10 TraesCS6B01G414000 chr6B 93.939 66 4 0 1265 1330 688033849 688033784 2.980000e-17 100.0
11 TraesCS6B01G414000 chr6D 93.255 1957 112 13 2161 4098 452484880 452482925 0.000000e+00 2865.0
12 TraesCS6B01G414000 chr6D 92.924 1173 55 13 877 2043 452486130 452484980 0.000000e+00 1681.0
13 TraesCS6B01G414000 chr6D 78.567 1535 294 23 2177 3688 452907228 452908750 0.000000e+00 979.0
14 TraesCS6B01G414000 chr6D 78.295 1548 287 31 2177 3701 452931443 452929922 0.000000e+00 952.0
15 TraesCS6B01G414000 chr6D 80.067 893 139 32 1151 2022 452906257 452907131 1.110000e-175 627.0
16 TraesCS6B01G414000 chr6D 84.249 546 81 4 1504 2045 452848802 452849346 1.160000e-145 527.0
17 TraesCS6B01G414000 chr6D 85.965 399 51 4 1651 2045 452931905 452931508 5.610000e-114 422.0
18 TraesCS6B01G414000 chr6D 87.069 348 37 6 275 616 452486863 452486518 2.050000e-103 387.0
19 TraesCS6B01G414000 chr6D 81.416 339 40 9 3069 3406 452477910 452477594 6.020000e-64 255.0
20 TraesCS6B01G414000 chr6D 84.545 220 32 2 2161 2379 452841072 452841290 2.840000e-52 217.0
21 TraesCS6B01G414000 chr6D 81.046 153 12 7 649 785 452486517 452486366 6.410000e-19 106.0
22 TraesCS6B01G414000 chr6D 90.323 62 4 2 4092 4152 452482896 452482836 3.890000e-11 80.5
23 TraesCS6B01G414000 chr6A 91.376 1948 155 11 2161 4098 598156370 598154426 0.000000e+00 2654.0
24 TraesCS6B01G414000 chr6A 93.643 1164 59 7 881 2043 598157974 598156825 0.000000e+00 1725.0
25 TraesCS6B01G414000 chr6A 77.471 1558 291 42 2161 3687 598925846 598924318 0.000000e+00 878.0
26 TraesCS6B01G414000 chr6A 84.211 836 118 12 1205 2029 598926722 598925890 0.000000e+00 800.0
27 TraesCS6B01G414000 chr6A 81.387 548 82 13 1504 2045 598810408 598810941 3.350000e-116 429.0
28 TraesCS6B01G414000 chr6A 80.213 470 58 8 344 795 598163541 598163089 2.100000e-83 320.0
29 TraesCS6B01G414000 chr6A 80.952 336 41 15 3349 3678 598078926 598078608 1.300000e-60 244.0
30 TraesCS6B01G414000 chr6A 85.455 220 30 2 2161 2379 598790621 598790839 1.310000e-55 228.0
31 TraesCS6B01G414000 chr5D 92.043 553 20 3 4158 4687 436803381 436803932 0.000000e+00 756.0
32 TraesCS6B01G414000 chr7D 90.778 553 26 4 4158 4687 589603316 589603866 0.000000e+00 715.0
33 TraesCS6B01G414000 chr7A 93.388 242 7 1 4446 4687 63859817 63860049 2.680000e-92 350.0
34 TraesCS6B01G414000 chr7A 87.025 316 16 2 4158 4450 63799861 63800174 2.700000e-87 333.0
35 TraesCS6B01G414000 chr7A 97.059 34 1 0 1265 1298 6297627 6297660 1.820000e-04 58.4
36 TraesCS6B01G414000 chr4B 82.121 330 34 15 4158 4462 564789360 564789689 4.650000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G414000 chr6B 687176971 687181657 4686 True 8656.0 8656 100.0000 1 4687 1 chr6B.!!$R1 4686
1 TraesCS6B01G414000 chr6B 687255239 687257440 2201 False 1281.0 2109 89.6255 1718 4015 2 chr6B.!!$F2 2297
2 TraesCS6B01G414000 chr6B 687873703 687874557 854 False 758.0 758 83.0430 1203 2043 1 chr6B.!!$F1 840
3 TraesCS6B01G414000 chr6B 687954905 687960076 5171 False 569.5 586 80.1345 1191 2043 2 chr6B.!!$F3 852
4 TraesCS6B01G414000 chr6B 688079927 688080566 639 True 566.0 566 82.9460 1216 1847 1 chr6B.!!$R2 631
5 TraesCS6B01G414000 chr6B 688125587 688127642 2055 True 386.5 614 87.0250 1216 2002 2 chr6B.!!$R4 786
6 TraesCS6B01G414000 chr6D 452482836 452486863 4027 True 1023.9 2865 88.9234 275 4152 5 chr6D.!!$R2 3877
7 TraesCS6B01G414000 chr6D 452906257 452908750 2493 False 803.0 979 79.3170 1151 3688 2 chr6D.!!$F3 2537
8 TraesCS6B01G414000 chr6D 452929922 452931905 1983 True 687.0 952 82.1300 1651 3701 2 chr6D.!!$R3 2050
9 TraesCS6B01G414000 chr6D 452848802 452849346 544 False 527.0 527 84.2490 1504 2045 1 chr6D.!!$F2 541
10 TraesCS6B01G414000 chr6A 598154426 598157974 3548 True 2189.5 2654 92.5095 881 4098 2 chr6A.!!$R3 3217
11 TraesCS6B01G414000 chr6A 598924318 598926722 2404 True 839.0 878 80.8410 1205 3687 2 chr6A.!!$R4 2482
12 TraesCS6B01G414000 chr6A 598810408 598810941 533 False 429.0 429 81.3870 1504 2045 1 chr6A.!!$F2 541
13 TraesCS6B01G414000 chr5D 436803381 436803932 551 False 756.0 756 92.0430 4158 4687 1 chr5D.!!$F1 529
14 TraesCS6B01G414000 chr7D 589603316 589603866 550 False 715.0 715 90.7780 4158 4687 1 chr7D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 638 0.032130 CAGCCACTGACTACACGTGT 59.968 55.0 26.52 26.52 32.44 4.49 F
1082 1248 0.190069 ACTCCACCAGTCCACCTACA 59.810 55.0 0.00 0.00 0.00 2.74 F
2016 3492 0.179092 GCTACGACGGCAACCCTTAT 60.179 55.0 0.00 0.00 0.00 1.73 F
2906 4845 0.323302 TCGGTTGCTGCCTTGACATA 59.677 50.0 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 3084 1.148273 GGGCATGGCATACCTCGAA 59.852 57.895 22.06 0.0 36.63 3.71 R
2904 4843 1.050988 ACCAGCATCGGCACCTCTAT 61.051 55.000 0.00 0.0 44.61 1.98 R
3565 5511 0.471617 CTGCCCTTCCTCCGAATCAT 59.528 55.000 0.00 0.0 0.00 2.45 R
4000 5978 0.965866 CAGAGGCCGTCTGTCTACCA 60.966 60.000 18.74 0.0 46.89 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.416490 AAACCACACGACGGCAAG 58.584 55.556 0.00 0.00 0.00 4.01
18 19 2.184167 AAACCACACGACGGCAAGG 61.184 57.895 0.00 0.00 0.00 3.61
19 20 2.879813 AAACCACACGACGGCAAGGT 62.880 55.000 0.00 0.00 0.00 3.50
20 21 2.590575 CCACACGACGGCAAGGTT 60.591 61.111 0.00 0.00 0.00 3.50
21 22 2.631428 CACACGACGGCAAGGTTG 59.369 61.111 0.00 0.00 0.00 3.77
22 23 1.885388 CACACGACGGCAAGGTTGA 60.885 57.895 0.00 0.00 0.00 3.18
23 24 1.070786 ACACGACGGCAAGGTTGAT 59.929 52.632 0.00 0.00 0.00 2.57
24 25 0.534203 ACACGACGGCAAGGTTGATT 60.534 50.000 0.00 0.00 0.00 2.57
25 26 1.270412 ACACGACGGCAAGGTTGATTA 60.270 47.619 0.00 0.00 0.00 1.75
26 27 1.393539 CACGACGGCAAGGTTGATTAG 59.606 52.381 0.00 0.00 0.00 1.73
27 28 1.274167 ACGACGGCAAGGTTGATTAGA 59.726 47.619 0.00 0.00 0.00 2.10
28 29 1.927174 CGACGGCAAGGTTGATTAGAG 59.073 52.381 0.00 0.00 0.00 2.43
29 30 2.280628 GACGGCAAGGTTGATTAGAGG 58.719 52.381 0.00 0.00 0.00 3.69
30 31 1.906574 ACGGCAAGGTTGATTAGAGGA 59.093 47.619 0.00 0.00 0.00 3.71
31 32 2.280628 CGGCAAGGTTGATTAGAGGAC 58.719 52.381 0.00 0.00 0.00 3.85
32 33 2.354704 CGGCAAGGTTGATTAGAGGACA 60.355 50.000 0.00 0.00 0.00 4.02
33 34 3.686016 GGCAAGGTTGATTAGAGGACAA 58.314 45.455 0.00 0.00 0.00 3.18
34 35 3.440522 GGCAAGGTTGATTAGAGGACAAC 59.559 47.826 0.00 0.00 41.79 3.32
39 40 4.622701 GTTGATTAGAGGACAACCATGC 57.377 45.455 0.00 0.00 38.20 4.06
40 41 3.998913 TGATTAGAGGACAACCATGCA 57.001 42.857 0.00 0.00 38.94 3.96
41 42 4.299586 TGATTAGAGGACAACCATGCAA 57.700 40.909 0.00 0.00 38.94 4.08
42 43 4.661222 TGATTAGAGGACAACCATGCAAA 58.339 39.130 0.00 0.00 38.94 3.68
43 44 5.076182 TGATTAGAGGACAACCATGCAAAA 58.924 37.500 0.00 0.00 38.94 2.44
44 45 5.538053 TGATTAGAGGACAACCATGCAAAAA 59.462 36.000 0.00 0.00 38.94 1.94
45 46 3.733443 AGAGGACAACCATGCAAAAAC 57.267 42.857 0.00 0.00 38.94 2.43
46 47 3.030291 AGAGGACAACCATGCAAAAACA 58.970 40.909 0.00 0.00 38.94 2.83
47 48 3.450457 AGAGGACAACCATGCAAAAACAA 59.550 39.130 0.00 0.00 38.94 2.83
48 49 3.530535 AGGACAACCATGCAAAAACAAC 58.469 40.909 0.00 0.00 38.94 3.32
49 50 3.055530 AGGACAACCATGCAAAAACAACA 60.056 39.130 0.00 0.00 38.94 3.33
50 51 3.686726 GGACAACCATGCAAAAACAACAA 59.313 39.130 0.00 0.00 35.97 2.83
51 52 4.335037 GGACAACCATGCAAAAACAACAAT 59.665 37.500 0.00 0.00 35.97 2.71
52 53 5.525378 GGACAACCATGCAAAAACAACAATA 59.475 36.000 0.00 0.00 35.97 1.90
53 54 6.037610 GGACAACCATGCAAAAACAACAATAA 59.962 34.615 0.00 0.00 35.97 1.40
54 55 7.255070 GGACAACCATGCAAAAACAACAATAAT 60.255 33.333 0.00 0.00 35.97 1.28
55 56 7.416022 ACAACCATGCAAAAACAACAATAATG 58.584 30.769 0.00 0.00 0.00 1.90
56 57 7.281774 ACAACCATGCAAAAACAACAATAATGA 59.718 29.630 0.00 0.00 0.00 2.57
57 58 7.188468 ACCATGCAAAAACAACAATAATGAC 57.812 32.000 0.00 0.00 0.00 3.06
58 59 6.073873 ACCATGCAAAAACAACAATAATGACG 60.074 34.615 0.00 0.00 0.00 4.35
59 60 6.145209 CCATGCAAAAACAACAATAATGACGA 59.855 34.615 0.00 0.00 0.00 4.20
60 61 7.307042 CCATGCAAAAACAACAATAATGACGAA 60.307 33.333 0.00 0.00 0.00 3.85
61 62 7.706281 TGCAAAAACAACAATAATGACGAAT 57.294 28.000 0.00 0.00 0.00 3.34
62 63 8.803201 TGCAAAAACAACAATAATGACGAATA 57.197 26.923 0.00 0.00 0.00 1.75
63 64 8.695284 TGCAAAAACAACAATAATGACGAATAC 58.305 29.630 0.00 0.00 0.00 1.89
64 65 8.695284 GCAAAAACAACAATAATGACGAATACA 58.305 29.630 0.00 0.00 0.00 2.29
67 68 8.447787 AAACAACAATAATGACGAATACAAGC 57.552 30.769 0.00 0.00 0.00 4.01
68 69 7.139896 ACAACAATAATGACGAATACAAGCA 57.860 32.000 0.00 0.00 0.00 3.91
69 70 7.243487 ACAACAATAATGACGAATACAAGCAG 58.757 34.615 0.00 0.00 0.00 4.24
70 71 5.810525 ACAATAATGACGAATACAAGCAGC 58.189 37.500 0.00 0.00 0.00 5.25
71 72 5.353956 ACAATAATGACGAATACAAGCAGCA 59.646 36.000 0.00 0.00 0.00 4.41
72 73 6.038603 ACAATAATGACGAATACAAGCAGCAT 59.961 34.615 0.00 0.00 0.00 3.79
73 74 4.542662 AATGACGAATACAAGCAGCATC 57.457 40.909 0.00 0.00 0.00 3.91
74 75 3.251479 TGACGAATACAAGCAGCATCT 57.749 42.857 0.00 0.00 0.00 2.90
75 76 4.385358 TGACGAATACAAGCAGCATCTA 57.615 40.909 0.00 0.00 0.00 1.98
76 77 4.948847 TGACGAATACAAGCAGCATCTAT 58.051 39.130 0.00 0.00 0.00 1.98
77 78 6.084326 TGACGAATACAAGCAGCATCTATA 57.916 37.500 0.00 0.00 0.00 1.31
78 79 5.920840 TGACGAATACAAGCAGCATCTATAC 59.079 40.000 0.00 0.00 0.00 1.47
79 80 5.842907 ACGAATACAAGCAGCATCTATACA 58.157 37.500 0.00 0.00 0.00 2.29
80 81 6.280643 ACGAATACAAGCAGCATCTATACAA 58.719 36.000 0.00 0.00 0.00 2.41
81 82 6.761242 ACGAATACAAGCAGCATCTATACAAA 59.239 34.615 0.00 0.00 0.00 2.83
82 83 7.042456 ACGAATACAAGCAGCATCTATACAAAG 60.042 37.037 0.00 0.00 0.00 2.77
83 84 4.889832 ACAAGCAGCATCTATACAAAGC 57.110 40.909 0.00 0.00 0.00 3.51
84 85 4.264253 ACAAGCAGCATCTATACAAAGCA 58.736 39.130 0.00 0.00 0.00 3.91
85 86 4.334759 ACAAGCAGCATCTATACAAAGCAG 59.665 41.667 0.00 0.00 0.00 4.24
86 87 3.474600 AGCAGCATCTATACAAAGCAGG 58.525 45.455 0.00 0.00 0.00 4.85
87 88 3.135348 AGCAGCATCTATACAAAGCAGGA 59.865 43.478 0.00 0.00 0.00 3.86
88 89 3.249559 GCAGCATCTATACAAAGCAGGAC 59.750 47.826 0.00 0.00 0.00 3.85
89 90 4.701765 CAGCATCTATACAAAGCAGGACT 58.298 43.478 0.00 0.00 0.00 3.85
90 91 4.749099 CAGCATCTATACAAAGCAGGACTC 59.251 45.833 0.00 0.00 0.00 3.36
91 92 4.061596 GCATCTATACAAAGCAGGACTCC 58.938 47.826 0.00 0.00 0.00 3.85
92 93 4.443457 GCATCTATACAAAGCAGGACTCCA 60.443 45.833 0.00 0.00 0.00 3.86
93 94 4.737855 TCTATACAAAGCAGGACTCCAC 57.262 45.455 0.00 0.00 0.00 4.02
94 95 4.093743 TCTATACAAAGCAGGACTCCACA 58.906 43.478 0.00 0.00 0.00 4.17
95 96 3.788227 ATACAAAGCAGGACTCCACAA 57.212 42.857 0.00 0.00 0.00 3.33
96 97 1.680338 ACAAAGCAGGACTCCACAAC 58.320 50.000 0.00 0.00 0.00 3.32
97 98 0.954452 CAAAGCAGGACTCCACAACC 59.046 55.000 0.00 0.00 0.00 3.77
98 99 0.550914 AAAGCAGGACTCCACAACCA 59.449 50.000 0.00 0.00 0.00 3.67
99 100 0.550914 AAGCAGGACTCCACAACCAA 59.449 50.000 0.00 0.00 0.00 3.67
100 101 0.179018 AGCAGGACTCCACAACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
101 102 1.507141 GCAGGACTCCACAACCAACG 61.507 60.000 0.00 0.00 0.00 4.10
102 103 0.105964 CAGGACTCCACAACCAACGA 59.894 55.000 0.00 0.00 0.00 3.85
103 104 0.106149 AGGACTCCACAACCAACGAC 59.894 55.000 0.00 0.00 0.00 4.34
104 105 0.106149 GGACTCCACAACCAACGACT 59.894 55.000 0.00 0.00 0.00 4.18
105 106 1.217882 GACTCCACAACCAACGACTG 58.782 55.000 0.00 0.00 0.00 3.51
106 107 0.828022 ACTCCACAACCAACGACTGA 59.172 50.000 0.00 0.00 0.00 3.41
107 108 1.202533 ACTCCACAACCAACGACTGAG 60.203 52.381 0.00 0.00 0.00 3.35
108 109 0.105964 TCCACAACCAACGACTGAGG 59.894 55.000 0.00 0.00 0.00 3.86
109 110 0.884704 CCACAACCAACGACTGAGGG 60.885 60.000 0.00 0.00 0.00 4.30
110 111 1.227853 ACAACCAACGACTGAGGGC 60.228 57.895 0.00 0.00 0.00 5.19
111 112 1.966451 CAACCAACGACTGAGGGCC 60.966 63.158 0.00 0.00 0.00 5.80
112 113 2.448582 AACCAACGACTGAGGGCCA 61.449 57.895 6.18 0.00 0.00 5.36
113 114 1.990160 AACCAACGACTGAGGGCCAA 61.990 55.000 6.18 0.00 0.00 4.52
114 115 1.228124 CCAACGACTGAGGGCCAAA 60.228 57.895 6.18 0.00 0.00 3.28
115 116 1.237285 CCAACGACTGAGGGCCAAAG 61.237 60.000 6.18 4.93 0.00 2.77
116 117 1.073199 AACGACTGAGGGCCAAAGG 59.927 57.895 6.18 0.00 0.00 3.11
117 118 2.045926 CGACTGAGGGCCAAAGGG 60.046 66.667 6.18 0.00 37.18 3.95
118 119 2.592993 CGACTGAGGGCCAAAGGGA 61.593 63.158 6.18 0.00 35.59 4.20
119 120 1.002011 GACTGAGGGCCAAAGGGAC 60.002 63.158 6.18 0.00 43.93 4.46
126 127 3.739613 GCCAAAGGGACCCGGGAT 61.740 66.667 32.02 12.15 35.59 3.85
127 128 2.380285 GCCAAAGGGACCCGGGATA 61.380 63.158 32.02 0.00 35.59 2.59
128 129 1.530283 CCAAAGGGACCCGGGATAC 59.470 63.158 32.02 17.69 35.59 2.24
129 130 1.145377 CAAAGGGACCCGGGATACG 59.855 63.158 32.02 0.00 43.80 3.06
139 140 3.274393 CGGGATACGGCAGAAGAAG 57.726 57.895 0.00 0.00 39.42 2.85
140 141 0.460311 CGGGATACGGCAGAAGAAGT 59.540 55.000 0.00 0.00 39.42 3.01
141 142 1.134788 CGGGATACGGCAGAAGAAGTT 60.135 52.381 0.00 0.00 39.42 2.66
142 143 2.280628 GGGATACGGCAGAAGAAGTTG 58.719 52.381 0.00 0.00 37.60 3.16
143 144 2.354805 GGGATACGGCAGAAGAAGTTGT 60.355 50.000 0.00 0.00 37.60 3.32
144 145 2.673368 GGATACGGCAGAAGAAGTTGTG 59.327 50.000 0.00 0.00 0.00 3.33
148 149 3.736581 GCAGAAGAAGTTGTGCGAC 57.263 52.632 0.00 0.00 42.49 5.19
149 150 0.937304 GCAGAAGAAGTTGTGCGACA 59.063 50.000 0.00 0.00 42.49 4.35
150 151 1.330521 GCAGAAGAAGTTGTGCGACAA 59.669 47.619 0.00 0.00 42.49 3.18
162 163 3.230540 CGACAACGCTTGCGAGAA 58.769 55.556 22.03 0.00 33.95 2.87
163 164 1.128611 CGACAACGCTTGCGAGAAG 59.871 57.895 22.03 9.96 33.95 2.85
164 165 1.548973 CGACAACGCTTGCGAGAAGT 61.549 55.000 22.03 12.83 33.95 3.01
165 166 1.415374 GACAACGCTTGCGAGAAGTA 58.585 50.000 22.03 0.00 0.00 2.24
166 167 1.790623 GACAACGCTTGCGAGAAGTAA 59.209 47.619 22.03 0.00 0.00 2.24
167 168 2.206750 ACAACGCTTGCGAGAAGTAAA 58.793 42.857 22.03 0.00 0.00 2.01
168 169 2.806244 ACAACGCTTGCGAGAAGTAAAT 59.194 40.909 22.03 0.00 0.00 1.40
169 170 3.155998 CAACGCTTGCGAGAAGTAAATG 58.844 45.455 22.03 0.00 0.00 2.32
170 171 2.683968 ACGCTTGCGAGAAGTAAATGA 58.316 42.857 22.03 0.00 0.00 2.57
171 172 2.412089 ACGCTTGCGAGAAGTAAATGAC 59.588 45.455 22.03 0.00 0.00 3.06
172 173 2.411748 CGCTTGCGAGAAGTAAATGACA 59.588 45.455 9.60 0.00 0.00 3.58
173 174 3.722082 CGCTTGCGAGAAGTAAATGACAC 60.722 47.826 9.60 0.00 0.00 3.67
174 175 3.424962 GCTTGCGAGAAGTAAATGACACC 60.425 47.826 4.70 0.00 0.00 4.16
175 176 2.695359 TGCGAGAAGTAAATGACACCC 58.305 47.619 0.00 0.00 0.00 4.61
176 177 2.301870 TGCGAGAAGTAAATGACACCCT 59.698 45.455 0.00 0.00 0.00 4.34
177 178 2.930682 GCGAGAAGTAAATGACACCCTC 59.069 50.000 0.00 0.00 0.00 4.30
178 179 3.179830 CGAGAAGTAAATGACACCCTCG 58.820 50.000 0.00 0.00 37.26 4.63
179 180 3.522553 GAGAAGTAAATGACACCCTCGG 58.477 50.000 0.00 0.00 0.00 4.63
180 181 2.236395 AGAAGTAAATGACACCCTCGGG 59.764 50.000 0.00 0.00 42.03 5.14
190 191 2.438434 CCCTCGGGTGCCAACATC 60.438 66.667 0.00 0.00 0.00 3.06
191 192 2.350895 CCTCGGGTGCCAACATCA 59.649 61.111 0.00 0.00 0.00 3.07
192 193 2.040544 CCTCGGGTGCCAACATCAC 61.041 63.158 0.00 0.00 0.00 3.06
193 194 1.003355 CTCGGGTGCCAACATCACT 60.003 57.895 0.00 0.00 34.97 3.41
194 195 1.300971 CTCGGGTGCCAACATCACTG 61.301 60.000 0.00 0.00 34.97 3.66
195 196 2.334946 CGGGTGCCAACATCACTGG 61.335 63.158 0.00 0.00 36.99 4.00
200 201 3.266964 CCAACATCACTGGCACCG 58.733 61.111 0.00 0.00 0.00 4.94
201 202 1.302431 CCAACATCACTGGCACCGA 60.302 57.895 0.00 0.00 0.00 4.69
202 203 0.677731 CCAACATCACTGGCACCGAT 60.678 55.000 0.00 0.00 0.00 4.18
203 204 0.729116 CAACATCACTGGCACCGATC 59.271 55.000 0.00 0.00 0.00 3.69
204 205 0.392998 AACATCACTGGCACCGATCC 60.393 55.000 0.00 0.00 0.00 3.36
205 206 1.524621 CATCACTGGCACCGATCCC 60.525 63.158 0.00 0.00 0.00 3.85
206 207 2.746375 ATCACTGGCACCGATCCCC 61.746 63.158 0.00 0.00 0.00 4.81
207 208 4.838152 CACTGGCACCGATCCCCG 62.838 72.222 0.00 0.00 38.18 5.73
209 210 4.530857 CTGGCACCGATCCCCGTC 62.531 72.222 0.00 0.00 36.31 4.79
216 217 2.574929 CGATCCCCGTCGGAACAA 59.425 61.111 14.39 0.00 46.47 2.83
217 218 1.079681 CGATCCCCGTCGGAACAAA 60.080 57.895 14.39 0.00 46.47 2.83
218 219 1.082117 CGATCCCCGTCGGAACAAAG 61.082 60.000 14.39 0.00 46.47 2.77
219 220 1.366854 GATCCCCGTCGGAACAAAGC 61.367 60.000 14.39 0.00 46.47 3.51
220 221 1.838073 ATCCCCGTCGGAACAAAGCT 61.838 55.000 14.39 0.00 46.47 3.74
221 222 1.599797 CCCCGTCGGAACAAAGCTT 60.600 57.895 14.39 0.00 0.00 3.74
222 223 1.170290 CCCCGTCGGAACAAAGCTTT 61.170 55.000 14.39 5.69 0.00 3.51
223 224 0.237498 CCCGTCGGAACAAAGCTTTC 59.763 55.000 14.39 0.00 0.00 2.62
224 225 0.941542 CCGTCGGAACAAAGCTTTCA 59.058 50.000 9.23 0.00 0.00 2.69
225 226 1.333791 CCGTCGGAACAAAGCTTTCAC 60.334 52.381 9.23 3.60 0.00 3.18
226 227 1.333791 CGTCGGAACAAAGCTTTCACC 60.334 52.381 9.23 11.59 0.00 4.02
227 228 1.947456 GTCGGAACAAAGCTTTCACCT 59.053 47.619 9.23 0.00 0.00 4.00
228 229 3.135994 GTCGGAACAAAGCTTTCACCTA 58.864 45.455 9.23 2.64 0.00 3.08
229 230 3.186613 GTCGGAACAAAGCTTTCACCTAG 59.813 47.826 9.23 0.00 0.00 3.02
230 231 3.070446 TCGGAACAAAGCTTTCACCTAGA 59.930 43.478 9.23 2.40 0.00 2.43
231 232 3.433615 CGGAACAAAGCTTTCACCTAGAG 59.566 47.826 9.23 0.00 0.00 2.43
232 233 3.189495 GGAACAAAGCTTTCACCTAGAGC 59.811 47.826 9.23 0.00 36.68 4.09
234 235 3.669536 ACAAAGCTTTCACCTAGAGCTC 58.330 45.455 9.23 5.27 45.42 4.09
235 236 3.006247 CAAAGCTTTCACCTAGAGCTCC 58.994 50.000 9.23 0.00 45.42 4.70
236 237 1.944177 AGCTTTCACCTAGAGCTCCA 58.056 50.000 10.93 0.00 42.80 3.86
237 238 1.552792 AGCTTTCACCTAGAGCTCCAC 59.447 52.381 10.93 0.00 42.80 4.02
238 239 1.276421 GCTTTCACCTAGAGCTCCACA 59.724 52.381 10.93 0.00 33.72 4.17
239 240 2.933056 GCTTTCACCTAGAGCTCCACAC 60.933 54.545 10.93 0.00 33.72 3.82
240 241 2.310779 TTCACCTAGAGCTCCACACT 57.689 50.000 10.93 0.00 0.00 3.55
241 242 3.451402 TTCACCTAGAGCTCCACACTA 57.549 47.619 10.93 0.00 0.00 2.74
242 243 2.724454 TCACCTAGAGCTCCACACTAC 58.276 52.381 10.93 0.00 0.00 2.73
243 244 1.751924 CACCTAGAGCTCCACACTACC 59.248 57.143 10.93 0.00 0.00 3.18
244 245 1.025812 CCTAGAGCTCCACACTACCG 58.974 60.000 10.93 0.00 0.00 4.02
245 246 0.382515 CTAGAGCTCCACACTACCGC 59.617 60.000 10.93 0.00 0.00 5.68
246 247 1.035932 TAGAGCTCCACACTACCGCC 61.036 60.000 10.93 0.00 0.00 6.13
247 248 2.603473 AGCTCCACACTACCGCCA 60.603 61.111 0.00 0.00 0.00 5.69
248 249 2.125512 GCTCCACACTACCGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
249 250 2.125512 CTCCACACTACCGCCAGC 60.126 66.667 0.00 0.00 0.00 4.85
250 251 2.603473 TCCACACTACCGCCAGCT 60.603 61.111 0.00 0.00 0.00 4.24
251 252 2.125512 CCACACTACCGCCAGCTC 60.126 66.667 0.00 0.00 0.00 4.09
252 253 2.656646 CACACTACCGCCAGCTCA 59.343 61.111 0.00 0.00 0.00 4.26
253 254 1.219124 CACACTACCGCCAGCTCAT 59.781 57.895 0.00 0.00 0.00 2.90
254 255 0.807667 CACACTACCGCCAGCTCATC 60.808 60.000 0.00 0.00 0.00 2.92
255 256 1.589993 CACTACCGCCAGCTCATCG 60.590 63.158 0.00 0.00 0.00 3.84
256 257 2.052690 ACTACCGCCAGCTCATCGT 61.053 57.895 0.00 0.00 0.00 3.73
257 258 0.750546 ACTACCGCCAGCTCATCGTA 60.751 55.000 0.00 0.00 0.00 3.43
258 259 0.317938 CTACCGCCAGCTCATCGTAC 60.318 60.000 0.00 0.00 0.00 3.67
259 260 1.731433 TACCGCCAGCTCATCGTACC 61.731 60.000 0.00 0.00 0.00 3.34
260 261 2.279517 CGCCAGCTCATCGTACCC 60.280 66.667 0.00 0.00 0.00 3.69
261 262 2.109181 GCCAGCTCATCGTACCCC 59.891 66.667 0.00 0.00 0.00 4.95
262 263 2.417516 CCAGCTCATCGTACCCCG 59.582 66.667 0.00 0.00 38.13 5.73
263 264 2.279517 CAGCTCATCGTACCCCGC 60.280 66.667 0.00 0.00 36.19 6.13
264 265 3.900892 AGCTCATCGTACCCCGCG 61.901 66.667 0.00 0.00 36.19 6.46
265 266 4.944372 GCTCATCGTACCCCGCGG 62.944 72.222 21.04 21.04 36.19 6.46
284 285 4.148825 AGTCGATCCGGCTGCACC 62.149 66.667 0.50 0.00 41.45 5.01
299 300 1.067916 CACCAGCAGCCACCAAAAC 59.932 57.895 0.00 0.00 0.00 2.43
305 306 1.355720 AGCAGCCACCAAAACCTATCT 59.644 47.619 0.00 0.00 0.00 1.98
313 314 3.947834 CACCAAAACCTATCTCCATCCAC 59.052 47.826 0.00 0.00 0.00 4.02
323 324 5.723405 CCTATCTCCATCCACCAATGATCTA 59.277 44.000 0.00 0.00 0.00 1.98
330 331 6.329986 TCCATCCACCAATGATCTAGTGTTAT 59.670 38.462 0.00 0.00 0.00 1.89
331 332 7.000472 CCATCCACCAATGATCTAGTGTTATT 59.000 38.462 0.00 0.00 0.00 1.40
343 344 8.585018 TGATCTAGTGTTATTGTGAACTCTTCA 58.415 33.333 0.00 0.00 35.41 3.02
350 351 6.481976 TGTTATTGTGAACTCTTCAACGACAT 59.518 34.615 0.00 0.00 42.15 3.06
354 355 4.745125 TGTGAACTCTTCAACGACATCTTC 59.255 41.667 0.00 0.00 42.15 2.87
357 358 5.463392 TGAACTCTTCAACGACATCTTCAAG 59.537 40.000 0.00 0.00 36.59 3.02
367 371 6.305693 ACGACATCTTCAAGAAGGAAAAAG 57.694 37.500 9.73 1.60 38.88 2.27
389 393 2.669133 CCCATGGTCTCCTTCGCCA 61.669 63.158 11.73 0.00 36.64 5.69
390 394 1.450312 CCATGGTCTCCTTCGCCAC 60.450 63.158 2.57 0.00 34.84 5.01
391 395 1.811266 CATGGTCTCCTTCGCCACG 60.811 63.158 0.00 0.00 34.84 4.94
419 424 2.435938 CTCGCCGGCCAAAGCTTA 60.436 61.111 23.46 0.00 39.73 3.09
420 425 2.744709 TCGCCGGCCAAAGCTTAC 60.745 61.111 23.46 0.00 39.73 2.34
421 426 3.053291 CGCCGGCCAAAGCTTACA 61.053 61.111 23.46 0.00 39.73 2.41
424 429 0.246360 GCCGGCCAAAGCTTACATTT 59.754 50.000 18.11 0.00 39.73 2.32
425 430 1.735700 GCCGGCCAAAGCTTACATTTC 60.736 52.381 18.11 0.00 39.73 2.17
428 433 1.899142 GGCCAAAGCTTACATTTCCCA 59.101 47.619 0.00 0.00 39.73 4.37
430 435 3.588955 GCCAAAGCTTACATTTCCCAAG 58.411 45.455 0.00 0.00 35.50 3.61
431 436 3.258123 GCCAAAGCTTACATTTCCCAAGA 59.742 43.478 0.00 0.00 35.50 3.02
432 437 4.809673 CCAAAGCTTACATTTCCCAAGAC 58.190 43.478 0.00 0.00 0.00 3.01
443 449 3.824001 TTCCCAAGACCATGGATTTCA 57.176 42.857 21.47 0.00 43.54 2.69
457 463 0.892755 ATTTCAGGCCGTCTACGTCA 59.107 50.000 0.00 0.00 37.74 4.35
472 478 6.309494 CGTCTACGTCATTTTGGTTATCTTGA 59.691 38.462 0.00 0.00 34.11 3.02
475 481 8.879759 TCTACGTCATTTTGGTTATCTTGATTC 58.120 33.333 0.00 0.00 0.00 2.52
476 482 7.687941 ACGTCATTTTGGTTATCTTGATTCT 57.312 32.000 0.00 0.00 0.00 2.40
542 548 1.133790 GCCTTGCTTGCTTGTGATAGG 59.866 52.381 0.00 0.00 0.00 2.57
555 561 5.661458 CTTGTGATAGGTAGGGTGTTACAG 58.339 45.833 0.00 0.00 0.00 2.74
559 565 2.592102 AGGTAGGGTGTTACAGTCGA 57.408 50.000 0.00 0.00 0.00 4.20
594 600 7.967890 AGAAAACTTGCAAATCCCTAAAATG 57.032 32.000 0.00 0.00 0.00 2.32
597 603 8.922931 AAAACTTGCAAATCCCTAAAATGAAT 57.077 26.923 0.00 0.00 0.00 2.57
617 623 8.882415 ATGAATTGATAAAATTGACATCAGCC 57.118 30.769 0.00 0.00 30.77 4.85
618 624 7.838884 TGAATTGATAAAATTGACATCAGCCA 58.161 30.769 0.00 0.00 30.77 4.75
619 625 7.760794 TGAATTGATAAAATTGACATCAGCCAC 59.239 33.333 0.00 0.00 30.77 5.01
620 626 6.839124 TTGATAAAATTGACATCAGCCACT 57.161 33.333 0.00 0.00 30.77 4.00
621 627 6.198650 TGATAAAATTGACATCAGCCACTG 57.801 37.500 0.00 0.00 0.00 3.66
622 628 5.945191 TGATAAAATTGACATCAGCCACTGA 59.055 36.000 0.00 0.00 44.99 3.41
623 629 4.510038 AAAATTGACATCAGCCACTGAC 57.490 40.909 0.00 0.00 43.63 3.51
624 630 3.430042 AATTGACATCAGCCACTGACT 57.570 42.857 0.00 0.00 43.63 3.41
625 631 4.558226 AATTGACATCAGCCACTGACTA 57.442 40.909 0.00 0.00 43.63 2.59
626 632 3.319137 TTGACATCAGCCACTGACTAC 57.681 47.619 0.00 0.00 43.63 2.73
627 633 2.247358 TGACATCAGCCACTGACTACA 58.753 47.619 0.00 0.00 43.63 2.74
628 634 2.029020 TGACATCAGCCACTGACTACAC 60.029 50.000 0.00 0.00 43.63 2.90
629 635 1.067565 ACATCAGCCACTGACTACACG 60.068 52.381 0.00 0.00 43.63 4.49
630 636 1.067565 CATCAGCCACTGACTACACGT 60.068 52.381 0.00 0.00 43.63 4.49
631 637 0.313987 TCAGCCACTGACTACACGTG 59.686 55.000 15.48 15.48 35.39 4.49
632 638 0.032130 CAGCCACTGACTACACGTGT 59.968 55.000 26.52 26.52 32.44 4.49
633 639 1.268625 CAGCCACTGACTACACGTGTA 59.731 52.381 25.88 25.88 32.44 2.90
634 640 2.094700 CAGCCACTGACTACACGTGTAT 60.095 50.000 27.50 17.54 32.44 2.29
635 641 3.128068 CAGCCACTGACTACACGTGTATA 59.872 47.826 27.50 15.97 32.44 1.47
636 642 3.952323 AGCCACTGACTACACGTGTATAT 59.048 43.478 27.50 18.89 0.00 0.86
637 643 4.042398 GCCACTGACTACACGTGTATATG 58.958 47.826 27.50 18.52 0.00 1.78
638 644 4.201980 GCCACTGACTACACGTGTATATGA 60.202 45.833 27.50 12.97 0.00 2.15
639 645 5.511571 CCACTGACTACACGTGTATATGAG 58.488 45.833 27.50 22.29 0.00 2.90
640 646 5.066117 CCACTGACTACACGTGTATATGAGT 59.934 44.000 27.50 22.70 0.00 3.41
641 647 6.404403 CCACTGACTACACGTGTATATGAGTT 60.404 42.308 27.50 7.08 0.00 3.01
642 648 6.469275 CACTGACTACACGTGTATATGAGTTG 59.531 42.308 27.50 19.78 0.00 3.16
643 649 6.373495 ACTGACTACACGTGTATATGAGTTGA 59.627 38.462 27.50 13.11 0.00 3.18
644 650 7.094506 ACTGACTACACGTGTATATGAGTTGAA 60.095 37.037 27.50 12.36 0.00 2.69
645 651 7.595604 TGACTACACGTGTATATGAGTTGAAA 58.404 34.615 27.50 8.88 0.00 2.69
646 652 8.083462 TGACTACACGTGTATATGAGTTGAAAA 58.917 33.333 27.50 3.39 0.00 2.29
695 701 2.867109 AGTCACACATTGCTAAGCCT 57.133 45.000 0.00 0.00 0.00 4.58
699 705 4.020218 AGTCACACATTGCTAAGCCTAGAA 60.020 41.667 0.00 0.00 0.00 2.10
806 828 8.818057 ACTTTTGTCTATCTACGTTCATAATGC 58.182 33.333 0.00 0.00 0.00 3.56
808 830 8.710835 TTTGTCTATCTACGTTCATAATGCAA 57.289 30.769 0.00 0.00 0.00 4.08
809 831 7.930513 TGTCTATCTACGTTCATAATGCAAG 57.069 36.000 0.00 0.00 0.00 4.01
811 833 7.648112 TGTCTATCTACGTTCATAATGCAAGAC 59.352 37.037 0.00 0.00 0.00 3.01
813 835 4.740268 TCTACGTTCATAATGCAAGACGT 58.260 39.130 13.85 13.85 36.53 4.34
814 836 5.165676 TCTACGTTCATAATGCAAGACGTT 58.834 37.500 14.35 0.00 34.39 3.99
817 839 5.516090 ACGTTCATAATGCAAGACGTTTTT 58.484 33.333 0.00 0.00 0.00 1.94
853 1008 9.798994 GAGGAAGTATATTGTTTTAGACTCGAA 57.201 33.333 0.00 0.00 0.00 3.71
866 1021 3.381949 AGACTCGAACTAGTGTTTGCAC 58.618 45.455 0.00 0.00 45.57 4.57
939 1105 3.686016 GAGTGCTCCCTATTTCCAACAA 58.314 45.455 0.00 0.00 0.00 2.83
953 1119 1.135603 CCAACAACATCCAGACGCATG 60.136 52.381 0.00 0.00 0.00 4.06
1000 1166 1.003003 TCAACGACCATGGCATTGAGA 59.997 47.619 13.04 0.01 0.00 3.27
1081 1247 0.608640 CACTCCACCAGTCCACCTAC 59.391 60.000 0.00 0.00 30.26 3.18
1082 1248 0.190069 ACTCCACCAGTCCACCTACA 59.810 55.000 0.00 0.00 0.00 2.74
1083 1249 0.608640 CTCCACCAGTCCACCTACAC 59.391 60.000 0.00 0.00 0.00 2.90
1097 1263 2.158755 ACCTACACATATCCAAGCAGCC 60.159 50.000 0.00 0.00 0.00 4.85
1269 1437 3.078097 CAACATCACCGTTTCATACCCA 58.922 45.455 0.00 0.00 0.00 4.51
1332 1509 1.220206 CTTCCAGCTCGAGTGCCAT 59.780 57.895 15.13 0.00 0.00 4.40
1346 1529 3.036429 GCCATGACTCCGGCCTCTT 62.036 63.158 0.00 0.00 42.82 2.85
1632 3093 2.762459 TGCCGCCCTTCGAGGTAT 60.762 61.111 0.00 0.00 41.67 2.73
1641 3102 0.886490 CTTCGAGGTATGCCATGCCC 60.886 60.000 8.32 0.00 35.38 5.36
1899 3372 3.481903 ATCGACAACTGCAGCGCG 61.482 61.111 15.27 12.41 0.00 6.86
2016 3492 0.179092 GCTACGACGGCAACCCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
2023 3508 0.529992 CGGCAACCCTTATCTCGACC 60.530 60.000 0.00 0.00 0.00 4.79
2059 3591 2.040278 ACACACCACATAGCTCCAACAT 59.960 45.455 0.00 0.00 0.00 2.71
2061 3595 3.084039 ACACCACATAGCTCCAACATTG 58.916 45.455 0.00 0.00 0.00 2.82
2082 3616 4.278310 TGGAGTATAGCTGTTGTGCTCTA 58.722 43.478 0.00 0.00 42.97 2.43
2088 3622 7.653647 AGTATAGCTGTTGTGCTCTATTACTC 58.346 38.462 0.00 0.00 42.97 2.59
2090 3624 4.499183 AGCTGTTGTGCTCTATTACTCAC 58.501 43.478 0.00 0.00 39.34 3.51
2091 3625 4.221703 AGCTGTTGTGCTCTATTACTCACT 59.778 41.667 0.00 0.00 39.34 3.41
2094 3628 4.106197 GTTGTGCTCTATTACTCACTCCG 58.894 47.826 0.00 0.00 0.00 4.63
2095 3629 3.617284 TGTGCTCTATTACTCACTCCGA 58.383 45.455 0.00 0.00 0.00 4.55
2096 3630 4.207955 TGTGCTCTATTACTCACTCCGAT 58.792 43.478 0.00 0.00 0.00 4.18
2097 3631 4.276183 TGTGCTCTATTACTCACTCCGATC 59.724 45.833 0.00 0.00 0.00 3.69
2098 3632 3.821600 TGCTCTATTACTCACTCCGATCC 59.178 47.826 0.00 0.00 0.00 3.36
2099 3633 3.821600 GCTCTATTACTCACTCCGATCCA 59.178 47.826 0.00 0.00 0.00 3.41
2101 3635 5.648526 GCTCTATTACTCACTCCGATCCATA 59.351 44.000 0.00 0.00 0.00 2.74
2102 3636 6.320164 GCTCTATTACTCACTCCGATCCATAT 59.680 42.308 0.00 0.00 0.00 1.78
2103 3637 7.147983 GCTCTATTACTCACTCCGATCCATATT 60.148 40.741 0.00 0.00 0.00 1.28
2105 3639 9.749340 TCTATTACTCACTCCGATCCATATTAA 57.251 33.333 0.00 0.00 0.00 1.40
2111 3645 7.661847 ACTCACTCCGATCCATATTAATTTTCC 59.338 37.037 0.00 0.00 0.00 3.13
2112 3646 6.940298 TCACTCCGATCCATATTAATTTTCCC 59.060 38.462 0.00 0.00 0.00 3.97
2113 3647 6.942576 CACTCCGATCCATATTAATTTTCCCT 59.057 38.462 0.00 0.00 0.00 4.20
2153 3700 8.588290 ATGTATATCAGAGGAAGGACTACATC 57.412 38.462 0.00 0.00 0.00 3.06
2154 3701 7.760607 TGTATATCAGAGGAAGGACTACATCT 58.239 38.462 0.00 0.00 0.00 2.90
2155 3702 7.885922 TGTATATCAGAGGAAGGACTACATCTC 59.114 40.741 0.00 0.00 0.00 2.75
2156 3703 4.871871 TCAGAGGAAGGACTACATCTCT 57.128 45.455 0.00 0.00 32.51 3.10
2158 3705 5.686753 TCAGAGGAAGGACTACATCTCTAC 58.313 45.833 0.00 0.00 31.32 2.59
2346 4176 1.620323 GCAGGCCAAAGGACAATTTCT 59.380 47.619 5.01 0.00 29.21 2.52
2349 4179 1.550524 GGCCAAAGGACAATTTCTCCC 59.449 52.381 0.00 0.00 0.00 4.30
2367 4197 1.630148 CCTAGCTCTGAAAACCGTCG 58.370 55.000 0.00 0.00 0.00 5.12
2544 4483 0.618968 CTTCTGGCTCTACCTGGGGT 60.619 60.000 0.00 0.00 40.22 4.95
2573 4512 6.322201 AGAAGAGGAAACTGATCAAAGCAAAA 59.678 34.615 0.00 0.00 44.43 2.44
2615 4554 1.300971 GAGGCGTCATCTTGCAGCAA 61.301 55.000 7.81 7.81 0.00 3.91
2644 4583 3.536917 CCATAGAGGTGCCGCCGA 61.537 66.667 0.00 0.00 43.70 5.54
2679 4618 3.802685 CGGGTTCAAGATATTCTCGGAAC 59.197 47.826 10.93 10.93 38.70 3.62
2687 4626 6.321435 TCAAGATATTCTCGGAACAAGAGCTA 59.679 38.462 0.00 0.00 0.00 3.32
2689 4628 5.830991 AGATATTCTCGGAACAAGAGCTAGT 59.169 40.000 0.00 0.00 0.00 2.57
2789 4728 1.003118 GACAAGACTGTGGTGGCCATA 59.997 52.381 9.72 0.00 35.30 2.74
2792 4731 2.890311 CAAGACTGTGGTGGCCATAAAA 59.110 45.455 9.72 0.00 35.28 1.52
2816 4755 5.402054 AGTCTAAGATGATGGAGGAGTCT 57.598 43.478 0.00 0.00 0.00 3.24
2876 4815 3.343617 CCAGATCAACCACCGTAATGTT 58.656 45.455 0.00 0.00 0.00 2.71
2904 4843 1.597854 CTCGGTTGCTGCCTTGACA 60.598 57.895 0.00 0.00 0.00 3.58
2906 4845 0.323302 TCGGTTGCTGCCTTGACATA 59.677 50.000 0.00 0.00 0.00 2.29
2924 4863 1.264749 TAGAGGTGCCGATGCTGGTT 61.265 55.000 0.00 0.00 38.71 3.67
3002 4944 1.559682 ACTGACACAACCTTGGACACT 59.440 47.619 0.00 0.00 0.00 3.55
3017 4959 0.393944 ACACTCGTCTCCGGATAGCA 60.394 55.000 3.57 0.00 33.95 3.49
3026 4968 1.109920 TCCGGATAGCAGCAGAGTCC 61.110 60.000 0.00 0.00 0.00 3.85
3263 5205 5.728637 TGACAGACAAGAGTGATGTGTAT 57.271 39.130 0.00 0.00 31.36 2.29
3284 5227 2.657143 AGTTTTGGGGTCGTGCTTTTA 58.343 42.857 0.00 0.00 0.00 1.52
3326 5272 3.687321 GATCTGCTTCAGCGGGCCA 62.687 63.158 4.39 0.00 46.99 5.36
3341 5287 1.381872 GCCAGAGGACAGGAGCCTA 60.382 63.158 0.00 0.00 35.44 3.93
3401 5347 3.249189 AAGCTCCTGGACGGCCAA 61.249 61.111 13.37 0.00 45.41 4.52
3419 5365 2.041620 CCAAGTGAGGAAGGAAATGGGA 59.958 50.000 0.00 0.00 0.00 4.37
3425 5371 0.330267 GGAAGGAAATGGGACCCGAA 59.670 55.000 5.91 0.00 0.00 4.30
3565 5511 2.203480 GGGTCAAGCTGGTGGCAA 60.203 61.111 0.00 0.00 44.79 4.52
3695 5650 6.969828 ACTTTAAGCTTGTAGACTATGTGC 57.030 37.500 9.86 0.00 0.00 4.57
3783 5751 9.482627 CACTAGATTGAAGAAGACTGTAAAACT 57.517 33.333 0.00 0.00 0.00 2.66
3916 5887 5.592054 GTTCCTTTTCTTGTTTCTTCTGGG 58.408 41.667 0.00 0.00 0.00 4.45
3921 5893 6.878923 CCTTTTCTTGTTTCTTCTGGGTTTTT 59.121 34.615 0.00 0.00 0.00 1.94
3950 5923 7.756558 TGTTTTTGCCATTTTACCTTTTTCTG 58.243 30.769 0.00 0.00 0.00 3.02
3955 5928 5.362430 TGCCATTTTACCTTTTTCTGTCAGT 59.638 36.000 0.00 0.00 0.00 3.41
4032 6010 2.348666 CGGCCTCTGTCTAATGTTTTCG 59.651 50.000 0.00 0.00 0.00 3.46
4091 6073 4.451150 TGCTTCTACTGCCCGCCG 62.451 66.667 0.00 0.00 0.00 6.46
4098 6080 1.455402 TACTGCCCGCCGTACCATA 60.455 57.895 0.00 0.00 0.00 2.74
4100 6082 1.667830 CTGCCCGCCGTACCATATG 60.668 63.158 0.00 0.00 0.00 1.78
4102 6084 1.959226 GCCCGCCGTACCATATGTG 60.959 63.158 1.24 0.00 0.00 3.21
4119 6136 6.772233 CCATATGTGGTGATAATTTCTGGTGA 59.228 38.462 0.00 0.00 40.83 4.02
4152 6169 4.260948 GGTCACAGAAAGAGAAGCAAACAG 60.261 45.833 0.00 0.00 0.00 3.16
4153 6170 4.572389 GTCACAGAAAGAGAAGCAAACAGA 59.428 41.667 0.00 0.00 0.00 3.41
4154 6171 4.813161 TCACAGAAAGAGAAGCAAACAGAG 59.187 41.667 0.00 0.00 0.00 3.35
4155 6172 4.574013 CACAGAAAGAGAAGCAAACAGAGT 59.426 41.667 0.00 0.00 0.00 3.24
4156 6173 5.065731 CACAGAAAGAGAAGCAAACAGAGTT 59.934 40.000 0.00 0.00 0.00 3.01
4187 7097 0.835941 AGCTGCTCCCGAAATCATCT 59.164 50.000 0.00 0.00 0.00 2.90
4190 7100 0.252761 TGCTCCCGAAATCATCTGCA 59.747 50.000 0.00 0.00 0.00 4.41
4201 7260 5.008316 CGAAATCATCTGCATCAATTCCAGA 59.992 40.000 0.00 0.00 39.65 3.86
4204 7263 4.851843 TCATCTGCATCAATTCCAGACTT 58.148 39.130 0.00 0.00 38.32 3.01
4254 7596 8.596380 CACCTCTGACTCGAAATATAGAAAAAC 58.404 37.037 0.00 0.00 0.00 2.43
4262 7604 7.917505 ACTCGAAATATAGAAAAACGGACGTAT 59.082 33.333 0.00 0.00 0.00 3.06
4383 7868 2.778299 CGTTCATTCTGGAAACCCTCA 58.222 47.619 0.00 0.00 0.00 3.86
4422 8080 3.309848 CCCCAAACATCACTATCCCCTTT 60.310 47.826 0.00 0.00 0.00 3.11
4433 8091 4.656112 CACTATCCCCTTTCATCTAGTGGT 59.344 45.833 0.00 0.00 34.90 4.16
4555 8424 3.057315 TGAGATTTGTTTTGCTAGCTGCC 60.057 43.478 17.23 1.89 42.00 4.85
4594 8463 3.601685 CAAACGGGCCTTGGCGTT 61.602 61.111 11.15 11.15 0.00 4.84
4642 8566 0.247460 CTGCATGAGGAGTTCACCGA 59.753 55.000 0.00 0.00 38.99 4.69
4675 8599 4.141287 CACTCAGATCCAGTACCTCTAGG 58.859 52.174 0.00 0.00 42.17 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.184167 CCTTGCCGTCGTGTGGTTT 61.184 57.895 0.00 0.00 0.00 3.27
1 2 2.590575 CCTTGCCGTCGTGTGGTT 60.591 61.111 0.00 0.00 0.00 3.67
2 3 3.394635 AACCTTGCCGTCGTGTGGT 62.395 57.895 0.00 0.00 0.00 4.16
4 5 1.227999 ATCAACCTTGCCGTCGTGTG 61.228 55.000 0.00 0.00 0.00 3.82
5 6 0.534203 AATCAACCTTGCCGTCGTGT 60.534 50.000 0.00 0.00 0.00 4.49
7 8 1.274167 TCTAATCAACCTTGCCGTCGT 59.726 47.619 0.00 0.00 0.00 4.34
9 10 2.093658 TCCTCTAATCAACCTTGCCGTC 60.094 50.000 0.00 0.00 0.00 4.79
10 11 1.906574 TCCTCTAATCAACCTTGCCGT 59.093 47.619 0.00 0.00 0.00 5.68
11 12 2.280628 GTCCTCTAATCAACCTTGCCG 58.719 52.381 0.00 0.00 0.00 5.69
12 13 3.350219 TGTCCTCTAATCAACCTTGCC 57.650 47.619 0.00 0.00 0.00 4.52
13 14 4.686839 GTTGTCCTCTAATCAACCTTGC 57.313 45.455 0.00 0.00 36.47 4.01
18 19 4.009675 TGCATGGTTGTCCTCTAATCAAC 58.990 43.478 0.00 0.00 40.13 3.18
19 20 4.299586 TGCATGGTTGTCCTCTAATCAA 57.700 40.909 0.00 0.00 34.23 2.57
20 21 3.998913 TGCATGGTTGTCCTCTAATCA 57.001 42.857 0.00 0.00 34.23 2.57
21 22 5.643379 TTTTGCATGGTTGTCCTCTAATC 57.357 39.130 0.00 0.00 34.23 1.75
22 23 5.304101 TGTTTTTGCATGGTTGTCCTCTAAT 59.696 36.000 0.00 0.00 34.23 1.73
23 24 4.646945 TGTTTTTGCATGGTTGTCCTCTAA 59.353 37.500 0.00 0.00 34.23 2.10
24 25 4.211125 TGTTTTTGCATGGTTGTCCTCTA 58.789 39.130 0.00 0.00 34.23 2.43
25 26 3.030291 TGTTTTTGCATGGTTGTCCTCT 58.970 40.909 0.00 0.00 34.23 3.69
26 27 3.451141 TGTTTTTGCATGGTTGTCCTC 57.549 42.857 0.00 0.00 34.23 3.71
27 28 3.055530 TGTTGTTTTTGCATGGTTGTCCT 60.056 39.130 0.00 0.00 34.23 3.85
28 29 3.265791 TGTTGTTTTTGCATGGTTGTCC 58.734 40.909 0.00 0.00 0.00 4.02
29 30 4.935885 TTGTTGTTTTTGCATGGTTGTC 57.064 36.364 0.00 0.00 0.00 3.18
30 31 6.992063 TTATTGTTGTTTTTGCATGGTTGT 57.008 29.167 0.00 0.00 0.00 3.32
31 32 7.587028 GTCATTATTGTTGTTTTTGCATGGTTG 59.413 33.333 0.00 0.00 0.00 3.77
32 33 7.518052 CGTCATTATTGTTGTTTTTGCATGGTT 60.518 33.333 0.00 0.00 0.00 3.67
33 34 6.073873 CGTCATTATTGTTGTTTTTGCATGGT 60.074 34.615 0.00 0.00 0.00 3.55
34 35 6.145209 TCGTCATTATTGTTGTTTTTGCATGG 59.855 34.615 0.00 0.00 0.00 3.66
35 36 7.103159 TCGTCATTATTGTTGTTTTTGCATG 57.897 32.000 0.00 0.00 0.00 4.06
36 37 7.706281 TTCGTCATTATTGTTGTTTTTGCAT 57.294 28.000 0.00 0.00 0.00 3.96
37 38 7.706281 ATTCGTCATTATTGTTGTTTTTGCA 57.294 28.000 0.00 0.00 0.00 4.08
38 39 8.695284 TGTATTCGTCATTATTGTTGTTTTTGC 58.305 29.630 0.00 0.00 0.00 3.68
41 42 8.911662 GCTTGTATTCGTCATTATTGTTGTTTT 58.088 29.630 0.00 0.00 0.00 2.43
42 43 8.079203 TGCTTGTATTCGTCATTATTGTTGTTT 58.921 29.630 0.00 0.00 0.00 2.83
43 44 7.589395 TGCTTGTATTCGTCATTATTGTTGTT 58.411 30.769 0.00 0.00 0.00 2.83
44 45 7.139896 TGCTTGTATTCGTCATTATTGTTGT 57.860 32.000 0.00 0.00 0.00 3.32
45 46 6.195244 GCTGCTTGTATTCGTCATTATTGTTG 59.805 38.462 0.00 0.00 0.00 3.33
46 47 6.128035 TGCTGCTTGTATTCGTCATTATTGTT 60.128 34.615 0.00 0.00 0.00 2.83
47 48 5.353956 TGCTGCTTGTATTCGTCATTATTGT 59.646 36.000 0.00 0.00 0.00 2.71
48 49 5.809464 TGCTGCTTGTATTCGTCATTATTG 58.191 37.500 0.00 0.00 0.00 1.90
49 50 6.484643 AGATGCTGCTTGTATTCGTCATTATT 59.515 34.615 0.00 0.00 0.00 1.40
50 51 5.994054 AGATGCTGCTTGTATTCGTCATTAT 59.006 36.000 0.00 0.00 0.00 1.28
51 52 5.359756 AGATGCTGCTTGTATTCGTCATTA 58.640 37.500 0.00 0.00 0.00 1.90
52 53 4.194640 AGATGCTGCTTGTATTCGTCATT 58.805 39.130 0.00 0.00 0.00 2.57
53 54 3.801698 AGATGCTGCTTGTATTCGTCAT 58.198 40.909 0.00 0.00 0.00 3.06
54 55 3.251479 AGATGCTGCTTGTATTCGTCA 57.749 42.857 0.00 0.00 0.00 4.35
55 56 5.920840 TGTATAGATGCTGCTTGTATTCGTC 59.079 40.000 9.86 2.18 0.00 4.20
56 57 5.842907 TGTATAGATGCTGCTTGTATTCGT 58.157 37.500 9.86 0.00 0.00 3.85
57 58 6.769608 TTGTATAGATGCTGCTTGTATTCG 57.230 37.500 9.86 0.00 0.00 3.34
58 59 7.074502 GCTTTGTATAGATGCTGCTTGTATTC 58.925 38.462 9.86 6.48 0.00 1.75
59 60 6.543465 TGCTTTGTATAGATGCTGCTTGTATT 59.457 34.615 9.86 0.00 0.00 1.89
60 61 6.057533 TGCTTTGTATAGATGCTGCTTGTAT 58.942 36.000 9.57 9.57 0.00 2.29
61 62 5.427378 TGCTTTGTATAGATGCTGCTTGTA 58.573 37.500 0.00 0.00 0.00 2.41
62 63 4.264253 TGCTTTGTATAGATGCTGCTTGT 58.736 39.130 0.00 0.00 0.00 3.16
63 64 4.261072 CCTGCTTTGTATAGATGCTGCTTG 60.261 45.833 0.00 0.00 0.00 4.01
64 65 3.881688 CCTGCTTTGTATAGATGCTGCTT 59.118 43.478 0.00 0.00 0.00 3.91
65 66 3.135348 TCCTGCTTTGTATAGATGCTGCT 59.865 43.478 0.00 0.00 0.00 4.24
66 67 3.249559 GTCCTGCTTTGTATAGATGCTGC 59.750 47.826 0.00 0.00 0.00 5.25
67 68 4.701765 AGTCCTGCTTTGTATAGATGCTG 58.298 43.478 0.00 0.00 0.00 4.41
68 69 4.202305 GGAGTCCTGCTTTGTATAGATGCT 60.202 45.833 0.41 0.00 0.00 3.79
69 70 4.061596 GGAGTCCTGCTTTGTATAGATGC 58.938 47.826 0.41 0.00 0.00 3.91
70 71 5.053145 GTGGAGTCCTGCTTTGTATAGATG 58.947 45.833 11.33 0.00 0.00 2.90
71 72 4.716784 TGTGGAGTCCTGCTTTGTATAGAT 59.283 41.667 11.33 0.00 0.00 1.98
72 73 4.093743 TGTGGAGTCCTGCTTTGTATAGA 58.906 43.478 11.33 0.00 0.00 1.98
73 74 4.471904 TGTGGAGTCCTGCTTTGTATAG 57.528 45.455 11.33 0.00 0.00 1.31
74 75 4.564821 GGTTGTGGAGTCCTGCTTTGTATA 60.565 45.833 11.33 0.00 0.00 1.47
75 76 3.412386 GTTGTGGAGTCCTGCTTTGTAT 58.588 45.455 11.33 0.00 0.00 2.29
76 77 2.486548 GGTTGTGGAGTCCTGCTTTGTA 60.487 50.000 11.33 0.00 0.00 2.41
77 78 1.680338 GTTGTGGAGTCCTGCTTTGT 58.320 50.000 11.33 0.00 0.00 2.83
78 79 0.954452 GGTTGTGGAGTCCTGCTTTG 59.046 55.000 11.33 0.00 0.00 2.77
79 80 0.550914 TGGTTGTGGAGTCCTGCTTT 59.449 50.000 11.33 0.00 0.00 3.51
80 81 0.550914 TTGGTTGTGGAGTCCTGCTT 59.449 50.000 11.33 0.00 0.00 3.91
81 82 0.179018 GTTGGTTGTGGAGTCCTGCT 60.179 55.000 11.33 0.00 0.00 4.24
82 83 1.507141 CGTTGGTTGTGGAGTCCTGC 61.507 60.000 11.33 4.05 0.00 4.85
83 84 0.105964 TCGTTGGTTGTGGAGTCCTG 59.894 55.000 11.33 0.00 0.00 3.86
84 85 0.106149 GTCGTTGGTTGTGGAGTCCT 59.894 55.000 11.33 0.00 0.00 3.85
85 86 0.106149 AGTCGTTGGTTGTGGAGTCC 59.894 55.000 0.73 0.73 0.00 3.85
86 87 1.202486 TCAGTCGTTGGTTGTGGAGTC 60.202 52.381 0.00 0.00 0.00 3.36
87 88 0.828022 TCAGTCGTTGGTTGTGGAGT 59.172 50.000 0.00 0.00 0.00 3.85
88 89 1.502231 CTCAGTCGTTGGTTGTGGAG 58.498 55.000 0.00 0.00 0.00 3.86
89 90 0.105964 CCTCAGTCGTTGGTTGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
90 91 0.884704 CCCTCAGTCGTTGGTTGTGG 60.885 60.000 0.00 0.00 0.00 4.17
91 92 1.507141 GCCCTCAGTCGTTGGTTGTG 61.507 60.000 0.00 0.00 0.00 3.33
92 93 1.227853 GCCCTCAGTCGTTGGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
93 94 1.966451 GGCCCTCAGTCGTTGGTTG 60.966 63.158 0.00 0.00 0.00 3.77
94 95 1.990160 TTGGCCCTCAGTCGTTGGTT 61.990 55.000 0.00 0.00 0.00 3.67
95 96 1.990160 TTTGGCCCTCAGTCGTTGGT 61.990 55.000 0.00 0.00 0.00 3.67
96 97 1.228124 TTTGGCCCTCAGTCGTTGG 60.228 57.895 0.00 0.00 0.00 3.77
97 98 1.237285 CCTTTGGCCCTCAGTCGTTG 61.237 60.000 0.00 0.00 0.00 4.10
98 99 1.073199 CCTTTGGCCCTCAGTCGTT 59.927 57.895 0.00 0.00 0.00 3.85
99 100 2.750350 CCTTTGGCCCTCAGTCGT 59.250 61.111 0.00 0.00 0.00 4.34
100 101 2.045926 CCCTTTGGCCCTCAGTCG 60.046 66.667 0.00 0.00 0.00 4.18
101 102 1.002011 GTCCCTTTGGCCCTCAGTC 60.002 63.158 0.00 0.00 0.00 3.51
102 103 2.539081 GGTCCCTTTGGCCCTCAGT 61.539 63.158 0.00 0.00 0.00 3.41
103 104 2.356667 GGTCCCTTTGGCCCTCAG 59.643 66.667 0.00 0.00 0.00 3.35
104 105 3.264845 GGGTCCCTTTGGCCCTCA 61.265 66.667 0.00 0.00 41.93 3.86
105 106 4.426313 CGGGTCCCTTTGGCCCTC 62.426 72.222 6.29 0.00 42.60 4.30
109 110 2.380285 TATCCCGGGTCCCTTTGGC 61.380 63.158 22.86 0.00 0.00 4.52
110 111 1.530283 GTATCCCGGGTCCCTTTGG 59.470 63.158 22.86 3.96 0.00 3.28
111 112 1.145377 CGTATCCCGGGTCCCTTTG 59.855 63.158 22.86 1.16 0.00 2.77
112 113 3.638132 CGTATCCCGGGTCCCTTT 58.362 61.111 22.86 2.24 0.00 3.11
121 122 0.460311 ACTTCTTCTGCCGTATCCCG 59.540 55.000 0.00 0.00 0.00 5.14
122 123 2.280628 CAACTTCTTCTGCCGTATCCC 58.719 52.381 0.00 0.00 0.00 3.85
123 124 2.673368 CACAACTTCTTCTGCCGTATCC 59.327 50.000 0.00 0.00 0.00 2.59
124 125 2.094417 GCACAACTTCTTCTGCCGTATC 59.906 50.000 0.00 0.00 0.00 2.24
125 126 2.076863 GCACAACTTCTTCTGCCGTAT 58.923 47.619 0.00 0.00 0.00 3.06
126 127 1.508632 GCACAACTTCTTCTGCCGTA 58.491 50.000 0.00 0.00 0.00 4.02
127 128 1.498865 CGCACAACTTCTTCTGCCGT 61.499 55.000 0.00 0.00 0.00 5.68
128 129 1.205064 CGCACAACTTCTTCTGCCG 59.795 57.895 0.00 0.00 0.00 5.69
129 130 0.235926 GTCGCACAACTTCTTCTGCC 59.764 55.000 0.00 0.00 0.00 4.85
130 131 0.937304 TGTCGCACAACTTCTTCTGC 59.063 50.000 0.00 0.00 0.00 4.26
145 146 1.128611 CTTCTCGCAAGCGTTGTCG 59.871 57.895 14.57 0.00 40.74 4.35
146 147 1.415374 TACTTCTCGCAAGCGTTGTC 58.585 50.000 14.57 0.00 40.74 3.18
147 148 1.860676 TTACTTCTCGCAAGCGTTGT 58.139 45.000 14.57 10.89 40.74 3.32
148 149 2.941891 TTTACTTCTCGCAAGCGTTG 57.058 45.000 14.57 8.83 40.74 4.10
149 150 3.064207 TCATTTACTTCTCGCAAGCGTT 58.936 40.909 14.57 0.00 40.74 4.84
150 151 2.412089 GTCATTTACTTCTCGCAAGCGT 59.588 45.455 14.57 0.00 40.74 5.07
151 152 2.411748 TGTCATTTACTTCTCGCAAGCG 59.588 45.455 8.36 8.36 41.35 4.68
152 153 3.424962 GGTGTCATTTACTTCTCGCAAGC 60.425 47.826 0.00 0.00 37.18 4.01
153 154 3.125316 GGGTGTCATTTACTTCTCGCAAG 59.875 47.826 0.00 0.00 0.00 4.01
154 155 3.071479 GGGTGTCATTTACTTCTCGCAA 58.929 45.455 0.00 0.00 0.00 4.85
155 156 2.301870 AGGGTGTCATTTACTTCTCGCA 59.698 45.455 0.00 0.00 0.00 5.10
156 157 2.930682 GAGGGTGTCATTTACTTCTCGC 59.069 50.000 0.00 0.00 0.00 5.03
157 158 3.179830 CGAGGGTGTCATTTACTTCTCG 58.820 50.000 0.00 0.00 36.44 4.04
158 159 3.522553 CCGAGGGTGTCATTTACTTCTC 58.477 50.000 0.00 0.00 0.00 2.87
159 160 2.236395 CCCGAGGGTGTCATTTACTTCT 59.764 50.000 0.00 0.00 0.00 2.85
160 161 2.629051 CCCGAGGGTGTCATTTACTTC 58.371 52.381 0.00 0.00 0.00 3.01
161 162 2.781681 CCCGAGGGTGTCATTTACTT 57.218 50.000 0.00 0.00 0.00 2.24
173 174 2.438434 GATGTTGGCACCCGAGGG 60.438 66.667 6.63 6.63 42.03 4.30
174 175 2.040544 GTGATGTTGGCACCCGAGG 61.041 63.158 0.00 0.00 0.00 4.63
175 176 1.003355 AGTGATGTTGGCACCCGAG 60.003 57.895 0.00 0.00 36.95 4.63
176 177 1.302431 CAGTGATGTTGGCACCCGA 60.302 57.895 0.00 0.00 36.95 5.14
177 178 2.334946 CCAGTGATGTTGGCACCCG 61.335 63.158 0.00 0.00 36.95 5.28
178 179 3.685435 CCAGTGATGTTGGCACCC 58.315 61.111 0.00 0.00 36.95 4.61
183 184 0.677731 ATCGGTGCCAGTGATGTTGG 60.678 55.000 0.00 0.00 38.78 3.77
184 185 0.729116 GATCGGTGCCAGTGATGTTG 59.271 55.000 0.00 0.00 0.00 3.33
185 186 0.392998 GGATCGGTGCCAGTGATGTT 60.393 55.000 0.00 0.00 0.00 2.71
186 187 1.221840 GGATCGGTGCCAGTGATGT 59.778 57.895 0.00 0.00 0.00 3.06
187 188 1.524621 GGGATCGGTGCCAGTGATG 60.525 63.158 0.00 0.00 35.58 3.07
188 189 2.746375 GGGGATCGGTGCCAGTGAT 61.746 63.158 9.05 0.00 37.63 3.06
189 190 3.399181 GGGGATCGGTGCCAGTGA 61.399 66.667 9.05 0.00 37.63 3.41
190 191 4.838152 CGGGGATCGGTGCCAGTG 62.838 72.222 9.05 0.00 37.63 3.66
192 193 4.530857 GACGGGGATCGGTGCCAG 62.531 72.222 9.05 6.70 44.45 4.85
199 200 1.079681 TTTGTTCCGACGGGGATCG 60.080 57.895 15.25 0.00 46.62 3.69
200 201 1.366854 GCTTTGTTCCGACGGGGATC 61.367 60.000 15.25 3.01 46.62 3.36
201 202 1.376812 GCTTTGTTCCGACGGGGAT 60.377 57.895 15.25 0.00 46.62 3.85
202 203 2.031465 GCTTTGTTCCGACGGGGA 59.969 61.111 15.25 0.00 45.40 4.81
203 204 1.170290 AAAGCTTTGTTCCGACGGGG 61.170 55.000 15.25 0.00 37.02 5.73
204 205 0.237498 GAAAGCTTTGTTCCGACGGG 59.763 55.000 18.30 0.00 0.00 5.28
205 206 0.941542 TGAAAGCTTTGTTCCGACGG 59.058 50.000 18.30 7.84 0.00 4.79
206 207 1.333791 GGTGAAAGCTTTGTTCCGACG 60.334 52.381 18.30 0.00 0.00 5.12
207 208 1.947456 AGGTGAAAGCTTTGTTCCGAC 59.053 47.619 18.30 0.19 46.63 4.79
208 209 2.341846 AGGTGAAAGCTTTGTTCCGA 57.658 45.000 18.30 0.00 46.63 4.55
209 210 3.399330 TCTAGGTGAAAGCTTTGTTCCG 58.601 45.455 18.30 4.78 46.63 4.30
210 211 3.189495 GCTCTAGGTGAAAGCTTTGTTCC 59.811 47.826 18.30 14.94 46.63 3.62
211 212 4.068599 AGCTCTAGGTGAAAGCTTTGTTC 58.931 43.478 18.30 2.63 46.63 3.18
212 213 4.068599 GAGCTCTAGGTGAAAGCTTTGTT 58.931 43.478 18.30 0.00 46.63 2.83
213 214 3.558109 GGAGCTCTAGGTGAAAGCTTTGT 60.558 47.826 18.30 0.00 46.63 2.83
214 215 3.006247 GGAGCTCTAGGTGAAAGCTTTG 58.994 50.000 18.30 0.50 46.63 2.77
215 216 2.639839 TGGAGCTCTAGGTGAAAGCTTT 59.360 45.455 12.53 12.53 46.63 3.51
216 217 2.027653 GTGGAGCTCTAGGTGAAAGCTT 60.028 50.000 14.64 0.00 46.63 3.74
218 219 1.276421 TGTGGAGCTCTAGGTGAAAGC 59.724 52.381 14.64 0.00 36.27 3.51
219 220 2.564947 AGTGTGGAGCTCTAGGTGAAAG 59.435 50.000 14.64 0.00 0.00 2.62
220 221 2.609747 AGTGTGGAGCTCTAGGTGAAA 58.390 47.619 14.64 0.00 0.00 2.69
221 222 2.310779 AGTGTGGAGCTCTAGGTGAA 57.689 50.000 14.64 0.00 0.00 3.18
222 223 2.620886 GGTAGTGTGGAGCTCTAGGTGA 60.621 54.545 14.64 0.00 0.00 4.02
223 224 1.751924 GGTAGTGTGGAGCTCTAGGTG 59.248 57.143 14.64 0.00 0.00 4.00
224 225 1.682394 CGGTAGTGTGGAGCTCTAGGT 60.682 57.143 14.64 0.00 0.00 3.08
225 226 1.025812 CGGTAGTGTGGAGCTCTAGG 58.974 60.000 14.64 0.00 0.00 3.02
226 227 0.382515 GCGGTAGTGTGGAGCTCTAG 59.617 60.000 14.64 0.00 0.00 2.43
227 228 1.035932 GGCGGTAGTGTGGAGCTCTA 61.036 60.000 14.64 4.15 0.00 2.43
228 229 2.352032 GGCGGTAGTGTGGAGCTCT 61.352 63.158 14.64 0.00 0.00 4.09
229 230 2.184579 GGCGGTAGTGTGGAGCTC 59.815 66.667 4.71 4.71 0.00 4.09
230 231 2.603473 TGGCGGTAGTGTGGAGCT 60.603 61.111 0.00 0.00 0.00 4.09
231 232 2.125512 CTGGCGGTAGTGTGGAGC 60.126 66.667 0.00 0.00 0.00 4.70
232 233 2.125512 GCTGGCGGTAGTGTGGAG 60.126 66.667 0.00 0.00 0.00 3.86
233 234 2.603473 AGCTGGCGGTAGTGTGGA 60.603 61.111 0.00 0.00 0.00 4.02
234 235 2.125512 GAGCTGGCGGTAGTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
235 236 0.807667 GATGAGCTGGCGGTAGTGTG 60.808 60.000 0.00 0.00 0.00 3.82
236 237 1.517832 GATGAGCTGGCGGTAGTGT 59.482 57.895 0.00 0.00 0.00 3.55
237 238 1.589993 CGATGAGCTGGCGGTAGTG 60.590 63.158 0.00 0.00 0.00 2.74
238 239 0.750546 TACGATGAGCTGGCGGTAGT 60.751 55.000 0.00 0.00 0.00 2.73
239 240 0.317938 GTACGATGAGCTGGCGGTAG 60.318 60.000 0.00 0.00 0.00 3.18
240 241 1.731433 GGTACGATGAGCTGGCGGTA 61.731 60.000 0.00 0.00 0.00 4.02
241 242 2.494918 GTACGATGAGCTGGCGGT 59.505 61.111 0.00 0.00 0.00 5.68
242 243 2.279517 GGTACGATGAGCTGGCGG 60.280 66.667 0.00 0.00 0.00 6.13
243 244 2.279517 GGGTACGATGAGCTGGCG 60.280 66.667 0.00 0.00 0.00 5.69
244 245 2.109181 GGGGTACGATGAGCTGGC 59.891 66.667 0.00 0.00 0.00 4.85
256 257 4.511246 ATCGACTCCCGCGGGGTA 62.511 66.667 42.36 24.86 44.74 3.69
263 264 4.271816 CAGCCGGATCGACTCCCG 62.272 72.222 5.05 13.78 41.49 5.14
264 265 4.593864 GCAGCCGGATCGACTCCC 62.594 72.222 5.05 0.35 41.49 4.30
265 266 3.838271 TGCAGCCGGATCGACTCC 61.838 66.667 5.05 0.00 41.07 3.85
266 267 2.583593 GTGCAGCCGGATCGACTC 60.584 66.667 5.05 0.00 0.00 3.36
267 268 4.148825 GGTGCAGCCGGATCGACT 62.149 66.667 5.05 0.00 0.00 4.18
268 269 4.451150 TGGTGCAGCCGGATCGAC 62.451 66.667 14.36 0.00 41.21 4.20
269 270 4.147449 CTGGTGCAGCCGGATCGA 62.147 66.667 14.36 0.00 46.81 3.59
280 281 2.795110 TTTTGGTGGCTGCTGGTGC 61.795 57.895 0.00 0.00 40.20 5.01
284 285 1.474077 GATAGGTTTTGGTGGCTGCTG 59.526 52.381 0.00 0.00 0.00 4.41
299 300 4.535294 AGATCATTGGTGGATGGAGATAGG 59.465 45.833 0.00 0.00 0.00 2.57
305 306 4.040047 ACACTAGATCATTGGTGGATGGA 58.960 43.478 0.00 0.00 34.42 3.41
313 314 8.498054 AGTTCACAATAACACTAGATCATTGG 57.502 34.615 0.00 0.00 32.20 3.16
323 324 6.018994 GTCGTTGAAGAGTTCACAATAACACT 60.019 38.462 0.00 0.00 39.87 3.55
330 331 4.693283 AGATGTCGTTGAAGAGTTCACAA 58.307 39.130 0.00 0.00 39.87 3.33
331 332 4.322080 AGATGTCGTTGAAGAGTTCACA 57.678 40.909 0.00 0.00 39.87 3.58
343 344 6.542370 TCTTTTTCCTTCTTGAAGATGTCGTT 59.458 34.615 11.53 0.00 0.00 3.85
350 351 4.887655 GGGTGTCTTTTTCCTTCTTGAAGA 59.112 41.667 11.53 0.00 0.00 2.87
354 355 4.262164 CCATGGGTGTCTTTTTCCTTCTTG 60.262 45.833 2.85 0.00 0.00 3.02
357 358 3.230976 ACCATGGGTGTCTTTTTCCTTC 58.769 45.455 18.09 0.00 32.98 3.46
367 371 0.108138 CGAAGGAGACCATGGGTGTC 60.108 60.000 18.09 9.15 44.05 3.67
380 384 3.384532 GGTACCCGTGGCGAAGGA 61.385 66.667 0.00 0.00 0.00 3.36
408 413 1.899142 TGGGAAATGTAAGCTTTGGCC 59.101 47.619 3.20 0.00 39.73 5.36
419 424 3.763557 ATCCATGGTCTTGGGAAATGT 57.236 42.857 12.58 0.00 37.37 2.71
420 425 4.467082 TGAAATCCATGGTCTTGGGAAATG 59.533 41.667 12.58 0.00 37.37 2.32
421 426 4.686891 TGAAATCCATGGTCTTGGGAAAT 58.313 39.130 12.58 0.00 37.37 2.17
424 429 2.025037 CCTGAAATCCATGGTCTTGGGA 60.025 50.000 12.58 0.00 37.37 4.37
425 430 2.381911 CCTGAAATCCATGGTCTTGGG 58.618 52.381 12.58 4.95 37.37 4.12
428 433 1.683011 CGGCCTGAAATCCATGGTCTT 60.683 52.381 12.58 6.20 0.00 3.01
430 435 0.394352 ACGGCCTGAAATCCATGGTC 60.394 55.000 12.58 2.39 0.00 4.02
431 436 0.394352 GACGGCCTGAAATCCATGGT 60.394 55.000 12.58 0.00 0.00 3.55
432 437 0.107017 AGACGGCCTGAAATCCATGG 60.107 55.000 4.97 4.97 0.00 3.66
487 493 7.504924 ACAAGCTAACAAGCAGTAAATACAA 57.495 32.000 0.00 0.00 37.25 2.41
491 497 7.230712 AGGTAAACAAGCTAACAAGCAGTAAAT 59.769 33.333 0.00 0.00 37.25 1.40
498 504 4.036380 ACACAGGTAAACAAGCTAACAAGC 59.964 41.667 0.00 0.00 33.59 4.01
503 509 2.882137 GGCACACAGGTAAACAAGCTAA 59.118 45.455 0.00 0.00 33.59 3.09
515 521 1.741327 AAGCAAGCAAGGCACACAGG 61.741 55.000 0.00 0.00 0.00 4.00
516 522 0.596600 CAAGCAAGCAAGGCACACAG 60.597 55.000 0.00 0.00 0.00 3.66
542 548 5.314923 TGTAATCGACTGTAACACCCTAC 57.685 43.478 0.00 0.00 0.00 3.18
594 600 7.977853 AGTGGCTGATGTCAATTTTATCAATTC 59.022 33.333 0.00 0.00 31.11 2.17
597 603 6.433716 TCAGTGGCTGATGTCAATTTTATCAA 59.566 34.615 0.00 0.00 35.39 2.57
610 616 1.067565 ACGTGTAGTCAGTGGCTGATG 60.068 52.381 7.72 1.89 42.73 3.07
613 619 0.032130 ACACGTGTAGTCAGTGGCTG 59.968 55.000 21.98 0.00 39.95 4.85
616 622 5.066117 ACTCATATACACGTGTAGTCAGTGG 59.934 44.000 30.15 18.75 39.95 4.00
617 623 6.120378 ACTCATATACACGTGTAGTCAGTG 57.880 41.667 30.15 21.99 41.28 3.66
618 624 6.373495 TCAACTCATATACACGTGTAGTCAGT 59.627 38.462 30.15 23.85 33.52 3.41
619 625 6.782150 TCAACTCATATACACGTGTAGTCAG 58.218 40.000 30.15 23.31 33.52 3.51
620 626 6.746745 TCAACTCATATACACGTGTAGTCA 57.253 37.500 30.15 19.19 33.52 3.41
621 627 8.371053 GTTTTCAACTCATATACACGTGTAGTC 58.629 37.037 30.15 9.95 33.52 2.59
622 628 8.086522 AGTTTTCAACTCATATACACGTGTAGT 58.913 33.333 30.15 22.04 37.02 2.73
623 629 8.462143 AGTTTTCAACTCATATACACGTGTAG 57.538 34.615 30.15 21.41 37.02 2.74
624 630 8.705134 CAAGTTTTCAACTCATATACACGTGTA 58.295 33.333 29.15 29.15 41.91 2.90
625 631 7.439955 TCAAGTTTTCAACTCATATACACGTGT 59.560 33.333 26.52 26.52 41.91 4.49
626 632 7.792925 TCAAGTTTTCAACTCATATACACGTG 58.207 34.615 15.48 15.48 41.91 4.49
627 633 7.956420 TCAAGTTTTCAACTCATATACACGT 57.044 32.000 0.00 0.00 41.91 4.49
628 634 9.825972 ATTTCAAGTTTTCAACTCATATACACG 57.174 29.630 0.00 0.00 41.91 4.49
666 672 3.243704 GCAATGTGTGACTAGGCCAAAAA 60.244 43.478 5.01 0.00 0.00 1.94
695 701 6.127479 ACCACAAAAGTTGTTGAGCAATTCTA 60.127 34.615 0.00 0.00 43.23 2.10
699 705 4.470334 ACCACAAAAGTTGTTGAGCAAT 57.530 36.364 0.00 0.00 43.23 3.56
785 807 7.648112 GTCTTGCATTATGAACGTAGATAGACA 59.352 37.037 0.00 0.00 0.00 3.41
787 809 6.856426 CGTCTTGCATTATGAACGTAGATAGA 59.144 38.462 0.00 0.00 0.00 1.98
788 810 6.637254 ACGTCTTGCATTATGAACGTAGATAG 59.363 38.462 11.55 0.00 0.00 2.08
789 811 6.500910 ACGTCTTGCATTATGAACGTAGATA 58.499 36.000 11.55 0.00 0.00 1.98
790 812 5.348986 ACGTCTTGCATTATGAACGTAGAT 58.651 37.500 11.55 0.00 0.00 1.98
791 813 4.740268 ACGTCTTGCATTATGAACGTAGA 58.260 39.130 11.55 0.00 0.00 2.59
792 814 5.450376 AACGTCTTGCATTATGAACGTAG 57.550 39.130 12.89 0.00 32.14 3.51
793 815 5.849357 AAACGTCTTGCATTATGAACGTA 57.151 34.783 12.89 0.00 32.14 3.57
794 816 4.742438 AAACGTCTTGCATTATGAACGT 57.258 36.364 0.00 3.29 0.00 3.99
826 848 9.186837 TCGAGTCTAAAACAATATACTTCCTCT 57.813 33.333 0.00 0.00 0.00 3.69
827 849 9.798994 TTCGAGTCTAAAACAATATACTTCCTC 57.201 33.333 0.00 0.00 0.00 3.71
835 857 9.924650 AACACTAGTTCGAGTCTAAAACAATAT 57.075 29.630 0.00 0.00 30.46 1.28
836 858 9.754382 AAACACTAGTTCGAGTCTAAAACAATA 57.246 29.630 0.00 0.00 36.84 1.90
838 860 7.464977 GCAAACACTAGTTCGAGTCTAAAACAA 60.465 37.037 0.00 0.00 36.84 2.83
839 861 6.019318 GCAAACACTAGTTCGAGTCTAAAACA 60.019 38.462 0.00 0.00 36.84 2.83
840 862 6.019318 TGCAAACACTAGTTCGAGTCTAAAAC 60.019 38.462 0.00 0.00 36.84 2.43
841 863 6.019318 GTGCAAACACTAGTTCGAGTCTAAAA 60.019 38.462 0.00 0.00 43.85 1.52
842 864 5.461078 GTGCAAACACTAGTTCGAGTCTAAA 59.539 40.000 0.00 0.00 43.85 1.85
843 865 4.980434 GTGCAAACACTAGTTCGAGTCTAA 59.020 41.667 0.00 0.00 43.85 2.10
844 866 4.543692 GTGCAAACACTAGTTCGAGTCTA 58.456 43.478 0.00 0.00 43.85 2.59
851 1006 2.349532 GCCTTCGTGCAAACACTAGTTC 60.350 50.000 0.00 0.00 45.10 3.01
853 1008 1.226746 GCCTTCGTGCAAACACTAGT 58.773 50.000 0.00 0.00 45.10 2.57
866 1021 2.297315 TCATATCTGCACTAGGCCTTCG 59.703 50.000 12.58 5.19 43.89 3.79
920 1086 3.153919 TGTTGTTGGAAATAGGGAGCAC 58.846 45.455 0.00 0.00 0.00 4.40
953 1119 1.385743 GAACACGTATGACTGCGACAC 59.614 52.381 0.00 0.00 34.31 3.67
1003 1169 2.584418 CGGGAGACGCAGCATCTG 60.584 66.667 0.00 0.00 34.82 2.90
1081 1247 1.224075 CTCGGCTGCTTGGATATGTG 58.776 55.000 0.00 0.00 0.00 3.21
1082 1248 0.833287 ACTCGGCTGCTTGGATATGT 59.167 50.000 0.00 0.00 0.00 2.29
1083 1249 1.069823 AGACTCGGCTGCTTGGATATG 59.930 52.381 0.00 0.00 0.00 1.78
1097 1263 2.554462 TGTGTTCTTCTCTGGAGACTCG 59.446 50.000 0.00 0.00 37.14 4.18
1147 1315 1.738350 CAGCATCAGCAGGAACAGAAG 59.262 52.381 0.00 0.00 45.49 2.85
1245 1413 1.614996 ATGAAACGGTGATGTTGCCA 58.385 45.000 0.00 0.00 31.10 4.92
1332 1509 2.683933 GGGAAGAGGCCGGAGTCA 60.684 66.667 5.05 0.00 0.00 3.41
1343 1520 2.035155 TGAGACGCGGAGGGAAGA 59.965 61.111 12.47 0.00 46.37 2.87
1623 3084 1.148273 GGGCATGGCATACCTCGAA 59.852 57.895 22.06 0.00 36.63 3.71
2016 3492 4.492160 GCGCATCCACGGTCGAGA 62.492 66.667 0.30 0.00 0.00 4.04
2023 3508 2.125713 TGTACCTGCGCATCCACG 60.126 61.111 12.24 0.00 0.00 4.94
2059 3591 3.515502 AGAGCACAACAGCTATACTCCAA 59.484 43.478 0.00 0.00 46.75 3.53
2061 3595 3.810310 AGAGCACAACAGCTATACTCC 57.190 47.619 0.00 0.00 46.75 3.85
2062 3596 7.653647 AGTAATAGAGCACAACAGCTATACTC 58.346 38.462 0.00 0.00 46.75 2.59
2088 3622 6.942576 AGGGAAAATTAATATGGATCGGAGTG 59.057 38.462 0.00 0.00 0.00 3.51
2090 3624 7.168219 TCAGGGAAAATTAATATGGATCGGAG 58.832 38.462 0.00 0.00 0.00 4.63
2091 3625 7.085476 TCAGGGAAAATTAATATGGATCGGA 57.915 36.000 0.00 0.00 0.00 4.55
2127 3674 9.688091 GATGTAGTCCTTCCTCTGATATACATA 57.312 37.037 0.00 0.00 31.72 2.29
2130 3677 8.107095 AGAGATGTAGTCCTTCCTCTGATATAC 58.893 40.741 0.00 0.00 0.00 1.47
2134 3681 5.402054 AGAGATGTAGTCCTTCCTCTGAT 57.598 43.478 0.00 0.00 0.00 2.90
2136 3683 5.690865 AGTAGAGATGTAGTCCTTCCTCTG 58.309 45.833 0.00 0.00 0.00 3.35
2137 3684 5.987019 AGTAGAGATGTAGTCCTTCCTCT 57.013 43.478 0.00 0.00 0.00 3.69
2138 3685 7.093684 ACAAAAGTAGAGATGTAGTCCTTCCTC 60.094 40.741 0.00 0.00 0.00 3.71
2139 3686 6.726764 ACAAAAGTAGAGATGTAGTCCTTCCT 59.273 38.462 0.00 0.00 0.00 3.36
2140 3687 6.937392 ACAAAAGTAGAGATGTAGTCCTTCC 58.063 40.000 0.00 0.00 0.00 3.46
2141 3688 7.757624 CAGACAAAAGTAGAGATGTAGTCCTTC 59.242 40.741 0.00 0.00 0.00 3.46
2143 3690 6.948886 TCAGACAAAAGTAGAGATGTAGTCCT 59.051 38.462 0.00 0.00 0.00 3.85
2144 3691 7.030768 GTCAGACAAAAGTAGAGATGTAGTCC 58.969 42.308 0.00 0.00 0.00 3.85
2145 3692 7.030768 GGTCAGACAAAAGTAGAGATGTAGTC 58.969 42.308 2.17 0.00 0.00 2.59
2147 3694 6.925211 TGGTCAGACAAAAGTAGAGATGTAG 58.075 40.000 2.17 0.00 0.00 2.74
2148 3695 6.911250 TGGTCAGACAAAAGTAGAGATGTA 57.089 37.500 2.17 0.00 0.00 2.29
2149 3696 5.808366 TGGTCAGACAAAAGTAGAGATGT 57.192 39.130 2.17 0.00 0.00 3.06
2151 3698 7.453393 TCATTTGGTCAGACAAAAGTAGAGAT 58.547 34.615 9.08 0.00 42.91 2.75
2152 3699 6.826668 TCATTTGGTCAGACAAAAGTAGAGA 58.173 36.000 9.08 0.20 42.91 3.10
2153 3700 7.173907 ACATCATTTGGTCAGACAAAAGTAGAG 59.826 37.037 9.08 1.39 42.91 2.43
2154 3701 6.998074 ACATCATTTGGTCAGACAAAAGTAGA 59.002 34.615 9.08 7.21 42.91 2.59
2155 3702 7.206981 ACATCATTTGGTCAGACAAAAGTAG 57.793 36.000 9.08 2.41 42.91 2.57
2156 3703 7.284261 TCAACATCATTTGGTCAGACAAAAGTA 59.716 33.333 9.08 0.35 42.91 2.24
2158 3705 6.506147 TCAACATCATTTGGTCAGACAAAAG 58.494 36.000 9.08 2.29 42.91 2.27
2346 4176 1.549170 GACGGTTTTCAGAGCTAGGGA 59.451 52.381 0.00 0.00 0.00 4.20
2349 4179 2.349297 ACGACGGTTTTCAGAGCTAG 57.651 50.000 0.00 0.00 0.00 3.42
2367 4197 3.630769 TCGATGGATCAGTGTGTACCTAC 59.369 47.826 0.00 0.00 0.00 3.18
2463 4400 8.620416 TCCTAAATATGACATTGCATACACAAC 58.380 33.333 0.00 0.00 33.88 3.32
2544 4483 5.567037 TTGATCAGTTTCCTCTTCTGGAA 57.433 39.130 0.00 0.00 43.63 3.53
2573 4512 2.890808 TGTGCTCGAAGAAGTTCTGT 57.109 45.000 6.06 0.00 34.09 3.41
2615 4554 1.414181 CCTCTATGGGAACGCATCTGT 59.586 52.381 7.58 0.00 0.00 3.41
2628 4567 1.592669 CTTCGGCGGCACCTCTATG 60.593 63.158 10.53 0.00 35.61 2.23
2653 4592 3.134458 GAGAATATCTTGAACCCGCTGG 58.866 50.000 0.00 0.00 37.80 4.85
2679 4618 2.079925 GGTGGCTTTCACTAGCTCTTG 58.920 52.381 0.00 0.00 45.38 3.02
2687 4626 2.143876 AGTTGTTGGTGGCTTTCACT 57.856 45.000 0.00 0.00 45.38 3.41
2689 4628 1.403679 CGAAGTTGTTGGTGGCTTTCA 59.596 47.619 0.00 0.00 0.00 2.69
2735 4674 1.806496 TGTAGACTATGCCATGGCCT 58.194 50.000 33.44 26.14 41.09 5.19
2792 4731 6.098124 CAGACTCCTCCATCATCTTAGACTTT 59.902 42.308 0.00 0.00 0.00 2.66
2816 4755 2.034685 CCTCGCGAACTCCTTGATATCA 59.965 50.000 11.33 0.00 0.00 2.15
2876 4815 2.253758 GCAACCGAGCAGCTTGACA 61.254 57.895 11.73 0.00 0.00 3.58
2904 4843 1.050988 ACCAGCATCGGCACCTCTAT 61.051 55.000 0.00 0.00 44.61 1.98
2906 4845 2.129555 AAACCAGCATCGGCACCTCT 62.130 55.000 0.00 0.00 44.61 3.69
3263 5205 2.351706 AAAGCACGACCCCAAAACTA 57.648 45.000 0.00 0.00 0.00 2.24
3284 5227 1.633774 TCTTTCCGGTGAGAAGCTCT 58.366 50.000 0.00 0.00 0.00 4.09
3326 5272 0.707616 ACACTAGGCTCCTGTCCTCT 59.292 55.000 0.00 0.00 35.21 3.69
3341 5287 4.554163 GCTACGAAGCGTGACACT 57.446 55.556 3.68 0.00 41.39 3.55
3401 5347 1.636003 GGTCCCATTTCCTTCCTCACT 59.364 52.381 0.00 0.00 0.00 3.41
3419 5365 1.674057 CTCTTCCAGTGCTTCGGGT 59.326 57.895 0.00 0.00 33.18 5.28
3425 5371 2.062070 GGTGACCTCTTCCAGTGCT 58.938 57.895 0.00 0.00 0.00 4.40
3542 5488 3.636231 CCAGCTTGACCCCACGGA 61.636 66.667 0.00 0.00 0.00 4.69
3565 5511 0.471617 CTGCCCTTCCTCCGAATCAT 59.528 55.000 0.00 0.00 0.00 2.45
3695 5650 7.308782 AGATATACCTTTGCGAAAGAACAAG 57.691 36.000 9.37 0.00 41.02 3.16
3814 5782 9.078753 GTTCTACACTCTTCTCTAATTTAGTGC 57.921 37.037 3.45 0.00 38.27 4.40
3889 5858 7.027161 CAGAAGAAACAAGAAAAGGAACGAAA 58.973 34.615 0.00 0.00 0.00 3.46
3985 5962 8.893727 GTCTGTCTACCATATTGCTAACAAAAT 58.106 33.333 0.00 0.00 39.77 1.82
4000 5978 0.965866 CAGAGGCCGTCTGTCTACCA 60.966 60.000 18.74 0.00 46.89 3.25
4032 6010 1.535462 GTTACCATCACATATGCGCCC 59.465 52.381 4.18 0.00 0.00 6.13
4066 6044 2.342179 GGCAGTAGAAGCAGTGTCTTC 58.658 52.381 15.38 15.38 42.01 2.87
4067 6045 1.002544 GGGCAGTAGAAGCAGTGTCTT 59.997 52.381 0.00 0.00 0.00 3.01
4098 6080 7.345691 TGTATCACCAGAAATTATCACCACAT 58.654 34.615 0.00 0.00 0.00 3.21
4100 6082 7.624360 TTGTATCACCAGAAATTATCACCAC 57.376 36.000 0.00 0.00 0.00 4.16
4102 6084 9.573133 CTTTTTGTATCACCAGAAATTATCACC 57.427 33.333 0.00 0.00 0.00 4.02
4104 6086 8.748412 CCCTTTTTGTATCACCAGAAATTATCA 58.252 33.333 0.00 0.00 0.00 2.15
4106 6088 8.664669 ACCCTTTTTGTATCACCAGAAATTAT 57.335 30.769 0.00 0.00 0.00 1.28
4107 6089 7.726291 TGACCCTTTTTGTATCACCAGAAATTA 59.274 33.333 0.00 0.00 0.00 1.40
4108 6090 6.553100 TGACCCTTTTTGTATCACCAGAAATT 59.447 34.615 0.00 0.00 0.00 1.82
4119 6136 6.601332 TCTCTTTCTGTGACCCTTTTTGTAT 58.399 36.000 0.00 0.00 0.00 2.29
4152 6169 2.747855 CTGGGCTCGGGCAAACTC 60.748 66.667 10.74 0.00 40.87 3.01
4187 7097 2.041485 TCCCAAGTCTGGAATTGATGCA 59.959 45.455 11.57 0.00 46.92 3.96
4190 7100 4.476113 TCAGATCCCAAGTCTGGAATTGAT 59.524 41.667 11.57 0.00 46.92 2.57
4201 7260 3.753272 CGTGAATTGTTCAGATCCCAAGT 59.247 43.478 0.00 0.00 41.01 3.16
4204 7263 2.083774 GCGTGAATTGTTCAGATCCCA 58.916 47.619 0.00 0.00 41.01 4.37
4262 7604 4.250464 GTCAGATCCATTGTTTCGTACCA 58.750 43.478 0.00 0.00 0.00 3.25
4274 7698 2.746375 GGGCCCACGTCAGATCCAT 61.746 63.158 19.95 0.00 0.00 3.41
4329 7753 2.202479 GCTCGGTTGAAATGCCGC 60.202 61.111 0.00 0.00 46.79 6.53
4383 7868 2.364448 GAGGAAGAGAGGGGCGGT 60.364 66.667 0.00 0.00 0.00 5.68
4422 8080 2.164422 CAGAACGAGCACCACTAGATGA 59.836 50.000 0.00 0.00 0.00 2.92
4555 8424 7.576750 TTGTTAGCTTTCTTCTACACATACG 57.423 36.000 0.00 0.00 0.00 3.06
4642 8566 3.181451 TGGATCTGAGTGCTCAAAACTGT 60.181 43.478 3.36 0.00 39.39 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.