Multiple sequence alignment - TraesCS6B01G413800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G413800 chr6B 100.000 2511 0 0 1 2511 687106268 687103758 0.000000e+00 4638
1 TraesCS6B01G413800 chr6B 91.406 512 36 7 132 641 687139807 687139302 0.000000e+00 695
2 TraesCS6B01G413800 chr6B 91.818 440 27 6 123 557 687139134 687138699 2.760000e-169 604
3 TraesCS6B01G413800 chr6B 83.139 599 52 17 754 1334 687138699 687138132 3.730000e-138 501
4 TraesCS6B01G413800 chr6B 92.568 296 16 4 123 413 687302257 687302551 1.070000e-113 420
5 TraesCS6B01G413800 chr6B 88.923 325 20 8 885 1204 687302742 687303055 1.090000e-103 387
6 TraesCS6B01G413800 chr6B 81.735 438 56 13 1404 1823 687303388 687303819 6.650000e-91 344
7 TraesCS6B01G413800 chr6B 77.317 410 46 26 1964 2331 687262861 687263265 5.480000e-47 198
8 TraesCS6B01G413800 chr6B 85.030 167 13 10 1176 1333 687303060 687303223 2.590000e-35 159
9 TraesCS6B01G413800 chr6B 89.147 129 10 3 429 557 687302507 687302631 9.300000e-35 158
10 TraesCS6B01G413800 chr6A 88.266 1747 106 46 826 2511 598070354 598068646 0.000000e+00 1999
11 TraesCS6B01G413800 chr6A 88.674 362 19 11 169 528 598187443 598187784 2.990000e-114 422
12 TraesCS6B01G413800 chr6A 89.803 304 22 7 198 495 598070853 598070553 5.070000e-102 381
13 TraesCS6B01G413800 chr6A 75.541 785 107 42 1405 2147 598154239 598153498 8.720000e-80 307
14 TraesCS6B01G413800 chr6A 76.636 428 55 26 905 1299 598072067 598071652 7.090000e-46 195
15 TraesCS6B01G413800 chr6A 91.667 108 5 3 363 469 598070623 598070519 2.010000e-31 147
16 TraesCS6B01G413800 chr6D 86.364 1518 113 38 1070 2510 452477320 452475820 0.000000e+00 1570
17 TraesCS6B01G413800 chr6D 89.370 254 17 5 732 981 452477586 452477339 6.740000e-81 311
18 TraesCS6B01G413800 chr6D 92.857 182 9 2 542 723 406391536 406391359 6.890000e-66 261
19 TraesCS6B01G413800 chr6D 90.909 187 17 0 231 417 452478243 452478057 4.150000e-63 252
20 TraesCS6B01G413800 chr6D 78.883 412 48 20 903 1293 452582466 452582859 2.500000e-60 243
21 TraesCS6B01G413800 chr6D 89.326 178 3 9 372 545 452583376 452583541 2.530000e-50 209
22 TraesCS6B01G413800 chr1B 86.667 330 21 16 203 520 651290606 651290924 6.650000e-91 344
23 TraesCS6B01G413800 chr1B 92.896 183 10 1 549 731 476874914 476874735 1.920000e-66 263
24 TraesCS6B01G413800 chr2B 95.858 169 7 0 555 723 149837137 149836969 8.850000e-70 274
25 TraesCS6B01G413800 chr4D 93.956 182 8 1 546 727 404108752 404108574 3.180000e-69 272
26 TraesCS6B01G413800 chr4D 93.923 181 5 4 552 731 93338209 93338034 4.120000e-68 268
27 TraesCS6B01G413800 chr1D 94.318 176 7 1 549 724 238940209 238940381 1.480000e-67 267
28 TraesCS6B01G413800 chr1D 85.441 261 27 7 163 413 469820502 469820761 6.890000e-66 261
29 TraesCS6B01G413800 chr5D 92.896 183 9 2 548 730 388330734 388330556 1.920000e-66 263
30 TraesCS6B01G413800 chr7D 92.021 188 12 1 542 729 50710229 50710413 6.890000e-66 261
31 TraesCS6B01G413800 chr4B 95.035 141 7 0 303 443 661748746 661748886 3.250000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G413800 chr6B 687103758 687106268 2510 True 4638.0 4638 100.000000 1 2511 1 chr6B.!!$R1 2510
1 TraesCS6B01G413800 chr6B 687138132 687139807 1675 True 600.0 695 88.787667 123 1334 3 chr6B.!!$R2 1211
2 TraesCS6B01G413800 chr6B 687302257 687303819 1562 False 293.6 420 87.480600 123 1823 5 chr6B.!!$F2 1700
3 TraesCS6B01G413800 chr6A 598068646 598072067 3421 True 680.5 1999 86.593000 198 2511 4 chr6A.!!$R2 2313
4 TraesCS6B01G413800 chr6A 598153498 598154239 741 True 307.0 307 75.541000 1405 2147 1 chr6A.!!$R1 742
5 TraesCS6B01G413800 chr6D 452475820 452478243 2423 True 711.0 1570 88.881000 231 2510 3 chr6D.!!$R2 2279
6 TraesCS6B01G413800 chr6D 452582466 452583541 1075 False 226.0 243 84.104500 372 1293 2 chr6D.!!$F1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 2328 0.102663 GGCCTAACCTACGAGTCTGC 59.897 60.0 0.0 0.0 34.51 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 3414 1.004862 TGGGGGCAATGTTTGTCGATA 59.995 47.619 0.0 0.0 35.72 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.915349 GAAAGATGAGCAGAGATGGCA 58.085 47.619 0.00 0.00 0.00 4.92
23 24 1.348366 AGATGAGCAGAGATGGCATCC 59.652 52.381 23.33 14.71 36.82 3.51
24 25 1.071857 GATGAGCAGAGATGGCATCCA 59.928 52.381 23.33 13.35 38.19 3.41
25 26 0.913924 TGAGCAGAGATGGCATCCAA 59.086 50.000 23.33 0.00 36.95 3.53
26 27 1.134189 TGAGCAGAGATGGCATCCAAG 60.134 52.381 23.33 13.97 36.95 3.61
27 28 0.183014 AGCAGAGATGGCATCCAAGG 59.817 55.000 23.33 11.95 36.95 3.61
28 29 0.106819 GCAGAGATGGCATCCAAGGT 60.107 55.000 23.33 4.79 36.95 3.50
29 30 1.684248 GCAGAGATGGCATCCAAGGTT 60.684 52.381 23.33 4.00 36.95 3.50
45 46 2.117206 TTGGATGGGTGGTGGCAC 59.883 61.111 9.70 9.70 0.00 5.01
47 48 4.344865 GGATGGGTGGTGGCACGT 62.345 66.667 12.17 0.00 0.00 4.49
48 49 3.055719 GATGGGTGGTGGCACGTG 61.056 66.667 12.28 12.28 0.00 4.49
50 51 3.126703 ATGGGTGGTGGCACGTGAA 62.127 57.895 22.23 2.99 0.00 3.18
51 52 2.978010 GGGTGGTGGCACGTGAAG 60.978 66.667 22.23 0.00 0.00 3.02
56 57 4.012895 GTGGCACGTGAAGCGGTG 62.013 66.667 22.23 0.00 46.52 4.94
61 62 2.515057 ACGTGAAGCGGTGCCAAA 60.515 55.556 0.00 0.00 46.52 3.28
63 64 2.335011 GTGAAGCGGTGCCAAACC 59.665 61.111 0.00 0.00 46.60 3.27
71 72 2.941210 GGTGCCAAACCTTCGATCA 58.059 52.632 0.00 0.00 46.55 2.92
72 73 1.243902 GGTGCCAAACCTTCGATCAA 58.756 50.000 0.00 0.00 46.55 2.57
73 74 1.611491 GGTGCCAAACCTTCGATCAAA 59.389 47.619 0.00 0.00 46.55 2.69
75 76 3.491792 GGTGCCAAACCTTCGATCAAAAA 60.492 43.478 0.00 0.00 46.55 1.94
101 102 3.436700 AAAGAAAAACCGTGAAGCTGG 57.563 42.857 0.00 0.00 0.00 4.85
104 105 0.755327 AAAAACCGTGAAGCTGGGCT 60.755 50.000 0.00 0.00 42.56 5.19
105 106 0.109723 AAAACCGTGAAGCTGGGCTA 59.890 50.000 0.00 0.00 38.25 3.93
107 108 0.605589 AACCGTGAAGCTGGGCTAAC 60.606 55.000 0.00 0.00 38.25 2.34
108 109 1.296715 CCGTGAAGCTGGGCTAACT 59.703 57.895 0.00 0.00 38.25 2.24
109 110 0.741221 CCGTGAAGCTGGGCTAACTC 60.741 60.000 0.00 0.00 38.25 3.01
113 114 1.612442 AAGCTGGGCTAACTCGGGA 60.612 57.895 0.00 0.00 38.25 5.14
116 117 1.749033 CTGGGCTAACTCGGGATCC 59.251 63.158 1.92 1.92 0.00 3.36
117 118 1.002403 TGGGCTAACTCGGGATCCA 59.998 57.895 15.23 0.00 0.00 3.41
118 119 0.399949 TGGGCTAACTCGGGATCCAT 60.400 55.000 15.23 0.00 0.00 3.41
266 1285 2.927477 CGGCTCGCTTACAAATCAGTTA 59.073 45.455 0.00 0.00 0.00 2.24
270 1289 3.318886 TCGCTTACAAATCAGTTACGCA 58.681 40.909 0.00 0.00 0.00 5.24
271 1290 3.122278 TCGCTTACAAATCAGTTACGCAC 59.878 43.478 0.00 0.00 0.00 5.34
389 1408 0.736325 AGACGTTGAGGCATACACGC 60.736 55.000 1.99 0.00 0.00 5.34
393 1412 0.301687 GTTGAGGCATACACGCATCG 59.698 55.000 0.00 0.00 45.42 3.84
422 1441 0.110733 GCCGAGTCTATACGAGCGAC 60.111 60.000 0.00 0.00 0.00 5.19
434 1453 0.832030 CGAGCGACGTTTCATAGACG 59.168 55.000 0.00 0.00 45.46 4.18
443 1462 2.930040 CGTTTCATAGACGTTGAGGCAT 59.070 45.455 0.00 0.00 35.88 4.40
444 1463 4.109766 CGTTTCATAGACGTTGAGGCATA 58.890 43.478 0.00 0.00 35.88 3.14
448 1467 2.554806 TAGACGTTGAGGCATACACG 57.445 50.000 0.00 0.61 0.00 4.49
451 1470 1.014044 ACGTTGAGGCATACACGCAG 61.014 55.000 1.99 0.00 0.00 5.18
452 1471 1.425428 GTTGAGGCATACACGCAGC 59.575 57.895 0.00 0.00 0.00 5.25
453 1472 2.100031 TTGAGGCATACACGCAGCG 61.100 57.895 14.82 14.82 0.00 5.18
454 1473 3.929948 GAGGCATACACGCAGCGC 61.930 66.667 16.61 0.00 0.00 5.92
455 1474 4.758251 AGGCATACACGCAGCGCA 62.758 61.111 16.61 0.00 0.00 6.09
456 1475 3.798650 GGCATACACGCAGCGCAA 61.799 61.111 16.61 0.00 0.00 4.85
457 1476 2.175566 GCATACACGCAGCGCAAA 59.824 55.556 16.61 0.00 0.00 3.68
458 1477 1.226379 GCATACACGCAGCGCAAAT 60.226 52.632 16.61 2.26 0.00 2.32
459 1478 1.465991 GCATACACGCAGCGCAAATG 61.466 55.000 16.61 16.11 0.00 2.32
460 1479 1.226379 ATACACGCAGCGCAAATGC 60.226 52.632 16.61 10.53 40.35 3.56
470 1489 4.465413 GCAAATGCGAGCCAAGTC 57.535 55.556 0.00 0.00 0.00 3.01
471 1490 1.878775 GCAAATGCGAGCCAAGTCT 59.121 52.632 0.00 0.00 0.00 3.24
472 1491 1.086696 GCAAATGCGAGCCAAGTCTA 58.913 50.000 0.00 0.00 0.00 2.59
473 1492 1.468520 GCAAATGCGAGCCAAGTCTAA 59.531 47.619 0.00 0.00 0.00 2.10
474 1493 2.098117 GCAAATGCGAGCCAAGTCTAAT 59.902 45.455 0.00 0.00 0.00 1.73
475 1494 3.688272 CAAATGCGAGCCAAGTCTAATG 58.312 45.455 0.00 0.00 0.00 1.90
478 1497 2.826428 TGCGAGCCAAGTCTAATGATC 58.174 47.619 0.00 0.00 0.00 2.92
481 1500 2.139118 GAGCCAAGTCTAATGATCCGC 58.861 52.381 0.00 0.00 0.00 5.54
482 1501 1.765314 AGCCAAGTCTAATGATCCGCT 59.235 47.619 0.00 0.00 0.00 5.52
484 1503 2.760374 CCAAGTCTAATGATCCGCTCC 58.240 52.381 0.00 0.00 0.00 4.70
488 1507 1.067212 GTCTAATGATCCGCTCCGTGT 59.933 52.381 0.00 0.00 0.00 4.49
489 1508 2.292569 GTCTAATGATCCGCTCCGTGTA 59.707 50.000 0.00 0.00 0.00 2.90
491 1510 1.399714 AATGATCCGCTCCGTGTAGA 58.600 50.000 0.00 0.00 0.00 2.59
492 1511 0.669077 ATGATCCGCTCCGTGTAGAC 59.331 55.000 0.00 0.00 0.00 2.59
493 1512 1.009900 GATCCGCTCCGTGTAGACG 60.010 63.158 5.25 5.25 45.67 4.18
494 1513 1.712977 GATCCGCTCCGTGTAGACGT 61.713 60.000 11.79 0.00 44.54 4.34
495 1514 0.462581 ATCCGCTCCGTGTAGACGTA 60.463 55.000 11.79 0.00 44.54 3.57
496 1515 0.462581 TCCGCTCCGTGTAGACGTAT 60.463 55.000 11.79 0.00 44.54 3.06
497 1516 1.202521 TCCGCTCCGTGTAGACGTATA 60.203 52.381 11.79 0.00 44.54 1.47
498 1517 1.070309 CCGCTCCGTGTAGACGTATAC 60.070 57.143 13.34 13.34 44.54 1.47
499 1518 1.396440 CGCTCCGTGTAGACGTATACG 60.396 57.143 23.24 23.24 44.54 3.06
505 1524 1.933853 GTGTAGACGTATACGGTCGGT 59.066 52.381 27.62 7.63 44.95 4.69
506 1525 2.033662 GTGTAGACGTATACGGTCGGTC 60.034 54.545 27.62 15.96 44.95 4.79
508 1527 2.029838 AGACGTATACGGTCGGTCTT 57.970 50.000 27.62 5.35 44.95 3.01
509 1528 2.359900 AGACGTATACGGTCGGTCTTT 58.640 47.619 27.62 4.61 44.95 2.52
510 1529 2.749621 AGACGTATACGGTCGGTCTTTT 59.250 45.455 27.62 3.85 44.95 2.27
511 1530 3.191371 AGACGTATACGGTCGGTCTTTTT 59.809 43.478 27.62 3.32 44.95 1.94
513 1532 3.244976 CGTATACGGTCGGTCTTTTTGT 58.755 45.455 17.61 0.00 35.37 2.83
514 1533 3.301642 CGTATACGGTCGGTCTTTTTGTC 59.698 47.826 17.61 0.00 35.37 3.18
515 1534 3.672767 ATACGGTCGGTCTTTTTGTCT 57.327 42.857 0.00 0.00 0.00 3.41
516 1535 4.789012 ATACGGTCGGTCTTTTTGTCTA 57.211 40.909 0.00 0.00 0.00 2.59
517 1536 3.672767 ACGGTCGGTCTTTTTGTCTAT 57.327 42.857 0.00 0.00 0.00 1.98
518 1537 3.999046 ACGGTCGGTCTTTTTGTCTATT 58.001 40.909 0.00 0.00 0.00 1.73
519 1538 4.383173 ACGGTCGGTCTTTTTGTCTATTT 58.617 39.130 0.00 0.00 0.00 1.40
520 1539 4.818005 ACGGTCGGTCTTTTTGTCTATTTT 59.182 37.500 0.00 0.00 0.00 1.82
521 1540 5.049886 ACGGTCGGTCTTTTTGTCTATTTTC 60.050 40.000 0.00 0.00 0.00 2.29
522 1541 5.616204 CGGTCGGTCTTTTTGTCTATTTTCC 60.616 44.000 0.00 0.00 0.00 3.13
523 1542 5.239963 GGTCGGTCTTTTTGTCTATTTTCCA 59.760 40.000 0.00 0.00 0.00 3.53
524 1543 6.072119 GGTCGGTCTTTTTGTCTATTTTCCAT 60.072 38.462 0.00 0.00 0.00 3.41
526 1545 6.488683 TCGGTCTTTTTGTCTATTTTCCATGT 59.511 34.615 0.00 0.00 0.00 3.21
528 1547 7.521423 CGGTCTTTTTGTCTATTTTCCATGTGA 60.521 37.037 0.00 0.00 0.00 3.58
529 1548 8.306761 GGTCTTTTTGTCTATTTTCCATGTGAT 58.693 33.333 0.00 0.00 0.00 3.06
530 1549 9.696917 GTCTTTTTGTCTATTTTCCATGTGATT 57.303 29.630 0.00 0.00 0.00 2.57
566 1585 8.514330 TTTTTATTAAATGATACTCCCTGCGT 57.486 30.769 0.00 0.00 0.00 5.24
567 1586 8.514330 TTTTATTAAATGATACTCCCTGCGTT 57.486 30.769 0.00 0.00 0.00 4.84
568 1587 7.724305 TTATTAAATGATACTCCCTGCGTTC 57.276 36.000 0.00 0.00 0.00 3.95
570 1589 1.794714 ATGATACTCCCTGCGTTCCT 58.205 50.000 0.00 0.00 0.00 3.36
571 1590 2.447408 TGATACTCCCTGCGTTCCTA 57.553 50.000 0.00 0.00 0.00 2.94
573 1592 3.101437 TGATACTCCCTGCGTTCCTAAA 58.899 45.455 0.00 0.00 0.00 1.85
574 1593 3.709653 TGATACTCCCTGCGTTCCTAAAT 59.290 43.478 0.00 0.00 0.00 1.40
575 1594 4.897076 TGATACTCCCTGCGTTCCTAAATA 59.103 41.667 0.00 0.00 0.00 1.40
577 1596 3.105283 ACTCCCTGCGTTCCTAAATACT 58.895 45.455 0.00 0.00 0.00 2.12
579 1598 4.900054 ACTCCCTGCGTTCCTAAATACTAT 59.100 41.667 0.00 0.00 0.00 2.12
581 1600 6.126854 ACTCCCTGCGTTCCTAAATACTATTT 60.127 38.462 0.00 0.00 0.00 1.40
582 1601 7.070322 ACTCCCTGCGTTCCTAAATACTATTTA 59.930 37.037 2.02 2.02 0.00 1.40
583 1602 7.970102 TCCCTGCGTTCCTAAATACTATTTAT 58.030 34.615 2.34 0.00 0.00 1.40
584 1603 8.092687 TCCCTGCGTTCCTAAATACTATTTATC 58.907 37.037 2.34 0.00 0.00 1.75
585 1604 8.095169 CCCTGCGTTCCTAAATACTATTTATCT 58.905 37.037 2.34 0.00 0.00 1.98
586 1605 9.490379 CCTGCGTTCCTAAATACTATTTATCTT 57.510 33.333 2.34 0.00 0.00 2.40
663 1682 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
664 1683 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
666 1685 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
669 1688 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
671 1690 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
672 1691 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
676 1695 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
678 1697 3.777465 TTGCTCCGTATGTAGTCACTC 57.223 47.619 0.00 0.00 0.00 3.51
679 1698 1.669265 TGCTCCGTATGTAGTCACTCG 59.331 52.381 0.00 0.00 0.00 4.18
681 1700 2.097142 GCTCCGTATGTAGTCACTCGTT 59.903 50.000 0.00 0.00 0.00 3.85
683 1702 3.337358 TCCGTATGTAGTCACTCGTTGA 58.663 45.455 0.00 0.00 0.00 3.18
685 1704 4.216042 TCCGTATGTAGTCACTCGTTGAAA 59.784 41.667 0.00 0.00 35.39 2.69
687 1706 4.322804 CGTATGTAGTCACTCGTTGAAACC 59.677 45.833 0.00 0.00 35.39 3.27
688 1707 4.602340 ATGTAGTCACTCGTTGAAACCT 57.398 40.909 0.00 0.00 35.39 3.50
691 1710 4.823442 TGTAGTCACTCGTTGAAACCTCTA 59.177 41.667 0.00 0.00 35.39 2.43
692 1711 4.506886 AGTCACTCGTTGAAACCTCTAG 57.493 45.455 0.00 0.00 35.39 2.43
693 1712 4.142790 AGTCACTCGTTGAAACCTCTAGA 58.857 43.478 0.00 0.00 35.39 2.43
695 1714 5.068723 AGTCACTCGTTGAAACCTCTAGAAA 59.931 40.000 0.00 0.00 35.39 2.52
697 1716 5.301045 TCACTCGTTGAAACCTCTAGAAAGA 59.699 40.000 0.00 0.00 0.00 2.52
699 1718 5.068723 ACTCGTTGAAACCTCTAGAAAGACA 59.931 40.000 0.00 0.00 0.00 3.41
700 1719 5.909477 TCGTTGAAACCTCTAGAAAGACAA 58.091 37.500 0.00 0.00 0.00 3.18
701 1720 6.342906 TCGTTGAAACCTCTAGAAAGACAAA 58.657 36.000 0.00 0.00 0.00 2.83
703 1722 8.145767 TCGTTGAAACCTCTAGAAAGACAAATA 58.854 33.333 0.00 0.00 0.00 1.40
704 1723 8.936864 CGTTGAAACCTCTAGAAAGACAAATAT 58.063 33.333 0.00 0.00 0.00 1.28
715 1734 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
716 1735 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
718 1737 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
719 1738 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
722 1741 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
723 1742 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
724 1743 4.957684 ATTTAGGAACGGAGGGAGTATG 57.042 45.455 0.00 0.00 0.00 2.39
725 1744 3.675348 TTAGGAACGGAGGGAGTATGA 57.325 47.619 0.00 0.00 0.00 2.15
726 1745 2.777459 AGGAACGGAGGGAGTATGAT 57.223 50.000 0.00 0.00 0.00 2.45
727 1746 3.047695 AGGAACGGAGGGAGTATGATT 57.952 47.619 0.00 0.00 0.00 2.57
728 1747 3.385115 AGGAACGGAGGGAGTATGATTT 58.615 45.455 0.00 0.00 0.00 2.17
729 1748 4.553678 AGGAACGGAGGGAGTATGATTTA 58.446 43.478 0.00 0.00 0.00 1.40
730 1749 4.966805 AGGAACGGAGGGAGTATGATTTAA 59.033 41.667 0.00 0.00 0.00 1.52
731 1750 5.427481 AGGAACGGAGGGAGTATGATTTAAA 59.573 40.000 0.00 0.00 0.00 1.52
732 1751 6.101296 AGGAACGGAGGGAGTATGATTTAAAT 59.899 38.462 0.00 0.00 0.00 1.40
733 1752 6.771267 GGAACGGAGGGAGTATGATTTAAATT 59.229 38.462 1.43 0.00 0.00 1.82
734 1753 7.041303 GGAACGGAGGGAGTATGATTTAAATTC 60.041 40.741 1.43 0.00 0.00 2.17
735 1754 7.138054 ACGGAGGGAGTATGATTTAAATTCT 57.862 36.000 1.43 0.00 0.00 2.40
736 1755 7.574607 ACGGAGGGAGTATGATTTAAATTCTT 58.425 34.615 1.43 0.00 0.00 2.52
738 1757 8.903820 CGGAGGGAGTATGATTTAAATTCTTTT 58.096 33.333 1.43 0.00 0.00 2.27
752 1771 8.568732 TTAAATTCTTTTCAAACTAGCAACGG 57.431 30.769 0.00 0.00 0.00 4.44
753 1772 6.385649 AATTCTTTTCAAACTAGCAACGGA 57.614 33.333 0.00 0.00 0.00 4.69
754 1773 5.821516 TTCTTTTCAAACTAGCAACGGAA 57.178 34.783 0.00 0.00 0.00 4.30
755 1774 5.821516 TCTTTTCAAACTAGCAACGGAAA 57.178 34.783 0.00 0.00 0.00 3.13
756 1775 6.385649 TCTTTTCAAACTAGCAACGGAAAT 57.614 33.333 0.00 0.00 0.00 2.17
757 1776 6.205784 TCTTTTCAAACTAGCAACGGAAATG 58.794 36.000 0.00 0.00 0.00 2.32
759 1778 2.881513 TCAAACTAGCAACGGAAATGCA 59.118 40.909 0.00 0.00 46.22 3.96
761 1780 4.047822 CAAACTAGCAACGGAAATGCAAA 58.952 39.130 0.00 0.00 46.22 3.68
762 1781 4.519540 AACTAGCAACGGAAATGCAAAT 57.480 36.364 0.00 0.00 46.22 2.32
763 1782 4.519540 ACTAGCAACGGAAATGCAAATT 57.480 36.364 0.00 0.00 46.22 1.82
764 1783 4.485163 ACTAGCAACGGAAATGCAAATTC 58.515 39.130 6.98 6.98 46.22 2.17
766 1785 3.726607 AGCAACGGAAATGCAAATTCAA 58.273 36.364 15.10 0.00 46.22 2.69
767 1786 3.742369 AGCAACGGAAATGCAAATTCAAG 59.258 39.130 15.10 11.27 46.22 3.02
768 1787 3.665060 GCAACGGAAATGCAAATTCAAGC 60.665 43.478 15.10 9.91 43.29 4.01
769 1788 3.383620 ACGGAAATGCAAATTCAAGCA 57.616 38.095 15.10 3.15 45.92 3.91
770 1789 3.059166 ACGGAAATGCAAATTCAAGCAC 58.941 40.909 15.10 0.33 44.49 4.40
771 1790 3.058450 CGGAAATGCAAATTCAAGCACA 58.942 40.909 15.10 0.00 44.49 4.57
772 1791 3.680937 CGGAAATGCAAATTCAAGCACAT 59.319 39.130 15.10 0.00 44.49 3.21
775 1794 5.390145 GGAAATGCAAATTCAAGCACATCAC 60.390 40.000 15.10 0.00 44.49 3.06
776 1795 4.530710 ATGCAAATTCAAGCACATCACT 57.469 36.364 0.00 0.00 44.49 3.41
777 1796 5.648178 ATGCAAATTCAAGCACATCACTA 57.352 34.783 0.00 0.00 44.49 2.74
782 1801 6.493116 CAAATTCAAGCACATCACTAGATCC 58.507 40.000 0.00 0.00 30.20 3.36
784 1803 4.824479 TCAAGCACATCACTAGATCCAA 57.176 40.909 0.00 0.00 30.20 3.53
787 1806 5.046376 TCAAGCACATCACTAGATCCAAGAA 60.046 40.000 0.00 0.00 30.20 2.52
788 1807 5.426689 AGCACATCACTAGATCCAAGAAA 57.573 39.130 0.00 0.00 30.20 2.52
789 1808 5.809001 AGCACATCACTAGATCCAAGAAAA 58.191 37.500 0.00 0.00 30.20 2.29
790 1809 6.240894 AGCACATCACTAGATCCAAGAAAAA 58.759 36.000 0.00 0.00 30.20 1.94
791 1810 6.888632 AGCACATCACTAGATCCAAGAAAAAT 59.111 34.615 0.00 0.00 30.20 1.82
792 1811 6.971184 GCACATCACTAGATCCAAGAAAAATG 59.029 38.462 0.00 0.00 30.20 2.32
793 1812 7.362401 GCACATCACTAGATCCAAGAAAAATGT 60.362 37.037 0.00 0.00 30.20 2.71
795 1814 9.388506 ACATCACTAGATCCAAGAAAAATGTAG 57.611 33.333 0.00 0.00 30.20 2.74
796 1815 9.605275 CATCACTAGATCCAAGAAAAATGTAGA 57.395 33.333 0.00 0.00 30.20 2.59
798 1817 9.658799 TCACTAGATCCAAGAAAAATGTAGAAG 57.341 33.333 0.00 0.00 0.00 2.85
801 1820 7.388460 AGATCCAAGAAAAATGTAGAAGCAG 57.612 36.000 0.00 0.00 0.00 4.24
802 1821 6.944862 AGATCCAAGAAAAATGTAGAAGCAGT 59.055 34.615 0.00 0.00 0.00 4.40
803 1822 6.959639 TCCAAGAAAAATGTAGAAGCAGTT 57.040 33.333 0.00 0.00 0.00 3.16
804 1823 6.738114 TCCAAGAAAAATGTAGAAGCAGTTG 58.262 36.000 0.00 0.00 0.00 3.16
805 1824 5.403466 CCAAGAAAAATGTAGAAGCAGTTGC 59.597 40.000 0.00 0.00 42.49 4.17
806 1825 5.772825 AGAAAAATGTAGAAGCAGTTGCA 57.227 34.783 6.90 0.00 45.16 4.08
807 1826 6.147864 AGAAAAATGTAGAAGCAGTTGCAA 57.852 33.333 6.90 0.00 45.16 4.08
809 1828 4.510038 AAATGTAGAAGCAGTTGCAAGG 57.490 40.909 0.00 0.00 45.16 3.61
810 1829 2.638480 TGTAGAAGCAGTTGCAAGGT 57.362 45.000 0.00 0.00 45.16 3.50
811 1830 2.494059 TGTAGAAGCAGTTGCAAGGTC 58.506 47.619 0.00 0.00 45.16 3.85
812 1831 1.807142 GTAGAAGCAGTTGCAAGGTCC 59.193 52.381 0.00 0.00 45.16 4.46
814 1833 0.884704 GAAGCAGTTGCAAGGTCCGA 60.885 55.000 0.00 0.00 45.16 4.55
816 1835 0.250901 AGCAGTTGCAAGGTCCGAAT 60.251 50.000 0.00 0.00 45.16 3.34
817 1836 1.003118 AGCAGTTGCAAGGTCCGAATA 59.997 47.619 0.00 0.00 45.16 1.75
820 1839 3.270027 CAGTTGCAAGGTCCGAATATGA 58.730 45.455 0.00 0.00 0.00 2.15
821 1840 3.879295 CAGTTGCAAGGTCCGAATATGAT 59.121 43.478 0.00 0.00 0.00 2.45
823 1842 3.836365 TGCAAGGTCCGAATATGATGA 57.164 42.857 0.00 0.00 0.00 2.92
824 1843 3.732212 TGCAAGGTCCGAATATGATGAG 58.268 45.455 0.00 0.00 0.00 2.90
828 1847 5.359756 CAAGGTCCGAATATGATGAGAACA 58.640 41.667 0.00 0.00 0.00 3.18
829 1848 5.815233 AGGTCCGAATATGATGAGAACAT 57.185 39.130 0.00 0.00 39.67 2.71
830 1849 6.179906 AGGTCCGAATATGATGAGAACATT 57.820 37.500 0.00 0.00 36.82 2.71
831 1850 6.595682 AGGTCCGAATATGATGAGAACATTT 58.404 36.000 0.00 0.00 36.82 2.32
832 1851 6.484643 AGGTCCGAATATGATGAGAACATTTG 59.515 38.462 0.00 0.00 36.82 2.32
833 1852 6.260936 GGTCCGAATATGATGAGAACATTTGT 59.739 38.462 0.00 0.00 36.82 2.83
834 1853 7.201732 GGTCCGAATATGATGAGAACATTTGTT 60.202 37.037 0.00 0.00 41.64 2.83
835 1854 8.184192 GTCCGAATATGATGAGAACATTTGTTT 58.816 33.333 0.00 0.00 38.56 2.83
837 1856 7.970061 CCGAATATGATGAGAACATTTGTTTGT 59.030 33.333 0.00 0.00 38.56 2.83
838 1857 8.791605 CGAATATGATGAGAACATTTGTTTGTG 58.208 33.333 0.00 0.00 38.56 3.33
840 1859 8.975410 ATATGATGAGAACATTTGTTTGTGTG 57.025 30.769 0.00 0.00 38.56 3.82
841 1860 6.206395 TGATGAGAACATTTGTTTGTGTGT 57.794 33.333 0.00 0.00 38.56 3.72
842 1861 6.035217 TGATGAGAACATTTGTTTGTGTGTG 58.965 36.000 0.00 0.00 38.56 3.82
844 1863 5.159925 TGAGAACATTTGTTTGTGTGTGTG 58.840 37.500 0.00 0.00 38.56 3.82
845 1864 5.132897 AGAACATTTGTTTGTGTGTGTGT 57.867 34.783 0.00 0.00 38.56 3.72
846 1865 4.922692 AGAACATTTGTTTGTGTGTGTGTG 59.077 37.500 0.00 0.00 38.56 3.82
847 1866 4.250116 ACATTTGTTTGTGTGTGTGTGT 57.750 36.364 0.00 0.00 0.00 3.72
848 1867 3.986572 ACATTTGTTTGTGTGTGTGTGTG 59.013 39.130 0.00 0.00 0.00 3.82
849 1868 3.717400 TTTGTTTGTGTGTGTGTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
850 1869 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
853 1872 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
854 1873 1.598882 TGTGTGTGTGTGTGTGTGTT 58.401 45.000 0.00 0.00 0.00 3.32
855 1874 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
857 1876 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.000 0.00 0.00 0.00 4.12
858 1877 0.962855 TGTGTGTGTGTGTGTTGGGG 60.963 55.000 0.00 0.00 0.00 4.96
859 1878 2.049185 TGTGTGTGTGTGTTGGGGC 61.049 57.895 0.00 0.00 0.00 5.80
860 1879 1.752694 GTGTGTGTGTGTTGGGGCT 60.753 57.895 0.00 0.00 0.00 5.19
861 1880 1.752310 TGTGTGTGTGTTGGGGCTG 60.752 57.895 0.00 0.00 0.00 4.85
863 1882 1.453015 TGTGTGTGTTGGGGCTGAC 60.453 57.895 0.00 0.00 0.00 3.51
864 1883 2.193536 GTGTGTGTTGGGGCTGACC 61.194 63.158 0.00 0.00 39.11 4.02
865 1884 2.382770 TGTGTGTTGGGGCTGACCT 61.383 57.895 0.00 0.00 40.03 3.85
866 1885 1.898574 GTGTGTTGGGGCTGACCTG 60.899 63.158 0.00 0.00 40.03 4.00
868 1887 1.600916 GTGTTGGGGCTGACCTGAC 60.601 63.158 0.00 0.00 40.03 3.51
870 1889 1.150536 GTTGGGGCTGACCTGACAA 59.849 57.895 0.00 0.00 40.03 3.18
871 1890 0.890996 GTTGGGGCTGACCTGACAAG 60.891 60.000 0.00 0.00 40.03 3.16
883 1902 1.548719 CCTGACAAGGTGTACGATGGA 59.451 52.381 0.00 0.00 38.96 3.41
884 1903 2.028476 CCTGACAAGGTGTACGATGGAA 60.028 50.000 0.00 0.00 38.96 3.53
885 1904 3.556213 CCTGACAAGGTGTACGATGGAAA 60.556 47.826 0.00 0.00 38.96 3.13
887 1906 2.740447 GACAAGGTGTACGATGGAAACC 59.260 50.000 0.00 0.00 0.00 3.27
888 1907 2.370849 ACAAGGTGTACGATGGAAACCT 59.629 45.455 0.00 0.00 43.10 3.50
890 1909 1.553704 AGGTGTACGATGGAAACCTCC 59.446 52.381 0.00 0.00 36.51 4.30
892 1911 2.027469 GGTGTACGATGGAAACCTCCTT 60.027 50.000 0.00 0.00 42.94 3.36
893 1912 3.558533 GGTGTACGATGGAAACCTCCTTT 60.559 47.826 0.00 0.00 42.94 3.11
894 1913 3.435671 GTGTACGATGGAAACCTCCTTTG 59.564 47.826 0.00 0.00 42.94 2.77
896 1915 0.447801 CGATGGAAACCTCCTTTGCG 59.552 55.000 0.00 0.00 42.94 4.85
897 1916 0.811281 GATGGAAACCTCCTTTGCGG 59.189 55.000 0.00 0.00 42.94 5.69
898 1917 1.250840 ATGGAAACCTCCTTTGCGGC 61.251 55.000 0.00 0.00 42.94 6.53
899 1918 2.561373 GAAACCTCCTTTGCGGCG 59.439 61.111 0.51 0.51 0.00 6.46
900 1919 3.610791 GAAACCTCCTTTGCGGCGC 62.611 63.158 27.44 27.44 0.00 6.53
901 1920 4.643387 AACCTCCTTTGCGGCGCT 62.643 61.111 33.26 6.83 0.00 5.92
902 1921 2.741486 AAACCTCCTTTGCGGCGCTA 62.741 55.000 33.26 23.86 0.00 4.26
903 1922 3.195698 CCTCCTTTGCGGCGCTAC 61.196 66.667 33.26 4.49 0.00 3.58
904 1923 2.434185 CTCCTTTGCGGCGCTACA 60.434 61.111 33.26 14.22 0.00 2.74
905 1924 2.031314 TCCTTTGCGGCGCTACAA 59.969 55.556 33.26 20.49 0.00 2.41
906 1925 1.970917 CTCCTTTGCGGCGCTACAAG 61.971 60.000 33.26 27.30 0.00 3.16
929 2282 6.234177 AGATACCGATTCCTCCATTCATTTC 58.766 40.000 0.00 0.00 0.00 2.17
973 2328 0.102663 GGCCTAACCTACGAGTCTGC 59.897 60.000 0.00 0.00 34.51 4.26
974 2329 0.815734 GCCTAACCTACGAGTCTGCA 59.184 55.000 0.00 0.00 0.00 4.41
976 2331 2.621998 GCCTAACCTACGAGTCTGCATA 59.378 50.000 0.00 0.00 0.00 3.14
977 2332 3.304794 GCCTAACCTACGAGTCTGCATAG 60.305 52.174 0.00 0.00 0.00 2.23
978 2333 3.884091 CCTAACCTACGAGTCTGCATAGT 59.116 47.826 0.00 0.00 0.00 2.12
979 2334 5.061853 CCTAACCTACGAGTCTGCATAGTA 58.938 45.833 0.00 0.00 0.00 1.82
982 2337 2.226912 CCTACGAGTCTGCATAGTAGGC 59.773 54.545 10.87 0.00 45.08 3.93
983 2338 2.060050 ACGAGTCTGCATAGTAGGCT 57.940 50.000 8.45 0.00 31.67 4.58
989 2344 4.076394 AGTCTGCATAGTAGGCTAGTAGC 58.924 47.826 14.09 14.09 41.46 3.58
1058 2435 2.803670 GCAATGTGCAGCGCAGTG 60.804 61.111 27.86 27.86 44.26 3.66
1059 2436 2.803670 CAATGTGCAGCGCAGTGC 60.804 61.111 22.23 13.10 40.08 4.40
1080 2457 3.741344 GCAGTGTAGACTACTGGTGTTTG 59.259 47.826 13.67 3.60 44.36 2.93
1150 2527 1.512734 GCATCCAAAACAGCGCTCG 60.513 57.895 7.13 6.07 0.00 5.03
1170 2547 2.573869 GCTGTGGCTCTGCTCGTA 59.426 61.111 10.63 0.00 37.88 3.43
1373 2805 9.751542 CTGTAACTTAATACTATGTGCTAGCTT 57.248 33.333 17.23 1.38 0.00 3.74
1427 2949 1.908340 ATCAGGCGAGGAAAGCAGCT 61.908 55.000 0.00 0.00 36.08 4.24
1492 3017 2.949705 GATTCAAGCTCCCGCCCCTC 62.950 65.000 0.00 0.00 36.60 4.30
1536 3066 0.107993 ATCACATCACAGGGTGAGCG 60.108 55.000 5.25 1.80 46.04 5.03
1586 3120 8.783093 CATCACTAGGTCTGTCAACAAATAAAA 58.217 33.333 0.00 0.00 0.00 1.52
1605 3140 1.966451 GTGCCGGAGTGTTCAAGGG 60.966 63.158 5.05 0.00 0.00 3.95
1619 3154 9.209175 GAGTGTTCAAGGGTGCTTTATATATAG 57.791 37.037 0.00 0.00 0.00 1.31
1620 3155 8.714906 AGTGTTCAAGGGTGCTTTATATATAGT 58.285 33.333 2.68 0.00 0.00 2.12
1621 3156 9.338622 GTGTTCAAGGGTGCTTTATATATAGTT 57.661 33.333 2.68 0.00 0.00 2.24
1622 3157 9.555727 TGTTCAAGGGTGCTTTATATATAGTTC 57.444 33.333 2.68 0.00 0.00 3.01
1623 3158 9.555727 GTTCAAGGGTGCTTTATATATAGTTCA 57.444 33.333 2.68 0.00 0.00 3.18
1644 3185 7.502561 AGTTCAATAATAAGTAAGGTGGCATCC 59.497 37.037 0.00 0.00 0.00 3.51
1661 3202 4.320788 GGCATCCATCTGCTATGTTTAAGC 60.321 45.833 0.00 0.00 41.95 3.09
1684 3231 2.574929 ACGATGCCGCCTTCGTTA 59.425 55.556 11.46 0.00 45.85 3.18
1707 3254 3.753272 AGTAACTGTAAGGTTGCAGCATG 59.247 43.478 2.05 0.00 43.52 4.06
1727 3274 5.180868 GCATGAGCTGTATTAATGGGAGAAG 59.819 44.000 0.00 0.00 37.91 2.85
1730 3277 4.950050 AGCTGTATTAATGGGAGAAGACG 58.050 43.478 0.00 0.00 0.00 4.18
1843 3409 0.245266 TTGAATAGGCTCGACGTGCA 59.755 50.000 21.87 4.43 0.00 4.57
1848 3414 1.803334 TAGGCTCGACGTGCATTTTT 58.197 45.000 21.87 5.95 0.00 1.94
1879 3445 2.751837 GCCCCCACACTGCTAAGC 60.752 66.667 0.00 0.00 0.00 3.09
1882 3448 0.678048 CCCCCACACTGCTAAGCTTC 60.678 60.000 0.00 0.00 0.00 3.86
1934 3519 4.618489 CCTATTAAACTCGTAATACCCGCG 59.382 45.833 0.00 0.00 0.00 6.46
1977 3658 8.871629 ATAGGATGGTAATACACAACAAACAA 57.128 30.769 0.00 0.00 0.00 2.83
1995 3677 4.751767 ACAAAACAAGGAAATCCAGCAA 57.248 36.364 1.67 0.00 38.89 3.91
2098 3794 6.611613 TTCAGAGGAACAGAATATGACAGT 57.388 37.500 0.00 0.00 0.00 3.55
2129 3825 6.599244 GTCCATGTTCATTATTCCTGTTCAGA 59.401 38.462 1.00 0.00 0.00 3.27
2130 3826 6.599244 TCCATGTTCATTATTCCTGTTCAGAC 59.401 38.462 1.00 0.00 0.00 3.51
2220 3916 9.612066 TGTGCATTATTTAGACATGTGATTCTA 57.388 29.630 1.15 0.00 0.00 2.10
2280 3977 3.192633 ACAAAAGGTTCCAACAGTCACAC 59.807 43.478 0.00 0.00 0.00 3.82
2285 3982 3.829601 AGGTTCCAACAGTCACACAAAAA 59.170 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.915349 TGCCATCTCTGCTCATCTTTC 58.085 47.619 0.00 0.00 0.00 2.62
4 5 1.071857 TGGATGCCATCTCTGCTCATC 59.928 52.381 4.41 0.00 33.61 2.92
6 7 0.913924 TTGGATGCCATCTCTGCTCA 59.086 50.000 4.41 0.00 31.53 4.26
7 8 1.595466 CTTGGATGCCATCTCTGCTC 58.405 55.000 4.41 0.00 31.53 4.26
8 9 0.183014 CCTTGGATGCCATCTCTGCT 59.817 55.000 4.41 0.00 31.53 4.24
10 11 2.022195 CAACCTTGGATGCCATCTCTG 58.978 52.381 4.41 0.00 31.53 3.35
11 12 2.431954 CAACCTTGGATGCCATCTCT 57.568 50.000 4.41 0.00 31.53 3.10
23 24 0.899717 CCACCACCCATCCAACCTTG 60.900 60.000 0.00 0.00 0.00 3.61
24 25 1.464722 CCACCACCCATCCAACCTT 59.535 57.895 0.00 0.00 0.00 3.50
25 26 3.180282 CCACCACCCATCCAACCT 58.820 61.111 0.00 0.00 0.00 3.50
26 27 2.679996 GCCACCACCCATCCAACC 60.680 66.667 0.00 0.00 0.00 3.77
27 28 2.117206 TGCCACCACCCATCCAAC 59.883 61.111 0.00 0.00 0.00 3.77
28 29 2.117206 GTGCCACCACCCATCCAA 59.883 61.111 0.00 0.00 35.92 3.53
29 30 4.343323 CGTGCCACCACCCATCCA 62.343 66.667 0.00 0.00 38.79 3.41
31 32 3.055719 CACGTGCCACCACCCATC 61.056 66.667 0.82 0.00 38.79 3.51
34 35 2.978010 CTTCACGTGCCACCACCC 60.978 66.667 11.67 0.00 38.79 4.61
35 36 3.660111 GCTTCACGTGCCACCACC 61.660 66.667 11.67 0.00 38.79 4.61
36 37 4.012895 CGCTTCACGTGCCACCAC 62.013 66.667 11.67 0.00 38.62 4.16
45 46 2.051345 GTTTGGCACCGCTTCACG 60.051 61.111 0.00 0.00 43.15 4.35
80 81 3.430236 CCCAGCTTCACGGTTTTTCTTTT 60.430 43.478 0.00 0.00 0.00 2.27
81 82 2.100749 CCCAGCTTCACGGTTTTTCTTT 59.899 45.455 0.00 0.00 0.00 2.52
83 84 1.318576 CCCAGCTTCACGGTTTTTCT 58.681 50.000 0.00 0.00 0.00 2.52
84 85 0.318699 GCCCAGCTTCACGGTTTTTC 60.319 55.000 0.00 0.00 0.00 2.29
86 87 0.109723 TAGCCCAGCTTCACGGTTTT 59.890 50.000 0.00 0.00 40.44 2.43
87 88 0.109723 TTAGCCCAGCTTCACGGTTT 59.890 50.000 0.00 0.00 40.44 3.27
90 91 0.741221 GAGTTAGCCCAGCTTCACGG 60.741 60.000 0.00 0.00 40.44 4.94
92 93 0.741221 CCGAGTTAGCCCAGCTTCAC 60.741 60.000 0.00 0.00 40.44 3.18
94 95 1.153349 CCCGAGTTAGCCCAGCTTC 60.153 63.158 0.00 0.00 40.44 3.86
95 96 0.983378 ATCCCGAGTTAGCCCAGCTT 60.983 55.000 0.00 0.00 40.44 3.74
97 98 1.069935 GATCCCGAGTTAGCCCAGC 59.930 63.158 0.00 0.00 0.00 4.85
98 99 1.048724 TGGATCCCGAGTTAGCCCAG 61.049 60.000 9.90 0.00 0.00 4.45
100 101 0.321996 GATGGATCCCGAGTTAGCCC 59.678 60.000 9.90 0.00 0.00 5.19
101 102 0.321996 GGATGGATCCCGAGTTAGCC 59.678 60.000 9.90 0.00 41.20 3.93
113 114 2.797278 GCTGTCGTCGGGGATGGAT 61.797 63.158 0.00 0.00 0.00 3.41
116 117 2.100631 GTTGCTGTCGTCGGGGATG 61.101 63.158 0.00 0.00 0.00 3.51
117 118 2.264794 GTTGCTGTCGTCGGGGAT 59.735 61.111 0.00 0.00 0.00 3.85
118 119 3.998672 GGTTGCTGTCGTCGGGGA 61.999 66.667 0.00 0.00 0.00 4.81
161 713 2.202610 GCCAGCGGCCGAAAATTC 60.203 61.111 33.48 10.20 44.06 2.17
195 752 1.025041 GCGGCCTAATTAAGCAGCTT 58.975 50.000 19.87 13.46 45.17 3.74
202 759 0.391927 AGTGCACGCGGCCTAATTAA 60.392 50.000 12.47 0.00 43.89 1.40
270 1289 3.937311 GCCAAGAGCAGCCTAATTAAGGT 60.937 47.826 0.00 0.00 44.42 3.50
271 1290 2.620585 GCCAAGAGCAGCCTAATTAAGG 59.379 50.000 0.00 0.00 45.02 2.69
393 1412 0.806102 TAGACTCGGCTCGCATTTGC 60.806 55.000 0.00 0.00 37.78 3.68
422 1441 2.333926 TGCCTCAACGTCTATGAAACG 58.666 47.619 0.00 0.00 45.37 3.60
423 1442 4.868171 TGTATGCCTCAACGTCTATGAAAC 59.132 41.667 0.00 0.00 0.00 2.78
424 1443 4.868171 GTGTATGCCTCAACGTCTATGAAA 59.132 41.667 0.00 0.00 0.00 2.69
425 1444 4.430007 GTGTATGCCTCAACGTCTATGAA 58.570 43.478 0.00 0.00 0.00 2.57
426 1445 3.488553 CGTGTATGCCTCAACGTCTATGA 60.489 47.826 0.00 0.00 0.00 2.15
427 1446 2.789339 CGTGTATGCCTCAACGTCTATG 59.211 50.000 0.00 0.00 0.00 2.23
430 1449 0.736325 GCGTGTATGCCTCAACGTCT 60.736 55.000 0.00 0.00 0.00 4.18
431 1450 1.011968 TGCGTGTATGCCTCAACGTC 61.012 55.000 0.00 0.00 0.00 4.34
433 1452 1.709760 CTGCGTGTATGCCTCAACG 59.290 57.895 0.00 0.00 0.00 4.10
434 1453 1.425428 GCTGCGTGTATGCCTCAAC 59.575 57.895 0.00 0.00 0.00 3.18
435 1454 2.100031 CGCTGCGTGTATGCCTCAA 61.100 57.895 14.93 0.00 0.00 3.02
436 1455 2.509111 CGCTGCGTGTATGCCTCA 60.509 61.111 14.93 0.00 0.00 3.86
437 1456 3.929948 GCGCTGCGTGTATGCCTC 61.930 66.667 24.04 0.00 0.00 4.70
438 1457 4.758251 TGCGCTGCGTGTATGCCT 62.758 61.111 24.04 0.00 0.00 4.75
439 1458 2.597117 ATTTGCGCTGCGTGTATGCC 62.597 55.000 24.04 5.25 0.00 4.40
440 1459 1.226379 ATTTGCGCTGCGTGTATGC 60.226 52.632 24.04 5.94 0.00 3.14
441 1460 1.465991 GCATTTGCGCTGCGTGTATG 61.466 55.000 24.04 21.58 0.00 2.39
443 1462 2.175566 GCATTTGCGCTGCGTGTA 59.824 55.556 24.04 9.12 0.00 2.90
453 1472 1.086696 TAGACTTGGCTCGCATTTGC 58.913 50.000 0.00 0.00 37.78 3.68
454 1473 3.374988 TCATTAGACTTGGCTCGCATTTG 59.625 43.478 0.00 0.00 0.00 2.32
455 1474 3.609853 TCATTAGACTTGGCTCGCATTT 58.390 40.909 0.00 0.00 0.00 2.32
456 1475 3.266510 TCATTAGACTTGGCTCGCATT 57.733 42.857 0.00 0.00 0.00 3.56
457 1476 2.988010 TCATTAGACTTGGCTCGCAT 57.012 45.000 0.00 0.00 0.00 4.73
458 1477 2.483714 GGATCATTAGACTTGGCTCGCA 60.484 50.000 0.00 0.00 0.00 5.10
459 1478 2.139118 GGATCATTAGACTTGGCTCGC 58.861 52.381 0.00 0.00 0.00 5.03
460 1479 2.398498 CGGATCATTAGACTTGGCTCG 58.602 52.381 0.00 0.00 0.00 5.03
461 1480 2.139118 GCGGATCATTAGACTTGGCTC 58.861 52.381 0.00 0.00 0.00 4.70
462 1481 1.765314 AGCGGATCATTAGACTTGGCT 59.235 47.619 0.00 0.00 0.00 4.75
465 1484 2.223829 ACGGAGCGGATCATTAGACTTG 60.224 50.000 0.00 0.00 0.00 3.16
467 1486 1.338337 CACGGAGCGGATCATTAGACT 59.662 52.381 0.00 0.00 0.00 3.24
468 1487 1.067212 ACACGGAGCGGATCATTAGAC 59.933 52.381 0.00 0.00 0.00 2.59
469 1488 1.399714 ACACGGAGCGGATCATTAGA 58.600 50.000 0.00 0.00 0.00 2.10
470 1489 2.552743 TCTACACGGAGCGGATCATTAG 59.447 50.000 0.00 0.00 0.00 1.73
471 1490 2.292569 GTCTACACGGAGCGGATCATTA 59.707 50.000 0.00 0.00 0.00 1.90
472 1491 1.067212 GTCTACACGGAGCGGATCATT 59.933 52.381 0.00 0.00 0.00 2.57
473 1492 0.669077 GTCTACACGGAGCGGATCAT 59.331 55.000 0.00 0.00 0.00 2.45
474 1493 1.712018 CGTCTACACGGAGCGGATCA 61.712 60.000 0.00 0.00 42.73 2.92
475 1494 1.009900 CGTCTACACGGAGCGGATC 60.010 63.158 0.00 0.00 42.73 3.36
488 1507 2.890808 AGACCGACCGTATACGTCTA 57.109 50.000 22.87 0.00 37.74 2.59
489 1508 2.029838 AAGACCGACCGTATACGTCT 57.970 50.000 22.87 15.50 37.74 4.18
491 1510 3.244976 CAAAAAGACCGACCGTATACGT 58.755 45.455 22.87 11.67 37.74 3.57
492 1511 3.244976 ACAAAAAGACCGACCGTATACG 58.755 45.455 18.40 18.40 39.44 3.06
493 1512 4.488879 AGACAAAAAGACCGACCGTATAC 58.511 43.478 0.00 0.00 0.00 1.47
494 1513 4.789012 AGACAAAAAGACCGACCGTATA 57.211 40.909 0.00 0.00 0.00 1.47
495 1514 3.672767 AGACAAAAAGACCGACCGTAT 57.327 42.857 0.00 0.00 0.00 3.06
496 1515 4.789012 ATAGACAAAAAGACCGACCGTA 57.211 40.909 0.00 0.00 0.00 4.02
497 1516 3.672767 ATAGACAAAAAGACCGACCGT 57.327 42.857 0.00 0.00 0.00 4.83
498 1517 5.352643 AAAATAGACAAAAAGACCGACCG 57.647 39.130 0.00 0.00 0.00 4.79
499 1518 5.239963 TGGAAAATAGACAAAAAGACCGACC 59.760 40.000 0.00 0.00 0.00 4.79
500 1519 6.308371 TGGAAAATAGACAAAAAGACCGAC 57.692 37.500 0.00 0.00 0.00 4.79
501 1520 6.488683 ACATGGAAAATAGACAAAAAGACCGA 59.511 34.615 0.00 0.00 0.00 4.69
502 1521 6.582295 CACATGGAAAATAGACAAAAAGACCG 59.418 38.462 0.00 0.00 0.00 4.79
541 1560 8.514330 ACGCAGGGAGTATCATTTAATAAAAA 57.486 30.769 0.00 0.00 36.25 1.94
542 1561 8.514330 AACGCAGGGAGTATCATTTAATAAAA 57.486 30.769 0.00 0.00 36.25 1.52
543 1562 7.227910 GGAACGCAGGGAGTATCATTTAATAAA 59.772 37.037 0.00 0.00 36.25 1.40
544 1563 6.708949 GGAACGCAGGGAGTATCATTTAATAA 59.291 38.462 0.00 0.00 36.25 1.40
546 1565 5.063880 GGAACGCAGGGAGTATCATTTAAT 58.936 41.667 0.00 0.00 36.25 1.40
547 1566 4.163458 AGGAACGCAGGGAGTATCATTTAA 59.837 41.667 0.00 0.00 36.25 1.52
549 1568 2.505819 AGGAACGCAGGGAGTATCATTT 59.494 45.455 0.00 0.00 36.25 2.32
550 1569 2.119495 AGGAACGCAGGGAGTATCATT 58.881 47.619 0.00 0.00 36.25 2.57
552 1571 2.447408 TAGGAACGCAGGGAGTATCA 57.553 50.000 0.00 0.00 36.25 2.15
553 1572 3.814005 TTTAGGAACGCAGGGAGTATC 57.186 47.619 0.00 0.00 0.00 2.24
554 1573 4.900054 AGTATTTAGGAACGCAGGGAGTAT 59.100 41.667 0.00 0.00 0.00 2.12
555 1574 4.284178 AGTATTTAGGAACGCAGGGAGTA 58.716 43.478 0.00 0.00 0.00 2.59
556 1575 3.105283 AGTATTTAGGAACGCAGGGAGT 58.895 45.455 0.00 0.00 0.00 3.85
558 1577 5.881923 AATAGTATTTAGGAACGCAGGGA 57.118 39.130 0.00 0.00 0.00 4.20
559 1578 8.095169 AGATAAATAGTATTTAGGAACGCAGGG 58.905 37.037 17.91 0.00 0.00 4.45
585 1604 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
602 1621 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
641 1660 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
642 1661 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
643 1662 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
645 1664 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
646 1665 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
647 1666 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
649 1668 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
650 1669 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
651 1670 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
654 1673 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
655 1674 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
656 1675 4.491676 GAGTGACTACATACGGAGCAAAA 58.508 43.478 0.00 0.00 0.00 2.44
658 1677 2.096980 CGAGTGACTACATACGGAGCAA 59.903 50.000 0.00 0.00 0.00 3.91
661 1680 3.373130 TCAACGAGTGACTACATACGGAG 59.627 47.826 0.00 0.00 34.15 4.63
663 1682 3.752412 TCAACGAGTGACTACATACGG 57.248 47.619 0.00 0.00 34.15 4.02
664 1683 4.322804 GGTTTCAACGAGTGACTACATACG 59.677 45.833 0.00 0.00 35.39 3.06
666 1685 5.475909 AGAGGTTTCAACGAGTGACTACATA 59.524 40.000 0.00 0.00 35.39 2.29
669 1688 4.240175 AGAGGTTTCAACGAGTGACTAC 57.760 45.455 0.00 0.00 35.39 2.73
671 1690 4.142790 TCTAGAGGTTTCAACGAGTGACT 58.857 43.478 0.00 0.00 35.39 3.41
672 1691 4.500603 TCTAGAGGTTTCAACGAGTGAC 57.499 45.455 0.00 0.00 35.39 3.67
676 1695 5.529791 TGTCTTTCTAGAGGTTTCAACGAG 58.470 41.667 0.00 0.00 0.00 4.18
678 1697 6.598753 TTTGTCTTTCTAGAGGTTTCAACG 57.401 37.500 0.00 0.00 0.00 4.10
688 1707 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
691 1710 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
692 1711 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
693 1712 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
695 1714 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
697 1716 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
699 1718 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
700 1719 6.785963 TCATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
701 1720 6.320518 TCATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
703 1722 4.553678 TCATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
704 1723 3.985127 TCATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
705 1724 3.675348 TCATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
707 1726 2.777459 ATCATACTCCCTCCGTTCCT 57.223 50.000 0.00 0.00 0.00 3.36
708 1727 3.840124 AAATCATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
709 1728 7.715686 AGAATTTAAATCATACTCCCTCCGTTC 59.284 37.037 0.10 0.00 0.00 3.95
710 1729 7.574607 AGAATTTAAATCATACTCCCTCCGTT 58.425 34.615 0.10 0.00 0.00 4.44
711 1730 7.138054 AGAATTTAAATCATACTCCCTCCGT 57.862 36.000 0.10 0.00 0.00 4.69
712 1731 8.451908 AAAGAATTTAAATCATACTCCCTCCG 57.548 34.615 0.10 0.00 35.86 4.63
726 1745 9.026074 CCGTTGCTAGTTTGAAAAGAATTTAAA 57.974 29.630 0.00 0.00 37.28 1.52
727 1746 8.407064 TCCGTTGCTAGTTTGAAAAGAATTTAA 58.593 29.630 0.00 0.00 37.28 1.52
728 1747 7.932335 TCCGTTGCTAGTTTGAAAAGAATTTA 58.068 30.769 0.00 0.00 37.28 1.40
729 1748 6.801575 TCCGTTGCTAGTTTGAAAAGAATTT 58.198 32.000 0.00 0.00 42.41 1.82
730 1749 6.385649 TCCGTTGCTAGTTTGAAAAGAATT 57.614 33.333 0.00 0.00 0.00 2.17
731 1750 6.385649 TTCCGTTGCTAGTTTGAAAAGAAT 57.614 33.333 0.00 0.00 0.00 2.40
732 1751 5.821516 TTCCGTTGCTAGTTTGAAAAGAA 57.178 34.783 0.00 0.00 0.00 2.52
733 1752 5.821516 TTTCCGTTGCTAGTTTGAAAAGA 57.178 34.783 0.00 0.00 0.00 2.52
734 1753 5.107875 GCATTTCCGTTGCTAGTTTGAAAAG 60.108 40.000 0.00 0.00 37.14 2.27
735 1754 4.742659 GCATTTCCGTTGCTAGTTTGAAAA 59.257 37.500 0.00 0.00 37.14 2.29
736 1755 4.202060 TGCATTTCCGTTGCTAGTTTGAAA 60.202 37.500 0.00 0.00 40.77 2.69
738 1757 2.881513 TGCATTTCCGTTGCTAGTTTGA 59.118 40.909 0.00 0.00 40.77 2.69
740 1759 4.314740 TTTGCATTTCCGTTGCTAGTTT 57.685 36.364 0.00 0.00 40.77 2.66
741 1760 4.519540 ATTTGCATTTCCGTTGCTAGTT 57.480 36.364 0.00 0.00 40.77 2.24
742 1761 4.022416 TGAATTTGCATTTCCGTTGCTAGT 60.022 37.500 7.27 0.00 40.77 2.57
743 1762 4.484236 TGAATTTGCATTTCCGTTGCTAG 58.516 39.130 7.27 0.00 40.77 3.42
744 1763 4.511617 TGAATTTGCATTTCCGTTGCTA 57.488 36.364 7.27 0.00 40.77 3.49
745 1764 3.383620 TGAATTTGCATTTCCGTTGCT 57.616 38.095 7.27 0.00 40.77 3.91
746 1765 3.665060 GCTTGAATTTGCATTTCCGTTGC 60.665 43.478 7.27 0.00 40.55 4.17
751 1770 4.691685 TGATGTGCTTGAATTTGCATTTCC 59.308 37.500 7.27 0.00 41.45 3.13
752 1771 5.407387 AGTGATGTGCTTGAATTTGCATTTC 59.593 36.000 0.00 0.00 41.45 2.17
753 1772 5.302360 AGTGATGTGCTTGAATTTGCATTT 58.698 33.333 0.00 0.00 41.45 2.32
754 1773 4.890088 AGTGATGTGCTTGAATTTGCATT 58.110 34.783 0.00 0.00 41.45 3.56
755 1774 4.530710 AGTGATGTGCTTGAATTTGCAT 57.469 36.364 0.00 0.00 41.45 3.96
756 1775 4.761227 TCTAGTGATGTGCTTGAATTTGCA 59.239 37.500 0.00 0.00 36.79 4.08
757 1776 5.300969 TCTAGTGATGTGCTTGAATTTGC 57.699 39.130 0.00 0.00 0.00 3.68
759 1778 6.182627 TGGATCTAGTGATGTGCTTGAATTT 58.817 36.000 0.00 0.00 32.19 1.82
761 1780 5.363562 TGGATCTAGTGATGTGCTTGAAT 57.636 39.130 0.00 0.00 32.19 2.57
762 1781 4.824479 TGGATCTAGTGATGTGCTTGAA 57.176 40.909 0.00 0.00 32.19 2.69
763 1782 4.467438 TCTTGGATCTAGTGATGTGCTTGA 59.533 41.667 0.00 0.00 32.19 3.02
764 1783 4.763073 TCTTGGATCTAGTGATGTGCTTG 58.237 43.478 0.00 0.00 32.19 4.01
766 1785 5.426689 TTTCTTGGATCTAGTGATGTGCT 57.573 39.130 0.00 0.00 32.19 4.40
767 1786 6.500684 TTTTTCTTGGATCTAGTGATGTGC 57.499 37.500 0.00 0.00 32.19 4.57
768 1787 8.048534 ACATTTTTCTTGGATCTAGTGATGTG 57.951 34.615 0.00 0.00 32.19 3.21
769 1788 9.388506 CTACATTTTTCTTGGATCTAGTGATGT 57.611 33.333 0.00 0.00 32.19 3.06
770 1789 9.605275 TCTACATTTTTCTTGGATCTAGTGATG 57.395 33.333 0.00 0.00 32.19 3.07
772 1791 9.658799 CTTCTACATTTTTCTTGGATCTAGTGA 57.341 33.333 0.00 0.00 0.00 3.41
775 1794 8.498054 TGCTTCTACATTTTTCTTGGATCTAG 57.502 34.615 0.00 0.00 0.00 2.43
776 1795 8.103305 ACTGCTTCTACATTTTTCTTGGATCTA 58.897 33.333 0.00 0.00 0.00 1.98
777 1796 6.944862 ACTGCTTCTACATTTTTCTTGGATCT 59.055 34.615 0.00 0.00 0.00 2.75
782 1801 5.978919 TGCAACTGCTTCTACATTTTTCTTG 59.021 36.000 2.95 0.00 42.66 3.02
784 1803 5.772825 TGCAACTGCTTCTACATTTTTCT 57.227 34.783 2.95 0.00 42.66 2.52
787 1806 4.342092 ACCTTGCAACTGCTTCTACATTTT 59.658 37.500 0.00 0.00 42.66 1.82
788 1807 3.891366 ACCTTGCAACTGCTTCTACATTT 59.109 39.130 0.00 0.00 42.66 2.32
789 1808 3.490348 ACCTTGCAACTGCTTCTACATT 58.510 40.909 0.00 0.00 42.66 2.71
790 1809 3.077359 GACCTTGCAACTGCTTCTACAT 58.923 45.455 0.00 0.00 42.66 2.29
791 1810 2.494059 GACCTTGCAACTGCTTCTACA 58.506 47.619 0.00 0.00 42.66 2.74
792 1811 1.807142 GGACCTTGCAACTGCTTCTAC 59.193 52.381 0.00 0.00 42.66 2.59
793 1812 1.608025 CGGACCTTGCAACTGCTTCTA 60.608 52.381 0.00 0.00 42.66 2.10
795 1814 0.884704 TCGGACCTTGCAACTGCTTC 60.885 55.000 0.00 0.00 42.66 3.86
796 1815 0.465460 TTCGGACCTTGCAACTGCTT 60.465 50.000 0.00 0.00 42.66 3.91
797 1816 0.250901 ATTCGGACCTTGCAACTGCT 60.251 50.000 0.00 0.00 42.66 4.24
798 1817 1.448985 TATTCGGACCTTGCAACTGC 58.551 50.000 0.00 0.00 42.50 4.40
801 1820 3.876914 TCATCATATTCGGACCTTGCAAC 59.123 43.478 0.00 0.00 0.00 4.17
802 1821 4.129380 CTCATCATATTCGGACCTTGCAA 58.871 43.478 0.00 0.00 0.00 4.08
803 1822 3.387699 TCTCATCATATTCGGACCTTGCA 59.612 43.478 0.00 0.00 0.00 4.08
804 1823 3.995199 TCTCATCATATTCGGACCTTGC 58.005 45.455 0.00 0.00 0.00 4.01
805 1824 5.359756 TGTTCTCATCATATTCGGACCTTG 58.640 41.667 0.00 0.00 0.00 3.61
806 1825 5.614324 TGTTCTCATCATATTCGGACCTT 57.386 39.130 0.00 0.00 0.00 3.50
807 1826 5.815233 ATGTTCTCATCATATTCGGACCT 57.185 39.130 0.00 0.00 0.00 3.85
809 1828 7.251704 ACAAATGTTCTCATCATATTCGGAC 57.748 36.000 0.00 0.00 32.56 4.79
810 1829 7.864108 AACAAATGTTCTCATCATATTCGGA 57.136 32.000 0.00 0.00 31.64 4.55
811 1830 7.970061 ACAAACAAATGTTCTCATCATATTCGG 59.030 33.333 0.00 0.00 37.25 4.30
812 1831 8.791605 CACAAACAAATGTTCTCATCATATTCG 58.208 33.333 0.00 0.00 37.25 3.34
814 1833 9.414295 CACACAAACAAATGTTCTCATCATATT 57.586 29.630 0.00 0.00 37.25 1.28
816 1835 7.861872 CACACACAAACAAATGTTCTCATCATA 59.138 33.333 0.00 0.00 37.25 2.15
817 1836 6.698329 CACACACAAACAAATGTTCTCATCAT 59.302 34.615 0.00 0.00 37.25 2.45
820 1839 5.806502 CACACACACAAACAAATGTTCTCAT 59.193 36.000 0.00 0.00 37.25 2.90
821 1840 5.159925 CACACACACAAACAAATGTTCTCA 58.840 37.500 0.00 0.00 37.25 3.27
823 1842 4.922692 CACACACACACAAACAAATGTTCT 59.077 37.500 0.00 0.00 37.25 3.01
824 1843 4.683781 ACACACACACACAAACAAATGTTC 59.316 37.500 0.00 0.00 37.25 3.18
828 1847 3.986572 CACACACACACACACAAACAAAT 59.013 39.130 0.00 0.00 0.00 2.32
829 1848 3.181486 ACACACACACACACACAAACAAA 60.181 39.130 0.00 0.00 0.00 2.83
830 1849 2.359214 ACACACACACACACACAAACAA 59.641 40.909 0.00 0.00 0.00 2.83
831 1850 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
832 1851 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
833 1852 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
834 1853 1.598882 ACACACACACACACACACAA 58.401 45.000 0.00 0.00 0.00 3.33
835 1854 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
837 1856 0.877743 CCAACACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
838 1857 0.170116 CCCAACACACACACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
840 1859 1.806568 CCCCAACACACACACACAC 59.193 57.895 0.00 0.00 0.00 3.82
841 1860 2.049185 GCCCCAACACACACACACA 61.049 57.895 0.00 0.00 0.00 3.72
842 1861 1.752694 AGCCCCAACACACACACAC 60.753 57.895 0.00 0.00 0.00 3.82
844 1863 1.453015 TCAGCCCCAACACACACAC 60.453 57.895 0.00 0.00 0.00 3.82
845 1864 1.453015 GTCAGCCCCAACACACACA 60.453 57.895 0.00 0.00 0.00 3.72
846 1865 2.193536 GGTCAGCCCCAACACACAC 61.194 63.158 0.00 0.00 0.00 3.82
847 1866 2.194597 GGTCAGCCCCAACACACA 59.805 61.111 0.00 0.00 0.00 3.72
848 1867 1.898574 CAGGTCAGCCCCAACACAC 60.899 63.158 0.00 0.00 34.57 3.82
849 1868 2.075566 TCAGGTCAGCCCCAACACA 61.076 57.895 0.00 0.00 34.57 3.72
850 1869 1.600916 GTCAGGTCAGCCCCAACAC 60.601 63.158 0.00 0.00 34.57 3.32
853 1872 1.455849 CTTGTCAGGTCAGCCCCAA 59.544 57.895 0.00 0.00 34.57 4.12
854 1873 2.528818 CCTTGTCAGGTCAGCCCCA 61.529 63.158 0.00 0.00 35.06 4.96
855 1874 2.352805 CCTTGTCAGGTCAGCCCC 59.647 66.667 0.00 0.00 35.06 5.80
864 1883 3.313012 TTCCATCGTACACCTTGTCAG 57.687 47.619 0.00 0.00 0.00 3.51
865 1884 3.395639 GTTTCCATCGTACACCTTGTCA 58.604 45.455 0.00 0.00 0.00 3.58
866 1885 2.740447 GGTTTCCATCGTACACCTTGTC 59.260 50.000 0.00 0.00 0.00 3.18
868 1887 3.000727 GAGGTTTCCATCGTACACCTTG 58.999 50.000 0.79 0.00 38.01 3.61
870 1889 1.553704 GGAGGTTTCCATCGTACACCT 59.446 52.381 0.00 0.00 43.45 4.00
871 1890 1.553704 AGGAGGTTTCCATCGTACACC 59.446 52.381 0.00 0.00 46.64 4.16
873 1892 3.670625 CAAAGGAGGTTTCCATCGTACA 58.329 45.455 0.00 0.00 46.64 2.90
874 1893 2.418976 GCAAAGGAGGTTTCCATCGTAC 59.581 50.000 0.00 0.00 46.64 3.67
875 1894 2.706890 GCAAAGGAGGTTTCCATCGTA 58.293 47.619 0.00 0.00 46.64 3.43
876 1895 1.534729 GCAAAGGAGGTTTCCATCGT 58.465 50.000 0.00 0.00 46.64 3.73
877 1896 0.447801 CGCAAAGGAGGTTTCCATCG 59.552 55.000 0.00 0.00 46.64 3.84
878 1897 0.811281 CCGCAAAGGAGGTTTCCATC 59.189 55.000 0.00 0.00 46.64 3.51
881 1900 2.962569 GCCGCAAAGGAGGTTTCC 59.037 61.111 0.00 0.00 45.00 3.13
883 1902 3.670377 GCGCCGCAAAGGAGGTTT 61.670 61.111 3.15 0.00 45.00 3.27
887 1906 1.970917 CTTGTAGCGCCGCAAAGGAG 61.971 60.000 13.36 0.00 45.00 3.69
888 1907 2.031314 TTGTAGCGCCGCAAAGGA 59.969 55.556 13.36 0.00 45.00 3.36
890 1909 1.004927 GTATCTTGTAGCGCCGCAAAG 60.005 52.381 13.36 12.19 0.00 2.77
892 1911 0.808453 GGTATCTTGTAGCGCCGCAA 60.808 55.000 13.36 9.05 0.00 4.85
893 1912 1.227147 GGTATCTTGTAGCGCCGCA 60.227 57.895 13.36 0.00 0.00 5.69
894 1913 2.300787 CGGTATCTTGTAGCGCCGC 61.301 63.158 2.29 0.00 32.73 6.53
896 1915 2.059541 GAATCGGTATCTTGTAGCGCC 58.940 52.381 2.29 0.00 38.20 6.53
897 1916 2.059541 GGAATCGGTATCTTGTAGCGC 58.940 52.381 0.00 0.00 38.20 5.92
898 1917 3.566523 GAGGAATCGGTATCTTGTAGCG 58.433 50.000 0.69 0.69 39.47 4.26
899 1918 3.321111 TGGAGGAATCGGTATCTTGTAGC 59.679 47.826 0.00 0.00 0.00 3.58
900 1919 5.730296 ATGGAGGAATCGGTATCTTGTAG 57.270 43.478 0.00 0.00 0.00 2.74
901 1920 5.600898 TGAATGGAGGAATCGGTATCTTGTA 59.399 40.000 0.00 0.00 0.00 2.41
902 1921 4.408921 TGAATGGAGGAATCGGTATCTTGT 59.591 41.667 0.00 0.00 0.00 3.16
903 1922 4.960938 TGAATGGAGGAATCGGTATCTTG 58.039 43.478 0.00 0.00 0.00 3.02
904 1923 5.832539 ATGAATGGAGGAATCGGTATCTT 57.167 39.130 0.00 0.00 0.00 2.40
905 1924 5.832539 AATGAATGGAGGAATCGGTATCT 57.167 39.130 0.00 0.00 0.00 1.98
906 1925 5.412904 GGAAATGAATGGAGGAATCGGTATC 59.587 44.000 0.00 0.00 0.00 2.24
929 2282 2.492019 TGAGACGATGAATGCGTAGG 57.508 50.000 0.00 0.00 42.77 3.18
968 2323 3.821600 TGCTACTAGCCTACTATGCAGAC 59.178 47.826 5.58 0.00 41.51 3.51
970 2325 3.366883 GCTGCTACTAGCCTACTATGCAG 60.367 52.174 5.58 0.00 42.97 4.41
973 2328 3.823873 ACTGCTGCTACTAGCCTACTATG 59.176 47.826 5.58 0.00 41.51 2.23
974 2329 4.107127 ACTGCTGCTACTAGCCTACTAT 57.893 45.455 5.58 0.00 41.51 2.12
976 2331 2.445682 ACTGCTGCTACTAGCCTACT 57.554 50.000 5.58 0.00 41.51 2.57
977 2332 4.278669 TGATTACTGCTGCTACTAGCCTAC 59.721 45.833 5.58 0.00 41.51 3.18
978 2333 4.470602 TGATTACTGCTGCTACTAGCCTA 58.529 43.478 5.58 0.00 41.51 3.93
979 2334 3.300388 TGATTACTGCTGCTACTAGCCT 58.700 45.455 5.58 0.00 41.51 4.58
982 2337 4.447054 GTGCATGATTACTGCTGCTACTAG 59.553 45.833 0.00 0.00 40.34 2.57
983 2338 4.371786 GTGCATGATTACTGCTGCTACTA 58.628 43.478 0.00 0.00 40.34 1.82
989 2344 1.655484 TCGGTGCATGATTACTGCTG 58.345 50.000 0.00 0.00 40.34 4.41
1052 2429 1.200252 AGTAGTCTACACTGCACTGCG 59.800 52.381 12.54 0.00 37.70 5.18
1057 2434 2.594131 ACACCAGTAGTCTACACTGCA 58.406 47.619 12.54 0.00 41.72 4.41
1058 2435 3.662247 AACACCAGTAGTCTACACTGC 57.338 47.619 12.54 0.00 41.72 4.40
1059 2436 4.307432 CCAAACACCAGTAGTCTACACTG 58.693 47.826 12.54 4.43 42.52 3.66
1060 2437 3.323979 CCCAAACACCAGTAGTCTACACT 59.676 47.826 12.54 0.00 36.55 3.55
1064 2441 2.262637 CCCCCAAACACCAGTAGTCTA 58.737 52.381 0.00 0.00 0.00 2.59
1080 2457 0.471971 TAGCTGCTGGATCTACCCCC 60.472 60.000 13.43 0.00 38.00 5.40
1150 2527 2.745492 GAGCAGAGCCACAGCCAC 60.745 66.667 0.00 0.00 41.25 5.01
1170 2547 3.254024 AAGATCGCCGGCCACAAGT 62.254 57.895 23.46 0.00 0.00 3.16
1438 2963 1.072505 GAACTTGCGTTCCTCCCCA 59.927 57.895 0.00 0.00 42.93 4.96
1544 3074 0.447801 GATGGTCAATGTCACGGCAC 59.552 55.000 0.00 0.00 0.00 5.01
1586 3120 1.071471 CCTTGAACACTCCGGCACT 59.929 57.895 0.00 0.00 0.00 4.40
1619 3154 7.284489 TGGATGCCACCTTACTTATTATTGAAC 59.716 37.037 0.00 0.00 0.00 3.18
1620 3155 7.350382 TGGATGCCACCTTACTTATTATTGAA 58.650 34.615 0.00 0.00 0.00 2.69
1621 3156 6.905736 TGGATGCCACCTTACTTATTATTGA 58.094 36.000 0.00 0.00 0.00 2.57
1622 3157 7.667219 AGATGGATGCCACCTTACTTATTATTG 59.333 37.037 0.00 0.00 35.80 1.90
1623 3158 7.667219 CAGATGGATGCCACCTTACTTATTATT 59.333 37.037 0.00 0.00 35.80 1.40
1624 3159 7.170965 CAGATGGATGCCACCTTACTTATTAT 58.829 38.462 0.00 0.00 35.80 1.28
1644 3185 7.648112 TCGTTAGTAGCTTAAACATAGCAGATG 59.352 37.037 0.00 0.00 41.11 2.90
1661 3202 1.488527 GAAGGCGGCATCGTTAGTAG 58.511 55.000 13.08 0.00 38.89 2.57
1684 3231 3.815809 TGCTGCAACCTTACAGTTACTT 58.184 40.909 0.00 0.00 36.26 2.24
1707 3254 4.985409 CGTCTTCTCCCATTAATACAGCTC 59.015 45.833 0.00 0.00 0.00 4.09
1770 3319 4.880696 TGTCAACAATTCATCACACTGACA 59.119 37.500 0.00 0.00 39.54 3.58
1829 3395 1.803334 AAAAATGCACGTCGAGCCTA 58.197 45.000 12.18 0.00 0.00 3.93
1843 3409 5.175127 GGGGCAATGTTTGTCGATAAAAAT 58.825 37.500 9.04 6.70 35.72 1.82
1848 3414 1.004862 TGGGGGCAATGTTTGTCGATA 59.995 47.619 0.00 0.00 35.72 2.92
1882 3448 9.827411 GGAATTTAACAAGAGTAAACTTAGCAG 57.173 33.333 0.00 0.00 0.00 4.24
1977 3658 4.344679 TGATGTTGCTGGATTTCCTTGTTT 59.655 37.500 0.00 0.00 36.82 2.83
1995 3677 5.762218 GCTATAGGCTTGAAACTGATGATGT 59.238 40.000 1.04 0.00 38.06 3.06
2023 3707 1.145803 GAAAGTGGTCACAGGTACGC 58.854 55.000 3.82 0.00 0.00 4.42
2098 3794 7.092444 ACAGGAATAATGAACATGGACTCCTAA 60.092 37.037 0.00 0.00 0.00 2.69
2129 3825 5.568620 AACTCATGTTTCCTCTTACTGGT 57.431 39.130 0.00 0.00 31.37 4.00
2130 3826 6.884280 AAAACTCATGTTTCCTCTTACTGG 57.116 37.500 0.00 0.00 44.70 4.00
2220 3916 5.586877 TGGTTCAGTATCTACAACCCTACT 58.413 41.667 6.98 0.00 38.02 2.57
2221 3917 5.163437 CCTGGTTCAGTATCTACAACCCTAC 60.163 48.000 6.98 0.00 38.02 3.18
2285 3982 5.607119 AAACTTGCATCGTCGTTTAGATT 57.393 34.783 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.