Multiple sequence alignment - TraesCS6B01G413500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G413500 chr6B 100.000 2952 0 0 1 2952 687017760 687014809 0.000000e+00 5452.0
1 TraesCS6B01G413500 chr6B 86.212 1407 115 36 908 2272 687083299 687084668 0.000000e+00 1450.0
2 TraesCS6B01G413500 chr6B 91.860 172 12 2 2688 2859 687004839 687004670 3.800000e-59 239.0
3 TraesCS6B01G413500 chr6B 100.000 30 0 0 2658 2687 687004908 687004879 4.110000e-04 56.5
4 TraesCS6B01G413500 chr6A 91.273 1925 100 34 716 2587 597940264 597938355 0.000000e+00 2562.0
5 TraesCS6B01G413500 chr6A 83.281 1579 159 64 992 2495 598024337 598025885 0.000000e+00 1356.0
6 TraesCS6B01G413500 chr6A 81.190 521 55 21 1 482 597940978 597940462 2.150000e-101 379.0
7 TraesCS6B01G413500 chr6A 98.305 59 1 0 2894 2952 597938028 597937970 1.450000e-18 104.0
8 TraesCS6B01G413500 chr6A 96.610 59 2 0 2894 2952 597932572 597932514 6.730000e-17 99.0
9 TraesCS6B01G413500 chr6D 90.554 1715 91 38 902 2575 452406302 452404618 0.000000e+00 2204.0
10 TraesCS6B01G413500 chr6D 86.541 1486 112 40 992 2407 452454895 452456362 0.000000e+00 1555.0
11 TraesCS6B01G413500 chr6D 87.460 311 26 6 1 302 452407615 452407309 2.180000e-91 346.0
12 TraesCS6B01G413500 chr6D 88.268 179 19 2 309 485 452407008 452406830 2.300000e-51 213.0
13 TraesCS6B01G413500 chr6D 87.719 171 14 2 2688 2858 452404282 452404119 3.000000e-45 193.0
14 TraesCS6B01G413500 chr6D 85.876 177 11 5 715 891 452406837 452406675 3.020000e-40 176.0
15 TraesCS6B01G413500 chrUn 92.118 406 26 5 1214 1618 306829854 306830254 4.270000e-158 568.0
16 TraesCS6B01G413500 chrUn 91.339 254 20 2 470 722 59805076 59805328 2.180000e-91 346.0
17 TraesCS6B01G413500 chr3B 92.118 406 26 5 1214 1618 809102338 809102738 4.270000e-158 568.0
18 TraesCS6B01G413500 chr3B 92.079 404 23 8 1219 1618 783880986 783881384 7.140000e-156 560.0
19 TraesCS6B01G413500 chr3B 92.276 246 17 2 479 722 582366033 582366278 6.060000e-92 348.0
20 TraesCS6B01G413500 chr3A 91.872 406 27 5 1214 1618 736251651 736252051 1.990000e-156 562.0
21 TraesCS6B01G413500 chr3A 83.333 312 26 15 2034 2322 92676795 92676487 6.270000e-67 265.0
22 TraesCS6B01G413500 chr5B 92.975 242 15 2 479 718 638241151 638241392 4.680000e-93 351.0
23 TraesCS6B01G413500 chr5B 92.593 243 16 2 481 722 402984660 402984901 6.060000e-92 348.0
24 TraesCS6B01G413500 chr1B 92.917 240 16 1 480 718 68886078 68885839 6.060000e-92 348.0
25 TraesCS6B01G413500 chr1B 92.531 241 17 1 480 719 270823937 270824177 7.830000e-91 344.0
26 TraesCS6B01G413500 chr7B 91.935 248 17 3 474 718 437689782 437689535 7.830000e-91 344.0
27 TraesCS6B01G413500 chr4A 91.633 251 18 3 474 723 648143483 648143731 7.830000e-91 344.0
28 TraesCS6B01G413500 chr2B 90.945 254 21 2 470 722 181755044 181755296 1.010000e-89 340.0
29 TraesCS6B01G413500 chr1A 83.944 355 29 18 2034 2364 515828527 515828177 6.140000e-82 315.0
30 TraesCS6B01G413500 chr3D 82.955 264 19 17 2034 2274 544189122 544189382 6.410000e-52 215.0
31 TraesCS6B01G413500 chr3D 79.710 276 18 18 2034 2274 126257000 126256728 6.550000e-37 165.0
32 TraesCS6B01G413500 chr3D 88.496 113 9 2 2578 2690 126256625 126256517 1.850000e-27 134.0
33 TraesCS6B01G413500 chr3D 88.182 110 8 3 2578 2687 544189485 544189589 3.090000e-25 126.0
34 TraesCS6B01G413500 chr3D 91.304 69 6 0 2688 2756 126256479 126256411 8.710000e-16 95.3
35 TraesCS6B01G413500 chr1D 88.439 173 17 3 2102 2274 155903457 155903626 3.860000e-49 206.0
36 TraesCS6B01G413500 chr1D 91.791 134 9 2 2685 2818 489723134 489723265 5.020000e-43 185.0
37 TraesCS6B01G413500 chr1D 89.474 114 8 2 2574 2687 155903725 155903834 1.100000e-29 141.0
38 TraesCS6B01G413500 chr1D 94.203 69 4 0 2688 2756 155903875 155903943 4.020000e-19 106.0
39 TraesCS6B01G413500 chr5D 92.391 92 7 0 2150 2241 394199451 394199360 6.640000e-27 132.0
40 TraesCS6B01G413500 chr2D 92.754 69 5 0 2688 2756 305469954 305469886 1.870000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G413500 chr6B 687014809 687017760 2951 True 5452.0 5452 100.0000 1 2952 1 chr6B.!!$R1 2951
1 TraesCS6B01G413500 chr6B 687083299 687084668 1369 False 1450.0 1450 86.2120 908 2272 1 chr6B.!!$F1 1364
2 TraesCS6B01G413500 chr6A 598024337 598025885 1548 False 1356.0 1356 83.2810 992 2495 1 chr6A.!!$F1 1503
3 TraesCS6B01G413500 chr6A 597937970 597940978 3008 True 1015.0 2562 90.2560 1 2952 3 chr6A.!!$R2 2951
4 TraesCS6B01G413500 chr6D 452454895 452456362 1467 False 1555.0 1555 86.5410 992 2407 1 chr6D.!!$F1 1415
5 TraesCS6B01G413500 chr6D 452404119 452407615 3496 True 626.4 2204 87.9754 1 2858 5 chr6D.!!$R1 2857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 221 0.60813 GGCCAAAACCAACTCATCCC 59.392 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2959 1.079543 CAGCTTCACCAGAGACCCG 60.08 63.158 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 121 4.405358 TCCAAATGGCCATAATGACTTTCC 59.595 41.667 25.57 0.00 34.44 3.13
186 221 0.608130 GGCCAAAACCAACTCATCCC 59.392 55.000 0.00 0.00 0.00 3.85
189 224 2.171003 CCAAAACCAACTCATCCCCTC 58.829 52.381 0.00 0.00 0.00 4.30
199 234 1.701847 CTCATCCCCTCCCCTTGTATG 59.298 57.143 0.00 0.00 0.00 2.39
205 240 3.050564 TCCCCTCCCCTTGTATGATTACT 60.051 47.826 0.00 0.00 0.00 2.24
206 241 3.722101 CCCCTCCCCTTGTATGATTACTT 59.278 47.826 0.00 0.00 0.00 2.24
213 250 5.073691 CCCCTTGTATGATTACTTCATCCCT 59.926 44.000 0.00 0.00 44.13 4.20
221 260 7.865706 ATGATTACTTCATCCCTTGTTGTAC 57.134 36.000 0.00 0.00 41.36 2.90
245 284 4.980702 TGCAGCCCACCCAAGCAG 62.981 66.667 0.00 0.00 0.00 4.24
250 289 1.304381 GCCCACCCAAGCAGATGAA 60.304 57.895 0.00 0.00 0.00 2.57
253 292 1.273327 CCCACCCAAGCAGATGAAAAC 59.727 52.381 0.00 0.00 0.00 2.43
258 297 2.629617 CCCAAGCAGATGAAAACCTGTT 59.370 45.455 0.00 0.00 33.19 3.16
327 660 5.178996 GCACCATTTTGTATGTGCAATTTGA 59.821 36.000 8.46 0.00 37.71 2.69
378 712 0.940126 GCAATCATTCATCCGTCGCT 59.060 50.000 0.00 0.00 0.00 4.93
395 729 3.853671 GTCGCTCGAAATGCATTGAAAAT 59.146 39.130 13.82 0.00 0.00 1.82
398 732 4.501559 CGCTCGAAATGCATTGAAAATCAT 59.498 37.500 13.82 0.00 0.00 2.45
419 756 5.237127 TCATGATGAAATGCGTATCTTGGTC 59.763 40.000 0.00 0.00 30.99 4.02
427 764 2.427453 TGCGTATCTTGGTCTTCTCTCC 59.573 50.000 0.00 0.00 0.00 3.71
428 765 2.691011 GCGTATCTTGGTCTTCTCTCCT 59.309 50.000 0.00 0.00 0.00 3.69
435 772 0.753848 GGTCTTCTCTCCTCCTCGGG 60.754 65.000 0.00 0.00 0.00 5.14
455 792 8.963725 CCTCGGGTTTTATTTATTTCCTAAGTT 58.036 33.333 0.00 0.00 0.00 2.66
483 820 9.632638 ATCCATTGATAAACTATTTGCAGTACT 57.367 29.630 0.00 0.00 0.00 2.73
488 825 9.953565 TTGATAAACTATTTGCAGTACTACCTT 57.046 29.630 0.00 0.00 0.00 3.50
489 826 9.595823 TGATAAACTATTTGCAGTACTACCTTC 57.404 33.333 0.00 0.00 0.00 3.46
490 827 6.963049 AAACTATTTGCAGTACTACCTTCG 57.037 37.500 0.00 0.00 0.00 3.79
494 831 0.806868 TGCAGTACTACCTTCGTCCG 59.193 55.000 0.00 0.00 0.00 4.79
496 833 0.737219 CAGTACTACCTTCGTCCGGG 59.263 60.000 0.00 0.00 0.00 5.73
499 836 1.546029 GTACTACCTTCGTCCGGGTTT 59.454 52.381 0.00 0.00 37.07 3.27
500 837 1.923356 ACTACCTTCGTCCGGGTTTA 58.077 50.000 0.00 0.00 37.07 2.01
501 838 2.460669 ACTACCTTCGTCCGGGTTTAT 58.539 47.619 0.00 0.00 37.07 1.40
504 841 1.339342 ACCTTCGTCCGGGTTTATTGG 60.339 52.381 0.00 0.00 30.80 3.16
506 843 2.093553 CCTTCGTCCGGGTTTATTGGTA 60.094 50.000 0.00 0.00 0.00 3.25
510 847 3.766591 TCGTCCGGGTTTATTGGTACTTA 59.233 43.478 0.00 0.00 0.00 2.24
511 848 4.405358 TCGTCCGGGTTTATTGGTACTTAT 59.595 41.667 0.00 0.00 0.00 1.73
513 850 5.006941 CGTCCGGGTTTATTGGTACTTATTG 59.993 44.000 0.00 0.00 0.00 1.90
514 851 5.882000 GTCCGGGTTTATTGGTACTTATTGT 59.118 40.000 0.00 0.00 0.00 2.71
515 852 7.047271 GTCCGGGTTTATTGGTACTTATTGTA 58.953 38.462 0.00 0.00 0.00 2.41
516 853 7.716560 GTCCGGGTTTATTGGTACTTATTGTAT 59.283 37.037 0.00 0.00 33.23 2.29
517 854 8.273605 TCCGGGTTTATTGGTACTTATTGTATT 58.726 33.333 0.00 0.00 33.23 1.89
525 862 6.518208 TGGTACTTATTGTATTTTGTGCCC 57.482 37.500 0.00 0.00 33.23 5.36
526 863 6.010850 TGGTACTTATTGTATTTTGTGCCCA 58.989 36.000 0.00 0.00 33.23 5.36
527 864 6.493802 TGGTACTTATTGTATTTTGTGCCCAA 59.506 34.615 0.00 0.00 33.23 4.12
528 865 7.179338 TGGTACTTATTGTATTTTGTGCCCAAT 59.821 33.333 0.00 0.00 33.23 3.16
529 866 8.038351 GGTACTTATTGTATTTTGTGCCCAATT 58.962 33.333 0.00 0.00 33.23 2.32
531 868 8.916628 ACTTATTGTATTTTGTGCCCAATTTT 57.083 26.923 0.00 0.00 0.00 1.82
532 869 8.782144 ACTTATTGTATTTTGTGCCCAATTTTG 58.218 29.630 0.00 0.00 0.00 2.44
533 870 8.908786 TTATTGTATTTTGTGCCCAATTTTGA 57.091 26.923 0.00 0.00 0.00 2.69
534 871 7.999450 ATTGTATTTTGTGCCCAATTTTGAT 57.001 28.000 0.00 0.00 0.00 2.57
536 873 6.528321 TGTATTTTGTGCCCAATTTTGATCA 58.472 32.000 0.00 0.00 0.00 2.92
538 875 8.316946 TGTATTTTGTGCCCAATTTTGATCATA 58.683 29.630 0.00 0.00 0.00 2.15
539 876 7.852971 ATTTTGTGCCCAATTTTGATCATAG 57.147 32.000 0.00 0.00 0.00 2.23
540 877 6.602410 TTTGTGCCCAATTTTGATCATAGA 57.398 33.333 0.00 0.00 0.00 1.98
541 878 6.795144 TTGTGCCCAATTTTGATCATAGAT 57.205 33.333 0.00 0.00 0.00 1.98
542 879 6.795144 TGTGCCCAATTTTGATCATAGATT 57.205 33.333 0.00 0.00 0.00 2.40
543 880 7.894753 TGTGCCCAATTTTGATCATAGATTA 57.105 32.000 0.00 0.00 0.00 1.75
545 882 8.756927 TGTGCCCAATTTTGATCATAGATTAAA 58.243 29.630 0.00 0.00 0.00 1.52
546 883 9.034544 GTGCCCAATTTTGATCATAGATTAAAC 57.965 33.333 0.00 0.00 0.00 2.01
547 884 8.980596 TGCCCAATTTTGATCATAGATTAAACT 58.019 29.630 0.00 0.00 0.00 2.66
570 907 9.716507 AACTAATAAAATGTTCACGCATATCAC 57.283 29.630 0.00 0.00 0.00 3.06
571 908 8.342634 ACTAATAAAATGTTCACGCATATCACC 58.657 33.333 0.00 0.00 0.00 4.02
572 909 6.691754 ATAAAATGTTCACGCATATCACCA 57.308 33.333 0.00 0.00 0.00 4.17
573 910 5.581126 AAAATGTTCACGCATATCACCAT 57.419 34.783 0.00 0.00 0.00 3.55
575 912 5.673337 AATGTTCACGCATATCACCATAC 57.327 39.130 0.00 0.00 0.00 2.39
576 913 4.130286 TGTTCACGCATATCACCATACA 57.870 40.909 0.00 0.00 0.00 2.29
580 917 6.934083 TGTTCACGCATATCACCATACATTAT 59.066 34.615 0.00 0.00 0.00 1.28
581 918 8.091449 TGTTCACGCATATCACCATACATTATA 58.909 33.333 0.00 0.00 0.00 0.98
582 919 9.098355 GTTCACGCATATCACCATACATTATAT 57.902 33.333 0.00 0.00 0.00 0.86
583 920 9.665719 TTCACGCATATCACCATACATTATATT 57.334 29.630 0.00 0.00 0.00 1.28
584 921 9.665719 TCACGCATATCACCATACATTATATTT 57.334 29.630 0.00 0.00 0.00 1.40
653 990 9.539825 TTTGACATGCATTAACATTTTGTTAGT 57.460 25.926 0.00 0.00 42.93 2.24
654 991 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
683 1020 9.777297 ATATTTAGTCAAAATTTGGCACAAACT 57.223 25.926 13.11 6.87 40.37 2.66
694 1031 2.092323 GGCACAAACTATGAAGGGACC 58.908 52.381 0.00 0.00 0.00 4.46
697 1034 4.385310 GGCACAAACTATGAAGGGACCTAT 60.385 45.833 0.00 0.00 0.00 2.57
698 1035 5.163237 GGCACAAACTATGAAGGGACCTATA 60.163 44.000 0.00 0.00 0.00 1.31
699 1036 6.354130 GCACAAACTATGAAGGGACCTATAA 58.646 40.000 0.00 0.00 0.00 0.98
702 1039 7.282450 CACAAACTATGAAGGGACCTATAAACC 59.718 40.741 0.00 0.00 0.00 3.27
705 1042 6.449956 ACTATGAAGGGACCTATAAACCAGA 58.550 40.000 0.00 0.00 0.00 3.86
711 1048 3.181468 GGGACCTATAAACCAGAACGGAG 60.181 52.174 0.00 0.00 38.63 4.63
713 1050 3.447950 ACCTATAAACCAGAACGGAGGT 58.552 45.455 0.00 0.00 40.61 3.85
714 1051 4.613437 ACCTATAAACCAGAACGGAGGTA 58.387 43.478 0.00 0.00 35.66 3.08
731 1099 5.447573 GGAGGTAGTAACTAATAACGCTCG 58.552 45.833 0.00 0.00 0.00 5.03
746 1114 2.124736 TCGCCCCACATTAGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
747 1115 2.438254 CGCCCCACATTAGCAGCA 60.438 61.111 0.00 0.00 0.00 4.41
748 1116 2.475466 CGCCCCACATTAGCAGCAG 61.475 63.158 0.00 0.00 0.00 4.24
756 1124 3.384789 CCACATTAGCAGCAGTACTAGGA 59.615 47.826 0.00 0.00 0.00 2.94
762 1130 6.985188 TTAGCAGCAGTACTAGGATTTTTG 57.015 37.500 0.00 0.00 0.00 2.44
763 1131 5.165961 AGCAGCAGTACTAGGATTTTTGA 57.834 39.130 0.00 0.00 0.00 2.69
766 1134 5.734720 CAGCAGTACTAGGATTTTTGAGGA 58.265 41.667 0.00 0.00 0.00 3.71
787 1155 8.259411 TGAGGATTTATTTAAGCATGCAAATGT 58.741 29.630 21.98 8.60 0.00 2.71
789 1157 7.496591 AGGATTTATTTAAGCATGCAAATGTGG 59.503 33.333 21.98 0.00 0.00 4.17
790 1158 6.981762 TTTATTTAAGCATGCAAATGTGGG 57.018 33.333 21.98 0.00 0.00 4.61
791 1159 4.822685 ATTTAAGCATGCAAATGTGGGA 57.177 36.364 21.98 0.00 0.00 4.37
792 1160 4.613925 TTTAAGCATGCAAATGTGGGAA 57.386 36.364 21.98 0.00 0.00 3.97
795 1163 0.896923 GCATGCAAATGTGGGAAGGA 59.103 50.000 14.21 0.00 0.00 3.36
841 1209 2.595386 CAAATGACTAGCGGCCAAAAC 58.405 47.619 2.24 0.00 0.00 2.43
1131 1868 1.891919 GCTGGCGTTGAAGACCACA 60.892 57.895 0.00 0.00 0.00 4.17
1291 2028 2.667199 TCGTCGTCGACCTCTGCA 60.667 61.111 19.29 0.00 41.35 4.41
1636 2373 0.319728 CTACATGATGCTCTCGGGGG 59.680 60.000 0.00 0.00 0.00 5.40
1814 2551 1.986378 CGAACAAGTCCTGAGTAAGCG 59.014 52.381 0.00 0.00 0.00 4.68
1886 2645 1.673033 CCTCGCTGACGTTTCTGGATT 60.673 52.381 0.00 0.00 41.18 3.01
1967 2726 1.672881 GCTGAAGAAATGGATGGACCG 59.327 52.381 0.00 0.00 42.61 4.79
2070 2881 3.050275 GGCGGTGGACAGAAGCAC 61.050 66.667 0.00 0.00 0.00 4.40
2077 2888 3.050275 GACAGAAGCACCGGTGGC 61.050 66.667 34.58 25.54 0.00 5.01
2078 2889 3.825160 GACAGAAGCACCGGTGGCA 62.825 63.158 34.58 0.00 0.00 4.92
2081 2892 4.947147 GAAGCACCGGTGGCACCA 62.947 66.667 34.58 0.00 38.47 4.17
2117 2956 7.720515 TCAGTAAGTAGATCCTTTAGGTCTAGC 59.279 40.741 7.77 0.00 32.49 3.42
2120 2959 5.065235 AGTAGATCCTTTAGGTCTAGCGAC 58.935 45.833 7.77 0.00 39.49 5.19
2148 2987 0.529378 GGTGAAGCTGGAATTGCAGG 59.471 55.000 25.92 9.99 0.00 4.85
2159 2998 0.883833 AATTGCAGGAGCTTTCACCG 59.116 50.000 0.00 0.00 42.74 4.94
2333 3201 4.746729 TGGAGCAAAAATATGTGCATGTC 58.253 39.130 8.51 0.00 43.42 3.06
2335 3203 5.039333 GGAGCAAAAATATGTGCATGTCTC 58.961 41.667 8.51 0.00 43.42 3.36
2366 3238 1.206072 CTGCGTGCTGCTTCAGTTC 59.794 57.895 0.00 0.00 46.63 3.01
2388 3260 1.000955 ACTCGCCGTCAATCTTCTGTT 59.999 47.619 0.00 0.00 0.00 3.16
2391 3263 1.656095 CGCCGTCAATCTTCTGTTCTC 59.344 52.381 0.00 0.00 0.00 2.87
2394 3266 2.622436 CGTCAATCTTCTGTTCTCCCC 58.378 52.381 0.00 0.00 0.00 4.81
2472 3356 1.225827 GTGCGATGTCATGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2475 3359 1.717348 CGATGTCATGTGTGCGCAT 59.283 52.632 15.91 0.00 0.00 4.73
2476 3360 0.929615 CGATGTCATGTGTGCGCATA 59.070 50.000 15.91 8.59 0.00 3.14
2512 3399 1.140816 GACTGTCTTTGCTGTCCGAC 58.859 55.000 0.00 0.00 33.17 4.79
2525 3412 3.545481 CCGACGATGCGTGCTGAC 61.545 66.667 0.00 0.00 41.37 3.51
2561 3448 5.992217 AGGATACGCTTTTGATTCAGATACC 59.008 40.000 0.00 0.00 46.39 2.73
2575 3462 1.153208 ATACCAGCAGCAGAGCAGC 60.153 57.895 0.00 0.00 41.34 5.25
2630 3711 3.582662 TCCCGTGGGATGTTGGTT 58.417 55.556 2.72 0.00 39.76 3.67
2633 3714 0.676782 CCCGTGGGATGTTGGTTCTC 60.677 60.000 0.00 0.00 37.50 2.87
2649 3730 4.142403 TGGTTCTCAACTTTTGTCTGCAAG 60.142 41.667 0.00 0.00 35.82 4.01
2677 3758 5.949354 TGGGTTCTTAATCACCATTAACCAG 59.051 40.000 0.00 0.00 32.73 4.00
2682 3763 1.651987 ATCACCATTAACCAGTCGCG 58.348 50.000 0.00 0.00 0.00 5.87
2686 3807 2.933906 CACCATTAACCAGTCGCGTTAT 59.066 45.455 5.77 0.00 0.00 1.89
2722 3843 6.205784 CACTTTTACTGCCGAAAATGAAGAA 58.794 36.000 0.00 0.00 0.00 2.52
2739 3860 2.673833 AGAACCGAAAACGCTCTACTG 58.326 47.619 0.00 0.00 0.00 2.74
2759 3880 5.650543 ACTGCCTAACTGAAAACACTTTTG 58.349 37.500 0.00 0.00 31.94 2.44
2768 3889 4.810790 TGAAAACACTTTTGCTTCCGAAA 58.189 34.783 0.00 0.00 31.94 3.46
2773 3894 7.835634 AAACACTTTTGCTTCCGAAATTTTA 57.164 28.000 0.00 0.00 0.00 1.52
2777 3898 7.926018 ACACTTTTGCTTCCGAAATTTTATCTT 59.074 29.630 0.00 0.00 0.00 2.40
2778 3899 8.216453 CACTTTTGCTTCCGAAATTTTATCTTG 58.784 33.333 0.00 0.00 0.00 3.02
2779 3900 8.141268 ACTTTTGCTTCCGAAATTTTATCTTGA 58.859 29.630 0.00 0.00 0.00 3.02
2780 3901 8.519492 TTTTGCTTCCGAAATTTTATCTTGAG 57.481 30.769 0.00 0.00 0.00 3.02
2809 3930 2.495084 ACTTCGGAAACTGAAAGGCTC 58.505 47.619 0.00 0.00 39.30 4.70
2825 3946 1.512926 GCTCAAAACGCTTCCTCTGA 58.487 50.000 0.00 0.00 0.00 3.27
2826 3947 2.079925 GCTCAAAACGCTTCCTCTGAT 58.920 47.619 0.00 0.00 0.00 2.90
2828 3949 3.329386 CTCAAAACGCTTCCTCTGATGA 58.671 45.455 0.00 0.00 0.00 2.92
2829 3950 3.067106 TCAAAACGCTTCCTCTGATGAC 58.933 45.455 0.00 0.00 0.00 3.06
2830 3951 2.807967 CAAAACGCTTCCTCTGATGACA 59.192 45.455 0.00 0.00 0.00 3.58
2842 3963 2.993220 TCTGATGACATTCGTTTCACCG 59.007 45.455 0.00 0.00 0.00 4.94
2861 3982 2.024918 CACCACTTGCTCGCTGTTT 58.975 52.632 0.00 0.00 0.00 2.83
2894 4015 3.814504 TTTTTGAGGATCCTTGCTCCT 57.185 42.857 17.42 0.00 45.95 3.69
2897 4018 1.068921 GAGGATCCTTGCTCCTCGC 59.931 63.158 17.42 0.00 46.88 5.03
2898 4019 1.382420 AGGATCCTTGCTCCTCGCT 60.382 57.895 9.02 0.00 38.87 4.93
2899 4020 1.227497 GGATCCTTGCTCCTCGCTG 60.227 63.158 3.84 0.00 40.11 5.18
2900 4021 1.680522 GGATCCTTGCTCCTCGCTGA 61.681 60.000 3.84 0.00 40.11 4.26
2901 4022 0.392336 GATCCTTGCTCCTCGCTGAT 59.608 55.000 0.00 0.00 40.11 2.90
2902 4023 0.392336 ATCCTTGCTCCTCGCTGATC 59.608 55.000 0.00 0.00 40.11 2.92
2903 4024 0.685785 TCCTTGCTCCTCGCTGATCT 60.686 55.000 0.00 0.00 40.11 2.75
2904 4025 0.177604 CCTTGCTCCTCGCTGATCTT 59.822 55.000 0.00 0.00 40.11 2.40
2905 4026 1.569708 CTTGCTCCTCGCTGATCTTC 58.430 55.000 0.00 0.00 40.11 2.87
2906 4027 0.897621 TTGCTCCTCGCTGATCTTCA 59.102 50.000 0.00 0.00 40.11 3.02
2907 4028 0.174389 TGCTCCTCGCTGATCTTCAC 59.826 55.000 0.00 0.00 40.11 3.18
2908 4029 0.869454 GCTCCTCGCTGATCTTCACG 60.869 60.000 0.00 0.00 35.14 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 201 1.632589 GGATGAGTTGGTTTTGGCCT 58.367 50.000 3.32 0.00 0.00 5.19
186 221 5.630415 TGAAGTAATCATACAAGGGGAGG 57.370 43.478 0.00 0.00 34.29 4.30
199 234 5.220605 GCGTACAACAAGGGATGAAGTAATC 60.221 44.000 0.00 0.00 0.00 1.75
205 240 2.552599 TGCGTACAACAAGGGATGAA 57.447 45.000 0.00 0.00 0.00 2.57
206 241 2.627945 GATGCGTACAACAAGGGATGA 58.372 47.619 0.00 0.00 0.00 2.92
245 284 3.058914 CGACCAGACAACAGGTTTTCATC 60.059 47.826 1.66 0.00 36.05 2.92
250 289 0.834612 TCCGACCAGACAACAGGTTT 59.165 50.000 0.00 0.00 36.05 3.27
253 292 0.244994 CTCTCCGACCAGACAACAGG 59.755 60.000 0.00 0.00 0.00 4.00
307 346 8.019769 TGACATCAAATTGCACATACAAAATG 57.980 30.769 0.00 0.00 32.27 2.32
327 660 9.528018 CTAACCGCCATTTTTAATATTTGACAT 57.472 29.630 0.00 0.00 0.00 3.06
339 672 2.492088 GCCTTCTCTAACCGCCATTTTT 59.508 45.455 0.00 0.00 0.00 1.94
378 712 7.259161 TCATCATGATTTTCAATGCATTTCGA 58.741 30.769 9.83 1.86 0.00 3.71
395 729 5.125356 ACCAAGATACGCATTTCATCATGA 58.875 37.500 0.00 0.00 0.00 3.07
398 732 4.769688 AGACCAAGATACGCATTTCATCA 58.230 39.130 0.00 0.00 0.00 3.07
419 756 1.562783 AAACCCGAGGAGGAGAGAAG 58.437 55.000 0.00 0.00 45.00 2.85
427 764 8.741603 TTAGGAAATAAATAAAACCCGAGGAG 57.258 34.615 0.00 0.00 0.00 3.69
428 765 8.330993 ACTTAGGAAATAAATAAAACCCGAGGA 58.669 33.333 0.00 0.00 0.00 3.71
467 804 6.461640 ACGAAGGTAGTACTGCAAATAGTTT 58.538 36.000 13.26 0.00 32.19 2.66
468 805 6.034161 ACGAAGGTAGTACTGCAAATAGTT 57.966 37.500 13.26 0.00 32.19 2.24
475 812 0.806868 CGGACGAAGGTAGTACTGCA 59.193 55.000 13.26 0.00 0.00 4.41
482 819 3.192466 CAATAAACCCGGACGAAGGTAG 58.808 50.000 0.73 0.00 34.45 3.18
483 820 2.093553 CCAATAAACCCGGACGAAGGTA 60.094 50.000 0.73 0.00 34.45 3.08
485 822 1.339342 ACCAATAAACCCGGACGAAGG 60.339 52.381 0.73 0.00 0.00 3.46
486 823 2.103537 ACCAATAAACCCGGACGAAG 57.896 50.000 0.73 0.00 0.00 3.79
488 825 2.178580 AGTACCAATAAACCCGGACGA 58.821 47.619 0.73 0.00 0.00 4.20
489 826 2.678471 AGTACCAATAAACCCGGACG 57.322 50.000 0.73 0.00 0.00 4.79
490 827 5.882000 ACAATAAGTACCAATAAACCCGGAC 59.118 40.000 0.73 0.00 0.00 4.79
499 836 8.688151 GGGCACAAAATACAATAAGTACCAATA 58.312 33.333 0.00 0.00 35.05 1.90
500 837 7.179338 TGGGCACAAAATACAATAAGTACCAAT 59.821 33.333 0.00 0.00 35.05 3.16
501 838 6.493802 TGGGCACAAAATACAATAAGTACCAA 59.506 34.615 0.00 0.00 35.05 3.67
504 841 8.996024 AATTGGGCACAAAATACAATAAGTAC 57.004 30.769 4.97 0.00 40.55 2.73
506 843 8.782144 CAAAATTGGGCACAAAATACAATAAGT 58.218 29.630 4.97 0.00 40.55 2.24
510 847 7.664731 TGATCAAAATTGGGCACAAAATACAAT 59.335 29.630 4.97 0.00 40.55 2.71
511 848 6.994496 TGATCAAAATTGGGCACAAAATACAA 59.006 30.769 4.97 0.00 40.55 2.41
513 850 7.614124 ATGATCAAAATTGGGCACAAAATAC 57.386 32.000 4.97 0.00 40.55 1.89
514 851 8.756927 TCTATGATCAAAATTGGGCACAAAATA 58.243 29.630 4.97 0.00 40.55 1.40
515 852 7.622713 TCTATGATCAAAATTGGGCACAAAAT 58.377 30.769 4.97 0.00 40.55 1.82
516 853 7.002250 TCTATGATCAAAATTGGGCACAAAA 57.998 32.000 4.97 0.00 40.55 2.44
517 854 6.602410 TCTATGATCAAAATTGGGCACAAA 57.398 33.333 4.97 0.00 40.55 2.83
520 857 9.034544 GTTTAATCTATGATCAAAATTGGGCAC 57.965 33.333 0.00 0.00 0.00 5.01
521 858 8.980596 AGTTTAATCTATGATCAAAATTGGGCA 58.019 29.630 0.00 0.00 0.00 5.36
545 882 8.342634 GGTGATATGCGTGAACATTTTATTAGT 58.657 33.333 0.00 0.00 0.00 2.24
546 883 8.341903 TGGTGATATGCGTGAACATTTTATTAG 58.658 33.333 0.00 0.00 0.00 1.73
547 884 8.214721 TGGTGATATGCGTGAACATTTTATTA 57.785 30.769 0.00 0.00 0.00 0.98
548 885 7.094508 TGGTGATATGCGTGAACATTTTATT 57.905 32.000 0.00 0.00 0.00 1.40
549 886 6.691754 TGGTGATATGCGTGAACATTTTAT 57.308 33.333 0.00 0.00 0.00 1.40
550 887 6.691754 ATGGTGATATGCGTGAACATTTTA 57.308 33.333 0.00 0.00 0.00 1.52
551 888 5.581126 ATGGTGATATGCGTGAACATTTT 57.419 34.783 0.00 0.00 0.00 1.82
552 889 5.588246 TGTATGGTGATATGCGTGAACATTT 59.412 36.000 0.00 0.00 0.00 2.32
553 890 5.122519 TGTATGGTGATATGCGTGAACATT 58.877 37.500 0.00 0.00 0.00 2.71
554 891 4.702831 TGTATGGTGATATGCGTGAACAT 58.297 39.130 0.00 0.00 0.00 2.71
556 893 5.673337 AATGTATGGTGATATGCGTGAAC 57.327 39.130 0.00 0.00 0.00 3.18
627 964 9.539825 ACTAACAAAATGTTAATGCATGTCAAA 57.460 25.926 0.00 0.00 41.70 2.69
628 965 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
657 994 9.777297 AGTTTGTGCCAAATTTTGACTAAATAT 57.223 25.926 10.72 0.00 35.39 1.28
659 996 9.777297 ATAGTTTGTGCCAAATTTTGACTAAAT 57.223 25.926 10.72 6.93 38.08 1.40
660 997 9.039870 CATAGTTTGTGCCAAATTTTGACTAAA 57.960 29.630 10.72 3.25 0.00 1.85
661 998 8.417106 TCATAGTTTGTGCCAAATTTTGACTAA 58.583 29.630 10.72 2.90 0.00 2.24
662 999 7.946207 TCATAGTTTGTGCCAAATTTTGACTA 58.054 30.769 10.72 9.07 0.00 2.59
663 1000 6.815089 TCATAGTTTGTGCCAAATTTTGACT 58.185 32.000 10.72 7.29 0.00 3.41
664 1001 7.307337 CCTTCATAGTTTGTGCCAAATTTTGAC 60.307 37.037 10.72 0.00 0.00 3.18
665 1002 6.705381 CCTTCATAGTTTGTGCCAAATTTTGA 59.295 34.615 10.72 9.98 0.00 2.69
666 1003 6.073112 CCCTTCATAGTTTGTGCCAAATTTTG 60.073 38.462 1.99 1.99 0.00 2.44
667 1004 5.997129 CCCTTCATAGTTTGTGCCAAATTTT 59.003 36.000 4.07 0.00 0.00 1.82
668 1005 5.306678 TCCCTTCATAGTTTGTGCCAAATTT 59.693 36.000 4.07 0.00 0.00 1.82
669 1006 4.837860 TCCCTTCATAGTTTGTGCCAAATT 59.162 37.500 4.07 3.14 0.00 1.82
670 1007 4.220602 GTCCCTTCATAGTTTGTGCCAAAT 59.779 41.667 4.07 0.00 0.00 2.32
671 1008 3.572255 GTCCCTTCATAGTTTGTGCCAAA 59.428 43.478 0.00 0.00 0.00 3.28
672 1009 3.153919 GTCCCTTCATAGTTTGTGCCAA 58.846 45.455 0.00 0.00 0.00 4.52
673 1010 2.554344 GGTCCCTTCATAGTTTGTGCCA 60.554 50.000 0.00 0.00 0.00 4.92
674 1011 2.092323 GGTCCCTTCATAGTTTGTGCC 58.908 52.381 0.00 0.00 0.00 5.01
675 1012 3.073274 AGGTCCCTTCATAGTTTGTGC 57.927 47.619 0.00 0.00 0.00 4.57
676 1013 7.282450 GGTTTATAGGTCCCTTCATAGTTTGTG 59.718 40.741 0.00 0.00 0.00 3.33
677 1014 7.037153 TGGTTTATAGGTCCCTTCATAGTTTGT 60.037 37.037 0.00 0.00 0.00 2.83
678 1015 7.343357 TGGTTTATAGGTCCCTTCATAGTTTG 58.657 38.462 0.00 0.00 0.00 2.93
679 1016 7.404980 TCTGGTTTATAGGTCCCTTCATAGTTT 59.595 37.037 0.00 0.00 0.00 2.66
680 1017 6.906901 TCTGGTTTATAGGTCCCTTCATAGTT 59.093 38.462 0.00 0.00 0.00 2.24
681 1018 6.449956 TCTGGTTTATAGGTCCCTTCATAGT 58.550 40.000 0.00 0.00 0.00 2.12
682 1019 6.996180 TCTGGTTTATAGGTCCCTTCATAG 57.004 41.667 0.00 0.00 0.00 2.23
683 1020 6.183360 CGTTCTGGTTTATAGGTCCCTTCATA 60.183 42.308 0.00 0.00 0.00 2.15
686 1023 4.439968 CGTTCTGGTTTATAGGTCCCTTC 58.560 47.826 0.00 0.00 0.00 3.46
690 1027 3.181468 CCTCCGTTCTGGTTTATAGGTCC 60.181 52.174 0.00 0.00 39.52 4.46
691 1028 3.450096 ACCTCCGTTCTGGTTTATAGGTC 59.550 47.826 0.00 0.00 35.56 3.85
694 1031 5.848833 ACTACCTCCGTTCTGGTTTATAG 57.151 43.478 0.00 0.00 39.52 1.31
697 1034 5.079643 AGTTACTACCTCCGTTCTGGTTTA 58.920 41.667 0.00 0.00 39.52 2.01
698 1035 3.899980 AGTTACTACCTCCGTTCTGGTTT 59.100 43.478 0.00 0.00 39.52 3.27
699 1036 3.504375 AGTTACTACCTCCGTTCTGGTT 58.496 45.455 0.00 0.00 39.52 3.67
702 1039 6.909357 CGTTATTAGTTACTACCTCCGTTCTG 59.091 42.308 0.00 0.00 0.00 3.02
705 1042 5.358160 AGCGTTATTAGTTACTACCTCCGTT 59.642 40.000 0.00 0.00 0.00 4.44
711 1048 3.977579 GGCGAGCGTTATTAGTTACTACC 59.022 47.826 0.00 0.00 0.00 3.18
713 1050 3.004734 GGGGCGAGCGTTATTAGTTACTA 59.995 47.826 0.00 0.00 0.00 1.82
714 1051 2.223900 GGGGCGAGCGTTATTAGTTACT 60.224 50.000 0.00 0.00 0.00 2.24
731 1099 0.107214 TACTGCTGCTAATGTGGGGC 60.107 55.000 0.00 0.00 0.00 5.80
756 1124 9.669887 TGCATGCTTAAATAAATCCTCAAAAAT 57.330 25.926 20.33 0.00 0.00 1.82
762 1130 8.545420 CACATTTGCATGCTTAAATAAATCCTC 58.455 33.333 20.33 0.00 33.05 3.71
763 1131 7.496591 CCACATTTGCATGCTTAAATAAATCCT 59.503 33.333 20.33 0.35 33.05 3.24
766 1134 7.337167 TCCCACATTTGCATGCTTAAATAAAT 58.663 30.769 20.33 12.02 33.05 1.40
804 1172 0.690192 TTGGAATCCGCTGGAGACAA 59.310 50.000 0.00 5.69 42.06 3.18
841 1209 3.316283 GAATATTCTGCTCGCTCCTCTG 58.684 50.000 8.27 0.00 0.00 3.35
978 1714 1.030488 TCTGGTCCGTCTCCGATGTC 61.030 60.000 0.00 0.00 35.63 3.06
982 1718 2.360852 GGTCTGGTCCGTCTCCGA 60.361 66.667 0.00 0.00 35.63 4.55
983 1719 2.052690 ATGGTCTGGTCCGTCTCCG 61.053 63.158 0.00 0.00 0.00 4.63
984 1720 1.517832 CATGGTCTGGTCCGTCTCC 59.482 63.158 0.00 0.00 0.00 3.71
1658 2395 4.951963 CGAAGATCTCCGGGGCGC 62.952 72.222 0.00 0.00 0.00 6.53
1814 2551 4.222847 GATCTGTCGGGGGTCGCC 62.223 72.222 0.00 0.00 39.05 5.54
1838 2595 2.050168 ACGGCGAGCGTTTTCGTA 60.050 55.556 16.62 0.00 46.03 3.43
1886 2645 1.303236 CTGCGGAAATCACCACCCA 60.303 57.895 0.00 0.00 0.00 4.51
1967 2726 3.188786 GAGTCCGTGCCGCATGTC 61.189 66.667 11.61 4.66 0.00 3.06
1980 2745 4.730966 TCTATCTACAGGTGGATGGAGTC 58.269 47.826 7.56 0.00 34.23 3.36
2031 2807 1.227999 TTTGCCGGAGAAACAGAGCG 61.228 55.000 5.05 0.00 0.00 5.03
2057 2867 1.961277 CACCGGTGCTTCTGTCCAC 60.961 63.158 24.02 0.00 0.00 4.02
2070 2881 2.669569 CAACTCTGGTGCCACCGG 60.670 66.667 17.02 17.02 46.14 5.28
2077 2888 4.950050 ACTTACTGAACTCAACTCTGGTG 58.050 43.478 0.00 0.00 0.00 4.17
2078 2889 6.069331 TCTACTTACTGAACTCAACTCTGGT 58.931 40.000 0.00 0.00 0.00 4.00
2081 2892 7.179269 AGGATCTACTTACTGAACTCAACTCT 58.821 38.462 0.00 0.00 0.00 3.24
2117 2956 1.213013 CTTCACCAGAGACCCGTCG 59.787 63.158 0.00 0.00 34.09 5.12
2120 2959 1.079543 CAGCTTCACCAGAGACCCG 60.080 63.158 0.00 0.00 0.00 5.28
2148 2987 1.360820 GCTAACTCCGGTGAAAGCTC 58.639 55.000 20.14 1.74 0.00 4.09
2159 2998 3.059352 ACACACATTCAGGCTAACTCC 57.941 47.619 0.00 0.00 0.00 3.85
2366 3238 1.391485 CAGAAGATTGACGGCGAGTTG 59.609 52.381 16.62 0.00 0.00 3.16
2388 3260 2.409064 TGTAAGAGTGTTGGGGGAGA 57.591 50.000 0.00 0.00 0.00 3.71
2391 3263 2.825532 CCATTTGTAAGAGTGTTGGGGG 59.174 50.000 0.00 0.00 0.00 5.40
2394 3266 4.023193 GGTGTCCATTTGTAAGAGTGTTGG 60.023 45.833 0.00 0.00 0.00 3.77
2472 3356 1.133668 ACCAAATCTCCAGCCCTATGC 60.134 52.381 0.00 0.00 41.71 3.14
2475 3359 1.559682 GTCACCAAATCTCCAGCCCTA 59.440 52.381 0.00 0.00 0.00 3.53
2476 3360 0.329596 GTCACCAAATCTCCAGCCCT 59.670 55.000 0.00 0.00 0.00 5.19
2512 3399 0.443478 TTCATTGTCAGCACGCATCG 59.557 50.000 0.00 0.00 0.00 3.84
2525 3412 8.344831 TCAAAAGCGTATCCTATTCATTCATTG 58.655 33.333 0.00 0.00 0.00 2.82
2595 3513 5.063817 CACGGGATACATACATACATGCATG 59.936 44.000 25.09 25.09 37.52 4.06
2599 3520 4.221924 TCCCACGGGATACATACATACATG 59.778 45.833 0.00 0.00 39.76 3.21
2641 3722 1.680338 AGAACCCACAACTTGCAGAC 58.320 50.000 0.00 0.00 0.00 3.51
2649 3730 5.722021 AATGGTGATTAAGAACCCACAAC 57.278 39.130 6.84 0.00 35.44 3.32
2677 3758 3.611113 TGCTTTCAGTTAGATAACGCGAC 59.389 43.478 15.93 0.00 40.96 5.19
2682 3763 9.813080 CAGTAAAAGTGCTTTCAGTTAGATAAC 57.187 33.333 0.00 0.00 34.91 1.89
2686 3807 5.238650 GGCAGTAAAAGTGCTTTCAGTTAGA 59.761 40.000 6.68 0.00 43.82 2.10
2739 3860 4.682787 AGCAAAAGTGTTTTCAGTTAGGC 58.317 39.130 0.00 0.00 41.95 3.93
2759 3880 6.033937 GCAACTCAAGATAAAATTTCGGAAGC 59.966 38.462 0.00 0.00 0.00 3.86
2780 3901 5.164606 TCAGTTTCCGAAGTTAAAGCAAC 57.835 39.130 0.00 0.00 37.41 4.17
2794 3915 3.372060 CGTTTTGAGCCTTTCAGTTTCC 58.628 45.455 0.00 0.00 37.07 3.13
2809 3930 2.807967 TGTCATCAGAGGAAGCGTTTTG 59.192 45.455 0.00 0.00 0.00 2.44
2825 3946 1.196808 GTGCGGTGAAACGAATGTCAT 59.803 47.619 0.00 0.00 38.12 3.06
2826 3947 0.584396 GTGCGGTGAAACGAATGTCA 59.416 50.000 0.00 0.00 38.12 3.58
2828 3949 0.816018 TGGTGCGGTGAAACGAATGT 60.816 50.000 0.00 0.00 38.12 2.71
2829 3950 0.385473 GTGGTGCGGTGAAACGAATG 60.385 55.000 0.00 0.00 38.12 2.67
2830 3951 0.534203 AGTGGTGCGGTGAAACGAAT 60.534 50.000 0.00 0.00 38.12 3.34
2874 3995 3.814504 AGGAGCAAGGATCCTCAAAAA 57.185 42.857 16.52 0.00 46.28 1.94
2890 4011 0.248825 CCGTGAAGATCAGCGAGGAG 60.249 60.000 0.00 0.00 0.00 3.69
2891 4012 1.667154 CCCGTGAAGATCAGCGAGGA 61.667 60.000 0.00 0.00 0.00 3.71
2892 4013 1.227089 CCCGTGAAGATCAGCGAGG 60.227 63.158 0.00 0.00 0.00 4.63
2893 4014 1.880340 GCCCGTGAAGATCAGCGAG 60.880 63.158 0.00 0.00 0.00 5.03
2894 4015 1.960040 ATGCCCGTGAAGATCAGCGA 61.960 55.000 0.00 0.00 0.00 4.93
2895 4016 1.522355 ATGCCCGTGAAGATCAGCG 60.522 57.895 0.00 0.00 0.00 5.18
2896 4017 2.020131 CATGCCCGTGAAGATCAGC 58.980 57.895 0.00 0.00 0.00 4.26
2897 4018 0.745486 TGCATGCCCGTGAAGATCAG 60.745 55.000 16.68 0.00 0.00 2.90
2898 4019 1.026182 GTGCATGCCCGTGAAGATCA 61.026 55.000 16.68 0.00 0.00 2.92
2899 4020 1.026182 TGTGCATGCCCGTGAAGATC 61.026 55.000 16.68 0.00 0.00 2.75
2900 4021 0.394762 ATGTGCATGCCCGTGAAGAT 60.395 50.000 16.68 0.00 0.00 2.40
2901 4022 1.002257 ATGTGCATGCCCGTGAAGA 60.002 52.632 16.68 0.00 0.00 2.87
2902 4023 1.138036 CATGTGCATGCCCGTGAAG 59.862 57.895 16.41 0.00 31.39 3.02
2903 4024 0.680601 ATCATGTGCATGCCCGTGAA 60.681 50.000 25.59 11.83 38.65 3.18
2904 4025 1.077572 ATCATGTGCATGCCCGTGA 60.078 52.632 24.35 24.35 38.65 4.35
2905 4026 1.065109 CATCATGTGCATGCCCGTG 59.935 57.895 16.68 15.97 38.65 4.94
2906 4027 3.516806 CATCATGTGCATGCCCGT 58.483 55.556 16.68 0.96 38.65 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.