Multiple sequence alignment - TraesCS6B01G413100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G413100 chr6B 100.000 8355 0 0 1 8355 686423303 686414949 0.000000e+00 15429.0
1 TraesCS6B01G413100 chr6B 89.044 429 6 11 2669 3075 670020070 670019661 2.090000e-135 494.0
2 TraesCS6B01G413100 chr6B 87.387 444 9 9 2657 3075 528908641 528908220 4.570000e-127 466.0
3 TraesCS6B01G413100 chr6B 87.793 426 11 8 2670 3075 701069121 701069525 2.120000e-125 460.0
4 TraesCS6B01G413100 chr6B 92.933 283 8 2 1107 1383 562774251 562773975 1.310000e-107 401.0
5 TraesCS6B01G413100 chr6B 79.614 466 75 18 3458 3920 686419250 686418802 4.870000e-82 316.0
6 TraesCS6B01G413100 chr6B 79.614 466 75 18 4054 4502 686419846 686419384 4.870000e-82 316.0
7 TraesCS6B01G413100 chr6B 83.051 354 51 7 3082 3428 686419598 686419247 6.300000e-81 313.0
8 TraesCS6B01G413100 chr6B 83.051 354 51 7 3706 4057 686420222 686419876 6.300000e-81 313.0
9 TraesCS6B01G413100 chr6B 95.676 185 6 1 1460 1642 562773956 562773772 6.340000e-76 296.0
10 TraesCS6B01G413100 chr6B 81.890 254 24 10 2430 2664 686419851 686419601 2.380000e-45 195.0
11 TraesCS6B01G413100 chr6B 81.890 254 24 10 3453 3703 686420874 686420640 2.380000e-45 195.0
12 TraesCS6B01G413100 chr6B 83.969 131 16 4 2437 2567 686419248 686419123 4.100000e-23 121.0
13 TraesCS6B01G413100 chr6B 83.969 131 16 4 4056 4181 686420867 686420737 4.100000e-23 121.0
14 TraesCS6B01G413100 chr6B 97.297 37 1 0 5451 5487 663782831 663782867 7.000000e-06 63.9
15 TraesCS6B01G413100 chr6D 95.018 4055 161 30 3453 7471 451911755 451907706 0.000000e+00 6331.0
16 TraesCS6B01G413100 chr6D 87.122 1289 70 34 1460 2668 451912767 451911495 0.000000e+00 1373.0
17 TraesCS6B01G413100 chr6D 89.267 764 29 23 644 1383 451913526 451912792 0.000000e+00 907.0
18 TraesCS6B01G413100 chr6D 80.664 843 33 38 7506 8309 451907380 451906629 1.230000e-147 534.0
19 TraesCS6B01G413100 chr6D 83.904 584 46 23 20 568 451914535 451913965 1.610000e-141 514.0
20 TraesCS6B01G413100 chr6D 80.258 466 73 18 3458 3920 451911148 451910699 4.830000e-87 333.0
21 TraesCS6B01G413100 chr6D 79.193 471 73 20 4054 4502 451911750 451911283 3.790000e-78 303.0
22 TraesCS6B01G413100 chr6D 82.271 361 53 8 3076 3428 451911502 451911145 1.360000e-77 302.0
23 TraesCS6B01G413100 chr6D 85.714 119 12 4 2449 2567 451911134 451911021 4.100000e-23 121.0
24 TraesCS6B01G413100 chr6A 93.360 3464 175 32 4054 7489 597834598 597831162 0.000000e+00 5072.0
25 TraesCS6B01G413100 chr6A 88.636 1716 59 53 587 2230 597837226 597835575 0.000000e+00 1964.0
26 TraesCS6B01G413100 chr6A 88.318 779 37 30 7545 8310 597830716 597829979 0.000000e+00 885.0
27 TraesCS6B01G413100 chr6A 85.332 859 101 24 3076 3926 597834974 597834133 0.000000e+00 865.0
28 TraesCS6B01G413100 chr6A 85.575 617 62 20 3454 4057 597835230 597834628 9.210000e-174 621.0
29 TraesCS6B01G413100 chr6A 87.097 403 26 13 2293 2669 597835368 597834966 4.630000e-117 433.0
30 TraesCS6B01G413100 chr6A 86.427 361 19 18 205 540 597837591 597837236 1.320000e-97 368.0
31 TraesCS6B01G413100 chr6A 78.689 427 74 10 4092 4502 597835181 597834756 1.380000e-67 268.0
32 TraesCS6B01G413100 chr6A 86.822 129 12 3 1 128 597838022 597837898 1.130000e-28 139.0
33 TraesCS6B01G413100 chr4A 92.647 408 16 5 2669 3075 739315002 739315396 7.270000e-160 575.0
34 TraesCS6B01G413100 chr3B 91.408 419 7 8 2670 3075 815963621 815963219 1.590000e-151 547.0
35 TraesCS6B01G413100 chr3B 90.887 406 20 7 2673 3077 821847177 821846788 5.740000e-146 529.0
36 TraesCS6B01G413100 chr3B 88.551 428 11 8 2670 3075 5168017 5168428 1.260000e-132 484.0
37 TraesCS6B01G413100 chr3B 94.624 279 6 2 1108 1383 122393178 122392906 2.790000e-114 424.0
38 TraesCS6B01G413100 chr3B 84.633 436 53 11 5052 5487 14238405 14237984 1.000000e-113 422.0
39 TraesCS6B01G413100 chr3B 92.553 282 9 2 1108 1383 467719111 467719386 2.190000e-105 394.0
40 TraesCS6B01G413100 chr3B 97.297 185 3 1 1460 1642 122392878 122392694 6.300000e-81 313.0
41 TraesCS6B01G413100 chr3B 95.676 185 4 2 1460 1642 467719420 467719602 2.280000e-75 294.0
42 TraesCS6B01G413100 chr3B 87.817 197 20 3 4635 4827 14238672 14238476 2.350000e-55 228.0
43 TraesCS6B01G413100 chr1B 91.505 412 14 8 2666 3075 669802478 669802086 1.590000e-151 547.0
44 TraesCS6B01G413100 chr1B 87.298 433 14 9 2670 3079 116138651 116139065 2.750000e-124 457.0
45 TraesCS6B01G413100 chr2B 89.904 416 17 9 2669 3076 73994198 73993800 5.780000e-141 512.0
46 TraesCS6B01G413100 chr7B 88.941 425 10 9 2672 3076 481348608 481349015 2.710000e-134 490.0
47 TraesCS6B01G413100 chr7B 88.759 427 12 7 2668 3075 741878769 741878360 2.710000e-134 490.0
48 TraesCS6B01G413100 chr7B 87.089 426 13 9 2670 3075 22833014 22833417 2.140000e-120 444.0
49 TraesCS6B01G413100 chr7B 91.197 284 13 3 1106 1383 91101100 91100823 7.920000e-100 375.0
50 TraesCS6B01G413100 chr7B 95.187 187 5 2 1460 1642 91100795 91100609 8.200000e-75 292.0
51 TraesCS6B01G413100 chr5B 88.657 432 8 8 2670 3078 36079064 36079477 9.750000e-134 488.0
52 TraesCS6B01G413100 chr5B 88.235 425 12 9 2672 3075 599185729 599185322 2.730000e-129 473.0
53 TraesCS6B01G413100 chr5B 87.750 400 28 6 2670 3068 545903347 545902968 1.650000e-121 448.0
54 TraesCS6B01G413100 chr5B 87.286 409 27 8 2670 3074 545883635 545883248 2.140000e-120 444.0
55 TraesCS6B01G413100 chr5B 87.500 344 16 10 2669 3000 394015876 394016204 1.020000e-98 372.0
56 TraesCS6B01G413100 chr3D 87.621 412 28 10 2666 3075 48279117 48278727 2.750000e-124 457.0
57 TraesCS6B01G413100 chr5A 85.683 454 21 16 2650 3077 39926937 39927372 9.960000e-119 438.0
58 TraesCS6B01G413100 chr3A 84.404 436 53 11 5052 5487 434426488 434426908 1.680000e-111 414.0
59 TraesCS6B01G413100 chr7A 84.018 438 54 14 5052 5487 691620034 691620457 2.810000e-109 407.0
60 TraesCS6B01G413100 chr7A 85.366 164 20 3 4668 4827 691619800 691619963 5.190000e-37 167.0
61 TraesCS6B01G413100 chr4B 84.286 420 53 11 5068 5487 62875057 62874651 1.690000e-106 398.0
62 TraesCS6B01G413100 chr4B 85.366 123 15 2 4708 4827 62875264 62875142 3.170000e-24 124.0
63 TraesCS6B01G413100 chr1A 83.716 436 56 11 5052 5487 465097112 465096692 1.690000e-106 398.0
64 TraesCS6B01G413100 chr1A 85.714 161 19 3 4671 4827 465097343 465097183 5.190000e-37 167.0
65 TraesCS6B01G413100 chr4D 79.221 231 45 3 7005 7233 497129188 497128959 3.120000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G413100 chr6B 686414949 686423303 8354 True 15429.000000 15429 100.000000 1 8355 1 chr6B.!!$R3 8354
1 TraesCS6B01G413100 chr6B 686418802 686420874 2072 True 236.250000 316 82.131000 2430 4502 8 chr6B.!!$R5 2072
2 TraesCS6B01G413100 chr6D 451906629 451914535 7906 True 1190.888889 6331 84.823444 20 8309 9 chr6D.!!$R1 8289
3 TraesCS6B01G413100 chr6A 597829979 597838022 8043 True 1179.444444 5072 86.695111 1 8310 9 chr6A.!!$R1 8309
4 TraesCS6B01G413100 chr3B 14237984 14238672 688 True 325.000000 422 86.225000 4635 5487 2 chr3B.!!$R3 852
5 TraesCS6B01G413100 chr7A 691619800 691620457 657 False 287.000000 407 84.692000 4668 5487 2 chr7A.!!$F1 819
6 TraesCS6B01G413100 chr4B 62874651 62875264 613 True 261.000000 398 84.826000 4708 5487 2 chr4B.!!$R1 779
7 TraesCS6B01G413100 chr1A 465096692 465097343 651 True 282.500000 398 84.715000 4671 5487 2 chr1A.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1653 0.327191 CCCACCCCACACCTACCTAT 60.327 60.000 0.0 0.0 0.00 2.57 F
1744 2476 0.178918 GGGGTCCTCCTCCTCCATAG 60.179 65.000 0.0 0.0 35.33 2.23 F
1745 2477 0.861155 GGGTCCTCCTCCTCCATAGA 59.139 60.000 0.0 0.0 0.00 1.98 F
4603 5569 0.842030 AAGAGCCCACCACCATCTCA 60.842 55.000 0.0 0.0 0.00 3.27 F
4734 5702 2.029964 GGTGTGACGAAGGCCGAA 59.970 61.111 0.0 0.0 41.76 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2727 0.392193 CCACGCTCCTGCTCTCAAAT 60.392 55.000 0.0 0.0 36.97 2.32 R
4557 5521 2.636403 TCCATATGCCCTCTCTGTCATG 59.364 50.000 0.0 0.0 0.00 3.07 R
4711 5679 3.403057 CTTCGTCACACCACCGCG 61.403 66.667 0.0 0.0 0.00 6.46 R
5498 6494 0.250124 ATTCGGTGCGACAAACTGGA 60.250 50.000 0.0 0.0 34.89 3.86 R
7578 8972 0.254747 GCACACTTATACCAGCCCCA 59.745 55.000 0.0 0.0 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.758089 GCGGGCACATGAAGAGCAG 61.758 63.158 0.00 0.00 35.32 4.24
53 54 4.845580 ATGAAGAGCAGCCCGGCG 62.846 66.667 3.05 0.00 39.27 6.46
66 67 1.883084 CCGGCGTACAATGAGGAGC 60.883 63.158 6.01 0.00 0.00 4.70
137 143 2.032681 GCCGGCAACCTCTCAACT 59.967 61.111 24.80 0.00 0.00 3.16
147 153 4.119862 CAACCTCTCAACTCGAAACAAGA 58.880 43.478 0.00 0.00 0.00 3.02
148 154 4.608948 ACCTCTCAACTCGAAACAAGAT 57.391 40.909 0.00 0.00 0.00 2.40
149 155 5.723672 ACCTCTCAACTCGAAACAAGATA 57.276 39.130 0.00 0.00 0.00 1.98
150 156 6.287589 ACCTCTCAACTCGAAACAAGATAT 57.712 37.500 0.00 0.00 0.00 1.63
151 157 7.406031 ACCTCTCAACTCGAAACAAGATATA 57.594 36.000 0.00 0.00 0.00 0.86
158 164 7.168637 TCAACTCGAAACAAGATATATAACCGC 59.831 37.037 0.00 0.00 0.00 5.68
179 185 5.925969 CCGCAACAAAATAGAAATGAAACCT 59.074 36.000 0.00 0.00 0.00 3.50
226 461 3.365472 AGCCAAGGAACAGAACAAAACT 58.635 40.909 0.00 0.00 0.00 2.66
233 468 5.709966 AGGAACAGAACAAAACTTGTGAAC 58.290 37.500 0.00 0.00 44.59 3.18
254 498 7.166473 GTGAACGAATGAAATGAATAATCTGCC 59.834 37.037 0.00 0.00 0.00 4.85
255 499 6.949352 ACGAATGAAATGAATAATCTGCCT 57.051 33.333 0.00 0.00 0.00 4.75
270 520 4.047059 CCTTTGCCTGCCACTGCG 62.047 66.667 0.00 0.00 41.78 5.18
281 531 0.944311 GCCACTGCGAGAGAAAACGA 60.944 55.000 0.00 0.00 0.00 3.85
292 542 0.949397 AGAAAACGAAAACGGGAGGC 59.051 50.000 0.00 0.00 0.00 4.70
364 616 2.614259 ACAGAGGGCGAGGATGATTAT 58.386 47.619 0.00 0.00 0.00 1.28
393 649 4.117661 GCGCCTCGTCGTCTTCCT 62.118 66.667 0.00 0.00 0.00 3.36
395 651 2.400158 CGCCTCGTCGTCTTCCTCT 61.400 63.158 0.00 0.00 0.00 3.69
468 732 1.156736 CACCATCGACAACTTGACCC 58.843 55.000 0.00 0.00 0.00 4.46
495 759 3.764466 ACCTCGCTTCCTCCGCTG 61.764 66.667 0.00 0.00 0.00 5.18
542 811 4.956075 TCCTTCTTTCCAGCTTTTCTTTGT 59.044 37.500 0.00 0.00 0.00 2.83
556 825 0.460987 CTTTGTAGCTGCCTCCTCCG 60.461 60.000 0.00 0.00 0.00 4.63
557 826 1.899437 TTTGTAGCTGCCTCCTCCGG 61.899 60.000 0.00 0.00 0.00 5.14
558 827 2.760385 GTAGCTGCCTCCTCCGGT 60.760 66.667 0.00 0.00 0.00 5.28
563 832 4.779733 TGCCTCCTCCGGTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
565 834 4.862823 CCTCCTCCGGTCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
566 835 4.862823 CTCCTCCGGTCCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
568 837 4.862823 CCTCCGGTCCTCCCCCTC 62.863 77.778 0.00 0.00 0.00 4.30
569 838 4.862823 CTCCGGTCCTCCCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
627 897 1.443363 GCTTTGCTCGCTGCCTTTC 60.443 57.895 0.00 0.00 42.00 2.62
632 902 3.721706 CTCGCTGCCTTTCCCCCT 61.722 66.667 0.00 0.00 0.00 4.79
633 903 3.689002 CTCGCTGCCTTTCCCCCTC 62.689 68.421 0.00 0.00 0.00 4.30
685 1347 0.926293 CACCTCCTCCCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
686 1348 1.133792 CACCTCCTCCCTCTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
689 1351 2.412591 CTCCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
690 1352 3.587498 CTCCTCCCTCTCTCTCTCTCTA 58.413 54.545 0.00 0.00 0.00 2.43
693 1355 3.716872 CCTCCCTCTCTCTCTCTCTACTT 59.283 52.174 0.00 0.00 0.00 2.24
694 1356 4.202367 CCTCCCTCTCTCTCTCTCTACTTC 60.202 54.167 0.00 0.00 0.00 3.01
695 1357 4.631234 TCCCTCTCTCTCTCTCTACTTCT 58.369 47.826 0.00 0.00 0.00 2.85
696 1358 5.036916 TCCCTCTCTCTCTCTCTACTTCTT 58.963 45.833 0.00 0.00 0.00 2.52
697 1359 5.130477 TCCCTCTCTCTCTCTCTACTTCTTC 59.870 48.000 0.00 0.00 0.00 2.87
698 1360 5.131142 CCCTCTCTCTCTCTCTACTTCTTCT 59.869 48.000 0.00 0.00 0.00 2.85
699 1361 6.284459 CCTCTCTCTCTCTCTACTTCTTCTC 58.716 48.000 0.00 0.00 0.00 2.87
700 1362 6.098982 CCTCTCTCTCTCTCTACTTCTTCTCT 59.901 46.154 0.00 0.00 0.00 3.10
701 1363 7.113658 TCTCTCTCTCTCTACTTCTTCTCTC 57.886 44.000 0.00 0.00 0.00 3.20
825 1487 6.353951 CCCTCCCCTCCATCCATTTATATTAC 60.354 46.154 0.00 0.00 0.00 1.89
828 1490 6.797540 TCCCCTCCATCCATTTATATTACTGT 59.202 38.462 0.00 0.00 0.00 3.55
837 1499 5.182001 CCATTTATATTACTGTCTGCCTGCC 59.818 44.000 0.00 0.00 0.00 4.85
838 1500 5.630415 TTTATATTACTGTCTGCCTGCCT 57.370 39.130 0.00 0.00 0.00 4.75
842 1504 0.614697 TACTGTCTGCCTGCCTGCTA 60.615 55.000 0.00 0.00 0.00 3.49
843 1505 1.153409 CTGTCTGCCTGCCTGCTAG 60.153 63.158 0.00 0.00 0.00 3.42
845 1507 1.449246 GTCTGCCTGCCTGCTAGTG 60.449 63.158 0.00 0.00 0.00 2.74
846 1508 2.823147 CTGCCTGCCTGCTAGTGC 60.823 66.667 0.00 0.00 40.20 4.40
847 1509 3.324930 TGCCTGCCTGCTAGTGCT 61.325 61.111 0.00 0.00 40.48 4.40
849 1511 2.188994 CCTGCCTGCTAGTGCTCC 59.811 66.667 0.00 0.00 40.48 4.70
861 1530 0.901124 AGTGCTCCGCTTCATCTCTT 59.099 50.000 0.00 0.00 0.00 2.85
938 1607 1.576356 CCGCTAGCTTGGCTTCTAAG 58.424 55.000 13.93 0.00 40.44 2.18
939 1608 1.134670 CCGCTAGCTTGGCTTCTAAGT 60.135 52.381 13.93 0.00 40.44 2.24
940 1609 2.622436 CGCTAGCTTGGCTTCTAAGTT 58.378 47.619 13.93 0.00 40.44 2.66
941 1610 2.605366 CGCTAGCTTGGCTTCTAAGTTC 59.395 50.000 13.93 0.00 40.44 3.01
942 1611 3.677424 CGCTAGCTTGGCTTCTAAGTTCT 60.677 47.826 13.93 0.00 40.44 3.01
943 1612 3.620821 GCTAGCTTGGCTTCTAAGTTCTG 59.379 47.826 7.70 0.00 40.44 3.02
944 1613 4.621747 GCTAGCTTGGCTTCTAAGTTCTGA 60.622 45.833 7.70 0.00 40.44 3.27
945 1614 3.936564 AGCTTGGCTTCTAAGTTCTGAG 58.063 45.455 0.00 0.00 33.89 3.35
973 1642 2.531685 CCCTTCTCACCCACCCCA 60.532 66.667 0.00 0.00 0.00 4.96
984 1653 0.327191 CCCACCCCACACCTACCTAT 60.327 60.000 0.00 0.00 0.00 2.57
1045 1728 1.684450 TGACTTGAAGTGGTGCGTAGA 59.316 47.619 0.90 0.00 0.00 2.59
1055 1738 1.134340 TGGTGCGTAGAAGTTGGTTGT 60.134 47.619 0.00 0.00 0.00 3.32
1057 1740 2.286772 GGTGCGTAGAAGTTGGTTGTTG 60.287 50.000 0.00 0.00 0.00 3.33
1059 1742 1.944709 GCGTAGAAGTTGGTTGTTGGT 59.055 47.619 0.00 0.00 0.00 3.67
1139 1827 2.577112 CTCTGCGTCTACGTGCCG 60.577 66.667 0.00 0.00 42.22 5.69
1373 2070 1.002087 AGCAAGTCCTTCAAGGTACCG 59.998 52.381 6.18 0.00 36.53 4.02
1397 2108 4.326826 CACCACCATGTCTTCTGTAACAT 58.673 43.478 0.00 0.00 36.56 2.71
1399 2110 5.937540 CACCACCATGTCTTCTGTAACATAA 59.062 40.000 0.00 0.00 34.42 1.90
1400 2111 5.938125 ACCACCATGTCTTCTGTAACATAAC 59.062 40.000 0.00 0.00 34.42 1.89
1401 2112 5.937540 CCACCATGTCTTCTGTAACATAACA 59.062 40.000 0.00 0.00 34.42 2.41
1403 2114 7.121168 CCACCATGTCTTCTGTAACATAACATT 59.879 37.037 0.00 0.00 34.42 2.71
1404 2115 7.964559 CACCATGTCTTCTGTAACATAACATTG 59.035 37.037 0.00 0.00 34.42 2.82
1431 2146 3.930634 AAGAACTTGCTGCAAAGATCC 57.069 42.857 16.74 4.47 31.25 3.36
1435 2150 3.083122 ACTTGCTGCAAAGATCCATCT 57.917 42.857 16.74 0.00 39.22 2.90
1454 2169 9.895507 ATCCATCTATCTATCTATTACCATGCT 57.104 33.333 0.00 0.00 0.00 3.79
1455 2170 9.360901 TCCATCTATCTATCTATTACCATGCTC 57.639 37.037 0.00 0.00 0.00 4.26
1456 2171 9.365906 CCATCTATCTATCTATTACCATGCTCT 57.634 37.037 0.00 0.00 0.00 4.09
1510 2225 5.966742 AAGCTCTAATCCCTCACAAAAAC 57.033 39.130 0.00 0.00 0.00 2.43
1516 2231 7.822822 GCTCTAATCCCTCACAAAAACTACTTA 59.177 37.037 0.00 0.00 0.00 2.24
1597 2321 6.310197 CAAGTAGCTTTCTTCCATTCTTTCG 58.690 40.000 0.00 0.00 0.00 3.46
1643 2371 0.615850 GAAGAACACAGGAGGAGGGG 59.384 60.000 0.00 0.00 0.00 4.79
1663 2391 1.916181 GGGGAAAGGAGGAGAATGTGA 59.084 52.381 0.00 0.00 0.00 3.58
1741 2473 2.874245 TGGGGTCCTCCTCCTCCA 60.874 66.667 0.00 0.00 32.02 3.86
1742 2474 2.263099 CTGGGGTCCTCCTCCTCCAT 62.263 65.000 0.00 0.00 32.02 3.41
1743 2475 0.934302 TGGGGTCCTCCTCCTCCATA 60.934 60.000 0.00 0.00 32.02 2.74
1744 2476 0.178918 GGGGTCCTCCTCCTCCATAG 60.179 65.000 0.00 0.00 35.33 2.23
1745 2477 0.861155 GGGTCCTCCTCCTCCATAGA 59.139 60.000 0.00 0.00 0.00 1.98
1746 2478 1.435168 GGGTCCTCCTCCTCCATAGAT 59.565 57.143 0.00 0.00 0.00 1.98
1747 2479 2.534990 GGTCCTCCTCCTCCATAGATG 58.465 57.143 0.00 0.00 0.00 2.90
1796 2552 4.425772 TCATCACTCACCTTTTCCTCCTA 58.574 43.478 0.00 0.00 0.00 2.94
1797 2553 4.467795 TCATCACTCACCTTTTCCTCCTAG 59.532 45.833 0.00 0.00 0.00 3.02
1870 2630 3.265791 CATAAAGAGGAGGCAGTGACAC 58.734 50.000 0.00 0.00 0.00 3.67
1951 2711 1.680735 TGCATTCTTCCAACACACACC 59.319 47.619 0.00 0.00 0.00 4.16
1952 2712 1.334960 GCATTCTTCCAACACACACCG 60.335 52.381 0.00 0.00 0.00 4.94
1954 2714 1.098712 TTCTTCCAACACACACCGGC 61.099 55.000 0.00 0.00 0.00 6.13
1955 2715 1.821759 CTTCCAACACACACCGGCA 60.822 57.895 0.00 0.00 0.00 5.69
1956 2716 1.378646 TTCCAACACACACCGGCAA 60.379 52.632 0.00 0.00 0.00 4.52
1957 2717 0.965866 TTCCAACACACACCGGCAAA 60.966 50.000 0.00 0.00 0.00 3.68
1958 2718 0.965866 TCCAACACACACCGGCAAAA 60.966 50.000 0.00 0.00 0.00 2.44
1982 2742 2.157738 ACAACATTTGAGAGCAGGAGC 58.842 47.619 0.00 0.00 42.56 4.70
2113 2873 3.382855 TGCAAATTGTTTAGCTGCAGTG 58.617 40.909 16.64 2.30 38.06 3.66
2147 2928 4.065789 GTTGCAGTATCCCTAGTTATGCC 58.934 47.826 0.00 0.00 0.00 4.40
2176 2957 1.062525 GAATCAATGACGTGGCGCC 59.937 57.895 22.73 22.73 0.00 6.53
2222 3003 6.350103 TGGTTTAGGTTTGGGTTTTCAAATC 58.650 36.000 0.00 0.00 38.64 2.17
2268 3049 4.207891 TCTTCTTCCTGGTCTTACATGC 57.792 45.455 0.00 0.00 0.00 4.06
2270 3051 3.895232 TCTTCCTGGTCTTACATGCTC 57.105 47.619 0.00 0.00 0.00 4.26
2283 3064 5.827797 TCTTACATGCTCAGGTGTTTTCTTT 59.172 36.000 0.00 0.00 0.00 2.52
2284 3065 6.995686 TCTTACATGCTCAGGTGTTTTCTTTA 59.004 34.615 0.00 0.00 0.00 1.85
2421 3348 5.275630 TGGATTCTCATCTCTCTTTGGAGA 58.724 41.667 0.00 0.00 45.30 3.71
4557 5521 6.405538 TGCATTCTTTCATGTAATTTTCCCC 58.594 36.000 0.00 0.00 0.00 4.81
4603 5569 0.842030 AAGAGCCCACCACCATCTCA 60.842 55.000 0.00 0.00 0.00 3.27
4734 5702 2.029964 GGTGTGACGAAGGCCGAA 59.970 61.111 0.00 0.00 41.76 4.30
4806 5777 6.789457 TGATCTTCTGGTCATATAAGGGTGAT 59.211 38.462 0.00 0.00 0.00 3.06
4818 5789 8.278639 TCATATAAGGGTGATGTGTATTGGTTT 58.721 33.333 0.00 0.00 0.00 3.27
4839 5810 9.642327 TGGTTTGTCATCAATGAATTATTCAAG 57.358 29.630 11.88 7.90 43.95 3.02
4859 5830 5.248477 TCAAGTTAAGGCACCTAGATCACTT 59.752 40.000 0.00 0.00 0.00 3.16
4860 5831 5.091261 AGTTAAGGCACCTAGATCACTTG 57.909 43.478 0.00 0.00 0.00 3.16
4877 5848 9.836864 AGATCACTTGCATAATGTTAGATTACA 57.163 29.630 0.00 0.00 0.00 2.41
4887 5858 6.790232 AATGTTAGATTACAACCCCATTGG 57.210 37.500 0.00 0.00 43.20 3.16
4894 5865 9.548631 TTAGATTACAACCCCATTGGAAATTAA 57.451 29.630 3.62 0.00 44.57 1.40
4936 5907 4.835284 TGCCACATGACTATACCTTGAA 57.165 40.909 0.00 0.00 0.00 2.69
5015 5987 6.945435 TGTTTGTTTATTCTGATGGAAGCCTA 59.055 34.615 0.00 0.00 37.36 3.93
5023 5995 4.985538 TCTGATGGAAGCCTAAAACTGTT 58.014 39.130 0.00 0.00 0.00 3.16
5029 6001 7.940137 TGATGGAAGCCTAAAACTGTTAAACTA 59.060 33.333 0.00 0.00 0.00 2.24
5059 6043 6.829229 TTAGAGAGAAAGGTCGACAATACA 57.171 37.500 18.91 0.00 0.00 2.29
5062 6046 6.702329 AGAGAGAAAGGTCGACAATACAAAT 58.298 36.000 18.91 0.00 0.00 2.32
5063 6047 6.591834 AGAGAGAAAGGTCGACAATACAAATG 59.408 38.462 18.91 0.00 0.00 2.32
5066 6050 7.545965 AGAGAAAGGTCGACAATACAAATGTAG 59.454 37.037 18.91 0.00 33.52 2.74
5313 6304 6.152661 TGAAAAACGCTTTCCCAGATTCATAT 59.847 34.615 7.82 0.00 0.00 1.78
5498 6494 3.756933 AAGCATGGAAGCAACAATTGT 57.243 38.095 4.92 4.92 36.85 2.71
5618 6614 2.211619 AAAATGGCGGCCACATGACG 62.212 55.000 26.48 0.00 35.80 4.35
5690 6686 2.166829 ACTTGTTTGTTGCCTGACACA 58.833 42.857 0.00 0.00 0.00 3.72
5921 6917 3.530910 AAACACTGGTCGAGCCCCG 62.531 63.158 12.85 3.17 40.25 5.73
5936 6932 1.134220 GCCCCGGTTGATCTTATCACA 60.134 52.381 0.00 0.00 39.39 3.58
6272 7268 4.759782 ACACATATACAGTCTCACCAAGC 58.240 43.478 0.00 0.00 0.00 4.01
6275 7271 2.370281 ATACAGTCTCACCAAGCACG 57.630 50.000 0.00 0.00 0.00 5.34
6312 7308 1.717032 TACAGTCTCACCAACTGCCT 58.283 50.000 3.30 0.00 46.48 4.75
6389 7385 2.028112 TCAGCAGGTACCAGTTCATGTC 60.028 50.000 15.94 0.00 0.00 3.06
6473 7469 3.307242 GGACCTTTTCATTCATCGAGACG 59.693 47.826 0.00 0.00 0.00 4.18
6497 7493 2.555757 GGCTACCATCCAAGATGCATTC 59.444 50.000 0.00 0.00 0.00 2.67
6500 7496 0.313043 CCATCCAAGATGCATTCGCC 59.687 55.000 0.00 0.00 37.32 5.54
6542 7538 0.238289 GTGTGGTCGCACAGGATTTG 59.762 55.000 9.48 0.00 39.07 2.32
6599 7595 3.331889 ACTTTGGTTCCATCAGATCAGGT 59.668 43.478 0.00 0.00 0.00 4.00
6686 7682 4.397730 GCTGAAGAGGAAAGGGATTTTCTC 59.602 45.833 1.47 1.47 43.81 2.87
6710 7706 0.955919 CTCTGAACGTTCCCCAAGGC 60.956 60.000 24.78 0.00 0.00 4.35
6809 7805 1.830477 GAGGTGCAGGTGAAGATCTCT 59.170 52.381 0.00 0.00 0.00 3.10
6815 7811 2.676748 CAGGTGAAGATCTCTAGGCCT 58.323 52.381 11.78 11.78 0.00 5.19
6818 7814 1.035923 TGAAGATCTCTAGGCCTGCG 58.964 55.000 17.99 6.52 0.00 5.18
6977 7973 1.696336 CGGAGAATGATCATGGGGTCT 59.304 52.381 9.46 8.17 0.00 3.85
7217 8213 2.646175 GGTACTGCGCTCCCAGACA 61.646 63.158 9.73 0.00 36.67 3.41
7250 8246 3.501040 GACCCCGAAGCAAACCCCA 62.501 63.158 0.00 0.00 0.00 4.96
7312 8308 4.186926 CCTAGGTAGGTAAAAGAAACCGC 58.813 47.826 0.00 0.00 42.15 5.68
7314 8310 1.129251 GGTAGGTAAAAGAAACCGCGC 59.871 52.381 0.00 0.00 42.15 6.86
7489 8493 5.248248 AGGAGATGTAAATTTGTTTTGGGGG 59.752 40.000 0.00 0.00 0.00 5.40
7490 8494 4.905429 AGATGTAAATTTGTTTTGGGGGC 58.095 39.130 0.00 0.00 0.00 5.80
7491 8495 4.597075 AGATGTAAATTTGTTTTGGGGGCT 59.403 37.500 0.00 0.00 0.00 5.19
7492 8496 4.078639 TGTAAATTTGTTTTGGGGGCTG 57.921 40.909 0.00 0.00 0.00 4.85
7493 8497 2.655090 AAATTTGTTTTGGGGGCTGG 57.345 45.000 0.00 0.00 0.00 4.85
7494 8498 1.517238 AATTTGTTTTGGGGGCTGGT 58.483 45.000 0.00 0.00 0.00 4.00
7495 8499 0.764271 ATTTGTTTTGGGGGCTGGTG 59.236 50.000 0.00 0.00 0.00 4.17
7496 8500 1.341156 TTTGTTTTGGGGGCTGGTGG 61.341 55.000 0.00 0.00 0.00 4.61
7497 8501 2.123033 GTTTTGGGGGCTGGTGGT 60.123 61.111 0.00 0.00 0.00 4.16
7498 8502 2.123077 TTTTGGGGGCTGGTGGTG 60.123 61.111 0.00 0.00 0.00 4.17
7499 8503 3.765257 TTTTGGGGGCTGGTGGTGG 62.765 63.158 0.00 0.00 0.00 4.61
7504 8508 4.974721 GGGCTGGTGGTGGTGGTG 62.975 72.222 0.00 0.00 0.00 4.17
7511 8806 4.845307 TGGTGGTGGTGGGGGTGA 62.845 66.667 0.00 0.00 0.00 4.02
7524 8819 1.151413 GGGGGTGAGGGTATATGGAGA 59.849 57.143 0.00 0.00 0.00 3.71
7571 8965 5.498393 TCTGTACTGTAGTGGGTTAGAGAG 58.502 45.833 0.00 0.00 0.00 3.20
7612 9006 1.229177 GTGCTGGGGGAAAATGGGT 60.229 57.895 0.00 0.00 0.00 4.51
7642 9036 1.680338 GGAAGAAGGTGTTGTGCTGT 58.320 50.000 0.00 0.00 0.00 4.40
7643 9037 1.334869 GGAAGAAGGTGTTGTGCTGTG 59.665 52.381 0.00 0.00 0.00 3.66
7644 9038 0.740737 AAGAAGGTGTTGTGCTGTGC 59.259 50.000 0.00 0.00 0.00 4.57
7645 9039 0.107017 AGAAGGTGTTGTGCTGTGCT 60.107 50.000 0.00 0.00 0.00 4.40
7646 9040 0.029834 GAAGGTGTTGTGCTGTGCTG 59.970 55.000 0.00 0.00 0.00 4.41
7647 9041 0.680921 AAGGTGTTGTGCTGTGCTGT 60.681 50.000 0.00 0.00 0.00 4.40
7648 9042 1.064621 GGTGTTGTGCTGTGCTGTG 59.935 57.895 0.00 0.00 0.00 3.66
7649 9043 1.587088 GTGTTGTGCTGTGCTGTGC 60.587 57.895 0.00 0.00 0.00 4.57
7650 9044 1.750018 TGTTGTGCTGTGCTGTGCT 60.750 52.632 0.00 0.00 0.00 4.40
7651 9045 1.298863 GTTGTGCTGTGCTGTGCTG 60.299 57.895 0.00 0.00 0.00 4.41
7732 9130 1.750682 GCTCTCCTTTGTGTGGTGGTT 60.751 52.381 0.00 0.00 0.00 3.67
7733 9131 1.949525 CTCTCCTTTGTGTGGTGGTTG 59.050 52.381 0.00 0.00 0.00 3.77
7734 9132 0.385390 CTCCTTTGTGTGGTGGTTGC 59.615 55.000 0.00 0.00 0.00 4.17
7735 9133 0.033601 TCCTTTGTGTGGTGGTTGCT 60.034 50.000 0.00 0.00 0.00 3.91
7736 9134 0.102844 CCTTTGTGTGGTGGTTGCTG 59.897 55.000 0.00 0.00 0.00 4.41
7737 9135 0.102844 CTTTGTGTGGTGGTTGCTGG 59.897 55.000 0.00 0.00 0.00 4.85
7738 9136 1.326213 TTTGTGTGGTGGTTGCTGGG 61.326 55.000 0.00 0.00 0.00 4.45
7851 9250 2.504367 TCTTTGTTGCAAGGCTAGTCC 58.496 47.619 0.00 0.00 0.00 3.85
7864 9265 0.471617 CTAGTCCAATCTGCCCCTGG 59.528 60.000 0.00 0.00 0.00 4.45
7887 9288 5.510520 GGGTCTGAACATGGTTAATTTGCAA 60.511 40.000 0.00 0.00 0.00 4.08
7931 9357 5.593183 GTACTTCAGTACTTTGGCAGTTC 57.407 43.478 9.50 0.00 45.47 3.01
7932 9358 4.423625 ACTTCAGTACTTTGGCAGTTCT 57.576 40.909 0.00 0.00 36.88 3.01
7933 9359 4.381411 ACTTCAGTACTTTGGCAGTTCTC 58.619 43.478 0.00 0.00 36.88 2.87
7971 9410 4.966787 TTGGAGGCGTTGGTGGGC 62.967 66.667 0.00 0.00 0.00 5.36
7997 9440 1.016627 TGCTACTGATTTCGCATGCC 58.983 50.000 13.15 0.00 0.00 4.40
8020 9463 0.665670 CGCGTATGGAGATGAGCTGG 60.666 60.000 0.00 0.00 0.00 4.85
8054 9497 5.364778 TCACATATTTTCACATACCTCGGG 58.635 41.667 0.00 0.00 0.00 5.14
8071 9514 1.106285 GGGTGAATCTGTTGGATGGC 58.894 55.000 0.00 0.00 34.45 4.40
8079 9522 2.327002 CTGTTGGATGGCGGCGATTG 62.327 60.000 12.98 0.00 0.00 2.67
8080 9523 3.517140 TTGGATGGCGGCGATTGC 61.517 61.111 12.98 0.00 41.71 3.56
8081 9524 3.993614 TTGGATGGCGGCGATTGCT 62.994 57.895 12.98 0.00 42.25 3.91
8082 9525 3.654020 GGATGGCGGCGATTGCTC 61.654 66.667 12.98 0.00 42.25 4.26
8084 9527 4.838152 ATGGCGGCGATTGCTCGT 62.838 61.111 12.98 1.42 46.71 4.18
8089 9532 3.607987 GGCGATTGCTCGTCGACG 61.608 66.667 31.30 31.30 46.71 5.12
8112 9555 0.027716 CGTCGTGTCTCGGTATCTGG 59.972 60.000 0.00 0.00 40.32 3.86
8120 9563 1.012086 CTCGGTATCTGGAACGACGA 58.988 55.000 0.00 0.00 0.00 4.20
8234 9677 4.828925 GAGGAGGCTGCTGCGGTC 62.829 72.222 15.18 4.57 40.82 4.79
8291 9734 5.011090 TGAGGAAGGACGATACTGATTTG 57.989 43.478 0.00 0.00 0.00 2.32
8325 9768 2.499685 GGGAACGCGGCTCTGTAT 59.500 61.111 12.47 0.00 0.00 2.29
8326 9769 1.883084 GGGAACGCGGCTCTGTATG 60.883 63.158 12.47 0.00 0.00 2.39
8327 9770 1.141019 GGAACGCGGCTCTGTATGA 59.859 57.895 12.47 0.00 0.00 2.15
8328 9771 0.459585 GGAACGCGGCTCTGTATGAA 60.460 55.000 12.47 0.00 0.00 2.57
8329 9772 1.571919 GAACGCGGCTCTGTATGAAT 58.428 50.000 12.47 0.00 0.00 2.57
8330 9773 1.933853 GAACGCGGCTCTGTATGAATT 59.066 47.619 12.47 0.00 0.00 2.17
8331 9774 2.024176 ACGCGGCTCTGTATGAATTT 57.976 45.000 12.47 0.00 0.00 1.82
8332 9775 1.665679 ACGCGGCTCTGTATGAATTTG 59.334 47.619 12.47 0.00 0.00 2.32
8333 9776 1.003545 CGCGGCTCTGTATGAATTTGG 60.004 52.381 0.00 0.00 0.00 3.28
8334 9777 1.334869 GCGGCTCTGTATGAATTTGGG 59.665 52.381 0.00 0.00 0.00 4.12
8335 9778 1.334869 CGGCTCTGTATGAATTTGGGC 59.665 52.381 0.00 0.00 0.00 5.36
8336 9779 1.683385 GGCTCTGTATGAATTTGGGCC 59.317 52.381 0.00 0.00 0.00 5.80
8337 9780 2.659428 GCTCTGTATGAATTTGGGCCT 58.341 47.619 4.53 0.00 0.00 5.19
8338 9781 2.360165 GCTCTGTATGAATTTGGGCCTG 59.640 50.000 4.53 0.00 0.00 4.85
8339 9782 2.954318 CTCTGTATGAATTTGGGCCTGG 59.046 50.000 4.53 0.00 0.00 4.45
8340 9783 2.034124 CTGTATGAATTTGGGCCTGGG 58.966 52.381 4.53 0.00 0.00 4.45
8341 9784 0.752658 GTATGAATTTGGGCCTGGGC 59.247 55.000 12.58 12.58 41.06 5.36
8342 9785 0.636101 TATGAATTTGGGCCTGGGCT 59.364 50.000 20.47 0.00 41.60 5.19
8343 9786 0.252835 ATGAATTTGGGCCTGGGCTT 60.253 50.000 20.47 6.18 41.60 4.35
8344 9787 0.904394 TGAATTTGGGCCTGGGCTTC 60.904 55.000 20.47 15.38 41.60 3.86
8345 9788 1.613332 AATTTGGGCCTGGGCTTCC 60.613 57.895 20.47 6.92 41.60 3.46
8346 9789 2.110782 AATTTGGGCCTGGGCTTCCT 62.111 55.000 20.47 0.27 41.60 3.36
8347 9790 2.520657 ATTTGGGCCTGGGCTTCCTC 62.521 60.000 20.47 3.28 41.60 3.71
8348 9791 4.682714 TGGGCCTGGGCTTCCTCT 62.683 66.667 20.47 0.00 41.60 3.69
8349 9792 2.366972 GGGCCTGGGCTTCCTCTA 60.367 66.667 20.47 0.00 41.60 2.43
8350 9793 2.447714 GGGCCTGGGCTTCCTCTAG 61.448 68.421 20.47 0.00 41.60 2.43
8351 9794 2.447714 GGCCTGGGCTTCCTCTAGG 61.448 68.421 13.80 0.00 41.60 3.02
8352 9795 3.113514 GCCTGGGCTTCCTCTAGGC 62.114 68.421 4.12 2.89 46.04 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.885196 CCACTAGCCGCTATCTCCTC 59.115 60.000 0.00 0.00 0.00 3.71
6 7 0.315568 CCACCACTAGCCGCTATCTC 59.684 60.000 0.00 0.00 0.00 2.75
9 10 2.822399 GCCACCACTAGCCGCTAT 59.178 61.111 0.00 0.00 0.00 2.97
27 28 3.512516 GCTCTTCATGTGCCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
41 42 4.752879 TTGTACGCCGGGCTGCTC 62.753 66.667 18.34 5.51 0.00 4.26
46 47 2.895372 CCTCATTGTACGCCGGGC 60.895 66.667 9.54 9.54 0.00 6.13
53 54 3.302480 CGCATTTACGCTCCTCATTGTAC 60.302 47.826 0.00 0.00 0.00 2.90
66 67 1.800032 ATGGGCACACGCATTTACG 59.200 52.632 0.00 0.00 46.48 3.18
120 122 2.032681 AGTTGAGAGGTTGCCGGC 59.967 61.111 22.73 22.73 0.00 6.13
137 143 6.757478 TGTTGCGGTTATATATCTTGTTTCGA 59.243 34.615 0.00 0.00 0.00 3.71
151 157 8.921670 GTTTCATTTCTATTTTGTTGCGGTTAT 58.078 29.630 0.00 0.00 0.00 1.89
188 382 8.740123 TCCTTGGCTTGATATATAACGAAAAA 57.260 30.769 0.00 0.00 0.00 1.94
193 387 6.929049 TCTGTTCCTTGGCTTGATATATAACG 59.071 38.462 0.00 0.00 0.00 3.18
201 395 3.228188 TGTTCTGTTCCTTGGCTTGAT 57.772 42.857 0.00 0.00 0.00 2.57
202 396 2.727123 TGTTCTGTTCCTTGGCTTGA 57.273 45.000 0.00 0.00 0.00 3.02
203 397 3.799281 TTTGTTCTGTTCCTTGGCTTG 57.201 42.857 0.00 0.00 0.00 4.01
226 461 9.558648 CAGATTATTCATTTCATTCGTTCACAA 57.441 29.630 0.00 0.00 0.00 3.33
233 468 7.306399 GCAAAGGCAGATTATTCATTTCATTCG 60.306 37.037 0.00 0.00 40.72 3.34
254 498 2.974489 CTCGCAGTGGCAGGCAAAG 61.974 63.158 11.13 0.00 41.24 2.77
255 499 2.979676 CTCGCAGTGGCAGGCAAA 60.980 61.111 11.13 0.00 41.24 3.68
270 520 2.479275 CCTCCCGTTTTCGTTTTCTCTC 59.521 50.000 0.00 0.00 42.35 3.20
302 552 1.443194 ACGACACGACATGTACGCC 60.443 57.895 14.78 6.49 43.56 5.68
364 616 0.250124 CGAGGCGCCCCATGTAATAA 60.250 55.000 26.15 0.00 0.00 1.40
440 700 2.094659 GTCGATGGTGGTGCGTGAG 61.095 63.158 0.00 0.00 0.00 3.51
495 759 1.954362 ATGGCGAGGACTGAGTGAGC 61.954 60.000 0.00 0.00 0.00 4.26
585 854 3.249189 GGGCACAGTCCACAGGGA 61.249 66.667 0.00 0.00 42.29 4.20
627 897 0.692756 GAAAGAGGAGAGGGAGGGGG 60.693 65.000 0.00 0.00 0.00 5.40
632 902 4.019231 GCCTTTTAAGAAAGAGGAGAGGGA 60.019 45.833 0.70 0.00 44.03 4.20
633 903 4.018870 AGCCTTTTAAGAAAGAGGAGAGGG 60.019 45.833 0.70 0.00 44.03 4.30
685 1347 6.897966 AGAGAGAGAGAGAGAAGAAGTAGAGA 59.102 42.308 0.00 0.00 0.00 3.10
686 1348 7.069331 AGAGAGAGAGAGAGAGAAGAAGTAGAG 59.931 44.444 0.00 0.00 0.00 2.43
689 1351 6.630413 GCAGAGAGAGAGAGAGAGAAGAAGTA 60.630 46.154 0.00 0.00 0.00 2.24
690 1352 5.738909 CAGAGAGAGAGAGAGAGAAGAAGT 58.261 45.833 0.00 0.00 0.00 3.01
693 1355 3.118261 GGCAGAGAGAGAGAGAGAGAAGA 60.118 52.174 0.00 0.00 0.00 2.87
694 1356 3.118112 AGGCAGAGAGAGAGAGAGAGAAG 60.118 52.174 0.00 0.00 0.00 2.85
695 1357 2.846206 AGGCAGAGAGAGAGAGAGAGAA 59.154 50.000 0.00 0.00 0.00 2.87
696 1358 2.481441 AGGCAGAGAGAGAGAGAGAGA 58.519 52.381 0.00 0.00 0.00 3.10
697 1359 2.947652 CAAGGCAGAGAGAGAGAGAGAG 59.052 54.545 0.00 0.00 0.00 3.20
698 1360 2.357050 CCAAGGCAGAGAGAGAGAGAGA 60.357 54.545 0.00 0.00 0.00 3.10
699 1361 2.026641 CCAAGGCAGAGAGAGAGAGAG 58.973 57.143 0.00 0.00 0.00 3.20
700 1362 1.959508 GCCAAGGCAGAGAGAGAGAGA 60.960 57.143 6.14 0.00 41.49 3.10
701 1363 0.461135 GCCAAGGCAGAGAGAGAGAG 59.539 60.000 6.14 0.00 41.49 3.20
825 1487 1.153409 CTAGCAGGCAGGCAGACAG 60.153 63.158 0.00 0.00 35.83 3.51
828 1490 2.984623 CACTAGCAGGCAGGCAGA 59.015 61.111 0.00 0.00 35.83 4.26
846 1508 0.105778 GGGGAAGAGATGAAGCGGAG 59.894 60.000 0.00 0.00 0.00 4.63
847 1509 0.617535 TGGGGAAGAGATGAAGCGGA 60.618 55.000 0.00 0.00 0.00 5.54
849 1511 1.590932 CATGGGGAAGAGATGAAGCG 58.409 55.000 0.00 0.00 0.00 4.68
903 1572 4.103103 GGCGCTTTTGCTCCGTCC 62.103 66.667 7.64 0.00 40.78 4.79
923 1592 4.081420 CCTCAGAACTTAGAAGCCAAGCTA 60.081 45.833 0.00 0.00 38.25 3.32
936 1605 2.022718 AGGTCAGAGCCTCAGAACTT 57.977 50.000 0.00 0.00 32.39 2.66
944 1613 0.325203 GAGAAGGGAGGTCAGAGCCT 60.325 60.000 0.00 0.00 42.53 4.58
945 1614 0.616111 TGAGAAGGGAGGTCAGAGCC 60.616 60.000 0.00 0.00 0.00 4.70
957 1626 2.153401 TGTGGGGTGGGTGAGAAGG 61.153 63.158 0.00 0.00 0.00 3.46
973 1642 4.948621 GTGACTGTACTGATAGGTAGGTGT 59.051 45.833 6.77 0.00 0.00 4.16
1045 1728 0.459411 GCGCAACCAACAACCAACTT 60.459 50.000 0.30 0.00 0.00 2.66
1055 1738 3.589654 CTCCTCTCCGCGCAACCAA 62.590 63.158 8.75 0.00 0.00 3.67
1220 1917 3.082579 GCTGGTGGCGTAGGAGGAG 62.083 68.421 0.00 0.00 0.00 3.69
1221 1918 3.075005 GCTGGTGGCGTAGGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
1373 2070 0.250901 ACAGAAGACATGGTGGTGGC 60.251 55.000 0.00 0.00 0.00 5.01
1409 2124 4.099881 TGGATCTTTGCAGCAAGTTCTTTT 59.900 37.500 8.12 0.00 0.00 2.27
1446 2161 7.930325 CAGAGATAAATCAAGAAGAGCATGGTA 59.070 37.037 0.00 0.00 0.00 3.25
1447 2162 6.766944 CAGAGATAAATCAAGAAGAGCATGGT 59.233 38.462 0.00 0.00 0.00 3.55
1448 2163 6.293516 GCAGAGATAAATCAAGAAGAGCATGG 60.294 42.308 0.00 0.00 0.00 3.66
1449 2164 6.483974 AGCAGAGATAAATCAAGAAGAGCATG 59.516 38.462 0.00 0.00 0.00 4.06
1450 2165 6.593807 AGCAGAGATAAATCAAGAAGAGCAT 58.406 36.000 0.00 0.00 0.00 3.79
1451 2166 5.987098 AGCAGAGATAAATCAAGAAGAGCA 58.013 37.500 0.00 0.00 0.00 4.26
1452 2167 6.923928 AAGCAGAGATAAATCAAGAAGAGC 57.076 37.500 0.00 0.00 0.00 4.09
1453 2168 8.721019 AGAAAGCAGAGATAAATCAAGAAGAG 57.279 34.615 0.00 0.00 0.00 2.85
1454 2169 8.316946 TGAGAAAGCAGAGATAAATCAAGAAGA 58.683 33.333 0.00 0.00 0.00 2.87
1455 2170 8.489990 TGAGAAAGCAGAGATAAATCAAGAAG 57.510 34.615 0.00 0.00 0.00 2.85
1456 2171 8.099537 ACTGAGAAAGCAGAGATAAATCAAGAA 58.900 33.333 0.00 0.00 39.20 2.52
1457 2172 7.619050 ACTGAGAAAGCAGAGATAAATCAAGA 58.381 34.615 0.00 0.00 39.20 3.02
1458 2173 7.846644 ACTGAGAAAGCAGAGATAAATCAAG 57.153 36.000 0.00 0.00 39.20 3.02
1510 2225 7.040409 ACAACCTGAATCCAAGCTTTTAAGTAG 60.040 37.037 0.00 0.00 0.00 2.57
1516 2231 4.892934 TGTACAACCTGAATCCAAGCTTTT 59.107 37.500 0.00 0.00 0.00 2.27
1597 2321 0.167033 TTTGTGCGTGTGTGTGTGTC 59.833 50.000 0.00 0.00 0.00 3.67
1643 2371 1.916181 TCACATTCTCCTCCTTTCCCC 59.084 52.381 0.00 0.00 0.00 4.81
1646 2374 2.092699 CCCCTCACATTCTCCTCCTTTC 60.093 54.545 0.00 0.00 0.00 2.62
1657 2385 0.615544 CCACCATTGCCCCTCACATT 60.616 55.000 0.00 0.00 0.00 2.71
1659 2387 1.508667 ATCCACCATTGCCCCTCACA 61.509 55.000 0.00 0.00 0.00 3.58
1660 2388 1.039233 CATCCACCATTGCCCCTCAC 61.039 60.000 0.00 0.00 0.00 3.51
1663 2391 2.691732 CCATCCACCATTGCCCCT 59.308 61.111 0.00 0.00 0.00 4.79
1746 2478 7.437713 AAAAGATGTGTGGACTATCTATCCA 57.562 36.000 0.00 0.00 44.20 3.41
1747 2479 7.442666 GGAAAAAGATGTGTGGACTATCTATCC 59.557 40.741 0.00 0.00 36.70 2.59
1748 2480 8.207545 AGGAAAAAGATGTGTGGACTATCTATC 58.792 37.037 0.00 0.00 31.30 2.08
1749 2481 8.095452 AGGAAAAAGATGTGTGGACTATCTAT 57.905 34.615 0.00 0.00 31.30 1.98
1750 2482 7.180229 TGAGGAAAAAGATGTGTGGACTATCTA 59.820 37.037 0.00 0.00 31.30 1.98
1751 2483 6.013379 TGAGGAAAAAGATGTGTGGACTATCT 60.013 38.462 0.00 0.00 32.80 1.98
1796 2552 1.203125 GGCTGGCTATCTAGGAGGACT 60.203 57.143 0.00 0.00 0.00 3.85
1797 2553 1.262417 GGCTGGCTATCTAGGAGGAC 58.738 60.000 0.00 0.00 0.00 3.85
1870 2630 1.002033 GCTGTGAAAAGGAGCTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
1897 2657 0.395586 AACAGTGTCCAAGCAGGCAA 60.396 50.000 0.00 0.00 37.29 4.52
1898 2658 0.819259 GAACAGTGTCCAAGCAGGCA 60.819 55.000 0.00 0.00 37.29 4.75
1899 2659 0.536006 AGAACAGTGTCCAAGCAGGC 60.536 55.000 0.00 0.00 37.29 4.85
1900 2660 1.202687 TGAGAACAGTGTCCAAGCAGG 60.203 52.381 0.00 0.00 39.47 4.85
1958 2718 5.594926 CTCCTGCTCTCAAATGTTGTTTTT 58.405 37.500 0.00 0.00 0.00 1.94
1963 2723 1.129998 CGCTCCTGCTCTCAAATGTTG 59.870 52.381 0.00 0.00 36.97 3.33
1967 2727 0.392193 CCACGCTCCTGCTCTCAAAT 60.392 55.000 0.00 0.00 36.97 2.32
2103 2863 1.938585 AACTAGGGACACTGCAGCTA 58.061 50.000 15.27 5.73 0.00 3.32
2113 2873 5.358090 GGATACTGCAACTTAACTAGGGAC 58.642 45.833 0.00 0.00 0.00 4.46
2147 2928 3.189910 CGTCATTGATTCCATAGCCCATG 59.810 47.826 0.00 0.00 0.00 3.66
2182 2963 4.838152 CATCCCCCGTGTCCGCTG 62.838 72.222 0.00 0.00 0.00 5.18
2197 2978 5.959583 TTGAAAACCCAAACCTAAACCAT 57.040 34.783 0.00 0.00 0.00 3.55
2198 2979 5.757099 TTTGAAAACCCAAACCTAAACCA 57.243 34.783 0.00 0.00 31.73 3.67
2268 3049 7.553881 TTTCTGACTAAAGAAAACACCTGAG 57.446 36.000 0.00 0.00 41.92 3.35
4557 5521 2.636403 TCCATATGCCCTCTCTGTCATG 59.364 50.000 0.00 0.00 0.00 3.07
4711 5679 3.403057 CTTCGTCACACCACCGCG 61.403 66.667 0.00 0.00 0.00 6.46
4734 5702 9.825972 CATTTCAAAACAATACTAATCGTGTCT 57.174 29.630 0.00 0.00 0.00 3.41
4806 5777 6.890979 TCATTGATGACAAACCAATACACA 57.109 33.333 0.00 0.00 39.54 3.72
4839 5810 3.623510 GCAAGTGATCTAGGTGCCTTAAC 59.376 47.826 0.00 0.00 0.00 2.01
4859 5830 6.427441 TGGGGTTGTAATCTAACATTATGCA 58.573 36.000 0.00 0.00 0.00 3.96
4860 5831 6.952773 TGGGGTTGTAATCTAACATTATGC 57.047 37.500 0.00 0.00 0.00 3.14
4877 5848 4.530553 GTCCAGTTAATTTCCAATGGGGTT 59.469 41.667 0.00 0.00 38.11 4.11
4887 5858 3.365472 AGCCCATGGTCCAGTTAATTTC 58.635 45.455 11.73 0.00 0.00 2.17
4894 5865 1.380302 GTGAAGCCCATGGTCCAGT 59.620 57.895 11.73 0.00 0.00 4.00
4936 5907 3.007398 TCAGTTGGGCAAAACAAACTTGT 59.993 39.130 5.28 0.00 44.72 3.16
4947 5918 2.727123 TCAGACTTTCAGTTGGGCAA 57.273 45.000 0.00 0.00 0.00 4.52
4949 5920 2.952310 ACTTTCAGACTTTCAGTTGGGC 59.048 45.455 0.00 0.00 0.00 5.36
4951 5922 3.248602 CGGACTTTCAGACTTTCAGTTGG 59.751 47.826 0.00 0.00 0.00 3.77
4971 5942 3.912745 AACCTTGCTTACCGGCCGG 62.913 63.158 42.17 42.17 42.03 6.13
5023 5995 8.594550 ACCTTTCTCTCTAAATGCTGTAGTTTA 58.405 33.333 0.00 0.00 0.00 2.01
5029 6001 4.220821 TCGACCTTTCTCTCTAAATGCTGT 59.779 41.667 0.00 0.00 0.00 4.40
5038 6010 5.723672 TTGTATTGTCGACCTTTCTCTCT 57.276 39.130 14.12 0.00 0.00 3.10
5059 6043 8.807948 TGCTTAATTCCTAAAGAGCTACATTT 57.192 30.769 0.00 0.00 0.00 2.32
5062 6046 6.598064 GGTTGCTTAATTCCTAAAGAGCTACA 59.402 38.462 9.22 0.00 37.52 2.74
5063 6047 6.038382 GGGTTGCTTAATTCCTAAAGAGCTAC 59.962 42.308 0.00 0.00 35.93 3.58
5066 6050 4.705023 TGGGTTGCTTAATTCCTAAAGAGC 59.295 41.667 0.00 0.00 0.00 4.09
5152 6138 6.089249 AGTTGTCCATGACTTTTCCATTTC 57.911 37.500 0.00 0.00 33.15 2.17
5498 6494 0.250124 ATTCGGTGCGACAAACTGGA 60.250 50.000 0.00 0.00 34.89 3.86
5618 6614 0.530870 GAGGGAGTGGTCGCAATAGC 60.531 60.000 0.00 0.00 38.11 2.97
5690 6686 5.063204 TCATCATTGAAAACACTTCGGTCT 58.937 37.500 0.00 0.00 0.00 3.85
5921 6917 4.937620 TCAAGCACTGTGATAAGATCAACC 59.062 41.667 12.86 0.00 41.69 3.77
5936 6932 2.613977 GCTACCACTGACATCAAGCACT 60.614 50.000 0.00 0.00 0.00 4.40
6272 7268 1.733402 ATGGTTTGTGTGCACCCGTG 61.733 55.000 15.69 0.00 31.24 4.94
6275 7271 2.101582 TGTAAATGGTTTGTGTGCACCC 59.898 45.455 15.69 8.33 31.24 4.61
6312 7308 0.594602 GCTGATGCTTTCTGTGCACA 59.405 50.000 20.37 20.37 43.59 4.57
6338 7334 0.460811 TAGATGGCAAGAGCGCACAG 60.461 55.000 11.47 0.88 43.41 3.66
6365 7361 1.344438 TGAACTGGTACCTGCTGACTG 59.656 52.381 18.02 0.00 0.00 3.51
6389 7385 2.027625 GTCAGCACCGAACCCGAAG 61.028 63.158 0.00 0.00 38.22 3.79
6473 7469 1.544314 GCATCTTGGATGGTAGCCTCC 60.544 57.143 9.12 9.12 0.00 4.30
6518 7514 1.224069 CCTGTGCGACCACACTCAAG 61.224 60.000 0.00 0.00 46.51 3.02
6542 7538 1.270147 ACACTCTCCACCTTTACACGC 60.270 52.381 0.00 0.00 0.00 5.34
6686 7682 1.001974 TGGGGAACGTTCAGAGTCATG 59.998 52.381 28.24 0.00 0.00 3.07
6710 7706 2.250939 TGCCGTTTCTTCGCCACAG 61.251 57.895 0.00 0.00 0.00 3.66
6809 7805 2.260434 GACACGAACGCAGGCCTA 59.740 61.111 3.98 0.00 0.00 3.93
6815 7811 4.874977 TGCACCGACACGAACGCA 62.875 61.111 0.00 0.00 0.00 5.24
6818 7814 1.010462 GGTTTGCACCGACACGAAC 60.010 57.895 0.00 0.00 31.60 3.95
7172 8168 0.448990 CCATCGACGTCGTCTGGTAA 59.551 55.000 33.96 20.12 40.80 2.85
7202 8198 2.919856 AGTGTCTGGGAGCGCAGT 60.920 61.111 11.47 0.00 0.00 4.40
7217 8213 3.735029 GTCGACGAGCGGGTCAGT 61.735 66.667 0.00 6.23 41.33 3.41
7250 8246 1.376424 CTTGGCGTGCCTCATCTGT 60.376 57.895 12.84 0.00 36.94 3.41
7489 8493 4.974721 CCCACCACCACCACCAGC 62.975 72.222 0.00 0.00 0.00 4.85
7490 8494 4.284550 CCCCACCACCACCACCAG 62.285 72.222 0.00 0.00 0.00 4.00
7493 8497 4.596585 CACCCCCACCACCACCAC 62.597 72.222 0.00 0.00 0.00 4.16
7494 8498 4.845307 TCACCCCCACCACCACCA 62.845 66.667 0.00 0.00 0.00 4.17
7495 8499 3.966543 CTCACCCCCACCACCACC 61.967 72.222 0.00 0.00 0.00 4.61
7496 8500 3.966543 CCTCACCCCCACCACCAC 61.967 72.222 0.00 0.00 0.00 4.16
7498 8502 3.749679 TATACCCTCACCCCCACCACC 62.750 61.905 0.00 0.00 0.00 4.61
7499 8503 0.326808 TATACCCTCACCCCCACCAC 60.327 60.000 0.00 0.00 0.00 4.16
7500 8504 0.651124 ATATACCCTCACCCCCACCA 59.349 55.000 0.00 0.00 0.00 4.17
7501 8505 1.064825 CATATACCCTCACCCCCACC 58.935 60.000 0.00 0.00 0.00 4.61
7502 8506 1.064825 CCATATACCCTCACCCCCAC 58.935 60.000 0.00 0.00 0.00 4.61
7503 8507 0.953430 TCCATATACCCTCACCCCCA 59.047 55.000 0.00 0.00 0.00 4.96
7504 8508 1.151413 TCTCCATATACCCTCACCCCC 59.849 57.143 0.00 0.00 0.00 5.40
7511 8806 9.369672 CTTAACTTAACTCTCTCCATATACCCT 57.630 37.037 0.00 0.00 0.00 4.34
7524 8819 9.102453 AGAATTACCTCACCTTAACTTAACTCT 57.898 33.333 0.00 0.00 0.00 3.24
7578 8972 0.254747 GCACACTTATACCAGCCCCA 59.745 55.000 0.00 0.00 0.00 4.96
7625 9019 0.740737 GCACAGCACAACACCTTCTT 59.259 50.000 0.00 0.00 0.00 2.52
7642 9036 1.750018 AACACAGCACAGCACAGCA 60.750 52.632 0.00 0.00 0.00 4.41
7643 9037 1.298863 CAACACAGCACAGCACAGC 60.299 57.895 0.00 0.00 0.00 4.40
7644 9038 1.357690 CCAACACAGCACAGCACAG 59.642 57.895 0.00 0.00 0.00 3.66
7645 9039 0.964860 AACCAACACAGCACAGCACA 60.965 50.000 0.00 0.00 0.00 4.57
7646 9040 1.021202 TAACCAACACAGCACAGCAC 58.979 50.000 0.00 0.00 0.00 4.40
7647 9041 1.021202 GTAACCAACACAGCACAGCA 58.979 50.000 0.00 0.00 0.00 4.41
7648 9042 1.308998 AGTAACCAACACAGCACAGC 58.691 50.000 0.00 0.00 0.00 4.40
7649 9043 2.033299 CCAAGTAACCAACACAGCACAG 59.967 50.000 0.00 0.00 0.00 3.66
7650 9044 2.020720 CCAAGTAACCAACACAGCACA 58.979 47.619 0.00 0.00 0.00 4.57
7651 9045 2.021457 ACCAAGTAACCAACACAGCAC 58.979 47.619 0.00 0.00 0.00 4.40
7732 9130 0.991146 ATGTACATCACCACCCAGCA 59.009 50.000 1.41 0.00 0.00 4.41
7733 9131 3.275617 TTATGTACATCACCACCCAGC 57.724 47.619 12.68 0.00 0.00 4.85
7734 9132 5.097742 TCTTTATGTACATCACCACCCAG 57.902 43.478 12.68 0.00 0.00 4.45
7735 9133 4.780554 TCTCTTTATGTACATCACCACCCA 59.219 41.667 12.68 0.00 0.00 4.51
7736 9134 5.353394 TCTCTTTATGTACATCACCACCC 57.647 43.478 12.68 0.00 0.00 4.61
7737 9135 5.760253 CCATCTCTTTATGTACATCACCACC 59.240 44.000 12.68 0.00 0.00 4.61
7738 9136 6.349300 ACCATCTCTTTATGTACATCACCAC 58.651 40.000 12.68 0.00 0.00 4.16
7775 9174 0.970640 TGGATTCAGTTCGGTTCGGA 59.029 50.000 0.00 0.00 0.00 4.55
7829 9228 3.507622 GGACTAGCCTTGCAACAAAGATT 59.492 43.478 0.00 0.00 0.00 2.40
7851 9250 1.077212 CAGACCCAGGGGCAGATTG 60.077 63.158 16.27 0.00 39.32 2.67
7864 9265 5.132897 TGCAAATTAACCATGTTCAGACC 57.867 39.130 0.00 0.00 0.00 3.85
7918 9344 3.904339 AGGAGAAGAGAACTGCCAAAGTA 59.096 43.478 0.00 0.00 38.56 2.24
7925 9351 1.001860 AGCACAGGAGAAGAGAACTGC 59.998 52.381 0.00 0.00 34.40 4.40
7931 9357 1.829849 TCCATCAGCACAGGAGAAGAG 59.170 52.381 0.00 0.00 0.00 2.85
7932 9358 1.942776 TCCATCAGCACAGGAGAAGA 58.057 50.000 0.00 0.00 0.00 2.87
7933 9359 2.093075 ACATCCATCAGCACAGGAGAAG 60.093 50.000 0.00 0.00 34.40 2.85
7971 9410 2.286294 GCGAAATCAGTAGCATCACCTG 59.714 50.000 0.00 0.00 0.00 4.00
7997 9440 1.928152 GCTCATCTCCATACGCGACAG 60.928 57.143 15.93 0.46 0.00 3.51
8054 9497 0.734889 CCGCCATCCAACAGATTCAC 59.265 55.000 0.00 0.00 30.59 3.18
8071 9514 3.607987 GTCGACGAGCAATCGCCG 61.608 66.667 0.00 0.00 40.15 6.46
8087 9530 4.086178 CGAGACACGACGAGCCGT 62.086 66.667 0.00 0.00 45.77 5.68
8088 9531 4.813526 CCGAGACACGACGAGCCG 62.814 72.222 0.00 0.00 45.77 5.52
8089 9532 1.712977 ATACCGAGACACGACGAGCC 61.713 60.000 0.00 0.00 45.77 4.70
8310 9753 1.571919 ATTCATACAGAGCCGCGTTC 58.428 50.000 4.92 2.05 0.00 3.95
8311 9754 2.024176 AATTCATACAGAGCCGCGTT 57.976 45.000 4.92 0.00 0.00 4.84
8312 9755 1.665679 CAAATTCATACAGAGCCGCGT 59.334 47.619 4.92 0.00 0.00 6.01
8313 9756 1.003545 CCAAATTCATACAGAGCCGCG 60.004 52.381 0.00 0.00 0.00 6.46
8314 9757 1.334869 CCCAAATTCATACAGAGCCGC 59.665 52.381 0.00 0.00 0.00 6.53
8315 9758 1.334869 GCCCAAATTCATACAGAGCCG 59.665 52.381 0.00 0.00 0.00 5.52
8316 9759 1.683385 GGCCCAAATTCATACAGAGCC 59.317 52.381 0.00 0.00 0.00 4.70
8317 9760 2.360165 CAGGCCCAAATTCATACAGAGC 59.640 50.000 0.00 0.00 0.00 4.09
8318 9761 2.954318 CCAGGCCCAAATTCATACAGAG 59.046 50.000 0.00 0.00 0.00 3.35
8319 9762 2.358090 CCCAGGCCCAAATTCATACAGA 60.358 50.000 0.00 0.00 0.00 3.41
8320 9763 2.034124 CCCAGGCCCAAATTCATACAG 58.966 52.381 0.00 0.00 0.00 2.74
8321 9764 1.964344 GCCCAGGCCCAAATTCATACA 60.964 52.381 0.00 0.00 34.56 2.29
8322 9765 0.752658 GCCCAGGCCCAAATTCATAC 59.247 55.000 0.00 0.00 34.56 2.39
8323 9766 0.636101 AGCCCAGGCCCAAATTCATA 59.364 50.000 4.70 0.00 43.17 2.15
8324 9767 0.252835 AAGCCCAGGCCCAAATTCAT 60.253 50.000 4.70 0.00 43.17 2.57
8325 9768 0.904394 GAAGCCCAGGCCCAAATTCA 60.904 55.000 4.70 0.00 43.17 2.57
8326 9769 1.617018 GGAAGCCCAGGCCCAAATTC 61.617 60.000 4.70 2.05 43.17 2.17
8327 9770 1.613332 GGAAGCCCAGGCCCAAATT 60.613 57.895 4.70 0.00 43.17 1.82
8328 9771 2.039462 GGAAGCCCAGGCCCAAAT 59.961 61.111 4.70 0.00 43.17 2.32
8329 9772 3.192630 AGGAAGCCCAGGCCCAAA 61.193 61.111 4.70 0.00 43.17 3.28
8330 9773 2.781258 TAGAGGAAGCCCAGGCCCAA 62.781 60.000 4.70 0.00 43.17 4.12
8331 9774 3.267177 TAGAGGAAGCCCAGGCCCA 62.267 63.158 4.70 0.00 43.17 5.36
8332 9775 2.366972 TAGAGGAAGCCCAGGCCC 60.367 66.667 4.70 0.00 43.17 5.80
8333 9776 2.447714 CCTAGAGGAAGCCCAGGCC 61.448 68.421 4.70 0.00 38.70 5.19
8334 9777 3.113514 GCCTAGAGGAAGCCCAGGC 62.114 68.421 0.00 0.00 44.54 4.85
8335 9778 2.447714 GGCCTAGAGGAAGCCCAGG 61.448 68.421 0.00 0.00 41.00 4.45
8336 9779 3.235369 GGCCTAGAGGAAGCCCAG 58.765 66.667 0.00 0.00 41.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.