Multiple sequence alignment - TraesCS6B01G412800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G412800 chr6B 100.000 4014 0 0 1 4014 686216778 686212765 0.000000e+00 7413.0
1 TraesCS6B01G412800 chr6B 97.792 906 19 1 3110 4014 184830958 184830053 0.000000e+00 1561.0
2 TraesCS6B01G412800 chr6B 97.580 909 22 0 3106 4014 720034606 720033698 0.000000e+00 1557.0
3 TraesCS6B01G412800 chr6B 100.000 32 0 0 467 498 718911224 718911255 4.330000e-05 60.2
4 TraesCS6B01G412800 chr6A 92.200 1282 72 5 1859 3113 597783233 597781953 0.000000e+00 1788.0
5 TraesCS6B01G412800 chr6A 90.786 814 38 14 938 1720 597784178 597783371 0.000000e+00 1053.0
6 TraesCS6B01G412800 chr6A 82.421 603 81 11 1012 1598 597701101 597700508 1.670000e-138 503.0
7 TraesCS6B01G412800 chr6A 77.370 791 139 27 2264 3041 597700377 597699614 2.220000e-117 433.0
8 TraesCS6B01G412800 chr6A 83.182 220 17 10 587 787 597784581 597784363 2.460000e-42 183.0
9 TraesCS6B01G412800 chr6A 92.857 98 7 0 1730 1827 597783329 597783232 4.180000e-30 143.0
10 TraesCS6B01G412800 chr6A 93.750 96 4 2 785 880 597784282 597784189 4.180000e-30 143.0
11 TraesCS6B01G412800 chr2B 97.802 910 20 0 3105 4014 631347068 631347977 0.000000e+00 1570.0
12 TraesCS6B01G412800 chr2B 97.682 906 19 2 3110 4014 624971900 624970996 0.000000e+00 1555.0
13 TraesCS6B01G412800 chr5B 97.790 905 20 0 3110 4014 640369077 640368173 0.000000e+00 1561.0
14 TraesCS6B01G412800 chr4B 97.486 915 22 1 3100 4014 534838065 534837152 0.000000e+00 1561.0
15 TraesCS6B01G412800 chr4B 81.865 193 31 3 8 199 50195027 50195216 4.150000e-35 159.0
16 TraesCS6B01G412800 chr1B 97.680 905 21 0 3110 4014 198699427 198700331 0.000000e+00 1555.0
17 TraesCS6B01G412800 chr1B 97.682 906 20 1 3110 4014 358295205 358294300 0.000000e+00 1555.0
18 TraesCS6B01G412800 chr1B 85.227 88 12 1 410 497 331097570 331097656 5.530000e-14 89.8
19 TraesCS6B01G412800 chr1B 87.931 58 5 1 3041 3096 6098042 6097985 2.590000e-07 67.6
20 TraesCS6B01G412800 chr1B 81.111 90 11 6 411 497 661600064 661600150 2.590000e-07 67.6
21 TraesCS6B01G412800 chr7B 96.868 926 24 5 3091 4014 705885395 705884473 0.000000e+00 1544.0
22 TraesCS6B01G412800 chr7B 74.286 700 148 21 2320 3016 41522666 41521996 2.380000e-67 267.0
23 TraesCS6B01G412800 chr7B 85.887 248 35 0 999 1246 678901017 678900770 8.550000e-67 265.0
24 TraesCS6B01G412800 chr7B 78.947 418 63 10 2611 3026 678897397 678897003 1.110000e-65 261.0
25 TraesCS6B01G412800 chr6D 91.125 1093 78 8 2029 3113 451857705 451856624 0.000000e+00 1463.0
26 TraesCS6B01G412800 chr6D 84.909 1206 70 45 587 1720 451862258 451861093 0.000000e+00 1116.0
27 TraesCS6B01G412800 chr6D 82.274 598 84 13 1014 1598 451784890 451784302 7.750000e-137 497.0
28 TraesCS6B01G412800 chr6D 79.614 726 117 23 2314 3031 451854979 451855681 3.600000e-135 492.0
29 TraesCS6B01G412800 chr6D 93.427 213 12 1 197 409 451862524 451862314 8.370000e-82 315.0
30 TraesCS6B01G412800 chr6D 83.505 194 29 3 9 199 435908257 435908064 1.150000e-40 178.0
31 TraesCS6B01G412800 chr6D 90.909 99 8 1 1730 1827 451859868 451859770 9.050000e-27 132.0
32 TraesCS6B01G412800 chr6D 92.105 76 6 0 1859 1934 451859771 451859696 1.530000e-19 108.0
33 TraesCS6B01G412800 chr6D 95.556 45 2 0 543 587 451862321 451862277 5.560000e-09 73.1
34 TraesCS6B01G412800 chrUn 79.958 474 76 16 2563 3031 99818208 99818667 8.320000e-87 331.0
35 TraesCS6B01G412800 chr2D 84.896 192 25 2 9 198 83861059 83860870 1.470000e-44 191.0
36 TraesCS6B01G412800 chr2D 85.714 91 13 0 409 499 37051332 37051422 3.300000e-16 97.1
37 TraesCS6B01G412800 chr2D 91.304 46 3 1 410 455 567000509 567000553 1.200000e-05 62.1
38 TraesCS6B01G412800 chr2D 88.000 50 5 1 3044 3092 119180908 119180859 1.560000e-04 58.4
39 TraesCS6B01G412800 chr5A 82.447 188 31 2 11 196 575899917 575900104 3.210000e-36 163.0
40 TraesCS6B01G412800 chr5A 97.059 34 1 0 1826 1859 471724915 471724882 1.560000e-04 58.4
41 TraesCS6B01G412800 chr4A 80.928 194 35 2 9 200 740027759 740027566 6.950000e-33 152.0
42 TraesCS6B01G412800 chr3B 89.873 79 8 0 421 499 9332864 9332786 7.100000e-18 102.0
43 TraesCS6B01G412800 chr3B 90.741 54 4 1 3041 3093 322726837 322726784 2.000000e-08 71.3
44 TraesCS6B01G412800 chr1A 87.500 88 11 0 409 496 558299173 558299260 7.100000e-18 102.0
45 TraesCS6B01G412800 chr1A 86.667 90 12 0 407 496 440459326 440459415 2.550000e-17 100.0
46 TraesCS6B01G412800 chr3A 83.333 84 12 2 411 493 508519919 508519837 4.300000e-10 76.8
47 TraesCS6B01G412800 chr7D 83.544 79 12 1 421 498 514090468 514090390 5.560000e-09 73.1
48 TraesCS6B01G412800 chr1D 90.566 53 4 1 3041 3093 485481452 485481503 7.200000e-08 69.4
49 TraesCS6B01G412800 chr5D 88.889 54 5 1 3041 3093 8019523 8019470 9.310000e-07 65.8
50 TraesCS6B01G412800 chr5D 88.679 53 6 0 3041 3093 35546620 35546568 9.310000e-07 65.8
51 TraesCS6B01G412800 chr5D 88.462 52 6 0 3043 3094 493114724 493114775 3.350000e-06 63.9
52 TraesCS6B01G412800 chr5D 100.000 30 0 0 26 55 437873736 437873707 5.600000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G412800 chr6B 686212765 686216778 4013 True 7413.000000 7413 100.0000 1 4014 1 chr6B.!!$R2 4013
1 TraesCS6B01G412800 chr6B 184830053 184830958 905 True 1561.000000 1561 97.7920 3110 4014 1 chr6B.!!$R1 904
2 TraesCS6B01G412800 chr6B 720033698 720034606 908 True 1557.000000 1557 97.5800 3106 4014 1 chr6B.!!$R3 908
3 TraesCS6B01G412800 chr6A 597781953 597784581 2628 True 662.000000 1788 90.5550 587 3113 5 chr6A.!!$R2 2526
4 TraesCS6B01G412800 chr6A 597699614 597701101 1487 True 468.000000 503 79.8955 1012 3041 2 chr6A.!!$R1 2029
5 TraesCS6B01G412800 chr2B 631347068 631347977 909 False 1570.000000 1570 97.8020 3105 4014 1 chr2B.!!$F1 909
6 TraesCS6B01G412800 chr2B 624970996 624971900 904 True 1555.000000 1555 97.6820 3110 4014 1 chr2B.!!$R1 904
7 TraesCS6B01G412800 chr5B 640368173 640369077 904 True 1561.000000 1561 97.7900 3110 4014 1 chr5B.!!$R1 904
8 TraesCS6B01G412800 chr4B 534837152 534838065 913 True 1561.000000 1561 97.4860 3100 4014 1 chr4B.!!$R1 914
9 TraesCS6B01G412800 chr1B 198699427 198700331 904 False 1555.000000 1555 97.6800 3110 4014 1 chr1B.!!$F1 904
10 TraesCS6B01G412800 chr1B 358294300 358295205 905 True 1555.000000 1555 97.6820 3110 4014 1 chr1B.!!$R2 904
11 TraesCS6B01G412800 chr7B 705884473 705885395 922 True 1544.000000 1544 96.8680 3091 4014 1 chr7B.!!$R2 923
12 TraesCS6B01G412800 chr7B 41521996 41522666 670 True 267.000000 267 74.2860 2320 3016 1 chr7B.!!$R1 696
13 TraesCS6B01G412800 chr7B 678897003 678901017 4014 True 263.000000 265 82.4170 999 3026 2 chr7B.!!$R3 2027
14 TraesCS6B01G412800 chr6D 451856624 451862524 5900 True 534.516667 1463 91.3385 197 3113 6 chr6D.!!$R3 2916
15 TraesCS6B01G412800 chr6D 451784302 451784890 588 True 497.000000 497 82.2740 1014 1598 1 chr6D.!!$R2 584
16 TraesCS6B01G412800 chr6D 451854979 451855681 702 False 492.000000 492 79.6140 2314 3031 1 chr6D.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 1051 0.107410 AACACGACAAGGCAGGAACA 60.107 50.0 0.00 0.0 0.00 3.18 F
1841 4737 0.033796 ATGTACTCCCTCGGTCCGAA 60.034 55.0 16.23 0.0 34.74 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2186 7045 0.249699 TATGTTATGACCTGGCGGCG 60.250 55.0 0.51 0.51 0.0 6.46 R
3618 8999 0.742635 TGCCGAAGATAACATGCGCA 60.743 50.0 14.96 14.96 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.604626 GAGATTGTGCAGTATAAATTATGAAGC 57.395 33.333 0.00 0.00 0.00 3.86
27 28 8.285394 AGATTGTGCAGTATAAATTATGAAGCG 58.715 33.333 0.00 0.00 0.00 4.68
28 29 5.747565 TGTGCAGTATAAATTATGAAGCGC 58.252 37.500 0.00 0.00 0.00 5.92
29 30 4.840772 GTGCAGTATAAATTATGAAGCGCG 59.159 41.667 0.00 0.00 0.00 6.86
30 31 3.840763 GCAGTATAAATTATGAAGCGCGC 59.159 43.478 26.66 26.66 0.00 6.86
31 32 4.610456 GCAGTATAAATTATGAAGCGCGCA 60.610 41.667 35.10 13.97 0.00 6.09
32 33 4.840772 CAGTATAAATTATGAAGCGCGCAC 59.159 41.667 35.10 25.80 0.00 5.34
33 34 3.961477 ATAAATTATGAAGCGCGCACA 57.039 38.095 35.10 30.39 0.00 4.57
34 35 2.627863 AAATTATGAAGCGCGCACAA 57.372 40.000 35.10 18.20 0.00 3.33
35 36 2.849880 AATTATGAAGCGCGCACAAT 57.150 40.000 35.10 23.68 0.00 2.71
36 37 2.389713 ATTATGAAGCGCGCACAATC 57.610 45.000 35.10 23.99 0.00 2.67
37 38 0.376852 TTATGAAGCGCGCACAATCC 59.623 50.000 35.10 14.90 0.00 3.01
38 39 1.761244 TATGAAGCGCGCACAATCCG 61.761 55.000 35.10 0.00 0.00 4.18
39 40 4.520846 GAAGCGCGCACAATCCGG 62.521 66.667 35.10 0.00 0.00 5.14
47 48 2.745884 CACAATCCGGCGCCTCAA 60.746 61.111 26.68 10.02 0.00 3.02
48 49 2.033448 ACAATCCGGCGCCTCAAA 59.967 55.556 26.68 7.16 0.00 2.69
49 50 1.378514 ACAATCCGGCGCCTCAAAT 60.379 52.632 26.68 9.38 0.00 2.32
50 51 0.965363 ACAATCCGGCGCCTCAAATT 60.965 50.000 26.68 14.93 0.00 1.82
51 52 0.173255 CAATCCGGCGCCTCAAATTT 59.827 50.000 26.68 6.48 0.00 1.82
52 53 0.173255 AATCCGGCGCCTCAAATTTG 59.827 50.000 26.68 12.15 0.00 2.32
53 54 2.283472 ATCCGGCGCCTCAAATTTGC 62.283 55.000 26.68 1.00 0.00 3.68
54 55 2.257980 CGGCGCCTCAAATTTGCA 59.742 55.556 26.68 2.12 0.00 4.08
55 56 1.372748 CGGCGCCTCAAATTTGCAA 60.373 52.632 26.68 0.00 0.00 4.08
56 57 1.346378 CGGCGCCTCAAATTTGCAAG 61.346 55.000 26.68 6.61 0.00 4.01
57 58 0.319813 GGCGCCTCAAATTTGCAAGT 60.320 50.000 22.15 0.00 0.00 3.16
58 59 1.501169 GCGCCTCAAATTTGCAAGTT 58.499 45.000 13.54 0.65 0.00 2.66
59 60 1.866601 GCGCCTCAAATTTGCAAGTTT 59.133 42.857 13.60 13.60 0.00 2.66
60 61 2.287644 GCGCCTCAAATTTGCAAGTTTT 59.712 40.909 16.38 9.89 0.00 2.43
61 62 3.242706 GCGCCTCAAATTTGCAAGTTTTT 60.243 39.130 16.38 7.57 0.00 1.94
62 63 4.025313 GCGCCTCAAATTTGCAAGTTTTTA 60.025 37.500 16.38 7.86 0.00 1.52
63 64 5.334028 GCGCCTCAAATTTGCAAGTTTTTAT 60.334 36.000 16.38 0.00 0.00 1.40
64 65 6.128688 GCGCCTCAAATTTGCAAGTTTTTATA 60.129 34.615 16.38 3.50 0.00 0.98
65 66 7.447430 CGCCTCAAATTTGCAAGTTTTTATAG 58.553 34.615 16.38 11.35 0.00 1.31
66 67 7.236474 GCCTCAAATTTGCAAGTTTTTATAGC 58.764 34.615 16.38 11.49 0.00 2.97
67 68 7.447430 CCTCAAATTTGCAAGTTTTTATAGCG 58.553 34.615 16.38 5.04 0.00 4.26
68 69 7.116233 CCTCAAATTTGCAAGTTTTTATAGCGT 59.884 33.333 16.38 0.00 0.00 5.07
69 70 8.359060 TCAAATTTGCAAGTTTTTATAGCGTT 57.641 26.923 16.38 0.00 0.00 4.84
70 71 8.821894 TCAAATTTGCAAGTTTTTATAGCGTTT 58.178 25.926 16.38 0.00 0.00 3.60
71 72 9.432077 CAAATTTGCAAGTTTTTATAGCGTTTT 57.568 25.926 16.38 0.00 0.00 2.43
72 73 9.995957 AAATTTGCAAGTTTTTATAGCGTTTTT 57.004 22.222 13.60 0.00 0.00 1.94
73 74 9.644993 AATTTGCAAGTTTTTATAGCGTTTTTC 57.355 25.926 0.65 0.00 0.00 2.29
74 75 7.757097 TTGCAAGTTTTTATAGCGTTTTTCA 57.243 28.000 0.00 0.00 0.00 2.69
75 76 7.388290 TGCAAGTTTTTATAGCGTTTTTCAG 57.612 32.000 0.00 0.00 0.00 3.02
76 77 6.074569 TGCAAGTTTTTATAGCGTTTTTCAGC 60.075 34.615 0.00 0.00 0.00 4.26
77 78 6.504821 CAAGTTTTTATAGCGTTTTTCAGCG 58.495 36.000 0.00 0.00 38.61 5.18
93 94 4.639171 CGCGCGCCCAACCTTTTT 62.639 61.111 27.72 0.00 0.00 1.94
110 111 2.546195 TTTTTACGCGCACACTGTTT 57.454 40.000 5.73 0.00 0.00 2.83
111 112 2.546195 TTTTACGCGCACACTGTTTT 57.454 40.000 5.73 0.00 0.00 2.43
112 113 3.670311 TTTTACGCGCACACTGTTTTA 57.330 38.095 5.73 0.00 0.00 1.52
113 114 2.649140 TTACGCGCACACTGTTTTAC 57.351 45.000 5.73 0.00 0.00 2.01
114 115 1.568606 TACGCGCACACTGTTTTACA 58.431 45.000 5.73 0.00 0.00 2.41
124 125 2.601481 CTGTTTTACAGCTTCTGCCG 57.399 50.000 0.00 0.00 39.62 5.69
125 126 1.197721 CTGTTTTACAGCTTCTGCCGG 59.802 52.381 0.00 0.00 39.62 6.13
126 127 1.202710 TGTTTTACAGCTTCTGCCGGA 60.203 47.619 5.05 0.00 40.80 5.14
127 128 1.464997 GTTTTACAGCTTCTGCCGGAG 59.535 52.381 5.05 0.00 40.80 4.63
128 129 0.673644 TTTACAGCTTCTGCCGGAGC 60.674 55.000 5.05 4.85 40.80 4.70
129 130 1.544825 TTACAGCTTCTGCCGGAGCT 61.545 55.000 5.05 7.81 40.80 4.09
130 131 1.544825 TACAGCTTCTGCCGGAGCTT 61.545 55.000 8.42 3.58 40.80 3.74
131 132 1.673665 CAGCTTCTGCCGGAGCTTT 60.674 57.895 8.42 0.00 40.80 3.51
132 133 1.376553 AGCTTCTGCCGGAGCTTTC 60.377 57.895 5.05 0.00 40.80 2.62
133 134 2.402572 GCTTCTGCCGGAGCTTTCC 61.403 63.158 5.05 0.00 40.80 3.13
142 143 4.388499 GAGCTTTCCGACGCCCCA 62.388 66.667 0.00 0.00 0.00 4.96
143 144 3.894547 GAGCTTTCCGACGCCCCAA 62.895 63.158 0.00 0.00 0.00 4.12
144 145 2.981350 GCTTTCCGACGCCCCAAA 60.981 61.111 0.00 0.00 0.00 3.28
145 146 2.557372 GCTTTCCGACGCCCCAAAA 61.557 57.895 0.00 0.00 0.00 2.44
146 147 2.034607 CTTTCCGACGCCCCAAAAA 58.965 52.632 0.00 0.00 0.00 1.94
164 165 2.319241 AAACGGATTTTAACGCGTGG 57.681 45.000 14.98 0.00 0.00 4.94
165 166 0.110101 AACGGATTTTAACGCGTGGC 60.110 50.000 14.98 0.00 0.00 5.01
166 167 1.226184 CGGATTTTAACGCGTGGCC 60.226 57.895 14.98 7.37 0.00 5.36
167 168 1.138036 GGATTTTAACGCGTGGCCC 59.862 57.895 14.98 5.00 0.00 5.80
168 169 1.587933 GGATTTTAACGCGTGGCCCA 61.588 55.000 14.98 0.00 0.00 5.36
169 170 0.179174 GATTTTAACGCGTGGCCCAG 60.179 55.000 14.98 0.00 0.00 4.45
170 171 0.891904 ATTTTAACGCGTGGCCCAGT 60.892 50.000 14.98 0.00 0.00 4.00
171 172 1.102222 TTTTAACGCGTGGCCCAGTT 61.102 50.000 14.98 3.79 0.00 3.16
172 173 1.102222 TTTAACGCGTGGCCCAGTTT 61.102 50.000 14.98 0.00 0.00 2.66
173 174 1.102222 TTAACGCGTGGCCCAGTTTT 61.102 50.000 14.98 0.00 0.00 2.43
174 175 1.102222 TAACGCGTGGCCCAGTTTTT 61.102 50.000 14.98 0.00 0.00 1.94
175 176 2.354539 CGCGTGGCCCAGTTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
183 184 2.650778 CCAGTTTTTGGGCGCCTC 59.349 61.111 28.56 17.27 43.75 4.70
184 185 1.903404 CCAGTTTTTGGGCGCCTCT 60.903 57.895 28.56 12.09 43.75 3.69
185 186 1.463553 CCAGTTTTTGGGCGCCTCTT 61.464 55.000 28.56 2.19 43.75 2.85
186 187 0.318955 CAGTTTTTGGGCGCCTCTTG 60.319 55.000 28.56 11.37 0.00 3.02
187 188 1.006220 GTTTTTGGGCGCCTCTTGG 60.006 57.895 28.56 0.00 0.00 3.61
188 189 1.152652 TTTTTGGGCGCCTCTTGGA 60.153 52.632 28.56 5.58 34.57 3.53
189 190 1.178534 TTTTTGGGCGCCTCTTGGAG 61.179 55.000 28.56 0.00 36.16 3.86
190 191 2.063015 TTTTGGGCGCCTCTTGGAGA 62.063 55.000 28.56 1.45 34.95 3.71
191 192 1.852157 TTTGGGCGCCTCTTGGAGAT 61.852 55.000 28.56 0.00 34.95 2.75
192 193 2.203126 GGGCGCCTCTTGGAGATG 60.203 66.667 28.56 0.00 34.95 2.90
193 194 2.899339 GGCGCCTCTTGGAGATGC 60.899 66.667 22.15 0.21 34.95 3.91
194 195 2.188994 GCGCCTCTTGGAGATGCT 59.811 61.111 0.00 0.00 34.33 3.79
195 196 1.886777 GCGCCTCTTGGAGATGCTC 60.887 63.158 0.00 0.00 34.33 4.26
205 206 5.601662 TCTTGGAGATGCTCTAAATTACCG 58.398 41.667 0.00 0.00 31.00 4.02
243 244 6.560253 ACAATGTAGCAAAAGGAGTAACAG 57.440 37.500 0.00 0.00 0.00 3.16
268 269 5.885230 TTTGACATTCATGATGGTCTGTC 57.115 39.130 21.11 16.59 40.21 3.51
318 319 1.168714 AGCTTTTTGGAGCACCGATC 58.831 50.000 0.00 0.00 45.12 3.69
323 324 1.522668 TTTGGAGCACCGATCTTGTG 58.477 50.000 7.64 7.64 39.42 3.33
325 326 1.262417 TGGAGCACCGATCTTGTGTA 58.738 50.000 12.20 0.00 39.42 2.90
327 328 2.000447 GGAGCACCGATCTTGTGTAAC 59.000 52.381 12.20 5.88 36.11 2.50
337 338 4.201494 CGATCTTGTGTAACTTGTGCGTAG 60.201 45.833 0.00 0.00 38.04 3.51
383 384 4.390603 ACGAAATTTCACACGCAGCTATAA 59.609 37.500 17.99 0.00 0.00 0.98
391 392 1.134818 CACGCAGCTATAAGACACCCA 60.135 52.381 0.00 0.00 0.00 4.51
392 393 1.762957 ACGCAGCTATAAGACACCCAT 59.237 47.619 0.00 0.00 0.00 4.00
409 410 5.048083 ACACCCATAAACATGTTGTTGCTAG 60.048 40.000 12.82 3.73 40.14 3.42
410 411 4.082245 ACCCATAAACATGTTGTTGCTAGC 60.082 41.667 12.82 8.10 40.14 3.42
411 412 4.097714 CCATAAACATGTTGTTGCTAGCG 58.902 43.478 12.82 0.00 40.14 4.26
413 414 3.980646 AAACATGTTGTTGCTAGCGAA 57.019 38.095 12.82 0.58 40.14 4.70
414 415 4.503741 AAACATGTTGTTGCTAGCGAAT 57.496 36.364 12.82 0.00 40.14 3.34
415 416 3.747099 ACATGTTGTTGCTAGCGAATC 57.253 42.857 6.14 0.98 0.00 2.52
416 417 3.073678 ACATGTTGTTGCTAGCGAATCA 58.926 40.909 6.14 6.82 0.00 2.57
417 418 3.501828 ACATGTTGTTGCTAGCGAATCAA 59.498 39.130 6.14 5.05 0.00 2.57
418 419 3.536158 TGTTGTTGCTAGCGAATCAAC 57.464 42.857 22.70 22.70 40.17 3.18
419 420 3.138304 TGTTGTTGCTAGCGAATCAACT 58.862 40.909 26.56 0.00 40.34 3.16
420 421 3.563808 TGTTGTTGCTAGCGAATCAACTT 59.436 39.130 26.56 0.00 40.34 2.66
421 422 3.811722 TGTTGCTAGCGAATCAACTTG 57.188 42.857 6.14 0.00 40.34 3.16
422 423 3.138304 TGTTGCTAGCGAATCAACTTGT 58.862 40.909 6.14 0.00 40.34 3.16
423 424 3.058983 TGTTGCTAGCGAATCAACTTGTG 60.059 43.478 6.14 0.00 40.34 3.33
424 425 3.038788 TGCTAGCGAATCAACTTGTGA 57.961 42.857 10.77 0.00 41.67 3.58
435 436 4.097551 TCAACTTGTGATTGGATGGTCA 57.902 40.909 0.00 0.00 0.00 4.02
436 437 4.074259 TCAACTTGTGATTGGATGGTCAG 58.926 43.478 0.00 0.00 0.00 3.51
437 438 4.074259 CAACTTGTGATTGGATGGTCAGA 58.926 43.478 0.00 0.00 0.00 3.27
438 439 3.947868 ACTTGTGATTGGATGGTCAGAG 58.052 45.455 0.00 0.00 0.00 3.35
439 440 3.276857 CTTGTGATTGGATGGTCAGAGG 58.723 50.000 0.00 0.00 0.00 3.69
440 441 2.550175 TGTGATTGGATGGTCAGAGGA 58.450 47.619 0.00 0.00 0.00 3.71
441 442 2.912295 TGTGATTGGATGGTCAGAGGAA 59.088 45.455 0.00 0.00 0.00 3.36
442 443 3.274288 GTGATTGGATGGTCAGAGGAAC 58.726 50.000 0.00 0.00 0.00 3.62
444 445 4.162320 GTGATTGGATGGTCAGAGGAACTA 59.838 45.833 0.00 0.00 41.55 2.24
445 446 4.971282 TGATTGGATGGTCAGAGGAACTAT 59.029 41.667 0.00 0.00 41.55 2.12
457 458 6.927294 CAGAGGAACTATGGTATTCCAAAC 57.073 41.667 5.84 0.00 45.01 2.93
458 459 5.823045 CAGAGGAACTATGGTATTCCAAACC 59.177 44.000 5.84 0.00 45.01 3.27
459 460 5.104067 AGAGGAACTATGGTATTCCAAACCC 60.104 44.000 5.84 0.00 45.90 4.11
460 461 5.339695 GAGGAACTATGGTATTCCAAACCCA 60.340 44.000 5.84 0.00 45.90 4.51
461 462 7.357069 GAGGAACTATGGTATTCCAAACCCAC 61.357 46.154 5.84 0.00 45.90 4.61
464 465 2.483014 TGGTATTCCAAACCCACGAG 57.517 50.000 0.00 0.00 41.25 4.18
465 466 1.003812 TGGTATTCCAAACCCACGAGG 59.996 52.381 0.00 0.00 41.25 4.63
475 476 4.695560 CCACGAGGGTTCAAGTCC 57.304 61.111 0.00 0.00 0.00 3.85
476 477 2.058675 CCACGAGGGTTCAAGTCCT 58.941 57.895 0.00 0.00 35.82 3.85
477 478 0.320771 CCACGAGGGTTCAAGTCCTG 60.321 60.000 0.00 0.00 32.74 3.86
478 479 0.679505 CACGAGGGTTCAAGTCCTGA 59.320 55.000 0.00 0.00 32.74 3.86
479 480 1.276421 CACGAGGGTTCAAGTCCTGAT 59.724 52.381 0.00 0.00 32.78 2.90
480 481 1.276421 ACGAGGGTTCAAGTCCTGATG 59.724 52.381 0.00 0.00 32.78 3.07
481 482 1.743996 GAGGGTTCAAGTCCTGATGC 58.256 55.000 0.00 0.00 32.78 3.91
482 483 1.280421 GAGGGTTCAAGTCCTGATGCT 59.720 52.381 0.00 0.00 32.78 3.79
483 484 1.280421 AGGGTTCAAGTCCTGATGCTC 59.720 52.381 0.00 0.00 32.78 4.26
484 485 1.003580 GGGTTCAAGTCCTGATGCTCA 59.996 52.381 0.00 0.00 32.78 4.26
485 486 2.079925 GGTTCAAGTCCTGATGCTCAC 58.920 52.381 0.00 0.00 32.78 3.51
486 487 2.550855 GGTTCAAGTCCTGATGCTCACA 60.551 50.000 0.00 0.00 32.78 3.58
487 488 3.341823 GTTCAAGTCCTGATGCTCACAT 58.658 45.455 0.00 0.00 39.98 3.21
488 489 3.708403 TCAAGTCCTGATGCTCACATT 57.292 42.857 0.00 0.00 36.35 2.71
489 490 4.025040 TCAAGTCCTGATGCTCACATTT 57.975 40.909 0.00 0.00 36.35 2.32
490 491 5.164620 TCAAGTCCTGATGCTCACATTTA 57.835 39.130 0.00 0.00 36.35 1.40
491 492 5.748402 TCAAGTCCTGATGCTCACATTTAT 58.252 37.500 0.00 0.00 36.35 1.40
492 493 6.182627 TCAAGTCCTGATGCTCACATTTATT 58.817 36.000 0.00 0.00 36.35 1.40
493 494 6.317140 TCAAGTCCTGATGCTCACATTTATTC 59.683 38.462 0.00 0.00 36.35 1.75
494 495 5.128919 AGTCCTGATGCTCACATTTATTCC 58.871 41.667 0.00 0.00 36.35 3.01
495 496 5.104193 AGTCCTGATGCTCACATTTATTCCT 60.104 40.000 0.00 0.00 36.35 3.36
496 497 5.008415 GTCCTGATGCTCACATTTATTCCTG 59.992 44.000 0.00 0.00 36.35 3.86
497 498 4.277672 CCTGATGCTCACATTTATTCCTGG 59.722 45.833 0.00 0.00 36.35 4.45
498 499 5.114764 TGATGCTCACATTTATTCCTGGA 57.885 39.130 0.00 0.00 36.35 3.86
499 500 4.883585 TGATGCTCACATTTATTCCTGGAC 59.116 41.667 0.00 0.00 36.35 4.02
500 501 4.574674 TGCTCACATTTATTCCTGGACT 57.425 40.909 0.00 0.00 0.00 3.85
501 502 4.264253 TGCTCACATTTATTCCTGGACTG 58.736 43.478 0.00 0.00 0.00 3.51
502 503 4.263462 TGCTCACATTTATTCCTGGACTGT 60.263 41.667 0.00 0.00 0.00 3.55
503 504 4.333926 GCTCACATTTATTCCTGGACTGTC 59.666 45.833 0.00 0.00 0.00 3.51
504 505 5.738909 CTCACATTTATTCCTGGACTGTCT 58.261 41.667 7.85 0.00 0.00 3.41
505 506 6.126863 TCACATTTATTCCTGGACTGTCTT 57.873 37.500 7.85 0.00 0.00 3.01
506 507 6.542821 TCACATTTATTCCTGGACTGTCTTT 58.457 36.000 7.85 0.00 0.00 2.52
507 508 7.685481 TCACATTTATTCCTGGACTGTCTTTA 58.315 34.615 7.85 0.00 0.00 1.85
508 509 8.160765 TCACATTTATTCCTGGACTGTCTTTAA 58.839 33.333 7.85 0.00 0.00 1.52
509 510 8.792633 CACATTTATTCCTGGACTGTCTTTAAA 58.207 33.333 7.85 4.43 0.00 1.52
510 511 9.362151 ACATTTATTCCTGGACTGTCTTTAAAA 57.638 29.630 7.85 1.26 0.00 1.52
642 662 3.650950 AACCACGCAGGGAGGCAT 61.651 61.111 0.42 0.00 43.89 4.40
682 702 2.808321 GGGAAACGTCGACCGCTC 60.808 66.667 10.58 3.46 41.42 5.03
684 704 2.127118 GAAACGTCGACCGCTCGA 60.127 61.111 10.58 0.00 46.85 4.04
750 800 1.137872 GAATGATCTCCAGCTCCACGT 59.862 52.381 0.00 0.00 0.00 4.49
826 952 0.457853 GTCGTCCGCTGAATGCTACA 60.458 55.000 0.00 0.00 40.11 2.74
881 1012 4.476410 CCGCATGCTGCTGTGCTG 62.476 66.667 17.13 14.84 42.25 4.41
904 1035 2.032528 CTGCGCCCAGGAGAAACA 59.967 61.111 4.18 0.00 41.23 2.83
905 1036 2.281484 TGCGCCCAGGAGAAACAC 60.281 61.111 4.18 0.00 0.00 3.32
906 1037 3.423154 GCGCCCAGGAGAAACACG 61.423 66.667 0.00 0.00 0.00 4.49
907 1038 2.342279 CGCCCAGGAGAAACACGA 59.658 61.111 0.00 0.00 0.00 4.35
908 1039 2.027625 CGCCCAGGAGAAACACGAC 61.028 63.158 0.00 0.00 0.00 4.34
909 1040 1.070786 GCCCAGGAGAAACACGACA 59.929 57.895 0.00 0.00 0.00 4.35
910 1041 0.534203 GCCCAGGAGAAACACGACAA 60.534 55.000 0.00 0.00 0.00 3.18
911 1042 1.512926 CCCAGGAGAAACACGACAAG 58.487 55.000 0.00 0.00 0.00 3.16
912 1043 1.512926 CCAGGAGAAACACGACAAGG 58.487 55.000 0.00 0.00 0.00 3.61
913 1044 0.868406 CAGGAGAAACACGACAAGGC 59.132 55.000 0.00 0.00 0.00 4.35
914 1045 0.468226 AGGAGAAACACGACAAGGCA 59.532 50.000 0.00 0.00 0.00 4.75
915 1046 0.868406 GGAGAAACACGACAAGGCAG 59.132 55.000 0.00 0.00 0.00 4.85
916 1047 0.868406 GAGAAACACGACAAGGCAGG 59.132 55.000 0.00 0.00 0.00 4.85
917 1048 0.468226 AGAAACACGACAAGGCAGGA 59.532 50.000 0.00 0.00 0.00 3.86
918 1049 1.134220 AGAAACACGACAAGGCAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
919 1050 1.002792 GAAACACGACAAGGCAGGAAC 60.003 52.381 0.00 0.00 0.00 3.62
920 1051 0.107410 AACACGACAAGGCAGGAACA 60.107 50.000 0.00 0.00 0.00 3.18
921 1052 0.108585 ACACGACAAGGCAGGAACAT 59.891 50.000 0.00 0.00 0.00 2.71
922 1053 1.238439 CACGACAAGGCAGGAACATT 58.762 50.000 0.00 0.00 0.00 2.71
923 1054 1.608590 CACGACAAGGCAGGAACATTT 59.391 47.619 0.00 0.00 0.00 2.32
924 1055 1.880027 ACGACAAGGCAGGAACATTTC 59.120 47.619 0.00 0.00 0.00 2.17
925 1056 1.879380 CGACAAGGCAGGAACATTTCA 59.121 47.619 0.00 0.00 0.00 2.69
926 1057 2.489329 CGACAAGGCAGGAACATTTCAT 59.511 45.455 0.00 0.00 0.00 2.57
927 1058 3.671433 CGACAAGGCAGGAACATTTCATG 60.671 47.826 0.00 0.00 43.81 3.07
936 1067 6.889301 CAGGAACATTTCATGCCTACATAT 57.111 37.500 0.00 0.00 34.49 1.78
937 1068 7.984422 CAGGAACATTTCATGCCTACATATA 57.016 36.000 0.00 0.00 34.49 0.86
938 1069 8.037382 CAGGAACATTTCATGCCTACATATAG 57.963 38.462 0.00 0.00 34.49 1.31
939 1070 7.879677 CAGGAACATTTCATGCCTACATATAGA 59.120 37.037 0.00 0.00 34.49 1.98
983 1122 4.554723 GCACTAACAGCAGTAACAACCAAG 60.555 45.833 0.00 0.00 0.00 3.61
991 1133 3.428862 GCAGTAACAACCAAGCAACAAGT 60.429 43.478 0.00 0.00 0.00 3.16
993 1135 5.677598 GCAGTAACAACCAAGCAACAAGTAA 60.678 40.000 0.00 0.00 0.00 2.24
1023 1165 3.057876 TGTCATACGGCCAACAATTCAAC 60.058 43.478 2.24 0.00 0.00 3.18
1105 1247 1.676635 CAGTACGTGGTCCCCGAGA 60.677 63.158 0.00 0.00 0.00 4.04
1233 1378 0.111253 CCTTGCAGAACTGGGACCTT 59.889 55.000 3.99 0.00 0.00 3.50
1271 2640 9.678941 ATTTATTCTCAAACTTCTTTCGGTTTC 57.321 29.630 0.00 0.00 34.01 2.78
1279 2648 1.153353 TCTTTCGGTTTCCATGTCGC 58.847 50.000 0.00 0.00 0.00 5.19
1293 2662 1.371595 TGTCGCCATGTGATGTGATG 58.628 50.000 0.00 0.00 0.00 3.07
1294 2663 1.066286 TGTCGCCATGTGATGTGATGA 60.066 47.619 0.00 0.00 0.00 2.92
1295 2664 2.009051 GTCGCCATGTGATGTGATGAA 58.991 47.619 0.00 0.00 0.00 2.57
1318 2785 5.551233 AGAAGTGGTCATTTCGATCTTTCA 58.449 37.500 0.00 0.00 33.02 2.69
1499 2966 3.075882 TGGTGGAAAATCAGGTCCTTGAT 59.924 43.478 0.00 0.00 39.42 2.57
1514 2981 0.953471 TTGATTGGAACGACCGGCTG 60.953 55.000 0.00 0.00 42.61 4.85
1610 3078 2.102578 CCCTCTAGGTTTTTGCCATGG 58.897 52.381 7.63 7.63 0.00 3.66
1620 3088 0.950836 TTTGCCATGGTCTGTTCGTG 59.049 50.000 14.67 0.00 0.00 4.35
1622 3090 1.003839 GCCATGGTCTGTTCGTGGA 60.004 57.895 14.67 0.00 42.36 4.02
1623 3091 1.021390 GCCATGGTCTGTTCGTGGAG 61.021 60.000 14.67 0.00 42.36 3.86
1624 3092 1.021390 CCATGGTCTGTTCGTGGAGC 61.021 60.000 2.57 0.00 42.36 4.70
1629 3097 0.247736 GTCTGTTCGTGGAGCTGGAT 59.752 55.000 0.00 0.00 0.00 3.41
1631 3099 0.036952 CTGTTCGTGGAGCTGGATGT 60.037 55.000 0.00 0.00 0.00 3.06
1632 3100 0.396435 TGTTCGTGGAGCTGGATGTT 59.604 50.000 0.00 0.00 0.00 2.71
1633 3101 0.798776 GTTCGTGGAGCTGGATGTTG 59.201 55.000 0.00 0.00 0.00 3.33
1634 3102 0.321564 TTCGTGGAGCTGGATGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
1655 3332 3.120442 GGCACGAAAAACAGCGTAAGTAT 60.120 43.478 0.00 0.00 38.92 2.12
1656 3333 4.091800 GGCACGAAAAACAGCGTAAGTATA 59.908 41.667 0.00 0.00 38.92 1.47
1811 4707 9.307121 CTTAGACTTGTCATGAAACCTATACAG 57.693 37.037 0.00 0.00 0.00 2.74
1827 4723 5.639506 CCTATACAGCCAGTTATGCATGTAC 59.360 44.000 10.16 7.56 30.69 2.90
1828 4724 3.634397 ACAGCCAGTTATGCATGTACT 57.366 42.857 10.16 9.89 0.00 2.73
1829 4725 3.535561 ACAGCCAGTTATGCATGTACTC 58.464 45.455 10.16 2.38 0.00 2.59
1830 4726 2.874701 CAGCCAGTTATGCATGTACTCC 59.125 50.000 10.16 6.23 0.00 3.85
1831 4727 2.158755 AGCCAGTTATGCATGTACTCCC 60.159 50.000 10.16 5.91 0.00 4.30
1832 4728 2.158755 GCCAGTTATGCATGTACTCCCT 60.159 50.000 10.16 0.00 0.00 4.20
1833 4729 3.733337 CCAGTTATGCATGTACTCCCTC 58.267 50.000 10.16 0.00 0.00 4.30
1834 4730 3.384668 CAGTTATGCATGTACTCCCTCG 58.615 50.000 10.16 0.00 0.00 4.63
1835 4731 2.365617 AGTTATGCATGTACTCCCTCGG 59.634 50.000 10.16 0.00 0.00 4.63
1836 4732 2.082140 TATGCATGTACTCCCTCGGT 57.918 50.000 10.16 0.00 0.00 4.69
1837 4733 0.753262 ATGCATGTACTCCCTCGGTC 59.247 55.000 0.00 0.00 0.00 4.79
1838 4734 1.327690 TGCATGTACTCCCTCGGTCC 61.328 60.000 0.00 0.00 0.00 4.46
1839 4735 1.734137 CATGTACTCCCTCGGTCCG 59.266 63.158 4.39 4.39 0.00 4.79
1840 4736 0.750546 CATGTACTCCCTCGGTCCGA 60.751 60.000 14.54 14.54 0.00 4.55
1841 4737 0.033796 ATGTACTCCCTCGGTCCGAA 60.034 55.000 16.23 0.00 34.74 4.30
1842 4738 0.251297 TGTACTCCCTCGGTCCGAAA 60.251 55.000 16.23 3.03 34.74 3.46
1843 4739 0.890683 GTACTCCCTCGGTCCGAAAA 59.109 55.000 16.23 2.66 34.74 2.29
1844 4740 1.479730 GTACTCCCTCGGTCCGAAAAT 59.520 52.381 16.23 2.15 34.74 1.82
1845 4741 1.856629 ACTCCCTCGGTCCGAAAATA 58.143 50.000 16.23 0.42 34.74 1.40
1846 4742 2.181975 ACTCCCTCGGTCCGAAAATAA 58.818 47.619 16.23 0.00 34.74 1.40
1847 4743 2.167900 ACTCCCTCGGTCCGAAAATAAG 59.832 50.000 16.23 10.65 34.74 1.73
1848 4744 2.167900 CTCCCTCGGTCCGAAAATAAGT 59.832 50.000 16.23 0.00 34.74 2.24
1849 4745 2.093869 TCCCTCGGTCCGAAAATAAGTG 60.094 50.000 16.23 0.47 34.74 3.16
1850 4746 2.354403 CCCTCGGTCCGAAAATAAGTGT 60.354 50.000 16.23 0.00 34.74 3.55
1851 4747 2.928116 CCTCGGTCCGAAAATAAGTGTC 59.072 50.000 16.23 0.00 34.74 3.67
1852 4748 3.368116 CCTCGGTCCGAAAATAAGTGTCT 60.368 47.826 16.23 0.00 34.74 3.41
1853 4749 3.841643 TCGGTCCGAAAATAAGTGTCTC 58.158 45.455 12.68 0.00 31.06 3.36
1854 4750 3.256383 TCGGTCCGAAAATAAGTGTCTCA 59.744 43.478 12.68 0.00 31.06 3.27
1855 4751 3.991773 CGGTCCGAAAATAAGTGTCTCAA 59.008 43.478 4.91 0.00 0.00 3.02
1856 4752 4.630069 CGGTCCGAAAATAAGTGTCTCAAT 59.370 41.667 4.91 0.00 0.00 2.57
1857 4753 5.121768 CGGTCCGAAAATAAGTGTCTCAATT 59.878 40.000 4.91 0.00 0.00 2.32
1858 4754 6.348213 CGGTCCGAAAATAAGTGTCTCAATTT 60.348 38.462 4.91 0.00 0.00 1.82
1859 4755 7.148540 CGGTCCGAAAATAAGTGTCTCAATTTA 60.149 37.037 4.91 0.00 0.00 1.40
1888 4809 7.223193 TGGTAATAATCCGTTTATGACTTCACG 59.777 37.037 3.94 0.00 33.58 4.35
2031 6890 0.321653 ACTTCCATTCGGACTGTGCC 60.322 55.000 0.00 0.00 42.67 5.01
2032 6891 1.002624 TTCCATTCGGACTGTGCCC 60.003 57.895 0.00 0.00 42.67 5.36
2168 7027 9.811995 ATTACCAACTTTTGAGTTTTTCTTACC 57.188 29.630 0.00 0.00 0.00 2.85
2211 7223 4.154737 CCGCCAGGTCATAACATATCAATG 59.845 45.833 0.00 0.00 39.17 2.82
2276 7291 4.091549 TCCCTAAACTGATGAGTAACCGT 58.908 43.478 0.00 0.00 0.00 4.83
2297 7312 8.786826 ACCGTTTCAATACATTTCTCTTATCA 57.213 30.769 0.00 0.00 0.00 2.15
2298 7313 9.396022 ACCGTTTCAATACATTTCTCTTATCAT 57.604 29.630 0.00 0.00 0.00 2.45
2336 7353 3.190079 GCGCAGAGACATTCTATGTGAA 58.810 45.455 14.00 0.00 45.93 3.18
2472 7731 7.202102 CCCAAGCTATAATCAACTACTACCCTT 60.202 40.741 0.00 0.00 0.00 3.95
2482 7741 1.202769 TACTACCCTTGGTGCCCCAC 61.203 60.000 0.00 0.00 41.67 4.61
3050 8427 5.845103 TGTGAATAAGTTCGGTGAGTGTAA 58.155 37.500 0.00 0.00 37.15 2.41
3052 8429 5.347907 GTGAATAAGTTCGGTGAGTGTAAGG 59.652 44.000 0.00 0.00 37.15 2.69
3055 8432 2.595238 AGTTCGGTGAGTGTAAGGTCT 58.405 47.619 0.00 0.00 0.00 3.85
3089 8470 6.426937 AGCGACTTTGATTGTACTGTGTAAAT 59.573 34.615 0.00 0.00 0.00 1.40
3157 8538 3.246880 GGGGGTCCCGAACTGTGT 61.247 66.667 0.48 0.00 36.85 3.72
3205 8586 2.106857 AGGGACACGATGTTTTACCCAA 59.893 45.455 0.00 0.00 34.20 4.12
3322 8703 2.546162 GGCTAAACCCTAGAAGCTAGCG 60.546 54.545 9.55 0.00 34.02 4.26
3628 9009 1.447140 GAGTCCGGTGCGCATGTTA 60.447 57.895 15.91 0.00 0.00 2.41
3719 9101 3.761218 TCCGGCTCTGCAAAATAAATTCA 59.239 39.130 0.00 0.00 0.00 2.57
3778 9160 4.994217 TCAATCTGCTGACGTATTTTGTGA 59.006 37.500 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.604626 GCTTCATAATTTATACTGCACAATCTC 57.395 33.333 0.00 0.00 0.00 2.75
2 3 7.059945 GCGCTTCATAATTTATACTGCACAATC 59.940 37.037 0.00 0.00 0.00 2.67
3 4 6.857964 GCGCTTCATAATTTATACTGCACAAT 59.142 34.615 0.00 0.00 0.00 2.71
6 7 4.840772 CGCGCTTCATAATTTATACTGCAC 59.159 41.667 5.56 0.00 0.00 4.57
9 10 4.840772 GTGCGCGCTTCATAATTTATACTG 59.159 41.667 33.29 0.00 0.00 2.74
10 11 4.509970 TGTGCGCGCTTCATAATTTATACT 59.490 37.500 33.29 0.00 0.00 2.12
11 12 4.768145 TGTGCGCGCTTCATAATTTATAC 58.232 39.130 33.29 17.06 0.00 1.47
12 13 5.411083 TTGTGCGCGCTTCATAATTTATA 57.589 34.783 33.29 10.55 0.00 0.98
13 14 3.961477 TGTGCGCGCTTCATAATTTAT 57.039 38.095 33.29 0.00 0.00 1.40
14 15 3.748868 TTGTGCGCGCTTCATAATTTA 57.251 38.095 33.29 11.93 0.00 1.40
15 16 2.627863 TTGTGCGCGCTTCATAATTT 57.372 40.000 33.29 0.00 0.00 1.82
16 17 2.541588 GGATTGTGCGCGCTTCATAATT 60.542 45.455 33.29 14.99 0.00 1.40
17 18 1.002468 GGATTGTGCGCGCTTCATAAT 60.002 47.619 33.29 20.99 0.00 1.28
18 19 0.376852 GGATTGTGCGCGCTTCATAA 59.623 50.000 33.29 16.94 0.00 1.90
19 20 1.761244 CGGATTGTGCGCGCTTCATA 61.761 55.000 33.29 19.35 0.00 2.15
20 21 2.793946 GGATTGTGCGCGCTTCAT 59.206 55.556 33.29 20.10 0.00 2.57
21 22 3.787676 CGGATTGTGCGCGCTTCA 61.788 61.111 33.29 26.37 0.00 3.02
22 23 4.520846 CCGGATTGTGCGCGCTTC 62.521 66.667 33.29 24.10 0.00 3.86
30 31 1.656818 ATTTGAGGCGCCGGATTGTG 61.657 55.000 23.20 0.00 0.00 3.33
31 32 0.965363 AATTTGAGGCGCCGGATTGT 60.965 50.000 23.20 0.68 0.00 2.71
32 33 0.173255 AAATTTGAGGCGCCGGATTG 59.827 50.000 23.20 0.00 0.00 2.67
33 34 0.173255 CAAATTTGAGGCGCCGGATT 59.827 50.000 23.20 16.29 0.00 3.01
34 35 1.809207 CAAATTTGAGGCGCCGGAT 59.191 52.632 23.20 10.90 0.00 4.18
35 36 2.988688 GCAAATTTGAGGCGCCGGA 61.989 57.895 23.20 8.86 0.00 5.14
36 37 2.506881 GCAAATTTGAGGCGCCGG 60.507 61.111 23.20 0.00 0.00 6.13
37 38 1.346378 CTTGCAAATTTGAGGCGCCG 61.346 55.000 23.20 4.86 0.00 6.46
38 39 0.319813 ACTTGCAAATTTGAGGCGCC 60.320 50.000 21.89 21.89 0.00 6.53
39 40 1.501169 AACTTGCAAATTTGAGGCGC 58.499 45.000 22.31 0.00 0.00 6.53
40 41 4.534794 AAAAACTTGCAAATTTGAGGCG 57.465 36.364 22.31 8.67 0.00 5.52
41 42 7.236474 GCTATAAAAACTTGCAAATTTGAGGC 58.764 34.615 22.31 7.20 0.00 4.70
42 43 7.116233 ACGCTATAAAAACTTGCAAATTTGAGG 59.884 33.333 22.31 12.11 0.00 3.86
43 44 8.006741 ACGCTATAAAAACTTGCAAATTTGAG 57.993 30.769 22.31 13.16 0.00 3.02
44 45 7.938563 ACGCTATAAAAACTTGCAAATTTGA 57.061 28.000 22.31 2.00 0.00 2.69
45 46 8.986039 AAACGCTATAAAAACTTGCAAATTTG 57.014 26.923 14.03 14.03 0.00 2.32
46 47 9.995957 AAAAACGCTATAAAAACTTGCAAATTT 57.004 22.222 0.00 0.00 0.00 1.82
47 48 9.644993 GAAAAACGCTATAAAAACTTGCAAATT 57.355 25.926 0.00 0.00 0.00 1.82
48 49 8.821894 TGAAAAACGCTATAAAAACTTGCAAAT 58.178 25.926 0.00 0.00 0.00 2.32
49 50 8.186178 TGAAAAACGCTATAAAAACTTGCAAA 57.814 26.923 0.00 0.00 0.00 3.68
50 51 7.515998 GCTGAAAAACGCTATAAAAACTTGCAA 60.516 33.333 0.00 0.00 0.00 4.08
51 52 6.074569 GCTGAAAAACGCTATAAAAACTTGCA 60.075 34.615 0.00 0.00 0.00 4.08
52 53 6.289160 GCTGAAAAACGCTATAAAAACTTGC 58.711 36.000 0.00 0.00 0.00 4.01
53 54 6.504821 CGCTGAAAAACGCTATAAAAACTTG 58.495 36.000 0.00 0.00 0.00 3.16
54 55 6.669485 CGCTGAAAAACGCTATAAAAACTT 57.331 33.333 0.00 0.00 0.00 2.66
76 77 4.639171 AAAAAGGTTGGGCGCGCG 62.639 61.111 28.44 28.44 0.00 6.86
91 92 2.546195 AAACAGTGTGCGCGTAAAAA 57.454 40.000 8.43 0.00 0.00 1.94
92 93 2.546195 AAAACAGTGTGCGCGTAAAA 57.454 40.000 8.43 0.00 0.00 1.52
93 94 2.350804 TGTAAAACAGTGTGCGCGTAAA 59.649 40.909 8.43 0.00 0.00 2.01
94 95 1.931841 TGTAAAACAGTGTGCGCGTAA 59.068 42.857 8.43 0.00 0.00 3.18
95 96 1.523515 CTGTAAAACAGTGTGCGCGTA 59.476 47.619 8.43 0.00 41.19 4.42
96 97 0.303493 CTGTAAAACAGTGTGCGCGT 59.697 50.000 8.43 0.00 41.19 6.01
97 98 3.057018 CTGTAAAACAGTGTGCGCG 57.943 52.632 0.00 0.00 41.19 6.86
106 107 1.202710 TCCGGCAGAAGCTGTAAAACA 60.203 47.619 0.00 0.00 45.95 2.83
107 108 1.464997 CTCCGGCAGAAGCTGTAAAAC 59.535 52.381 0.00 0.00 45.95 2.43
108 109 1.808411 CTCCGGCAGAAGCTGTAAAA 58.192 50.000 0.00 0.00 45.95 1.52
109 110 0.673644 GCTCCGGCAGAAGCTGTAAA 60.674 55.000 5.64 0.00 45.95 2.01
110 111 1.079127 GCTCCGGCAGAAGCTGTAA 60.079 57.895 5.64 0.00 45.95 2.41
111 112 1.544825 AAGCTCCGGCAGAAGCTGTA 61.545 55.000 15.49 0.00 45.95 2.74
112 113 2.403132 AAAGCTCCGGCAGAAGCTGT 62.403 55.000 15.49 7.90 45.95 4.40
113 114 1.642952 GAAAGCTCCGGCAGAAGCTG 61.643 60.000 15.49 0.00 46.97 4.24
114 115 1.376553 GAAAGCTCCGGCAGAAGCT 60.377 57.895 9.49 9.49 41.70 3.74
115 116 2.402572 GGAAAGCTCCGGCAGAAGC 61.403 63.158 4.73 4.73 41.70 3.86
116 117 3.896479 GGAAAGCTCCGGCAGAAG 58.104 61.111 0.00 0.00 41.70 2.85
125 126 3.894547 TTGGGGCGTCGGAAAGCTC 62.895 63.158 6.66 2.86 0.00 4.09
126 127 2.969300 TTTTGGGGCGTCGGAAAGCT 62.969 55.000 6.66 0.00 0.00 3.74
127 128 2.077821 TTTTTGGGGCGTCGGAAAGC 62.078 55.000 0.00 0.00 0.00 3.51
128 129 2.034607 TTTTTGGGGCGTCGGAAAG 58.965 52.632 0.00 0.00 0.00 2.62
129 130 4.254721 TTTTTGGGGCGTCGGAAA 57.745 50.000 0.00 0.00 0.00 3.13
143 144 3.044286 CCACGCGTTAAAATCCGTTTTT 58.956 40.909 10.22 0.00 40.59 1.94
144 145 2.652795 CCACGCGTTAAAATCCGTTTT 58.347 42.857 10.22 0.00 40.48 2.43
145 146 1.663730 GCCACGCGTTAAAATCCGTTT 60.664 47.619 10.22 0.00 0.00 3.60
146 147 0.110101 GCCACGCGTTAAAATCCGTT 60.110 50.000 10.22 0.00 0.00 4.44
147 148 1.498611 GCCACGCGTTAAAATCCGT 59.501 52.632 10.22 0.00 0.00 4.69
148 149 1.226184 GGCCACGCGTTAAAATCCG 60.226 57.895 10.22 0.00 0.00 4.18
149 150 1.138036 GGGCCACGCGTTAAAATCC 59.862 57.895 10.22 4.26 0.00 3.01
150 151 0.179174 CTGGGCCACGCGTTAAAATC 60.179 55.000 10.22 0.00 0.00 2.17
151 152 0.891904 ACTGGGCCACGCGTTAAAAT 60.892 50.000 10.22 0.00 0.00 1.82
152 153 1.102222 AACTGGGCCACGCGTTAAAA 61.102 50.000 10.22 0.00 0.00 1.52
153 154 1.102222 AAACTGGGCCACGCGTTAAA 61.102 50.000 10.22 0.00 0.00 1.52
154 155 1.102222 AAAACTGGGCCACGCGTTAA 61.102 50.000 10.22 0.00 0.00 2.01
155 156 1.102222 AAAAACTGGGCCACGCGTTA 61.102 50.000 10.22 0.00 0.00 3.18
156 157 2.419739 AAAAACTGGGCCACGCGTT 61.420 52.632 10.22 2.27 0.00 4.84
157 158 2.831284 AAAAACTGGGCCACGCGT 60.831 55.556 5.58 5.58 0.00 6.01
158 159 2.354539 CAAAAACTGGGCCACGCG 60.355 61.111 0.00 3.53 0.00 6.01
159 160 2.028925 CCAAAAACTGGGCCACGC 59.971 61.111 0.00 0.00 42.17 5.34
166 167 1.463553 AAGAGGCGCCCAAAAACTGG 61.464 55.000 26.15 0.00 45.97 4.00
167 168 0.318955 CAAGAGGCGCCCAAAAACTG 60.319 55.000 26.15 7.36 0.00 3.16
168 169 1.463553 CCAAGAGGCGCCCAAAAACT 61.464 55.000 26.15 10.33 0.00 2.66
169 170 1.006220 CCAAGAGGCGCCCAAAAAC 60.006 57.895 26.15 8.02 0.00 2.43
170 171 1.152652 TCCAAGAGGCGCCCAAAAA 60.153 52.632 26.15 1.08 33.74 1.94
171 172 1.603455 CTCCAAGAGGCGCCCAAAA 60.603 57.895 26.15 2.93 33.74 2.44
172 173 1.852157 ATCTCCAAGAGGCGCCCAAA 61.852 55.000 26.15 1.70 33.74 3.28
173 174 2.300967 ATCTCCAAGAGGCGCCCAA 61.301 57.895 26.15 0.88 33.74 4.12
174 175 2.688666 ATCTCCAAGAGGCGCCCA 60.689 61.111 26.15 0.00 33.74 5.36
175 176 2.203126 CATCTCCAAGAGGCGCCC 60.203 66.667 26.15 15.34 33.74 6.13
176 177 2.899339 GCATCTCCAAGAGGCGCC 60.899 66.667 21.89 21.89 42.34 6.53
243 244 5.359009 ACAGACCATCATGAATGTCAAATCC 59.641 40.000 22.60 3.50 33.13 3.01
268 269 4.668576 TTAGACTTGAGCAGCGAATTTG 57.331 40.909 0.00 0.00 0.00 2.32
318 319 3.120991 GCTCTACGCACAAGTTACACAAG 60.121 47.826 0.00 0.00 38.92 3.16
337 338 6.490534 GTGAAGAAATAGCTTTATGGTGCTC 58.509 40.000 0.00 0.00 40.35 4.26
367 368 3.250744 GTGTCTTATAGCTGCGTGTGAA 58.749 45.455 0.00 0.00 0.00 3.18
371 372 1.134818 TGGGTGTCTTATAGCTGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
383 384 4.261994 GCAACAACATGTTTATGGGTGTCT 60.262 41.667 8.77 0.00 38.77 3.41
391 392 5.621197 TTCGCTAGCAACAACATGTTTAT 57.379 34.783 16.45 0.00 38.77 1.40
392 393 5.180304 TGATTCGCTAGCAACAACATGTTTA 59.820 36.000 16.45 0.00 38.77 2.01
414 415 4.074259 CTGACCATCCAATCACAAGTTGA 58.926 43.478 10.54 0.00 39.11 3.18
415 416 4.074259 TCTGACCATCCAATCACAAGTTG 58.926 43.478 0.00 0.00 0.00 3.16
416 417 4.330250 CTCTGACCATCCAATCACAAGTT 58.670 43.478 0.00 0.00 0.00 2.66
417 418 3.307975 CCTCTGACCATCCAATCACAAGT 60.308 47.826 0.00 0.00 0.00 3.16
418 419 3.054875 TCCTCTGACCATCCAATCACAAG 60.055 47.826 0.00 0.00 0.00 3.16
419 420 2.912295 TCCTCTGACCATCCAATCACAA 59.088 45.455 0.00 0.00 0.00 3.33
420 421 2.550175 TCCTCTGACCATCCAATCACA 58.450 47.619 0.00 0.00 0.00 3.58
421 422 3.054802 AGTTCCTCTGACCATCCAATCAC 60.055 47.826 0.00 0.00 0.00 3.06
422 423 3.184628 AGTTCCTCTGACCATCCAATCA 58.815 45.455 0.00 0.00 0.00 2.57
423 424 3.922171 AGTTCCTCTGACCATCCAATC 57.078 47.619 0.00 0.00 0.00 2.67
424 425 4.103785 CCATAGTTCCTCTGACCATCCAAT 59.896 45.833 0.00 0.00 0.00 3.16
425 426 3.455910 CCATAGTTCCTCTGACCATCCAA 59.544 47.826 0.00 0.00 0.00 3.53
426 427 3.041211 CCATAGTTCCTCTGACCATCCA 58.959 50.000 0.00 0.00 0.00 3.41
427 428 3.041946 ACCATAGTTCCTCTGACCATCC 58.958 50.000 0.00 0.00 0.00 3.51
428 429 6.426646 AATACCATAGTTCCTCTGACCATC 57.573 41.667 0.00 0.00 0.00 3.51
429 430 5.308237 GGAATACCATAGTTCCTCTGACCAT 59.692 44.000 0.00 0.00 40.55 3.55
430 431 4.654262 GGAATACCATAGTTCCTCTGACCA 59.346 45.833 0.00 0.00 40.55 4.02
431 432 4.654262 TGGAATACCATAGTTCCTCTGACC 59.346 45.833 5.81 0.00 43.41 4.02
432 433 5.871396 TGGAATACCATAGTTCCTCTGAC 57.129 43.478 5.81 0.00 43.41 3.51
433 434 6.352737 GGTTTGGAATACCATAGTTCCTCTGA 60.353 42.308 5.81 0.00 46.34 3.27
434 435 5.823045 GGTTTGGAATACCATAGTTCCTCTG 59.177 44.000 5.81 0.00 46.34 3.35
435 436 5.104067 GGGTTTGGAATACCATAGTTCCTCT 60.104 44.000 5.81 0.00 46.34 3.69
436 437 5.131067 GGGTTTGGAATACCATAGTTCCTC 58.869 45.833 5.81 0.00 46.34 3.71
437 438 4.542525 TGGGTTTGGAATACCATAGTTCCT 59.457 41.667 5.81 0.00 46.34 3.36
438 439 4.643334 GTGGGTTTGGAATACCATAGTTCC 59.357 45.833 0.00 0.00 46.34 3.62
439 440 4.334481 CGTGGGTTTGGAATACCATAGTTC 59.666 45.833 0.00 0.00 46.34 3.01
440 441 4.019141 TCGTGGGTTTGGAATACCATAGTT 60.019 41.667 0.00 0.00 46.34 2.24
441 442 3.520317 TCGTGGGTTTGGAATACCATAGT 59.480 43.478 0.00 0.00 46.34 2.12
442 443 4.127171 CTCGTGGGTTTGGAATACCATAG 58.873 47.826 0.00 0.00 46.34 2.23
443 444 3.118186 CCTCGTGGGTTTGGAATACCATA 60.118 47.826 0.00 0.00 46.34 2.74
444 445 2.356741 CCTCGTGGGTTTGGAATACCAT 60.357 50.000 0.00 0.00 46.34 3.55
445 446 1.003812 CCTCGTGGGTTTGGAATACCA 59.996 52.381 0.00 0.00 45.34 3.25
446 447 1.746470 CCTCGTGGGTTTGGAATACC 58.254 55.000 0.00 0.00 34.82 2.73
458 459 0.320771 CAGGACTTGAACCCTCGTGG 60.321 60.000 0.00 0.00 41.37 4.94
459 460 0.679505 TCAGGACTTGAACCCTCGTG 59.320 55.000 0.00 0.00 31.34 4.35
460 461 1.276421 CATCAGGACTTGAACCCTCGT 59.724 52.381 0.00 0.00 39.77 4.18
461 462 2.009042 GCATCAGGACTTGAACCCTCG 61.009 57.143 0.00 0.00 39.77 4.63
462 463 1.280421 AGCATCAGGACTTGAACCCTC 59.720 52.381 0.00 0.00 39.77 4.30
463 464 1.280421 GAGCATCAGGACTTGAACCCT 59.720 52.381 0.00 0.00 39.77 4.34
464 465 1.003580 TGAGCATCAGGACTTGAACCC 59.996 52.381 0.00 0.00 42.56 4.11
465 466 2.479566 TGAGCATCAGGACTTGAACC 57.520 50.000 0.00 0.00 42.56 3.62
477 478 5.008415 CAGTCCAGGAATAAATGTGAGCATC 59.992 44.000 0.00 0.00 33.50 3.91
478 479 4.885907 CAGTCCAGGAATAAATGTGAGCAT 59.114 41.667 0.00 0.00 36.80 3.79
479 480 4.263462 ACAGTCCAGGAATAAATGTGAGCA 60.263 41.667 0.00 0.00 0.00 4.26
480 481 4.265073 ACAGTCCAGGAATAAATGTGAGC 58.735 43.478 0.00 0.00 0.00 4.26
481 482 5.738909 AGACAGTCCAGGAATAAATGTGAG 58.261 41.667 0.00 0.00 0.00 3.51
482 483 5.762179 AGACAGTCCAGGAATAAATGTGA 57.238 39.130 0.00 0.00 0.00 3.58
483 484 6.824305 AAAGACAGTCCAGGAATAAATGTG 57.176 37.500 0.00 0.00 0.00 3.21
484 485 8.934023 TTTAAAGACAGTCCAGGAATAAATGT 57.066 30.769 0.00 0.00 0.00 2.71
538 539 9.769093 GAAACGAATACTATTTAGCAACATGTT 57.231 29.630 4.92 4.92 0.00 2.71
539 540 9.162764 AGAAACGAATACTATTTAGCAACATGT 57.837 29.630 0.00 0.00 0.00 3.21
540 541 9.988350 AAGAAACGAATACTATTTAGCAACATG 57.012 29.630 0.00 0.00 0.00 3.21
544 545 9.337091 GCAAAAGAAACGAATACTATTTAGCAA 57.663 29.630 0.00 0.00 0.00 3.91
545 546 8.726988 AGCAAAAGAAACGAATACTATTTAGCA 58.273 29.630 0.00 0.00 0.00 3.49
553 554 9.744468 AAAACAATAGCAAAAGAAACGAATACT 57.256 25.926 0.00 0.00 0.00 2.12
554 555 9.989394 GAAAACAATAGCAAAAGAAACGAATAC 57.011 29.630 0.00 0.00 0.00 1.89
691 711 2.031157 GTGACCATTTGAACCAGAACGG 60.031 50.000 0.00 0.00 42.50 4.44
696 732 3.828451 AGATTGGTGACCATTTGAACCAG 59.172 43.478 4.56 0.00 43.31 4.00
886 1017 2.747855 GTTTCTCCTGGGCGCAGG 60.748 66.667 37.31 37.31 43.59 4.85
902 1033 0.108585 ATGTTCCTGCCTTGTCGTGT 59.891 50.000 0.00 0.00 0.00 4.49
903 1034 1.238439 AATGTTCCTGCCTTGTCGTG 58.762 50.000 0.00 0.00 0.00 4.35
904 1035 1.880027 GAAATGTTCCTGCCTTGTCGT 59.120 47.619 0.00 0.00 0.00 4.34
905 1036 1.879380 TGAAATGTTCCTGCCTTGTCG 59.121 47.619 0.00 0.00 0.00 4.35
906 1037 3.841643 CATGAAATGTTCCTGCCTTGTC 58.158 45.455 0.00 0.00 40.20 3.18
907 1038 3.947910 CATGAAATGTTCCTGCCTTGT 57.052 42.857 0.00 0.00 40.20 3.16
920 1051 6.656693 GGCAGTTCTATATGTAGGCATGAAAT 59.343 38.462 0.00 0.00 36.58 2.17
921 1052 5.997746 GGCAGTTCTATATGTAGGCATGAAA 59.002 40.000 0.00 0.00 36.58 2.69
922 1053 5.071653 TGGCAGTTCTATATGTAGGCATGAA 59.928 40.000 0.00 0.00 36.58 2.57
923 1054 4.592778 TGGCAGTTCTATATGTAGGCATGA 59.407 41.667 0.00 0.00 36.58 3.07
924 1055 4.898320 TGGCAGTTCTATATGTAGGCATG 58.102 43.478 0.00 0.00 36.58 4.06
925 1056 5.567037 TTGGCAGTTCTATATGTAGGCAT 57.433 39.130 0.00 0.00 39.03 4.40
926 1057 5.366482 TTTGGCAGTTCTATATGTAGGCA 57.634 39.130 0.00 0.00 0.00 4.75
927 1058 4.214332 GCTTTGGCAGTTCTATATGTAGGC 59.786 45.833 0.00 0.00 38.54 3.93
928 1059 4.449068 CGCTTTGGCAGTTCTATATGTAGG 59.551 45.833 0.00 0.00 38.60 3.18
929 1060 4.449068 CCGCTTTGGCAGTTCTATATGTAG 59.551 45.833 0.00 0.00 38.60 2.74
930 1061 4.377021 CCGCTTTGGCAGTTCTATATGTA 58.623 43.478 0.00 0.00 38.60 2.29
931 1062 3.206150 CCGCTTTGGCAGTTCTATATGT 58.794 45.455 0.00 0.00 38.60 2.29
932 1063 2.549754 CCCGCTTTGGCAGTTCTATATG 59.450 50.000 0.00 0.00 38.60 1.78
933 1064 2.438021 TCCCGCTTTGGCAGTTCTATAT 59.562 45.455 0.00 0.00 38.60 0.86
934 1065 1.834896 TCCCGCTTTGGCAGTTCTATA 59.165 47.619 0.00 0.00 38.60 1.31
935 1066 0.618458 TCCCGCTTTGGCAGTTCTAT 59.382 50.000 0.00 0.00 38.60 1.98
936 1067 0.036388 CTCCCGCTTTGGCAGTTCTA 60.036 55.000 0.00 0.00 38.60 2.10
937 1068 1.302832 CTCCCGCTTTGGCAGTTCT 60.303 57.895 0.00 0.00 38.60 3.01
938 1069 2.982744 GCTCCCGCTTTGGCAGTTC 61.983 63.158 0.00 0.00 38.60 3.01
939 1070 2.985847 GCTCCCGCTTTGGCAGTT 60.986 61.111 0.00 0.00 38.60 3.16
983 1122 3.067461 TGACATGGTTGGTTACTTGTTGC 59.933 43.478 0.00 0.00 0.00 4.17
991 1133 2.634600 GCCGTATGACATGGTTGGTTA 58.365 47.619 0.00 0.00 35.49 2.85
993 1135 0.393808 GGCCGTATGACATGGTTGGT 60.394 55.000 0.00 0.00 35.49 3.67
1279 2648 4.095932 CCACTTCTTCATCACATCACATGG 59.904 45.833 0.00 0.00 33.60 3.66
1293 2662 6.147821 TGAAAGATCGAAATGACCACTTCTTC 59.852 38.462 0.00 0.00 0.00 2.87
1294 2663 5.997746 TGAAAGATCGAAATGACCACTTCTT 59.002 36.000 0.00 0.00 0.00 2.52
1295 2664 5.409826 GTGAAAGATCGAAATGACCACTTCT 59.590 40.000 0.00 0.00 0.00 2.85
1318 2785 2.034066 CATGTCCAACGGCCTGGT 59.966 61.111 10.68 0.00 37.74 4.00
1499 2966 2.342279 CTCAGCCGGTCGTTCCAA 59.658 61.111 1.90 0.00 35.57 3.53
1514 2981 2.671682 GGTTCCACCAGGAGGCTC 59.328 66.667 5.78 5.78 46.74 4.70
1534 3001 1.284408 GCATAGGCTCTCTCCGACG 59.716 63.158 0.00 0.00 36.96 5.12
1610 3078 0.247736 ATCCAGCTCCACGAACAGAC 59.752 55.000 0.00 0.00 0.00 3.51
1620 3088 2.401766 CGTGCCAACATCCAGCTCC 61.402 63.158 0.00 0.00 0.00 4.70
1622 3090 0.537143 TTTCGTGCCAACATCCAGCT 60.537 50.000 0.00 0.00 0.00 4.24
1623 3091 0.313672 TTTTCGTGCCAACATCCAGC 59.686 50.000 0.00 0.00 0.00 4.85
1624 3092 2.223688 TGTTTTTCGTGCCAACATCCAG 60.224 45.455 0.00 0.00 0.00 3.86
1629 3097 0.524392 CGCTGTTTTTCGTGCCAACA 60.524 50.000 0.00 0.00 0.00 3.33
1631 3099 1.015109 TACGCTGTTTTTCGTGCCAA 58.985 45.000 0.00 0.00 39.46 4.52
1632 3100 1.003331 CTTACGCTGTTTTTCGTGCCA 60.003 47.619 0.00 0.00 39.46 4.92
1633 3101 1.003223 ACTTACGCTGTTTTTCGTGCC 60.003 47.619 0.00 0.00 39.46 5.01
1634 3102 2.378507 ACTTACGCTGTTTTTCGTGC 57.621 45.000 0.00 0.00 39.46 5.34
1655 3332 6.239176 CCAGTGGAAACCTAAAAATGCAACTA 60.239 38.462 1.68 0.00 0.00 2.24
1656 3333 5.453198 CCAGTGGAAACCTAAAAATGCAACT 60.453 40.000 1.68 0.00 0.00 3.16
1811 4707 2.158755 AGGGAGTACATGCATAACTGGC 60.159 50.000 16.37 5.41 0.00 4.85
1827 4723 2.167900 ACTTATTTTCGGACCGAGGGAG 59.832 50.000 17.51 13.50 37.14 4.30
1828 4724 2.093869 CACTTATTTTCGGACCGAGGGA 60.094 50.000 17.51 7.50 37.14 4.20
1829 4725 2.277084 CACTTATTTTCGGACCGAGGG 58.723 52.381 17.51 1.09 37.14 4.30
1830 4726 2.928116 GACACTTATTTTCGGACCGAGG 59.072 50.000 17.51 7.03 37.14 4.63
1831 4727 3.846360 AGACACTTATTTTCGGACCGAG 58.154 45.455 17.51 6.85 37.14 4.63
1832 4728 3.256383 TGAGACACTTATTTTCGGACCGA 59.744 43.478 13.88 13.88 0.00 4.69
1833 4729 3.581755 TGAGACACTTATTTTCGGACCG 58.418 45.455 7.84 7.84 0.00 4.79
1834 4730 6.496338 AATTGAGACACTTATTTTCGGACC 57.504 37.500 0.00 0.00 0.00 4.46
1835 4731 9.887406 TTTAAATTGAGACACTTATTTTCGGAC 57.113 29.630 0.00 0.00 0.00 4.79
1875 4771 4.693095 TGTATGCTTGCGTGAAGTCATAAA 59.307 37.500 0.00 6.99 34.88 1.40
1888 4809 2.357009 CCATCTGTCCTTGTATGCTTGC 59.643 50.000 0.00 0.00 0.00 4.01
1977 4919 2.230660 AGTACCAAGCAAGAAAGTGCC 58.769 47.619 0.00 0.00 46.14 5.01
2032 6891 4.738998 TGCAGCCAATGGGGTCCG 62.739 66.667 0.00 0.00 44.97 4.79
2186 7045 0.249699 TATGTTATGACCTGGCGGCG 60.250 55.000 0.51 0.51 0.00 6.46
2238 7250 7.124147 CAGTTTAGGGATTTTATCATGGGTTGT 59.876 37.037 0.00 0.00 0.00 3.32
2242 7254 7.725397 TCATCAGTTTAGGGATTTTATCATGGG 59.275 37.037 0.00 0.00 0.00 4.00
2254 7266 4.091549 ACGGTTACTCATCAGTTTAGGGA 58.908 43.478 0.00 0.00 33.62 4.20
2295 7310 8.250332 TCTGCGCAACATAATATAGTATGATGA 58.750 33.333 25.50 10.60 36.74 2.92
2296 7311 8.411318 TCTGCGCAACATAATATAGTATGATG 57.589 34.615 23.24 21.51 37.34 3.07
2297 7312 8.470002 TCTCTGCGCAACATAATATAGTATGAT 58.530 33.333 23.24 11.41 35.74 2.45
2298 7313 7.755373 GTCTCTGCGCAACATAATATAGTATGA 59.245 37.037 23.24 0.00 35.74 2.15
2303 7320 6.957984 ATGTCTCTGCGCAACATAATATAG 57.042 37.500 21.45 2.15 32.05 1.31
2310 7327 2.105006 AGAATGTCTCTGCGCAACAT 57.895 45.000 18.15 18.15 35.20 2.71
2336 7353 1.945354 CTCTGCACCGGACCGTGTAT 61.945 60.000 9.46 0.00 36.08 2.29
2482 7741 2.819595 CCAAGACATGGTCCGGCG 60.820 66.667 0.00 0.00 44.85 6.46
2684 8051 9.337396 AGACAAGATCATACAAAGTTACAAACA 57.663 29.630 0.00 0.00 0.00 2.83
3050 8427 2.171840 AGTCGCTCACATACAAGACCT 58.828 47.619 0.00 0.00 0.00 3.85
3052 8429 3.987868 TCAAAGTCGCTCACATACAAGAC 59.012 43.478 0.00 0.00 0.00 3.01
3055 8432 4.754618 ACAATCAAAGTCGCTCACATACAA 59.245 37.500 0.00 0.00 0.00 2.41
3089 8470 6.869913 CCGACAATGGTACTCACTAAACTTTA 59.130 38.462 0.00 0.00 0.00 1.85
3096 8477 3.159472 ACACCGACAATGGTACTCACTA 58.841 45.455 0.00 0.00 41.38 2.74
3098 8479 2.288579 TGACACCGACAATGGTACTCAC 60.289 50.000 0.00 0.00 41.38 3.51
3157 8538 1.754803 CTGTTACCATCCGCCTAGACA 59.245 52.381 0.00 0.00 0.00 3.41
3205 8586 1.604378 CATCAAGAGGGCCCGAACT 59.396 57.895 18.44 14.73 0.00 3.01
3322 8703 5.815740 AGGACGAACAACAATCATACCATAC 59.184 40.000 0.00 0.00 0.00 2.39
3618 8999 0.742635 TGCCGAAGATAACATGCGCA 60.743 50.000 14.96 14.96 0.00 6.09
3628 9009 1.811860 GCCTTGCAATGCCGAAGAT 59.188 52.632 15.05 0.00 0.00 2.40
3719 9101 7.598759 ATTATTCTCTCTACGGTGGTATGTT 57.401 36.000 0.00 0.00 0.00 2.71
3941 9323 1.811965 CCCAAGCGTCACAATCAATGA 59.188 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.