Multiple sequence alignment - TraesCS6B01G412700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G412700 chr6B 100.000 3628 0 0 1 3628 686194613 686190986 0.000000e+00 6700.0
1 TraesCS6B01G412700 chr6D 90.565 2512 123 51 247 2714 451785651 451783210 0.000000e+00 3221.0
2 TraesCS6B01G412700 chr6D 91.892 1036 65 12 1692 2714 451854897 451855926 0.000000e+00 1430.0
3 TraesCS6B01G412700 chr6D 90.171 468 38 6 3164 3628 451782708 451782246 1.440000e-168 603.0
4 TraesCS6B01G412700 chr6D 88.962 453 18 7 533 961 451804431 451804875 6.900000e-147 531.0
5 TraesCS6B01G412700 chr6D 94.855 311 16 0 981 1291 451812835 451813145 1.510000e-133 486.0
6 TraesCS6B01G412700 chr6D 89.323 384 27 11 1297 1677 451854419 451854791 1.530000e-128 470.0
7 TraesCS6B01G412700 chr6D 85.545 422 43 11 2668 3083 451783300 451782891 3.350000e-115 425.0
8 TraesCS6B01G412700 chr6D 91.111 90 8 0 331 420 460882120 460882209 4.920000e-24 122.0
9 TraesCS6B01G412700 chr6A 88.851 2063 132 58 726 2714 597701417 597699379 0.000000e+00 2446.0
10 TraesCS6B01G412700 chr6A 89.867 375 34 4 3140 3511 597668281 597668654 2.530000e-131 479.0
11 TraesCS6B01G412700 chr6A 91.558 154 10 3 468 619 597703129 597702977 3.670000e-50 209.0
12 TraesCS6B01G412700 chr6A 90.083 121 12 0 3508 3628 597669075 597669195 1.350000e-34 158.0
13 TraesCS6B01G412700 chr6A 100.000 34 0 0 647 680 597701530 597701497 3.020000e-06 63.9
14 TraesCS6B01G412700 chrUn 82.245 1684 111 71 420 2016 99816244 99817826 0.000000e+00 1280.0
15 TraesCS6B01G412700 chrUn 89.617 732 53 16 2002 2714 99818191 99818918 0.000000e+00 909.0
16 TraesCS6B01G412700 chr7B 96.465 198 7 0 40 237 56584647 56584450 9.710000e-86 327.0
17 TraesCS6B01G412700 chr7B 95.455 198 9 0 40 237 625041893 625041696 2.100000e-82 316.0
18 TraesCS6B01G412700 chr7B 85.065 308 41 2 972 1279 678901064 678900762 3.520000e-80 309.0
19 TraesCS6B01G412700 chr7B 87.129 101 7 5 333 430 700788329 700788232 3.830000e-20 110.0
20 TraesCS6B01G412700 chr7B 75.294 170 39 3 1399 1565 41572359 41572528 1.080000e-10 78.7
21 TraesCS6B01G412700 chr1B 96.465 198 7 0 40 237 476755691 476755888 9.710000e-86 327.0
22 TraesCS6B01G412700 chr5B 95.960 198 8 0 40 237 623541569 623541766 4.520000e-84 322.0
23 TraesCS6B01G412700 chr5B 95.960 198 8 0 40 237 627139613 627139810 4.520000e-84 322.0
24 TraesCS6B01G412700 chr5B 87.059 85 7 4 242 324 507557859 507557941 3.860000e-15 93.5
25 TraesCS6B01G412700 chr2D 95.897 195 8 0 40 234 20081218 20081412 2.100000e-82 316.0
26 TraesCS6B01G412700 chr2D 95.455 198 9 0 40 237 90910219 90910416 2.100000e-82 316.0
27 TraesCS6B01G412700 chr2A 95.455 198 9 0 40 237 87558589 87558392 2.100000e-82 316.0
28 TraesCS6B01G412700 chr1D 95.455 198 9 0 40 237 363286084 363285887 2.100000e-82 316.0
29 TraesCS6B01G412700 chr1D 87.000 100 11 2 320 418 233893341 233893243 1.060000e-20 111.0
30 TraesCS6B01G412700 chr7D 75.175 572 107 22 1052 1618 90597814 90598355 1.680000e-58 237.0
31 TraesCS6B01G412700 chr7D 91.111 90 7 1 331 419 312573978 312574067 1.770000e-23 121.0
32 TraesCS6B01G412700 chr7D 90.769 65 5 1 248 312 617233025 617233088 6.450000e-13 86.1
33 TraesCS6B01G412700 chr7D 97.222 36 1 0 276 311 522502137 522502102 1.090000e-05 62.1
34 TraesCS6B01G412700 chr7A 92.708 96 6 1 324 419 341444431 341444525 1.760000e-28 137.0
35 TraesCS6B01G412700 chr5D 87.500 104 11 2 321 424 493132924 493132823 6.360000e-23 119.0
36 TraesCS6B01G412700 chr3D 90.217 92 8 1 331 421 497823338 497823429 6.360000e-23 119.0
37 TraesCS6B01G412700 chr3D 92.424 66 4 1 247 312 497823286 497823350 3.860000e-15 93.5
38 TraesCS6B01G412700 chr5A 89.362 94 9 1 331 424 616153116 616153024 2.290000e-22 117.0
39 TraesCS6B01G412700 chr4B 92.424 66 5 0 247 312 404853568 404853633 1.070000e-15 95.3
40 TraesCS6B01G412700 chr3B 92.537 67 4 1 250 316 803104351 803104416 1.070000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G412700 chr6B 686190986 686194613 3627 True 6700.000000 6700 100.000000 1 3628 1 chr6B.!!$R1 3627
1 TraesCS6B01G412700 chr6D 451782246 451785651 3405 True 1416.333333 3221 88.760333 247 3628 3 chr6D.!!$R1 3381
2 TraesCS6B01G412700 chr6D 451854419 451855926 1507 False 950.000000 1430 90.607500 1297 2714 2 chr6D.!!$F4 1417
3 TraesCS6B01G412700 chr6A 597699379 597703129 3750 True 906.300000 2446 93.469667 468 2714 3 chr6A.!!$R1 2246
4 TraesCS6B01G412700 chr6A 597668281 597669195 914 False 318.500000 479 89.975000 3140 3628 2 chr6A.!!$F1 488
5 TraesCS6B01G412700 chrUn 99816244 99818918 2674 False 1094.500000 1280 85.931000 420 2714 2 chrUn.!!$F1 2294
6 TraesCS6B01G412700 chr7D 90597814 90598355 541 False 237.000000 237 75.175000 1052 1618 1 chr7D.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.038801 GCAAAGGAGCAGCCAGTTTC 60.039 55.0 0.00 0.0 40.02 2.78 F
166 167 0.107897 TACCAATGTACAGCCCAGCG 60.108 55.0 0.33 0.0 0.00 5.18 F
717 2192 0.321122 GCAGGAGATAATGGGGCGAG 60.321 60.0 0.00 0.0 0.00 5.03 F
1329 2890 0.466372 AGCGGTCATCTCATCTCCGA 60.466 55.0 6.09 0.0 43.22 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 3030 0.183014 CATCCATGCCCAGCTTCTCT 59.817 55.000 0.0 0.0 0.00 3.10 R
2043 4118 0.618458 ATGGGCACGTTGTACCAGAT 59.382 50.000 0.0 0.0 36.27 2.90 R
2579 4688 3.067461 ACAAGCTGCCGAACATTTTACAA 59.933 39.130 0.0 0.0 0.00 2.41 R
3039 5156 1.142097 GAGGACTAGAAGCACCGGC 59.858 63.158 0.0 0.0 41.61 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.903820 ACTTACATTTTTAGATCCACATAAGGC 58.096 33.333 0.00 0.00 0.00 4.35
65 66 6.377327 ACATTTTTAGATCCACATAAGGCG 57.623 37.500 0.00 0.00 0.00 5.52
66 67 6.119536 ACATTTTTAGATCCACATAAGGCGA 58.880 36.000 0.00 0.00 0.00 5.54
67 68 6.038271 ACATTTTTAGATCCACATAAGGCGAC 59.962 38.462 0.00 0.00 0.00 5.19
68 69 3.746045 TTAGATCCACATAAGGCGACC 57.254 47.619 0.00 0.00 0.00 4.79
69 70 1.794714 AGATCCACATAAGGCGACCT 58.205 50.000 0.00 0.00 33.87 3.85
70 71 1.414181 AGATCCACATAAGGCGACCTG 59.586 52.381 0.00 0.00 32.13 4.00
71 72 1.139058 GATCCACATAAGGCGACCTGT 59.861 52.381 0.00 0.00 32.13 4.00
72 73 0.535335 TCCACATAAGGCGACCTGTC 59.465 55.000 0.00 0.00 32.13 3.51
73 74 0.249120 CCACATAAGGCGACCTGTCA 59.751 55.000 0.00 0.00 32.13 3.58
74 75 1.338674 CCACATAAGGCGACCTGTCAA 60.339 52.381 0.00 0.00 32.13 3.18
75 76 1.732259 CACATAAGGCGACCTGTCAAC 59.268 52.381 0.00 0.00 32.13 3.18
76 77 1.346395 ACATAAGGCGACCTGTCAACA 59.654 47.619 0.00 0.00 32.13 3.33
77 78 2.002586 CATAAGGCGACCTGTCAACAG 58.997 52.381 3.08 3.08 43.40 3.16
78 79 1.045407 TAAGGCGACCTGTCAACAGT 58.955 50.000 9.19 0.00 42.27 3.55
79 80 0.180406 AAGGCGACCTGTCAACAGTT 59.820 50.000 9.19 0.00 42.27 3.16
80 81 0.180406 AGGCGACCTGTCAACAGTTT 59.820 50.000 9.19 0.00 42.27 2.66
81 82 0.586802 GGCGACCTGTCAACAGTTTC 59.413 55.000 9.19 4.60 42.27 2.78
82 83 1.583054 GCGACCTGTCAACAGTTTCT 58.417 50.000 9.19 0.00 42.27 2.52
83 84 1.940613 GCGACCTGTCAACAGTTTCTT 59.059 47.619 9.19 0.00 42.27 2.52
84 85 2.354821 GCGACCTGTCAACAGTTTCTTT 59.645 45.455 9.19 0.00 42.27 2.52
85 86 3.546218 GCGACCTGTCAACAGTTTCTTTC 60.546 47.826 9.19 0.00 42.27 2.62
86 87 3.302480 CGACCTGTCAACAGTTTCTTTCG 60.302 47.826 9.19 4.07 42.27 3.46
87 88 2.354821 ACCTGTCAACAGTTTCTTTCGC 59.645 45.455 9.19 0.00 42.27 4.70
88 89 2.614057 CCTGTCAACAGTTTCTTTCGCT 59.386 45.455 9.19 0.00 42.27 4.93
89 90 3.807622 CCTGTCAACAGTTTCTTTCGCTA 59.192 43.478 9.19 0.00 42.27 4.26
90 91 4.084328 CCTGTCAACAGTTTCTTTCGCTAG 60.084 45.833 9.19 0.00 42.27 3.42
91 92 3.807622 TGTCAACAGTTTCTTTCGCTAGG 59.192 43.478 0.00 0.00 0.00 3.02
92 93 4.056050 GTCAACAGTTTCTTTCGCTAGGA 58.944 43.478 0.00 0.00 0.00 2.94
93 94 4.510340 GTCAACAGTTTCTTTCGCTAGGAA 59.490 41.667 0.00 0.00 0.00 3.36
94 95 5.007332 GTCAACAGTTTCTTTCGCTAGGAAA 59.993 40.000 0.00 0.00 42.23 3.13
102 103 1.656652 TTCGCTAGGAAAGATGCAGC 58.343 50.000 0.00 0.00 0.00 5.25
103 104 0.536724 TCGCTAGGAAAGATGCAGCA 59.463 50.000 4.07 0.00 32.46 4.41
104 105 1.066215 TCGCTAGGAAAGATGCAGCAA 60.066 47.619 4.07 0.00 32.46 3.91
105 106 1.739466 CGCTAGGAAAGATGCAGCAAA 59.261 47.619 4.07 0.00 32.46 3.68
106 107 2.223203 CGCTAGGAAAGATGCAGCAAAG 60.223 50.000 4.07 0.00 32.46 2.77
107 108 2.098770 GCTAGGAAAGATGCAGCAAAGG 59.901 50.000 4.07 0.00 32.46 3.11
108 109 2.592102 AGGAAAGATGCAGCAAAGGA 57.408 45.000 4.07 0.00 0.00 3.36
109 110 2.444421 AGGAAAGATGCAGCAAAGGAG 58.556 47.619 4.07 0.00 0.00 3.69
110 111 1.135170 GGAAAGATGCAGCAAAGGAGC 60.135 52.381 4.07 0.00 0.00 4.70
111 112 1.542915 GAAAGATGCAGCAAAGGAGCA 59.457 47.619 4.07 0.00 43.14 4.26
112 113 1.174783 AAGATGCAGCAAAGGAGCAG 58.825 50.000 4.07 0.00 42.14 4.24
113 114 1.139095 GATGCAGCAAAGGAGCAGC 59.861 57.895 0.00 0.00 45.86 5.25
114 115 2.280823 GATGCAGCAAAGGAGCAGCC 62.281 60.000 0.00 0.00 45.18 4.85
115 116 2.987547 GCAGCAAAGGAGCAGCCA 60.988 61.111 0.00 0.00 40.64 4.75
116 117 2.991076 GCAGCAAAGGAGCAGCCAG 61.991 63.158 0.00 0.00 40.64 4.85
117 118 1.602888 CAGCAAAGGAGCAGCCAGT 60.603 57.895 0.00 0.00 40.02 4.00
118 119 1.152368 AGCAAAGGAGCAGCCAGTT 59.848 52.632 0.00 0.00 40.02 3.16
119 120 0.468771 AGCAAAGGAGCAGCCAGTTT 60.469 50.000 0.00 0.00 40.02 2.66
120 121 0.038801 GCAAAGGAGCAGCCAGTTTC 60.039 55.000 0.00 0.00 40.02 2.78
121 122 0.600057 CAAAGGAGCAGCCAGTTTCC 59.400 55.000 0.00 0.00 40.02 3.13
122 123 0.185901 AAAGGAGCAGCCAGTTTCCA 59.814 50.000 0.74 0.00 40.02 3.53
123 124 0.185901 AAGGAGCAGCCAGTTTCCAA 59.814 50.000 0.74 0.00 40.02 3.53
124 125 0.251077 AGGAGCAGCCAGTTTCCAAG 60.251 55.000 0.74 0.00 40.02 3.61
125 126 0.250901 GGAGCAGCCAGTTTCCAAGA 60.251 55.000 0.00 0.00 36.34 3.02
126 127 1.615384 GGAGCAGCCAGTTTCCAAGAT 60.615 52.381 0.00 0.00 36.34 2.40
127 128 2.356125 GGAGCAGCCAGTTTCCAAGATA 60.356 50.000 0.00 0.00 36.34 1.98
128 129 3.347216 GAGCAGCCAGTTTCCAAGATAA 58.653 45.455 0.00 0.00 0.00 1.75
129 130 3.950395 GAGCAGCCAGTTTCCAAGATAAT 59.050 43.478 0.00 0.00 0.00 1.28
130 131 4.347607 AGCAGCCAGTTTCCAAGATAATT 58.652 39.130 0.00 0.00 0.00 1.40
131 132 4.159135 AGCAGCCAGTTTCCAAGATAATTG 59.841 41.667 0.00 0.00 0.00 2.32
132 133 4.678840 GCAGCCAGTTTCCAAGATAATTGG 60.679 45.833 0.01 0.01 40.87 3.16
133 134 4.463891 CAGCCAGTTTCCAAGATAATTGGT 59.536 41.667 6.53 0.00 40.40 3.67
134 135 5.047092 CAGCCAGTTTCCAAGATAATTGGTT 60.047 40.000 6.53 0.00 40.40 3.67
135 136 5.543790 AGCCAGTTTCCAAGATAATTGGTTT 59.456 36.000 6.53 0.00 40.40 3.27
136 137 5.639082 GCCAGTTTCCAAGATAATTGGTTTG 59.361 40.000 6.53 2.34 40.40 2.93
137 138 6.741240 GCCAGTTTCCAAGATAATTGGTTTGT 60.741 38.462 6.53 0.00 40.40 2.83
138 139 6.646240 CCAGTTTCCAAGATAATTGGTTTGTG 59.354 38.462 6.53 1.99 40.40 3.33
139 140 7.432869 CAGTTTCCAAGATAATTGGTTTGTGA 58.567 34.615 6.53 0.00 40.40 3.58
140 141 7.925483 CAGTTTCCAAGATAATTGGTTTGTGAA 59.075 33.333 6.53 0.00 40.40 3.18
141 142 8.143835 AGTTTCCAAGATAATTGGTTTGTGAAG 58.856 33.333 6.53 0.00 40.40 3.02
142 143 7.831691 TTCCAAGATAATTGGTTTGTGAAGA 57.168 32.000 6.53 0.00 40.40 2.87
143 144 7.452880 TCCAAGATAATTGGTTTGTGAAGAG 57.547 36.000 6.53 0.00 40.40 2.85
144 145 7.230747 TCCAAGATAATTGGTTTGTGAAGAGA 58.769 34.615 6.53 0.00 40.40 3.10
145 146 7.723616 TCCAAGATAATTGGTTTGTGAAGAGAA 59.276 33.333 6.53 0.00 40.40 2.87
146 147 8.359642 CCAAGATAATTGGTTTGTGAAGAGAAA 58.640 33.333 0.00 0.00 34.92 2.52
147 148 9.918630 CAAGATAATTGGTTTGTGAAGAGAAAT 57.081 29.630 0.00 0.00 0.00 2.17
150 151 9.788960 GATAATTGGTTTGTGAAGAGAAATACC 57.211 33.333 0.00 0.00 0.00 2.73
151 152 7.595819 AATTGGTTTGTGAAGAGAAATACCA 57.404 32.000 0.00 0.00 32.93 3.25
152 153 7.595819 ATTGGTTTGTGAAGAGAAATACCAA 57.404 32.000 0.00 0.00 45.32 3.67
153 154 7.595819 TTGGTTTGTGAAGAGAAATACCAAT 57.404 32.000 0.00 0.00 38.94 3.16
154 155 6.980593 TGGTTTGTGAAGAGAAATACCAATG 58.019 36.000 0.00 0.00 31.92 2.82
155 156 6.549364 TGGTTTGTGAAGAGAAATACCAATGT 59.451 34.615 0.00 0.00 31.92 2.71
156 157 7.721842 TGGTTTGTGAAGAGAAATACCAATGTA 59.278 33.333 0.00 0.00 31.92 2.29
157 158 8.021396 GGTTTGTGAAGAGAAATACCAATGTAC 58.979 37.037 0.00 0.00 0.00 2.90
158 159 8.564574 GTTTGTGAAGAGAAATACCAATGTACA 58.435 33.333 0.00 0.00 0.00 2.90
159 160 7.905604 TGTGAAGAGAAATACCAATGTACAG 57.094 36.000 0.33 0.00 0.00 2.74
160 161 6.371548 TGTGAAGAGAAATACCAATGTACAGC 59.628 38.462 0.33 0.00 0.00 4.40
161 162 5.880332 TGAAGAGAAATACCAATGTACAGCC 59.120 40.000 0.33 0.00 0.00 4.85
162 163 4.781934 AGAGAAATACCAATGTACAGCCC 58.218 43.478 0.33 0.00 0.00 5.19
163 164 4.227300 AGAGAAATACCAATGTACAGCCCA 59.773 41.667 0.33 0.00 0.00 5.36
164 165 4.526970 AGAAATACCAATGTACAGCCCAG 58.473 43.478 0.33 0.00 0.00 4.45
165 166 2.348411 ATACCAATGTACAGCCCAGC 57.652 50.000 0.33 0.00 0.00 4.85
166 167 0.107897 TACCAATGTACAGCCCAGCG 60.108 55.000 0.33 0.00 0.00 5.18
167 168 1.078497 CCAATGTACAGCCCAGCGA 60.078 57.895 0.33 0.00 0.00 4.93
168 169 1.091771 CCAATGTACAGCCCAGCGAG 61.092 60.000 0.33 0.00 0.00 5.03
169 170 1.091771 CAATGTACAGCCCAGCGAGG 61.092 60.000 0.33 0.00 37.03 4.63
182 183 2.430244 CGAGGCACGCACGTAGTT 60.430 61.111 0.00 0.00 41.61 2.24
183 184 2.434134 CGAGGCACGCACGTAGTTC 61.434 63.158 0.00 0.00 41.61 3.01
184 185 2.048503 AGGCACGCACGTAGTTCC 60.049 61.111 0.00 4.33 41.61 3.62
185 186 3.475774 GGCACGCACGTAGTTCCG 61.476 66.667 0.00 0.00 41.61 4.30
186 187 4.130281 GCACGCACGTAGTTCCGC 62.130 66.667 0.00 0.00 41.61 5.54
187 188 3.475774 CACGCACGTAGTTCCGCC 61.476 66.667 0.00 0.00 41.61 6.13
188 189 3.677648 ACGCACGTAGTTCCGCCT 61.678 61.111 0.00 0.00 41.61 5.52
189 190 2.879462 CGCACGTAGTTCCGCCTC 60.879 66.667 0.00 0.00 41.61 4.70
190 191 2.508663 GCACGTAGTTCCGCCTCC 60.509 66.667 0.00 0.00 41.61 4.30
191 192 3.003113 GCACGTAGTTCCGCCTCCT 62.003 63.158 0.00 0.00 41.61 3.69
192 193 1.139095 CACGTAGTTCCGCCTCCTC 59.861 63.158 0.00 0.00 41.61 3.71
193 194 2.050934 ACGTAGTTCCGCCTCCTCC 61.051 63.158 0.00 0.00 37.78 4.30
194 195 2.806237 GTAGTTCCGCCTCCTCCG 59.194 66.667 0.00 0.00 0.00 4.63
195 196 3.145551 TAGTTCCGCCTCCTCCGC 61.146 66.667 0.00 0.00 0.00 5.54
196 197 3.657038 TAGTTCCGCCTCCTCCGCT 62.657 63.158 0.00 0.00 0.00 5.52
197 198 4.516195 GTTCCGCCTCCTCCGCTC 62.516 72.222 0.00 0.00 0.00 5.03
212 213 2.962569 CTCCGGAGCACACTCGAA 59.037 61.111 20.67 0.00 44.48 3.71
213 214 1.513158 CTCCGGAGCACACTCGAAT 59.487 57.895 20.67 0.00 44.48 3.34
214 215 0.738975 CTCCGGAGCACACTCGAATA 59.261 55.000 20.67 0.00 44.48 1.75
215 216 1.134367 CTCCGGAGCACACTCGAATAA 59.866 52.381 20.67 0.00 44.48 1.40
216 217 1.546923 TCCGGAGCACACTCGAATAAA 59.453 47.619 0.00 0.00 44.48 1.40
217 218 2.028839 TCCGGAGCACACTCGAATAAAA 60.029 45.455 0.00 0.00 44.48 1.52
218 219 2.936498 CCGGAGCACACTCGAATAAAAT 59.064 45.455 0.00 0.00 44.48 1.82
219 220 3.001330 CCGGAGCACACTCGAATAAAATC 59.999 47.826 0.00 0.00 44.48 2.17
220 221 3.001330 CGGAGCACACTCGAATAAAATCC 59.999 47.826 0.00 0.00 44.48 3.01
221 222 3.312697 GGAGCACACTCGAATAAAATCCC 59.687 47.826 0.00 0.00 44.48 3.85
222 223 3.938963 GAGCACACTCGAATAAAATCCCA 59.061 43.478 0.00 0.00 32.04 4.37
223 224 4.331968 AGCACACTCGAATAAAATCCCAA 58.668 39.130 0.00 0.00 0.00 4.12
224 225 4.396166 AGCACACTCGAATAAAATCCCAAG 59.604 41.667 0.00 0.00 0.00 3.61
225 226 4.394920 GCACACTCGAATAAAATCCCAAGA 59.605 41.667 0.00 0.00 0.00 3.02
226 227 5.106317 GCACACTCGAATAAAATCCCAAGAA 60.106 40.000 0.00 0.00 0.00 2.52
227 228 6.546395 CACACTCGAATAAAATCCCAAGAAG 58.454 40.000 0.00 0.00 0.00 2.85
228 229 6.371548 CACACTCGAATAAAATCCCAAGAAGA 59.628 38.462 0.00 0.00 0.00 2.87
229 230 6.371825 ACACTCGAATAAAATCCCAAGAAGAC 59.628 38.462 0.00 0.00 0.00 3.01
230 231 6.371548 CACTCGAATAAAATCCCAAGAAGACA 59.628 38.462 0.00 0.00 0.00 3.41
231 232 6.371825 ACTCGAATAAAATCCCAAGAAGACAC 59.628 38.462 0.00 0.00 0.00 3.67
232 233 5.646360 TCGAATAAAATCCCAAGAAGACACC 59.354 40.000 0.00 0.00 0.00 4.16
233 234 5.414454 CGAATAAAATCCCAAGAAGACACCA 59.586 40.000 0.00 0.00 0.00 4.17
234 235 6.403636 CGAATAAAATCCCAAGAAGACACCAG 60.404 42.308 0.00 0.00 0.00 4.00
235 236 2.887151 AATCCCAAGAAGACACCAGG 57.113 50.000 0.00 0.00 0.00 4.45
236 237 2.044793 ATCCCAAGAAGACACCAGGA 57.955 50.000 0.00 0.00 0.00 3.86
237 238 1.814429 TCCCAAGAAGACACCAGGAA 58.186 50.000 0.00 0.00 0.00 3.36
238 239 2.131854 TCCCAAGAAGACACCAGGAAA 58.868 47.619 0.00 0.00 0.00 3.13
239 240 2.512056 TCCCAAGAAGACACCAGGAAAA 59.488 45.455 0.00 0.00 0.00 2.29
240 241 2.623416 CCCAAGAAGACACCAGGAAAAC 59.377 50.000 0.00 0.00 0.00 2.43
241 242 3.287222 CCAAGAAGACACCAGGAAAACA 58.713 45.455 0.00 0.00 0.00 2.83
242 243 3.699038 CCAAGAAGACACCAGGAAAACAA 59.301 43.478 0.00 0.00 0.00 2.83
243 244 4.159506 CCAAGAAGACACCAGGAAAACAAA 59.840 41.667 0.00 0.00 0.00 2.83
244 245 4.983671 AGAAGACACCAGGAAAACAAAC 57.016 40.909 0.00 0.00 0.00 2.93
245 246 3.699538 AGAAGACACCAGGAAAACAAACC 59.300 43.478 0.00 0.00 0.00 3.27
278 279 6.494842 TGAAACTTGTCATCCGAAAAGAAAG 58.505 36.000 0.00 0.00 38.60 2.62
280 281 5.674933 ACTTGTCATCCGAAAAGAAAGTC 57.325 39.130 0.00 0.00 38.60 3.01
282 283 2.478894 TGTCATCCGAAAAGAAAGTCGC 59.521 45.455 0.00 0.00 35.93 5.19
295 296 1.538047 AAGTCGCCATGCTTGACAAT 58.462 45.000 0.22 0.14 35.09 2.71
349 350 2.440539 AGTTGTCATCCTCGTGTCAC 57.559 50.000 0.00 0.00 0.00 3.67
361 362 2.206750 TCGTGTCACTAAACTTGCCAC 58.793 47.619 0.65 0.00 0.00 5.01
367 368 5.288472 GTGTCACTAAACTTGCCACAAAAAG 59.712 40.000 0.00 0.00 0.00 2.27
368 369 4.803613 GTCACTAAACTTGCCACAAAAAGG 59.196 41.667 0.00 0.00 0.00 3.11
373 376 2.096248 ACTTGCCACAAAAAGGTTCGA 58.904 42.857 0.00 0.00 0.00 3.71
388 391 3.945285 AGGTTCGAAGTTGTCATGTGTTT 59.055 39.130 0.00 0.00 0.00 2.83
392 395 2.783284 CGAAGTTGTCATGTGTTTGTGC 59.217 45.455 0.00 0.00 0.00 4.57
415 418 2.288825 ACACGTGTGACACTTATCAGGG 60.289 50.000 22.71 0.29 31.34 4.45
645 2095 9.781425 ACAGATAAGGATATATGGATTCTCAGT 57.219 33.333 0.00 0.00 35.50 3.41
680 2130 1.482182 TGGCTACATCAGTACAGCCTG 59.518 52.381 17.65 0.00 45.68 4.85
684 2152 1.644509 ACATCAGTACAGCCTGGACA 58.355 50.000 10.29 0.00 32.29 4.02
717 2192 0.321122 GCAGGAGATAATGGGGCGAG 60.321 60.000 0.00 0.00 0.00 5.03
719 2194 0.838122 AGGAGATAATGGGGCGAGGG 60.838 60.000 0.00 0.00 0.00 4.30
720 2195 1.003233 GAGATAATGGGGCGAGGGC 60.003 63.158 0.00 0.00 38.90 5.19
722 2197 2.847234 ATAATGGGGCGAGGGCGA 60.847 61.111 0.00 0.00 41.24 5.54
738 2230 1.303309 GCGATGAGGATGTTCCCAAG 58.697 55.000 0.00 0.00 37.19 3.61
742 2234 3.739519 CGATGAGGATGTTCCCAAGTCTC 60.740 52.174 0.00 0.00 37.19 3.36
748 2241 1.276622 TGTTCCCAAGTCTCCCTAGC 58.723 55.000 0.00 0.00 0.00 3.42
750 2243 1.909986 GTTCCCAAGTCTCCCTAGCTT 59.090 52.381 0.00 0.00 0.00 3.74
752 2245 1.909302 TCCCAAGTCTCCCTAGCTTTG 59.091 52.381 0.00 0.00 0.00 2.77
754 2247 2.355209 CCCAAGTCTCCCTAGCTTTGTC 60.355 54.545 0.00 0.00 0.00 3.18
865 2381 9.158233 TGCATTAGTTAAGTGGAATAGTGTAAC 57.842 33.333 0.00 0.00 0.00 2.50
877 2393 9.744468 GTGGAATAGTGTAACACAAGAAAAATT 57.256 29.630 0.00 0.00 41.43 1.82
878 2394 9.959749 TGGAATAGTGTAACACAAGAAAAATTC 57.040 29.630 0.00 2.63 41.43 2.17
879 2395 9.959749 GGAATAGTGTAACACAAGAAAAATTCA 57.040 29.630 0.00 0.00 41.43 2.57
884 2400 9.921637 AGTGTAACACAAGAAAAATTCAAAGAA 57.078 25.926 0.00 0.00 41.43 2.52
903 2422 6.463483 AAGAAGAAACGACGGAGAAATAAC 57.537 37.500 0.00 0.00 0.00 1.89
910 2429 2.603560 CGACGGAGAAATAACAGCCTTC 59.396 50.000 0.00 0.00 0.00 3.46
957 2476 6.396829 AAACATTCCTCCTTGCTAATATGC 57.603 37.500 0.00 0.00 0.00 3.14
958 2477 4.401925 ACATTCCTCCTTGCTAATATGCC 58.598 43.478 0.00 0.00 0.00 4.40
959 2478 4.105377 ACATTCCTCCTTGCTAATATGCCT 59.895 41.667 0.00 0.00 0.00 4.75
960 2479 5.310594 ACATTCCTCCTTGCTAATATGCCTA 59.689 40.000 0.00 0.00 0.00 3.93
961 2480 5.904984 TTCCTCCTTGCTAATATGCCTAA 57.095 39.130 0.00 0.00 0.00 2.69
962 2481 6.454223 TTCCTCCTTGCTAATATGCCTAAT 57.546 37.500 0.00 0.00 0.00 1.73
988 2507 8.447924 TGCCTATATATAGATCGAACTACCAC 57.552 38.462 19.51 0.00 32.05 4.16
1040 2564 3.379372 CCATGGCTTCTTATGACCAACAG 59.621 47.826 0.00 0.00 35.41 3.16
1142 2666 4.070552 GAGCAAGACCGTCCCGCT 62.071 66.667 11.15 11.15 35.14 5.52
1292 2843 4.630894 ACTTCTTTGCGTTGTCATTTCA 57.369 36.364 0.00 0.00 0.00 2.69
1303 2854 6.128063 TGCGTTGTCATTTCATTCATGTGATA 60.128 34.615 0.00 0.00 0.00 2.15
1312 2870 8.965172 CATTTCATTCATGTGATAAAGCTTAGC 58.035 33.333 0.00 0.00 0.00 3.09
1329 2890 0.466372 AGCGGTCATCTCATCTCCGA 60.466 55.000 6.09 0.00 43.22 4.55
1330 2891 0.600557 GCGGTCATCTCATCTCCGAT 59.399 55.000 6.09 0.00 43.22 4.18
1331 2892 1.668337 GCGGTCATCTCATCTCCGATG 60.668 57.143 6.09 0.00 43.22 3.84
1332 2893 1.668337 CGGTCATCTCATCTCCGATGC 60.668 57.143 0.00 0.00 43.22 3.91
1333 2894 1.337635 GGTCATCTCATCTCCGATGCC 60.338 57.143 0.00 0.00 37.52 4.40
1344 2905 2.023181 CGATGCCGCCGATGTTTG 59.977 61.111 0.00 0.00 0.00 2.93
1463 3030 2.519377 ACTCAAACATTGTCGACGGA 57.481 45.000 11.62 2.13 0.00 4.69
1517 3089 6.721571 GACATGGTCGTAAAAGAGAATCAA 57.278 37.500 0.00 0.00 37.82 2.57
1646 3232 9.878737 TCTAGCTCTAGGTTTTTACCATATACT 57.121 33.333 0.00 0.00 34.06 2.12
1677 3269 2.026915 ACATGCACATGCTACTGGAGAA 60.027 45.455 10.50 0.00 42.39 2.87
1679 3271 2.635714 TGCACATGCTACTGGAGAATG 58.364 47.619 6.29 6.29 45.94 2.67
1687 3279 4.861196 TGCTACTGGAGAATGTAGACTCT 58.139 43.478 0.00 0.00 38.62 3.24
1688 3280 4.642437 TGCTACTGGAGAATGTAGACTCTG 59.358 45.833 0.00 0.00 38.62 3.35
1689 3281 4.499019 GCTACTGGAGAATGTAGACTCTGC 60.499 50.000 0.00 0.00 38.62 4.26
1690 3282 2.763448 ACTGGAGAATGTAGACTCTGCC 59.237 50.000 0.00 0.00 34.11 4.85
1698 3390 7.372260 AGAATGTAGACTCTGCCATATTTCT 57.628 36.000 0.00 0.00 0.00 2.52
1699 3391 7.800092 AGAATGTAGACTCTGCCATATTTCTT 58.200 34.615 0.00 0.00 0.00 2.52
1701 3393 9.547753 GAATGTAGACTCTGCCATATTTCTTTA 57.452 33.333 0.00 0.00 0.00 1.85
1720 3413 6.258354 TCTTTACAGAGGGGTACATCAGTAA 58.742 40.000 0.00 1.09 30.67 2.24
1744 3437 2.167693 CGGCAGTTGATGAGTAACCCTA 59.832 50.000 0.00 0.00 0.00 3.53
1745 3438 3.181465 CGGCAGTTGATGAGTAACCCTAT 60.181 47.826 0.00 0.00 0.00 2.57
1746 3439 4.038763 CGGCAGTTGATGAGTAACCCTATA 59.961 45.833 0.00 0.00 0.00 1.31
1747 3440 5.298347 GGCAGTTGATGAGTAACCCTATAC 58.702 45.833 0.00 0.00 0.00 1.47
1931 3627 8.492415 TCACCCAAGCTATATTCAACTACTAT 57.508 34.615 0.00 0.00 0.00 2.12
2043 4118 0.667993 CCAGCTTCAGAAAAACGGCA 59.332 50.000 0.00 0.00 0.00 5.69
2113 4188 8.804204 CGTAGGAGATATAATGGAGGTACTTTT 58.196 37.037 0.00 0.00 41.55 2.27
2162 4252 4.399004 TTGACCTTGTTTTGTGGATTGG 57.601 40.909 0.00 0.00 0.00 3.16
2308 4405 3.070159 TGCTGGTCTATACATTGGAGCTC 59.930 47.826 4.71 4.71 0.00 4.09
2472 4569 8.754230 ATCTGAATATGATTCTGATGTGTACG 57.246 34.615 16.29 0.00 36.29 3.67
2475 4572 6.642540 TGAATATGATTCTGATGTGTACGAGC 59.357 38.462 0.00 0.00 0.00 5.03
2476 4573 4.662468 ATGATTCTGATGTGTACGAGCT 57.338 40.909 0.00 0.00 0.00 4.09
2477 4574 4.456280 TGATTCTGATGTGTACGAGCTT 57.544 40.909 0.00 0.00 0.00 3.74
2481 4578 1.657594 CTGATGTGTACGAGCTTGCTG 59.342 52.381 0.00 0.00 0.00 4.41
2482 4579 1.272212 TGATGTGTACGAGCTTGCTGA 59.728 47.619 0.00 0.00 0.00 4.26
2483 4580 1.923204 GATGTGTACGAGCTTGCTGAG 59.077 52.381 0.00 0.00 0.00 3.35
2486 4583 2.492088 TGTGTACGAGCTTGCTGAGTAT 59.508 45.455 0.00 0.00 0.00 2.12
2487 4584 2.854777 GTGTACGAGCTTGCTGAGTATG 59.145 50.000 0.00 0.00 0.00 2.39
2488 4585 2.752903 TGTACGAGCTTGCTGAGTATGA 59.247 45.455 0.00 0.00 0.00 2.15
2489 4586 3.381590 TGTACGAGCTTGCTGAGTATGAT 59.618 43.478 0.00 0.00 0.00 2.45
2490 4587 3.090952 ACGAGCTTGCTGAGTATGATC 57.909 47.619 0.00 0.00 0.00 2.92
2491 4588 2.692557 ACGAGCTTGCTGAGTATGATCT 59.307 45.455 0.00 0.00 0.00 2.75
2579 4688 6.183360 CCAATTTTTGTGTGTGTACTCCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
2615 4724 0.388134 GCTTGTGTGGCTGCATGAAG 60.388 55.000 0.50 0.00 0.00 3.02
2678 4790 9.651913 GAATGCAAAGGATGGAATAAAACTTAA 57.348 29.630 0.00 0.00 30.96 1.85
2681 4793 9.434420 TGCAAAGGATGGAATAAAACTTAATTG 57.566 29.630 0.00 0.00 0.00 2.32
2682 4794 9.435688 GCAAAGGATGGAATAAAACTTAATTGT 57.564 29.630 0.00 0.00 0.00 2.71
2707 4819 7.087409 TGTATGCAACATGAGAATACAAAGG 57.913 36.000 16.34 0.00 32.33 3.11
2708 4820 6.883756 TGTATGCAACATGAGAATACAAAGGA 59.116 34.615 16.34 0.27 32.33 3.36
2709 4821 7.557358 TGTATGCAACATGAGAATACAAAGGAT 59.443 33.333 16.34 0.00 32.33 3.24
2710 4822 6.441093 TGCAACATGAGAATACAAAGGATC 57.559 37.500 0.00 0.00 0.00 3.36
2711 4823 5.065090 TGCAACATGAGAATACAAAGGATCG 59.935 40.000 0.00 0.00 0.00 3.69
2712 4824 5.504665 GCAACATGAGAATACAAAGGATCGG 60.505 44.000 0.00 0.00 0.00 4.18
2713 4825 5.614324 ACATGAGAATACAAAGGATCGGA 57.386 39.130 0.00 0.00 0.00 4.55
2714 4826 6.179906 ACATGAGAATACAAAGGATCGGAT 57.820 37.500 0.00 0.00 0.00 4.18
2715 4827 7.303182 ACATGAGAATACAAAGGATCGGATA 57.697 36.000 0.00 0.00 0.00 2.59
2716 4828 7.735917 ACATGAGAATACAAAGGATCGGATAA 58.264 34.615 0.00 0.00 0.00 1.75
2717 4829 8.210946 ACATGAGAATACAAAGGATCGGATAAA 58.789 33.333 0.00 0.00 0.00 1.40
2718 4830 9.056005 CATGAGAATACAAAGGATCGGATAAAA 57.944 33.333 0.00 0.00 0.00 1.52
2719 4831 8.433421 TGAGAATACAAAGGATCGGATAAAAC 57.567 34.615 0.00 0.00 0.00 2.43
2720 4832 8.265055 TGAGAATACAAAGGATCGGATAAAACT 58.735 33.333 0.00 0.00 0.00 2.66
2721 4833 9.110502 GAGAATACAAAGGATCGGATAAAACTT 57.889 33.333 0.00 0.00 0.00 2.66
2731 4843 7.614192 AGGATCGGATAAAACTTATTGGTTGTT 59.386 33.333 0.00 0.00 0.00 2.83
2763 4875 4.136796 CGGATGCAAAGGATGAAAGGATA 58.863 43.478 0.00 0.00 0.00 2.59
2774 4886 5.884792 AGGATGAAAGGATAGTTTCTTGCTG 59.115 40.000 5.75 0.00 39.34 4.41
2779 4891 6.599244 TGAAAGGATAGTTTCTTGCTGGTATG 59.401 38.462 0.00 0.00 37.34 2.39
2786 4898 6.054860 AGTTTCTTGCTGGTATGTATCACT 57.945 37.500 0.00 0.00 0.00 3.41
2792 4904 8.492673 TCTTGCTGGTATGTATCACTTTAAAG 57.507 34.615 13.76 13.76 0.00 1.85
2796 4908 9.109393 TGCTGGTATGTATCACTTTAAAGATTC 57.891 33.333 21.92 4.91 0.00 2.52
2813 4927 7.701539 AAAGATTCATAAGTACCATTGTGCA 57.298 32.000 0.00 0.00 0.00 4.57
2823 4937 6.343716 AGTACCATTGTGCATCATTTTCAA 57.656 33.333 0.00 0.00 0.00 2.69
2825 4939 4.571919 ACCATTGTGCATCATTTTCAAGG 58.428 39.130 0.00 0.00 0.00 3.61
2826 4940 3.936453 CCATTGTGCATCATTTTCAAGGG 59.064 43.478 0.00 0.00 34.58 3.95
2827 4941 3.681593 TTGTGCATCATTTTCAAGGGG 57.318 42.857 0.00 0.00 0.00 4.79
2828 4942 1.901159 TGTGCATCATTTTCAAGGGGG 59.099 47.619 0.00 0.00 0.00 5.40
2886 5003 9.502091 GGATTAGTAGTAATAATTCCATGTGCA 57.498 33.333 4.47 0.00 0.00 4.57
2899 5016 3.507233 TCCATGTGCATCTTTCCTGAAAC 59.493 43.478 0.00 0.00 0.00 2.78
2928 5045 5.527951 ACATCCACTACTATAGAGTGTGTCG 59.472 44.000 21.01 13.49 42.35 4.35
2945 5062 1.598601 GTCGTCACTAACCGGCAAAAA 59.401 47.619 0.00 0.00 0.00 1.94
2988 5105 1.813178 TGACCTGTCAGTAGCTTCTCG 59.187 52.381 0.00 0.00 34.14 4.04
2989 5106 1.813786 GACCTGTCAGTAGCTTCTCGT 59.186 52.381 0.00 0.00 0.00 4.18
2990 5107 2.229302 GACCTGTCAGTAGCTTCTCGTT 59.771 50.000 0.00 0.00 0.00 3.85
2991 5108 3.418995 ACCTGTCAGTAGCTTCTCGTTA 58.581 45.455 0.00 0.00 0.00 3.18
2999 5116 5.414765 TCAGTAGCTTCTCGTTAGTGATGAA 59.585 40.000 0.00 0.00 34.90 2.57
3010 5127 6.054941 TCGTTAGTGATGAATATGTTGGCAT 58.945 36.000 0.00 0.00 39.03 4.40
3018 5135 3.130869 TGAATATGTTGGCATTGACCAGC 59.869 43.478 0.00 6.91 41.82 4.85
3039 5156 1.867233 CACAACAAAGTCTCTCACCGG 59.133 52.381 0.00 0.00 0.00 5.28
3090 5250 5.692115 TGTTCAGGAACTCCTATATGCAA 57.308 39.130 12.86 0.00 46.65 4.08
3093 5253 4.037222 TCAGGAACTCCTATATGCAACCA 58.963 43.478 0.00 0.00 46.65 3.67
3101 5261 5.046735 ACTCCTATATGCAACCATAGCTCAG 60.047 44.000 0.00 0.00 37.36 3.35
3114 5274 1.811679 GCTCAGGCTTCGTGCTACC 60.812 63.158 0.00 0.00 42.39 3.18
3167 5386 9.546909 CAGAGTGATCATAATAACACACAAAAC 57.453 33.333 0.00 0.00 35.97 2.43
3168 5387 9.283768 AGAGTGATCATAATAACACACAAAACA 57.716 29.630 0.00 0.00 35.97 2.83
3169 5388 9.891828 GAGTGATCATAATAACACACAAAACAA 57.108 29.630 0.00 0.00 35.97 2.83
3170 5389 9.897744 AGTGATCATAATAACACACAAAACAAG 57.102 29.630 0.00 0.00 35.97 3.16
3231 5451 5.276161 CGTCATAAAAACAACACCAAAGCAC 60.276 40.000 0.00 0.00 0.00 4.40
3232 5452 5.578727 GTCATAAAAACAACACCAAAGCACA 59.421 36.000 0.00 0.00 0.00 4.57
3246 5466 4.273969 CCAAAGCACACGAAAGGTTAGTAA 59.726 41.667 0.00 0.00 0.00 2.24
3282 5502 3.496870 CCCAATACCATCTACAAGAGGCC 60.497 52.174 0.00 0.00 0.00 5.19
3310 5531 5.183904 GTCAAACCAAAGGCTTATCACATCT 59.816 40.000 0.00 0.00 0.00 2.90
3385 5606 0.947244 GGCTCCACATGGATAAAGCG 59.053 55.000 0.00 0.00 44.46 4.68
3442 5663 2.159142 GCAATCAGCTAAAGCAGGCAAT 60.159 45.455 4.54 0.00 45.16 3.56
3483 5705 5.669477 AGCTAAGTCTTGATCAGTCCAATC 58.331 41.667 0.00 0.00 0.00 2.67
3569 6215 9.838339 AAGATTTAAGTACATGACCATTCCTAG 57.162 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.903820 GCCTTATGTGGATCTAAAAATGTAAGT 58.096 33.333 0.00 0.00 0.00 2.24
39 40 8.070171 CGCCTTATGTGGATCTAAAAATGTAAG 58.930 37.037 0.00 0.00 0.00 2.34
40 41 7.771361 TCGCCTTATGTGGATCTAAAAATGTAA 59.229 33.333 0.00 0.00 0.00 2.41
41 42 7.225931 GTCGCCTTATGTGGATCTAAAAATGTA 59.774 37.037 0.00 0.00 0.00 2.29
42 43 6.038271 GTCGCCTTATGTGGATCTAAAAATGT 59.962 38.462 0.00 0.00 0.00 2.71
43 44 6.430451 GTCGCCTTATGTGGATCTAAAAATG 58.570 40.000 0.00 0.00 0.00 2.32
44 45 5.531287 GGTCGCCTTATGTGGATCTAAAAAT 59.469 40.000 0.00 0.00 0.00 1.82
45 46 4.879545 GGTCGCCTTATGTGGATCTAAAAA 59.120 41.667 0.00 0.00 0.00 1.94
46 47 4.163458 AGGTCGCCTTATGTGGATCTAAAA 59.837 41.667 0.00 0.00 0.00 1.52
47 48 3.709653 AGGTCGCCTTATGTGGATCTAAA 59.290 43.478 0.00 0.00 0.00 1.85
48 49 3.069586 CAGGTCGCCTTATGTGGATCTAA 59.930 47.826 0.00 0.00 0.00 2.10
49 50 2.628178 CAGGTCGCCTTATGTGGATCTA 59.372 50.000 0.00 0.00 0.00 1.98
50 51 1.414181 CAGGTCGCCTTATGTGGATCT 59.586 52.381 0.00 0.00 0.00 2.75
51 52 1.139058 ACAGGTCGCCTTATGTGGATC 59.861 52.381 0.00 0.00 0.00 3.36
52 53 1.139058 GACAGGTCGCCTTATGTGGAT 59.861 52.381 0.00 0.00 0.00 3.41
53 54 0.535335 GACAGGTCGCCTTATGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
54 55 0.249120 TGACAGGTCGCCTTATGTGG 59.751 55.000 0.00 0.00 0.00 4.17
55 56 1.732259 GTTGACAGGTCGCCTTATGTG 59.268 52.381 0.00 0.00 0.00 3.21
56 57 1.346395 TGTTGACAGGTCGCCTTATGT 59.654 47.619 0.00 0.00 0.00 2.29
57 58 2.002586 CTGTTGACAGGTCGCCTTATG 58.997 52.381 3.19 0.00 40.20 1.90
58 59 2.038557 AACTGTTGACAGGTCGCCTTAT 59.961 45.455 15.01 0.00 40.49 1.73
59 60 1.414919 AACTGTTGACAGGTCGCCTTA 59.585 47.619 15.01 0.00 40.49 2.69
60 61 0.180406 AACTGTTGACAGGTCGCCTT 59.820 50.000 15.01 0.00 40.49 4.35
61 62 0.180406 AAACTGTTGACAGGTCGCCT 59.820 50.000 15.01 0.00 44.43 5.52
62 63 0.586802 GAAACTGTTGACAGGTCGCC 59.413 55.000 15.01 0.00 44.43 5.54
63 64 1.583054 AGAAACTGTTGACAGGTCGC 58.417 50.000 15.01 5.24 44.43 5.19
64 65 3.302480 CGAAAGAAACTGTTGACAGGTCG 60.302 47.826 15.01 4.73 44.43 4.79
65 66 3.546218 GCGAAAGAAACTGTTGACAGGTC 60.546 47.826 15.01 11.29 44.43 3.85
68 69 9.054969 TTTCCTAGCGAAAGAAACTGTTGACAG 62.055 40.741 9.50 9.50 41.32 3.51
69 70 3.807622 CCTAGCGAAAGAAACTGTTGACA 59.192 43.478 0.00 0.00 0.00 3.58
70 71 4.056050 TCCTAGCGAAAGAAACTGTTGAC 58.944 43.478 0.00 0.00 0.00 3.18
71 72 4.330944 TCCTAGCGAAAGAAACTGTTGA 57.669 40.909 0.00 0.00 0.00 3.18
72 73 5.418310 TTTCCTAGCGAAAGAAACTGTTG 57.582 39.130 0.00 0.00 35.49 3.33
82 83 2.009774 GCTGCATCTTTCCTAGCGAAA 58.990 47.619 0.00 6.32 38.16 3.46
83 84 1.066215 TGCTGCATCTTTCCTAGCGAA 60.066 47.619 0.00 0.00 37.20 4.70
84 85 0.536724 TGCTGCATCTTTCCTAGCGA 59.463 50.000 0.00 0.00 37.20 4.93
85 86 1.372582 TTGCTGCATCTTTCCTAGCG 58.627 50.000 1.84 0.00 37.20 4.26
86 87 2.098770 CCTTTGCTGCATCTTTCCTAGC 59.901 50.000 1.84 0.00 35.06 3.42
87 88 3.614092 TCCTTTGCTGCATCTTTCCTAG 58.386 45.455 1.84 0.00 0.00 3.02
88 89 3.614092 CTCCTTTGCTGCATCTTTCCTA 58.386 45.455 1.84 0.00 0.00 2.94
89 90 2.444421 CTCCTTTGCTGCATCTTTCCT 58.556 47.619 1.84 0.00 0.00 3.36
90 91 1.135170 GCTCCTTTGCTGCATCTTTCC 60.135 52.381 1.84 0.00 0.00 3.13
91 92 1.542915 TGCTCCTTTGCTGCATCTTTC 59.457 47.619 1.84 0.00 0.00 2.62
92 93 1.544691 CTGCTCCTTTGCTGCATCTTT 59.455 47.619 1.84 0.00 36.07 2.52
93 94 1.174783 CTGCTCCTTTGCTGCATCTT 58.825 50.000 1.84 0.00 36.07 2.40
94 95 2.869636 CTGCTCCTTTGCTGCATCT 58.130 52.632 1.84 0.00 36.07 2.90
99 100 1.177256 AACTGGCTGCTCCTTTGCTG 61.177 55.000 0.00 0.00 35.26 4.41
100 101 0.468771 AAACTGGCTGCTCCTTTGCT 60.469 50.000 0.00 0.00 35.26 3.91
101 102 0.038801 GAAACTGGCTGCTCCTTTGC 60.039 55.000 0.00 0.00 35.26 3.68
102 103 0.600057 GGAAACTGGCTGCTCCTTTG 59.400 55.000 0.00 0.00 35.26 2.77
103 104 0.185901 TGGAAACTGGCTGCTCCTTT 59.814 50.000 12.38 0.00 35.26 3.11
104 105 0.185901 TTGGAAACTGGCTGCTCCTT 59.814 50.000 12.38 0.00 35.26 3.36
105 106 0.251077 CTTGGAAACTGGCTGCTCCT 60.251 55.000 12.38 0.00 35.26 3.69
106 107 0.250901 TCTTGGAAACTGGCTGCTCC 60.251 55.000 0.00 0.00 0.00 4.70
107 108 1.831580 ATCTTGGAAACTGGCTGCTC 58.168 50.000 0.00 0.00 0.00 4.26
108 109 3.439857 TTATCTTGGAAACTGGCTGCT 57.560 42.857 0.00 0.00 0.00 4.24
109 110 4.427312 CAATTATCTTGGAAACTGGCTGC 58.573 43.478 0.00 0.00 0.00 5.25
110 111 4.463891 ACCAATTATCTTGGAAACTGGCTG 59.536 41.667 10.81 0.00 42.06 4.85
111 112 4.677182 ACCAATTATCTTGGAAACTGGCT 58.323 39.130 10.81 0.00 42.06 4.75
112 113 5.405935 AACCAATTATCTTGGAAACTGGC 57.594 39.130 10.81 0.00 42.06 4.85
113 114 6.646240 CACAAACCAATTATCTTGGAAACTGG 59.354 38.462 10.81 0.00 42.06 4.00
114 115 7.432869 TCACAAACCAATTATCTTGGAAACTG 58.567 34.615 10.81 4.94 42.06 3.16
115 116 7.595819 TCACAAACCAATTATCTTGGAAACT 57.404 32.000 10.81 0.00 42.06 2.66
116 117 8.141268 TCTTCACAAACCAATTATCTTGGAAAC 58.859 33.333 10.81 0.00 42.06 2.78
117 118 8.243961 TCTTCACAAACCAATTATCTTGGAAA 57.756 30.769 10.81 0.00 42.06 3.13
118 119 7.723616 TCTCTTCACAAACCAATTATCTTGGAA 59.276 33.333 10.81 0.00 42.06 3.53
119 120 7.230747 TCTCTTCACAAACCAATTATCTTGGA 58.769 34.615 10.81 0.00 42.06 3.53
120 121 7.452880 TCTCTTCACAAACCAATTATCTTGG 57.547 36.000 2.50 2.50 44.91 3.61
121 122 9.918630 ATTTCTCTTCACAAACCAATTATCTTG 57.081 29.630 0.00 0.00 0.00 3.02
124 125 9.788960 GGTATTTCTCTTCACAAACCAATTATC 57.211 33.333 0.00 0.00 0.00 1.75
125 126 9.308000 TGGTATTTCTCTTCACAAACCAATTAT 57.692 29.630 0.00 0.00 33.03 1.28
126 127 8.698973 TGGTATTTCTCTTCACAAACCAATTA 57.301 30.769 0.00 0.00 33.03 1.40
127 128 7.595819 TGGTATTTCTCTTCACAAACCAATT 57.404 32.000 0.00 0.00 33.03 2.32
128 129 7.595819 TTGGTATTTCTCTTCACAAACCAAT 57.404 32.000 0.00 0.00 39.99 3.16
129 130 7.069331 ACATTGGTATTTCTCTTCACAAACCAA 59.931 33.333 6.10 6.10 46.46 3.67
130 131 6.549364 ACATTGGTATTTCTCTTCACAAACCA 59.451 34.615 0.00 0.00 34.09 3.67
131 132 6.981722 ACATTGGTATTTCTCTTCACAAACC 58.018 36.000 0.00 0.00 0.00 3.27
132 133 8.564574 TGTACATTGGTATTTCTCTTCACAAAC 58.435 33.333 0.00 0.00 0.00 2.93
133 134 8.684386 TGTACATTGGTATTTCTCTTCACAAA 57.316 30.769 0.00 0.00 0.00 2.83
134 135 7.094805 GCTGTACATTGGTATTTCTCTTCACAA 60.095 37.037 0.00 0.00 0.00 3.33
135 136 6.371548 GCTGTACATTGGTATTTCTCTTCACA 59.628 38.462 0.00 0.00 0.00 3.58
136 137 6.183360 GGCTGTACATTGGTATTTCTCTTCAC 60.183 42.308 0.00 0.00 0.00 3.18
137 138 5.880332 GGCTGTACATTGGTATTTCTCTTCA 59.120 40.000 0.00 0.00 0.00 3.02
138 139 5.297029 GGGCTGTACATTGGTATTTCTCTTC 59.703 44.000 0.00 0.00 0.00 2.87
139 140 5.193679 GGGCTGTACATTGGTATTTCTCTT 58.806 41.667 0.00 0.00 0.00 2.85
140 141 4.227300 TGGGCTGTACATTGGTATTTCTCT 59.773 41.667 0.00 0.00 0.00 3.10
141 142 4.523083 TGGGCTGTACATTGGTATTTCTC 58.477 43.478 0.00 0.00 0.00 2.87
142 143 4.526970 CTGGGCTGTACATTGGTATTTCT 58.473 43.478 0.00 0.00 0.00 2.52
143 144 3.066760 GCTGGGCTGTACATTGGTATTTC 59.933 47.826 0.00 0.00 0.00 2.17
144 145 3.023832 GCTGGGCTGTACATTGGTATTT 58.976 45.455 0.00 0.00 0.00 1.40
145 146 2.654863 GCTGGGCTGTACATTGGTATT 58.345 47.619 0.00 0.00 0.00 1.89
146 147 1.475034 CGCTGGGCTGTACATTGGTAT 60.475 52.381 0.00 0.00 0.00 2.73
147 148 0.107897 CGCTGGGCTGTACATTGGTA 60.108 55.000 0.00 0.00 0.00 3.25
148 149 1.377202 CGCTGGGCTGTACATTGGT 60.377 57.895 0.00 0.00 0.00 3.67
149 150 1.078497 TCGCTGGGCTGTACATTGG 60.078 57.895 0.00 0.00 0.00 3.16
150 151 1.091771 CCTCGCTGGGCTGTACATTG 61.092 60.000 0.00 0.00 0.00 2.82
151 152 1.221840 CCTCGCTGGGCTGTACATT 59.778 57.895 0.00 0.00 0.00 2.71
152 153 2.903357 CCTCGCTGGGCTGTACAT 59.097 61.111 0.00 0.00 0.00 2.29
165 166 2.430244 AACTACGTGCGTGCCTCG 60.430 61.111 7.55 5.31 43.12 4.63
166 167 2.092882 GGAACTACGTGCGTGCCTC 61.093 63.158 7.55 1.10 0.00 4.70
167 168 2.048503 GGAACTACGTGCGTGCCT 60.049 61.111 7.55 0.00 0.00 4.75
168 169 3.475774 CGGAACTACGTGCGTGCC 61.476 66.667 7.55 2.15 0.00 5.01
169 170 4.130281 GCGGAACTACGTGCGTGC 62.130 66.667 7.55 0.00 34.45 5.34
170 171 3.475774 GGCGGAACTACGTGCGTG 61.476 66.667 7.55 0.62 34.45 5.34
171 172 3.621892 GAGGCGGAACTACGTGCGT 62.622 63.158 0.00 2.05 34.45 5.24
172 173 2.879462 GAGGCGGAACTACGTGCG 60.879 66.667 0.00 0.00 35.98 5.34
173 174 2.508663 GGAGGCGGAACTACGTGC 60.509 66.667 0.00 0.00 35.98 5.34
174 175 1.139095 GAGGAGGCGGAACTACGTG 59.861 63.158 0.00 0.00 35.98 4.49
175 176 2.050934 GGAGGAGGCGGAACTACGT 61.051 63.158 0.00 0.00 35.98 3.57
176 177 2.806237 GGAGGAGGCGGAACTACG 59.194 66.667 0.00 0.00 0.00 3.51
177 178 2.806237 CGGAGGAGGCGGAACTAC 59.194 66.667 0.00 0.00 0.00 2.73
178 179 3.145551 GCGGAGGAGGCGGAACTA 61.146 66.667 0.00 0.00 0.00 2.24
180 181 4.516195 GAGCGGAGGAGGCGGAAC 62.516 72.222 0.00 0.00 35.00 3.62
195 196 0.738975 TATTCGAGTGTGCTCCGGAG 59.261 55.000 27.83 27.83 38.49 4.63
196 197 1.179152 TTATTCGAGTGTGCTCCGGA 58.821 50.000 2.93 2.93 38.49 5.14
197 198 2.004583 TTTATTCGAGTGTGCTCCGG 57.995 50.000 0.00 0.00 38.49 5.14
198 199 3.001330 GGATTTTATTCGAGTGTGCTCCG 59.999 47.826 0.00 0.00 38.49 4.63
199 200 3.312697 GGGATTTTATTCGAGTGTGCTCC 59.687 47.826 0.00 0.00 38.49 4.70
200 201 3.938963 TGGGATTTTATTCGAGTGTGCTC 59.061 43.478 0.00 0.00 38.35 4.26
201 202 3.950397 TGGGATTTTATTCGAGTGTGCT 58.050 40.909 0.00 0.00 0.00 4.40
202 203 4.394920 TCTTGGGATTTTATTCGAGTGTGC 59.605 41.667 0.00 0.00 0.00 4.57
203 204 6.371548 TCTTCTTGGGATTTTATTCGAGTGTG 59.628 38.462 0.00 0.00 0.00 3.82
204 205 6.371825 GTCTTCTTGGGATTTTATTCGAGTGT 59.628 38.462 0.00 0.00 0.00 3.55
205 206 6.371548 TGTCTTCTTGGGATTTTATTCGAGTG 59.628 38.462 0.00 0.00 0.00 3.51
206 207 6.371825 GTGTCTTCTTGGGATTTTATTCGAGT 59.628 38.462 0.00 0.00 0.00 4.18
207 208 6.183360 GGTGTCTTCTTGGGATTTTATTCGAG 60.183 42.308 0.00 0.00 0.00 4.04
208 209 5.646360 GGTGTCTTCTTGGGATTTTATTCGA 59.354 40.000 0.00 0.00 0.00 3.71
209 210 5.414454 TGGTGTCTTCTTGGGATTTTATTCG 59.586 40.000 0.00 0.00 0.00 3.34
210 211 6.127619 CCTGGTGTCTTCTTGGGATTTTATTC 60.128 42.308 0.00 0.00 0.00 1.75
211 212 5.716703 CCTGGTGTCTTCTTGGGATTTTATT 59.283 40.000 0.00 0.00 0.00 1.40
212 213 5.015178 TCCTGGTGTCTTCTTGGGATTTTAT 59.985 40.000 0.00 0.00 0.00 1.40
213 214 4.352595 TCCTGGTGTCTTCTTGGGATTTTA 59.647 41.667 0.00 0.00 0.00 1.52
214 215 3.140144 TCCTGGTGTCTTCTTGGGATTTT 59.860 43.478 0.00 0.00 0.00 1.82
215 216 2.716424 TCCTGGTGTCTTCTTGGGATTT 59.284 45.455 0.00 0.00 0.00 2.17
216 217 2.348472 TCCTGGTGTCTTCTTGGGATT 58.652 47.619 0.00 0.00 0.00 3.01
217 218 2.044793 TCCTGGTGTCTTCTTGGGAT 57.955 50.000 0.00 0.00 0.00 3.85
218 219 1.814429 TTCCTGGTGTCTTCTTGGGA 58.186 50.000 0.00 0.00 0.00 4.37
219 220 2.623416 GTTTTCCTGGTGTCTTCTTGGG 59.377 50.000 0.00 0.00 0.00 4.12
220 221 3.287222 TGTTTTCCTGGTGTCTTCTTGG 58.713 45.455 0.00 0.00 0.00 3.61
221 222 4.981806 TTGTTTTCCTGGTGTCTTCTTG 57.018 40.909 0.00 0.00 0.00 3.02
222 223 4.159693 GGTTTGTTTTCCTGGTGTCTTCTT 59.840 41.667 0.00 0.00 0.00 2.52
223 224 3.699538 GGTTTGTTTTCCTGGTGTCTTCT 59.300 43.478 0.00 0.00 0.00 2.85
224 225 3.445805 TGGTTTGTTTTCCTGGTGTCTTC 59.554 43.478 0.00 0.00 0.00 2.87
225 226 3.436243 TGGTTTGTTTTCCTGGTGTCTT 58.564 40.909 0.00 0.00 0.00 3.01
226 227 3.094484 TGGTTTGTTTTCCTGGTGTCT 57.906 42.857 0.00 0.00 0.00 3.41
227 228 3.878160 TTGGTTTGTTTTCCTGGTGTC 57.122 42.857 0.00 0.00 0.00 3.67
228 229 4.625607 TTTTGGTTTGTTTTCCTGGTGT 57.374 36.364 0.00 0.00 0.00 4.16
260 261 3.059188 GCGACTTTCTTTTCGGATGACAA 60.059 43.478 0.00 0.00 35.73 3.18
278 279 3.485947 TTAATTGTCAAGCATGGCGAC 57.514 42.857 0.00 0.00 32.34 5.19
280 281 3.836949 ACTTTAATTGTCAAGCATGGCG 58.163 40.909 0.00 0.00 32.34 5.69
295 296 4.312443 GGACGTGAGGATGACAACTTTAA 58.688 43.478 0.00 0.00 0.00 1.52
327 328 4.220821 AGTGACACGAGGATGACAACTATT 59.779 41.667 0.00 0.00 0.00 1.73
329 330 3.154710 AGTGACACGAGGATGACAACTA 58.845 45.455 0.00 0.00 0.00 2.24
334 335 4.175787 AGTTTAGTGACACGAGGATGAC 57.824 45.455 0.00 0.00 0.00 3.06
344 345 5.392767 TTTTTGTGGCAAGTTTAGTGACA 57.607 34.783 0.00 0.00 0.00 3.58
345 346 4.803613 CCTTTTTGTGGCAAGTTTAGTGAC 59.196 41.667 0.00 0.00 0.00 3.67
349 350 4.502645 CGAACCTTTTTGTGGCAAGTTTAG 59.497 41.667 0.00 0.00 0.00 1.85
361 362 5.229887 CACATGACAACTTCGAACCTTTTTG 59.770 40.000 0.00 0.00 0.00 2.44
367 368 3.963383 AACACATGACAACTTCGAACC 57.037 42.857 0.00 0.00 0.00 3.62
368 369 4.495472 CACAAACACATGACAACTTCGAAC 59.505 41.667 0.00 0.00 0.00 3.95
373 376 2.495270 TGGCACAAACACATGACAACTT 59.505 40.909 0.00 0.00 28.30 2.66
392 395 2.731451 CTGATAAGTGTCACACGTGTGG 59.269 50.000 39.88 25.18 45.65 4.17
635 2085 5.573669 GTCGTTAGTGAGAAACTGAGAATCC 59.426 44.000 0.00 0.00 40.26 3.01
636 2086 6.306837 CAGTCGTTAGTGAGAAACTGAGAATC 59.693 42.308 0.00 0.00 40.26 2.52
637 2087 6.153067 CAGTCGTTAGTGAGAAACTGAGAAT 58.847 40.000 0.00 0.00 40.26 2.40
638 2088 5.507482 CCAGTCGTTAGTGAGAAACTGAGAA 60.507 44.000 0.00 0.00 40.26 2.87
639 2089 4.023107 CCAGTCGTTAGTGAGAAACTGAGA 60.023 45.833 0.00 0.00 40.26 3.27
640 2090 4.230657 CCAGTCGTTAGTGAGAAACTGAG 58.769 47.826 0.00 0.00 40.26 3.35
641 2091 3.552273 GCCAGTCGTTAGTGAGAAACTGA 60.552 47.826 0.00 0.00 40.26 3.41
642 2092 2.731976 GCCAGTCGTTAGTGAGAAACTG 59.268 50.000 0.00 0.00 40.26 3.16
643 2093 2.628657 AGCCAGTCGTTAGTGAGAAACT 59.371 45.455 0.00 0.00 43.40 2.66
644 2094 3.027974 AGCCAGTCGTTAGTGAGAAAC 57.972 47.619 0.00 0.00 0.00 2.78
645 2095 3.570975 TGTAGCCAGTCGTTAGTGAGAAA 59.429 43.478 0.00 0.00 0.00 2.52
680 2130 2.280797 TTCACACGCAGCCTGTCC 60.281 61.111 0.00 0.00 0.00 4.02
684 2152 2.667536 CTGCTTCACACGCAGCCT 60.668 61.111 0.00 0.00 46.98 4.58
700 2168 0.838122 CCCTCGCCCCATTATCTCCT 60.838 60.000 0.00 0.00 0.00 3.69
717 2192 1.227973 GGGAACATCCTCATCGCCC 60.228 63.158 0.00 0.00 36.57 6.13
719 2194 1.303309 CTTGGGAACATCCTCATCGC 58.697 55.000 0.00 0.00 42.32 4.58
720 2195 2.169352 AGACTTGGGAACATCCTCATCG 59.831 50.000 0.00 0.00 42.32 3.84
722 2197 2.507471 GGAGACTTGGGAACATCCTCAT 59.493 50.000 0.00 0.00 42.32 2.90
738 2230 1.276421 TGCAGACAAAGCTAGGGAGAC 59.724 52.381 0.00 0.00 0.00 3.36
742 2234 1.065199 TCCATGCAGACAAAGCTAGGG 60.065 52.381 0.00 0.00 0.00 3.53
748 2241 3.551454 CCAAACAGTCCATGCAGACAAAG 60.551 47.826 8.62 1.46 39.34 2.77
750 2243 1.955778 CCAAACAGTCCATGCAGACAA 59.044 47.619 8.62 0.00 39.34 3.18
752 2245 0.883833 CCCAAACAGTCCATGCAGAC 59.116 55.000 0.00 0.00 37.01 3.51
754 2247 0.251297 TCCCCAAACAGTCCATGCAG 60.251 55.000 0.00 0.00 0.00 4.41
865 2381 8.859156 TCGTTTCTTCTTTGAATTTTTCTTGTG 58.141 29.630 0.00 0.00 0.00 3.33
877 2393 3.720949 TCTCCGTCGTTTCTTCTTTGA 57.279 42.857 0.00 0.00 0.00 2.69
878 2394 4.789095 TTTCTCCGTCGTTTCTTCTTTG 57.211 40.909 0.00 0.00 0.00 2.77
879 2395 6.480981 TGTTATTTCTCCGTCGTTTCTTCTTT 59.519 34.615 0.00 0.00 0.00 2.52
880 2396 5.987347 TGTTATTTCTCCGTCGTTTCTTCTT 59.013 36.000 0.00 0.00 0.00 2.52
881 2397 5.535333 TGTTATTTCTCCGTCGTTTCTTCT 58.465 37.500 0.00 0.00 0.00 2.85
882 2398 5.668132 GCTGTTATTTCTCCGTCGTTTCTTC 60.668 44.000 0.00 0.00 0.00 2.87
883 2399 4.151867 GCTGTTATTTCTCCGTCGTTTCTT 59.848 41.667 0.00 0.00 0.00 2.52
884 2400 3.678548 GCTGTTATTTCTCCGTCGTTTCT 59.321 43.478 0.00 0.00 0.00 2.52
885 2401 3.181523 GGCTGTTATTTCTCCGTCGTTTC 60.182 47.826 0.00 0.00 0.00 2.78
886 2402 2.740447 GGCTGTTATTTCTCCGTCGTTT 59.260 45.455 0.00 0.00 0.00 3.60
887 2403 2.028385 AGGCTGTTATTTCTCCGTCGTT 60.028 45.455 0.00 0.00 0.00 3.85
888 2404 1.549170 AGGCTGTTATTTCTCCGTCGT 59.451 47.619 0.00 0.00 0.00 4.34
903 2422 2.623915 GCACTGTGCAGGAAGGCTG 61.624 63.158 26.70 0.00 44.26 4.85
956 2475 9.413048 GTTCGATCTATATATAGGCAATTAGGC 57.587 37.037 17.81 0.00 44.61 3.93
961 2480 9.642343 TGGTAGTTCGATCTATATATAGGCAAT 57.358 33.333 17.81 6.11 0.00 3.56
962 2481 8.900781 GTGGTAGTTCGATCTATATATAGGCAA 58.099 37.037 17.81 1.57 0.00 4.52
988 2507 2.951642 TGTTGGTTTTGAGCTTCCTCTG 59.048 45.455 0.00 0.00 38.93 3.35
1040 2564 2.561858 AGGTACCTCGAGAACCTTGAAC 59.438 50.000 25.37 8.52 40.82 3.18
1214 2750 2.383527 CCGCAGCTTGTCGAACTCC 61.384 63.158 0.00 0.00 0.00 3.85
1292 2843 5.126067 ACCGCTAAGCTTTATCACATGAAT 58.874 37.500 3.20 0.00 0.00 2.57
1303 2854 3.133721 AGATGAGATGACCGCTAAGCTTT 59.866 43.478 3.20 0.00 0.00 3.51
1312 2870 1.668337 GCATCGGAGATGAGATGACCG 60.668 57.143 13.56 0.00 45.08 4.79
1329 2890 2.406616 GGACAAACATCGGCGGCAT 61.407 57.895 10.53 0.00 0.00 4.40
1330 2891 3.053291 GGACAAACATCGGCGGCA 61.053 61.111 10.53 0.00 0.00 5.69
1331 2892 3.039202 CTGGACAAACATCGGCGGC 62.039 63.158 7.21 0.00 0.00 6.53
1332 2893 2.398554 CCTGGACAAACATCGGCGG 61.399 63.158 7.21 0.00 0.00 6.13
1333 2894 3.039202 GCCTGGACAAACATCGGCG 62.039 63.158 0.00 0.00 0.00 6.46
1463 3030 0.183014 CATCCATGCCCAGCTTCTCT 59.817 55.000 0.00 0.00 0.00 3.10
1517 3089 0.680061 GGTCGTTCCAGTCAAGGACT 59.320 55.000 6.12 0.00 44.44 3.85
1651 3237 1.559219 AGTAGCATGTGCATGTACCCA 59.441 47.619 11.66 0.00 45.16 4.51
1652 3238 1.942657 CAGTAGCATGTGCATGTACCC 59.057 52.381 11.66 0.21 45.16 3.69
1669 3261 2.763448 GGCAGAGTCTACATTCTCCAGT 59.237 50.000 0.00 0.00 0.00 4.00
1677 3269 8.486210 TGTAAAGAAATATGGCAGAGTCTACAT 58.514 33.333 12.53 12.53 0.00 2.29
1679 3271 8.198109 TCTGTAAAGAAATATGGCAGAGTCTAC 58.802 37.037 0.00 0.00 0.00 2.59
1681 3273 7.187824 TCTGTAAAGAAATATGGCAGAGTCT 57.812 36.000 0.00 0.00 0.00 3.24
1682 3274 6.481644 CCTCTGTAAAGAAATATGGCAGAGTC 59.518 42.308 14.80 0.00 43.86 3.36
1687 3279 4.229582 ACCCCTCTGTAAAGAAATATGGCA 59.770 41.667 0.00 0.00 0.00 4.92
1688 3280 4.793201 ACCCCTCTGTAAAGAAATATGGC 58.207 43.478 0.00 0.00 0.00 4.40
1689 3281 6.895782 TGTACCCCTCTGTAAAGAAATATGG 58.104 40.000 0.00 0.00 0.00 2.74
1690 3282 8.210946 TGATGTACCCCTCTGTAAAGAAATATG 58.789 37.037 0.00 0.00 0.00 1.78
1698 3390 6.099269 GGATTACTGATGTACCCCTCTGTAAA 59.901 42.308 16.33 7.19 38.46 2.01
1699 3391 5.601313 GGATTACTGATGTACCCCTCTGTAA 59.399 44.000 15.45 15.45 38.95 2.41
1701 3393 3.967987 GGATTACTGATGTACCCCTCTGT 59.032 47.826 0.00 0.00 0.00 3.41
1720 3413 2.420129 GGTTACTCATCAACTGCCGGAT 60.420 50.000 5.05 0.00 0.00 4.18
1746 3439 9.407380 TGGATGCTAATTAAGACAATTGTATGT 57.593 29.630 11.95 2.22 35.90 2.29
1766 3459 3.628942 TGTCTCTGCACAATTATGGATGC 59.371 43.478 0.00 0.00 38.59 3.91
1931 3627 2.583441 CGGCCTTGGACACTGAGGA 61.583 63.158 0.00 0.00 32.11 3.71
2043 4118 0.618458 ATGGGCACGTTGTACCAGAT 59.382 50.000 0.00 0.00 36.27 2.90
2121 4208 8.046708 AGGTCAAACAATTATACATGTAGCTGA 58.953 33.333 11.91 1.91 0.00 4.26
2162 4252 8.522830 AGAGAGAAGTATTATATCTCAGCTTGC 58.477 37.037 5.86 0.00 31.39 4.01
2472 4569 5.170021 CCATAGATCATACTCAGCAAGCTC 58.830 45.833 0.00 0.00 0.00 4.09
2475 4572 6.094193 TCACCATAGATCATACTCAGCAAG 57.906 41.667 0.00 0.00 0.00 4.01
2476 4573 6.098838 ACTTCACCATAGATCATACTCAGCAA 59.901 38.462 0.00 0.00 0.00 3.91
2477 4574 5.600069 ACTTCACCATAGATCATACTCAGCA 59.400 40.000 0.00 0.00 0.00 4.41
2482 4579 9.030452 GGAAGATACTTCACCATAGATCATACT 57.970 37.037 12.46 0.00 0.00 2.12
2483 4580 7.971168 CGGAAGATACTTCACCATAGATCATAC 59.029 40.741 12.46 0.00 0.00 2.39
2486 4583 5.833667 ACGGAAGATACTTCACCATAGATCA 59.166 40.000 12.46 0.00 0.00 2.92
2487 4584 6.334102 ACGGAAGATACTTCACCATAGATC 57.666 41.667 12.46 0.00 0.00 2.75
2488 4585 5.048643 CGACGGAAGATACTTCACCATAGAT 60.049 44.000 12.46 0.00 0.00 1.98
2489 4586 4.275196 CGACGGAAGATACTTCACCATAGA 59.725 45.833 12.46 0.00 0.00 1.98
2490 4587 4.275196 TCGACGGAAGATACTTCACCATAG 59.725 45.833 12.46 1.13 0.00 2.23
2491 4588 4.036027 GTCGACGGAAGATACTTCACCATA 59.964 45.833 0.00 0.00 0.00 2.74
2542 4648 5.371176 ACACAAAAATTGGGGAAAAGGGTAT 59.629 36.000 0.00 0.00 38.76 2.73
2579 4688 3.067461 ACAAGCTGCCGAACATTTTACAA 59.933 39.130 0.00 0.00 0.00 2.41
2615 4724 8.537223 CACAGCAGATACATTTTATTTCAATGC 58.463 33.333 0.00 0.00 35.36 3.56
2620 4732 7.441878 GCACACAGCAGATACATTTTATTTC 57.558 36.000 0.00 0.00 44.79 2.17
2682 4794 7.392953 TCCTTTGTATTCTCATGTTGCATACAA 59.607 33.333 15.82 15.82 40.89 2.41
2683 4795 6.883756 TCCTTTGTATTCTCATGTTGCATACA 59.116 34.615 8.72 8.72 41.97 2.29
2684 4796 7.320443 TCCTTTGTATTCTCATGTTGCATAC 57.680 36.000 0.00 0.00 0.00 2.39
2685 4797 7.041848 CGATCCTTTGTATTCTCATGTTGCATA 60.042 37.037 0.00 0.00 0.00 3.14
2686 4798 6.238566 CGATCCTTTGTATTCTCATGTTGCAT 60.239 38.462 0.00 0.00 0.00 3.96
2687 4799 5.065090 CGATCCTTTGTATTCTCATGTTGCA 59.935 40.000 0.00 0.00 0.00 4.08
2688 4800 5.504665 CCGATCCTTTGTATTCTCATGTTGC 60.505 44.000 0.00 0.00 0.00 4.17
2689 4801 5.817296 TCCGATCCTTTGTATTCTCATGTTG 59.183 40.000 0.00 0.00 0.00 3.33
2690 4802 5.989477 TCCGATCCTTTGTATTCTCATGTT 58.011 37.500 0.00 0.00 0.00 2.71
2691 4803 5.614324 TCCGATCCTTTGTATTCTCATGT 57.386 39.130 0.00 0.00 0.00 3.21
2692 4804 8.607441 TTTATCCGATCCTTTGTATTCTCATG 57.393 34.615 0.00 0.00 0.00 3.07
2693 4805 9.057089 GTTTTATCCGATCCTTTGTATTCTCAT 57.943 33.333 0.00 0.00 0.00 2.90
2694 4806 8.265055 AGTTTTATCCGATCCTTTGTATTCTCA 58.735 33.333 0.00 0.00 0.00 3.27
2695 4807 8.664211 AGTTTTATCCGATCCTTTGTATTCTC 57.336 34.615 0.00 0.00 0.00 2.87
2700 4812 9.116067 CCAATAAGTTTTATCCGATCCTTTGTA 57.884 33.333 0.00 0.00 0.00 2.41
2701 4813 7.614192 ACCAATAAGTTTTATCCGATCCTTTGT 59.386 33.333 0.00 0.00 0.00 2.83
2702 4814 7.996385 ACCAATAAGTTTTATCCGATCCTTTG 58.004 34.615 0.00 0.00 0.00 2.77
2703 4815 8.466798 CAACCAATAAGTTTTATCCGATCCTTT 58.533 33.333 0.00 0.00 0.00 3.11
2704 4816 7.614192 ACAACCAATAAGTTTTATCCGATCCTT 59.386 33.333 0.00 0.00 0.00 3.36
2705 4817 7.116736 ACAACCAATAAGTTTTATCCGATCCT 58.883 34.615 0.00 0.00 0.00 3.24
2706 4818 7.329588 ACAACCAATAAGTTTTATCCGATCC 57.670 36.000 0.00 0.00 0.00 3.36
2707 4819 9.072294 CAAACAACCAATAAGTTTTATCCGATC 57.928 33.333 0.00 0.00 33.54 3.69
2708 4820 7.544217 GCAAACAACCAATAAGTTTTATCCGAT 59.456 33.333 0.00 0.00 33.54 4.18
2709 4821 6.864165 GCAAACAACCAATAAGTTTTATCCGA 59.136 34.615 0.00 0.00 33.54 4.55
2710 4822 6.642950 TGCAAACAACCAATAAGTTTTATCCG 59.357 34.615 0.00 0.00 33.54 4.18
2711 4823 7.954788 TGCAAACAACCAATAAGTTTTATCC 57.045 32.000 0.00 0.00 33.54 2.59
2731 4843 3.363351 TGCATCCGCATGTTGCAA 58.637 50.000 10.81 0.00 44.55 4.08
2756 4868 6.485171 ACATACCAGCAAGAAACTATCCTTT 58.515 36.000 0.00 0.00 0.00 3.11
2763 4875 6.054860 AGTGATACATACCAGCAAGAAACT 57.945 37.500 0.00 0.00 0.00 2.66
2792 4904 7.263100 TGATGCACAATGGTACTTATGAATC 57.737 36.000 0.00 0.00 0.00 2.52
2796 4908 7.975058 TGAAAATGATGCACAATGGTACTTATG 59.025 33.333 0.00 0.00 0.00 1.90
2800 4912 5.981088 TGAAAATGATGCACAATGGTACT 57.019 34.783 0.00 0.00 0.00 2.73
2823 4937 2.466846 GCACAATGGTATTTTCCCCCT 58.533 47.619 0.00 0.00 0.00 4.79
2825 4939 2.183679 TGGCACAATGGTATTTTCCCC 58.816 47.619 0.00 0.00 31.92 4.81
2868 4985 7.781693 AGGAAAGATGCACATGGAATTATTACT 59.218 33.333 0.00 0.00 0.00 2.24
2884 5001 6.238593 GGATGTCTATGTTTCAGGAAAGATGC 60.239 42.308 12.96 5.71 35.45 3.91
2886 5003 6.825721 GTGGATGTCTATGTTTCAGGAAAGAT 59.174 38.462 9.06 9.06 37.87 2.40
2899 5016 8.726068 CACACTCTATAGTAGTGGATGTCTATG 58.274 40.741 24.08 13.70 46.97 2.23
2964 5081 1.215647 GCTACTGACAGGTCACCGG 59.784 63.158 7.51 0.00 35.46 5.28
2988 5105 7.645340 GTCAATGCCAACATATTCATCACTAAC 59.355 37.037 0.00 0.00 34.62 2.34
2989 5106 7.201812 GGTCAATGCCAACATATTCATCACTAA 60.202 37.037 0.00 0.00 34.62 2.24
2990 5107 6.262944 GGTCAATGCCAACATATTCATCACTA 59.737 38.462 0.00 0.00 34.62 2.74
2991 5108 5.068198 GGTCAATGCCAACATATTCATCACT 59.932 40.000 0.00 0.00 34.62 3.41
3010 5127 1.748493 GACTTTGTTGTGGCTGGTCAA 59.252 47.619 0.00 0.00 0.00 3.18
3018 5135 1.867233 CGGTGAGAGACTTTGTTGTGG 59.133 52.381 0.00 0.00 0.00 4.17
3039 5156 1.142097 GAGGACTAGAAGCACCGGC 59.858 63.158 0.00 0.00 41.61 6.13
3050 5167 6.911250 TGAACATACTTCTGTTGAGGACTA 57.089 37.500 0.00 0.00 39.40 2.59
3101 5261 1.883084 CCATCGGTAGCACGAAGCC 60.883 63.158 2.41 0.00 46.92 4.35
3167 5386 8.969121 TTAATGTCATGCAAGAAACATACTTG 57.031 30.769 0.00 0.00 44.92 3.16
3168 5387 8.246180 CCTTAATGTCATGCAAGAAACATACTT 58.754 33.333 0.00 0.00 32.28 2.24
3169 5388 7.611467 TCCTTAATGTCATGCAAGAAACATACT 59.389 33.333 0.00 0.00 32.28 2.12
3170 5389 7.761409 TCCTTAATGTCATGCAAGAAACATAC 58.239 34.615 0.00 0.00 32.28 2.39
3174 5394 9.884465 GTATATCCTTAATGTCATGCAAGAAAC 57.116 33.333 0.00 0.00 0.00 2.78
3215 5435 1.542030 TCGTGTGCTTTGGTGTTGTTT 59.458 42.857 0.00 0.00 0.00 2.83
3231 5451 7.878477 TTGTAGATGTTACTAACCTTTCGTG 57.122 36.000 0.00 0.00 0.00 4.35
3232 5452 8.932791 CATTTGTAGATGTTACTAACCTTTCGT 58.067 33.333 0.00 0.00 0.00 3.85
3246 5466 4.215109 GGTATTGGGCCATTTGTAGATGT 58.785 43.478 7.26 0.00 0.00 3.06
3282 5502 1.413118 AAGCCTTTGGTTTGACTGGG 58.587 50.000 0.00 0.00 0.00 4.45
3380 5601 3.135530 AGGATGCTTCTCCTATTCGCTTT 59.864 43.478 0.00 0.00 44.04 3.51
3385 5606 5.988561 CACTTGTAGGATGCTTCTCCTATTC 59.011 44.000 11.72 3.64 46.84 1.75
3403 5624 4.669206 TTGCAAATCATTGGTCACTTGT 57.331 36.364 0.00 0.00 37.02 3.16
3458 5679 6.605471 TTGGACTGATCAAGACTTAGCTTA 57.395 37.500 0.00 0.00 0.00 3.09
3476 5698 2.489938 TGTTGCCACTAGGATTGGAC 57.510 50.000 2.10 0.00 36.02 4.02
3483 5705 3.741344 GCGAAGTATATGTTGCCACTAGG 59.259 47.826 0.00 0.00 38.23 3.02
3559 6205 2.553904 GCATATGGCAGCTAGGAATGGT 60.554 50.000 4.56 0.00 43.97 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.