Multiple sequence alignment - TraesCS6B01G412400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G412400 chr6B 100.000 9628 0 0 1 9628 685987536 685977909 0.000000e+00 17780.0
1 TraesCS6B01G412400 chr6B 82.143 168 25 5 7816 7981 517409507 517409343 1.300000e-28 139.0
2 TraesCS6B01G412400 chr6A 94.659 5860 224 41 51 5899 597359665 597353884 0.000000e+00 9005.0
3 TraesCS6B01G412400 chr6A 96.609 1976 46 8 6093 8048 597353836 597351862 0.000000e+00 3258.0
4 TraesCS6B01G412400 chr6A 95.296 829 29 5 8079 8906 597351868 597351049 0.000000e+00 1306.0
5 TraesCS6B01G412400 chr6A 96.111 180 5 2 5930 6107 24072060 24071881 9.460000e-75 292.0
6 TraesCS6B01G412400 chr6A 100.000 31 0 0 5901 5931 597353867 597353837 3.760000e-04 58.4
7 TraesCS6B01G412400 chr6D 93.359 3418 128 33 578 3944 451538168 451541537 0.000000e+00 4963.0
8 TraesCS6B01G412400 chr6D 95.860 1860 49 15 4053 5899 451542618 451544462 0.000000e+00 2983.0
9 TraesCS6B01G412400 chr6D 94.367 1580 56 9 6093 7667 451544508 451546059 0.000000e+00 2394.0
10 TraesCS6B01G412400 chr6D 93.125 1251 65 14 7665 8905 451546102 451547341 0.000000e+00 1814.0
11 TraesCS6B01G412400 chr6D 98.198 111 2 0 3943 4053 451542469 451542579 2.740000e-45 195.0
12 TraesCS6B01G412400 chr5A 93.345 556 27 4 8907 9456 582890900 582891451 0.000000e+00 813.0
13 TraesCS6B01G412400 chr5A 98.246 171 3 0 5926 6096 382566634 382566804 5.650000e-77 300.0
14 TraesCS6B01G412400 chr5A 96.591 176 6 0 5929 6104 290391862 290391687 9.460000e-75 292.0
15 TraesCS6B01G412400 chr5A 93.158 190 10 2 9439 9628 582891466 582891652 9.520000e-70 276.0
16 TraesCS6B01G412400 chr7D 96.648 179 6 0 5923 6101 459391917 459392095 2.030000e-76 298.0
17 TraesCS6B01G412400 chr7A 96.629 178 5 1 5924 6101 431989282 431989106 2.630000e-75 294.0
18 TraesCS6B01G412400 chr1D 98.225 169 2 1 5928 6095 39871981 39871813 2.630000e-75 294.0
19 TraesCS6B01G412400 chr1D 96.591 176 4 2 5926 6101 238940213 238940386 3.400000e-74 291.0
20 TraesCS6B01G412400 chr1D 82.333 300 34 12 7712 7996 328882208 328882503 9.660000e-60 243.0
21 TraesCS6B01G412400 chr1D 100.000 29 0 0 4459 4487 9369192 9369220 5.000000e-03 54.7
22 TraesCS6B01G412400 chr4B 97.126 174 4 1 5927 6100 488893289 488893117 9.460000e-75 292.0
23 TraesCS6B01G412400 chr1A 92.857 196 9 4 5931 6121 132544221 132544026 7.360000e-71 279.0
24 TraesCS6B01G412400 chr1A 80.667 300 43 8 7711 7997 425717769 425718066 1.630000e-52 219.0
25 TraesCS6B01G412400 chr1A 81.868 182 24 9 7813 7989 36276811 36276634 2.800000e-30 145.0
26 TraesCS6B01G412400 chr2A 81.518 303 32 14 7710 7997 4179971 4179678 2.710000e-55 228.0
27 TraesCS6B01G412400 chr2A 100.000 29 0 0 4459 4487 191434571 191434543 5.000000e-03 54.7
28 TraesCS6B01G412400 chr2A 100.000 28 0 0 4460 4487 384035258 384035285 1.700000e-02 52.8
29 TraesCS6B01G412400 chrUn 87.500 184 18 3 7818 7997 156525651 156525833 3.520000e-49 207.0
30 TraesCS6B01G412400 chr2D 80.066 301 39 9 7710 7997 5688336 5688044 4.560000e-48 204.0
31 TraesCS6B01G412400 chr3B 79.000 200 25 8 7710 7896 167700228 167700423 4.720000e-23 121.0
32 TraesCS6B01G412400 chr7B 100.000 29 0 0 4459 4487 20206616 20206588 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G412400 chr6B 685977909 685987536 9627 True 17780.00 17780 100.0000 1 9628 1 chr6B.!!$R2 9627
1 TraesCS6B01G412400 chr6A 597351049 597359665 8616 True 3406.85 9005 96.6410 51 8906 4 chr6A.!!$R2 8855
2 TraesCS6B01G412400 chr6D 451538168 451547341 9173 False 2469.80 4963 94.9818 578 8905 5 chr6D.!!$F1 8327
3 TraesCS6B01G412400 chr5A 582890900 582891652 752 False 544.50 813 93.2515 8907 9628 2 chr5A.!!$F2 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.032117 TCCCATGACCTCCTCATCGT 60.032 55.000 0.00 0.00 37.53 3.73 F
1467 1492 0.027455 TGTTTTCAGCTGTTCGCGTG 59.973 50.000 14.67 0.00 45.59 5.34 F
3054 3098 1.086634 GCACAGAGATCGGTTCAGCC 61.087 60.000 0.00 0.00 0.00 4.85 F
4490 5519 1.703513 AGCCCTTTAAACCGGAAGAGT 59.296 47.619 9.46 0.00 0.00 3.24 F
5778 6816 0.593128 GCACCTCTTGTCGCATTTGT 59.407 50.000 0.00 0.00 0.00 2.83 F
6836 7908 0.179137 CACACTGAATCCGCTAGCGA 60.179 55.000 37.39 23.12 42.83 4.93 F
7301 8375 1.428370 GCGTGTTGTGAGTGTCTGCA 61.428 55.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1563 0.243907 TAACTCTCGCTGGCACACTC 59.756 55.000 0.00 0.00 0.00 3.51 R
3204 3248 3.872696 TGCAACTTCACGTCCATCATAT 58.127 40.909 0.00 0.00 0.00 1.78 R
4999 6037 0.813184 CTTGCTTACCAGTGCCATGG 59.187 55.000 7.63 7.63 46.47 3.66 R
6230 7295 1.118356 TTGGACCCAAAAAGCCGCAT 61.118 50.000 0.00 0.00 32.44 4.73 R
7374 8448 0.247460 CACTCAGTCGCCATCCTTGA 59.753 55.000 0.00 0.00 0.00 3.02 R
7682 8801 1.148273 GGTGTGACAAGGCTCCACA 59.852 57.895 11.60 11.60 38.34 4.17 R
9093 10223 0.254178 AGGTGATGGCAAAGCGATCT 59.746 50.000 13.68 0.00 42.71 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.516227 TTTGGGTCAACAACACCTCA 57.484 45.000 0.00 0.00 33.96 3.86
91 92 2.154462 GGGTCAACAACACCTCATCAG 58.846 52.381 0.00 0.00 33.96 2.90
92 93 2.487265 GGGTCAACAACACCTCATCAGT 60.487 50.000 0.00 0.00 33.96 3.41
93 94 3.244422 GGGTCAACAACACCTCATCAGTA 60.244 47.826 0.00 0.00 33.96 2.74
103 104 1.335415 CCTCATCAGTAGTCGGATGCG 60.335 57.143 0.00 0.00 42.82 4.73
131 132 0.459237 CAGTCATCCACTCGTGCTCC 60.459 60.000 0.00 0.00 30.26 4.70
156 157 0.032117 TCCCATGACCTCCTCATCGT 60.032 55.000 0.00 0.00 37.53 3.73
158 159 2.039418 CCCATGACCTCCTCATCGTAA 58.961 52.381 0.00 0.00 37.53 3.18
159 160 2.224066 CCCATGACCTCCTCATCGTAAC 60.224 54.545 0.00 0.00 37.53 2.50
163 164 2.242965 TGACCTCCTCATCGTAACCCTA 59.757 50.000 0.00 0.00 0.00 3.53
172 173 1.766494 TCGTAACCCTATCCTCGCAA 58.234 50.000 0.00 0.00 0.00 4.85
179 180 0.537188 CCTATCCTCGCAACACTGGT 59.463 55.000 0.00 0.00 0.00 4.00
181 182 1.204704 CTATCCTCGCAACACTGGTGA 59.795 52.381 7.78 0.00 0.00 4.02
182 183 0.036952 ATCCTCGCAACACTGGTGAG 60.037 55.000 7.78 0.00 41.41 3.51
183 184 2.320587 CCTCGCAACACTGGTGAGC 61.321 63.158 7.78 9.63 40.63 4.26
184 185 2.280797 TCGCAACACTGGTGAGCC 60.281 61.111 7.78 0.00 33.86 4.70
185 186 3.357079 CGCAACACTGGTGAGCCC 61.357 66.667 7.78 0.00 33.86 5.19
186 187 2.985847 GCAACACTGGTGAGCCCC 60.986 66.667 7.78 0.00 32.25 5.80
187 188 2.839098 CAACACTGGTGAGCCCCT 59.161 61.111 7.78 0.00 0.00 4.79
188 189 1.302832 CAACACTGGTGAGCCCCTC 60.303 63.158 7.78 0.00 0.00 4.30
189 190 2.883828 AACACTGGTGAGCCCCTCG 61.884 63.158 7.78 0.00 32.35 4.63
190 191 4.767255 CACTGGTGAGCCCCTCGC 62.767 72.222 0.00 0.00 39.93 5.03
203 204 1.302033 CCTCGCAGCACTTGAGGTT 60.302 57.895 6.02 0.00 43.48 3.50
205 206 1.406069 CCTCGCAGCACTTGAGGTTAT 60.406 52.381 6.02 0.00 43.48 1.89
211 212 1.075374 AGCACTTGAGGTTATTGCCCA 59.925 47.619 0.00 0.00 33.48 5.36
212 213 2.102578 GCACTTGAGGTTATTGCCCAT 58.897 47.619 0.00 0.00 0.00 4.00
213 214 3.053693 AGCACTTGAGGTTATTGCCCATA 60.054 43.478 0.00 0.00 33.48 2.74
224 225 3.630204 GCCCATAGCATGACGACG 58.370 61.111 0.00 0.00 42.97 5.12
252 253 1.734477 CACCGTCTCCAAGCACGAG 60.734 63.158 0.00 0.00 38.32 4.18
254 255 1.153939 CCGTCTCCAAGCACGAGAG 60.154 63.158 0.00 0.00 37.05 3.20
290 291 3.849951 CCCGGTAGCGCCACTCAT 61.850 66.667 9.24 0.00 36.97 2.90
343 344 2.031245 CCTGACTTGCAACAACGCATAA 60.031 45.455 0.00 0.00 42.62 1.90
344 345 2.973224 CTGACTTGCAACAACGCATAAC 59.027 45.455 0.00 0.00 42.62 1.89
366 367 1.156034 GCGGCGACCAACCTATAACC 61.156 60.000 12.98 0.00 0.00 2.85
370 371 1.474498 GCGACCAACCTATAACCCCAG 60.474 57.143 0.00 0.00 0.00 4.45
375 376 0.544697 AACCTATAACCCCAGCACCG 59.455 55.000 0.00 0.00 0.00 4.94
385 386 4.081030 CAGCACCGTTCGCAGCTG 62.081 66.667 10.11 10.11 46.98 4.24
396 397 4.687215 GCAGCTGCGGTGACAGGA 62.687 66.667 25.23 0.00 38.16 3.86
404 405 0.321653 GCGGTGACAGGACTTCCAAT 60.322 55.000 0.00 0.00 38.89 3.16
408 409 3.000727 GGTGACAGGACTTCCAATAACG 58.999 50.000 0.00 0.00 38.89 3.18
415 416 3.511146 AGGACTTCCAATAACGGTCGTAA 59.489 43.478 0.00 0.00 38.89 3.18
421 422 2.273557 CAATAACGGTCGTAACCCCTG 58.726 52.381 0.00 0.00 43.21 4.45
423 424 0.887933 TAACGGTCGTAACCCCTGAC 59.112 55.000 0.00 0.00 43.21 3.51
425 426 1.114722 ACGGTCGTAACCCCTGACAA 61.115 55.000 0.00 0.00 43.21 3.18
429 430 0.034337 TCGTAACCCCTGACAACAGC 59.966 55.000 0.00 0.00 42.25 4.40
433 434 4.641645 CCCCTGACAACAGCGGCA 62.642 66.667 1.45 0.00 42.25 5.69
435 436 2.693762 CCCTGACAACAGCGGCATG 61.694 63.158 1.45 0.48 42.25 4.06
451 452 1.073025 ATGGTGAGCTTTGCCGACA 59.927 52.632 0.00 0.00 0.00 4.35
465 466 0.743688 CCGACAGAGGATGACTGAGG 59.256 60.000 0.00 0.00 38.55 3.86
466 467 1.468985 CGACAGAGGATGACTGAGGT 58.531 55.000 0.00 0.00 38.55 3.85
467 468 1.133982 CGACAGAGGATGACTGAGGTG 59.866 57.143 0.00 0.00 38.55 4.00
468 469 1.480137 GACAGAGGATGACTGAGGTGG 59.520 57.143 0.00 0.00 38.55 4.61
478 479 0.616111 ACTGAGGTGGTGCTAGGAGG 60.616 60.000 0.00 0.00 0.00 4.30
493 494 1.610673 GAGGTGTGGGAGGCTCTCA 60.611 63.158 14.41 14.41 31.08 3.27
496 497 1.610673 GTGTGGGAGGCTCTCAGGA 60.611 63.158 19.45 4.40 31.08 3.86
512 513 0.824182 AGGAAGCTAGATCCCGTCGG 60.824 60.000 3.60 3.60 37.71 4.79
521 522 1.797211 GATCCCGTCGGAGTAGCAGG 61.797 65.000 14.39 0.00 43.12 4.85
522 523 2.569218 ATCCCGTCGGAGTAGCAGGT 62.569 60.000 14.39 0.00 43.12 4.00
524 525 1.445716 CCCGTCGGAGTAGCAGGTAG 61.446 65.000 14.39 0.00 0.00 3.18
525 526 1.445716 CCGTCGGAGTAGCAGGTAGG 61.446 65.000 4.91 0.00 0.00 3.18
528 529 0.752009 TCGGAGTAGCAGGTAGGCAG 60.752 60.000 0.00 0.00 35.83 4.85
542 543 3.705502 GCAGGTGCCAGAGAGAGA 58.294 61.111 0.00 0.00 34.31 3.10
543 544 1.516892 GCAGGTGCCAGAGAGAGAG 59.483 63.158 0.00 0.00 34.31 3.20
556 557 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
558 559 5.960811 AGAGAGAGAGAGAGAGAGAGAGAAA 59.039 44.000 0.00 0.00 0.00 2.52
559 560 6.098124 AGAGAGAGAGAGAGAGAGAGAGAAAG 59.902 46.154 0.00 0.00 0.00 2.62
560 561 4.775236 AGAGAGAGAGAGAGAGAGAAAGC 58.225 47.826 0.00 0.00 0.00 3.51
561 562 4.225942 AGAGAGAGAGAGAGAGAGAAAGCA 59.774 45.833 0.00 0.00 0.00 3.91
562 563 5.104193 AGAGAGAGAGAGAGAGAGAAAGCAT 60.104 44.000 0.00 0.00 0.00 3.79
563 564 6.100279 AGAGAGAGAGAGAGAGAGAAAGCATA 59.900 42.308 0.00 0.00 0.00 3.14
565 566 7.293073 AGAGAGAGAGAGAGAGAAAGCATAAT 58.707 38.462 0.00 0.00 0.00 1.28
566 567 8.439971 AGAGAGAGAGAGAGAGAAAGCATAATA 58.560 37.037 0.00 0.00 0.00 0.98
567 568 8.995027 AGAGAGAGAGAGAGAAAGCATAATAA 57.005 34.615 0.00 0.00 0.00 1.40
568 569 9.420118 AGAGAGAGAGAGAGAAAGCATAATAAA 57.580 33.333 0.00 0.00 0.00 1.40
570 571 9.420118 AGAGAGAGAGAGAAAGCATAATAAAGA 57.580 33.333 0.00 0.00 0.00 2.52
572 573 9.200817 AGAGAGAGAGAAAGCATAATAAAGAGT 57.799 33.333 0.00 0.00 0.00 3.24
573 574 9.248291 GAGAGAGAGAAAGCATAATAAAGAGTG 57.752 37.037 0.00 0.00 0.00 3.51
575 576 8.715191 AGAGAGAAAGCATAATAAAGAGTGTG 57.285 34.615 0.00 0.00 0.00 3.82
576 577 7.768120 AGAGAGAAAGCATAATAAAGAGTGTGG 59.232 37.037 0.00 0.00 0.00 4.17
597 598 1.069358 CTGGGAGGAAGAAGGCGATAC 59.931 57.143 0.00 0.00 0.00 2.24
598 599 1.120530 GGGAGGAAGAAGGCGATACA 58.879 55.000 0.00 0.00 0.00 2.29
605 606 3.312697 GGAAGAAGGCGATACATTTCCAC 59.687 47.826 0.00 0.00 34.27 4.02
607 608 3.798202 AGAAGGCGATACATTTCCACTC 58.202 45.455 0.00 0.00 0.00 3.51
626 627 5.280727 CCACTCAAGGAAGAAGATAAGGGTT 60.281 44.000 0.00 0.00 0.00 4.11
627 628 5.877564 CACTCAAGGAAGAAGATAAGGGTTC 59.122 44.000 0.00 0.00 0.00 3.62
636 637 0.177373 GATAAGGGTTCGGGAAGCGT 59.823 55.000 4.71 2.60 39.53 5.07
647 648 4.754667 GAAGCGTCGGGTGGGTCC 62.755 72.222 0.00 0.00 0.00 4.46
665 666 2.587753 CGCAGGTCACGTGGTTGT 60.588 61.111 17.00 0.00 0.00 3.32
705 706 1.666054 ACGTCTAGGATCAGTCGACC 58.334 55.000 13.01 0.00 32.52 4.79
716 717 1.084370 CAGTCGACCGAAATGGAGGC 61.084 60.000 13.01 0.00 42.00 4.70
777 782 2.276244 CTGCACGCTCGCAAATCG 60.276 61.111 0.00 0.00 42.45 3.34
779 784 3.788766 GCACGCTCGCAAATCGGT 61.789 61.111 0.00 0.00 39.05 4.69
780 785 2.096406 CACGCTCGCAAATCGGTG 59.904 61.111 0.00 0.00 39.05 4.94
781 786 3.788766 ACGCTCGCAAATCGGTGC 61.789 61.111 0.00 0.00 41.32 5.01
884 891 1.727022 CGAAGCAAACCAGCAAGCG 60.727 57.895 0.00 0.00 36.85 4.68
885 892 1.654220 GAAGCAAACCAGCAAGCGA 59.346 52.632 0.00 0.00 36.85 4.93
907 914 2.929964 GCCCAGATCCAAACCCCCA 61.930 63.158 0.00 0.00 0.00 4.96
908 915 1.000359 CCCAGATCCAAACCCCCAC 60.000 63.158 0.00 0.00 0.00 4.61
914 921 4.631740 CCAAACCCCCACCCCCAC 62.632 72.222 0.00 0.00 0.00 4.61
915 922 4.631740 CAAACCCCCACCCCCACC 62.632 72.222 0.00 0.00 0.00 4.61
966 973 3.089874 CTCCATGCCCTCCCGGAA 61.090 66.667 0.73 0.00 0.00 4.30
1041 1048 3.213402 CTCCCGCTCGTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
1269 1291 0.875040 TGCCGTCGAACGCTGTAAAA 60.875 50.000 6.54 0.00 40.91 1.52
1323 1345 4.918278 TCGTGTCCCCGTCCCACA 62.918 66.667 0.00 0.00 0.00 4.17
1324 1346 4.675029 CGTGTCCCCGTCCCACAC 62.675 72.222 0.00 0.00 37.63 3.82
1341 1363 4.530857 CCCCCTAAGCGCCACTCG 62.531 72.222 2.29 0.00 42.12 4.18
1359 1381 3.701530 CGTTGCGTTGCTCAGCGA 61.702 61.111 10.19 0.00 39.89 4.93
1360 1382 2.171940 GTTGCGTTGCTCAGCGAG 59.828 61.111 10.19 1.80 37.19 5.03
1361 1383 3.043713 TTGCGTTGCTCAGCGAGG 61.044 61.111 10.19 1.85 37.19 4.63
1365 1387 3.123620 GTTGCTCAGCGAGGCCTG 61.124 66.667 12.00 3.42 0.00 4.85
1376 1398 2.759795 AGGCCTGCCCTCTTTGTC 59.240 61.111 3.11 0.00 41.21 3.18
1384 1406 2.045926 CCTCTTTGTCGCCCCCTG 60.046 66.667 0.00 0.00 0.00 4.45
1385 1407 2.045926 CTCTTTGTCGCCCCCTGG 60.046 66.667 0.00 0.00 0.00 4.45
1402 1424 2.817396 GCCTCTGAAGCCGTGCTC 60.817 66.667 0.00 0.00 38.25 4.26
1415 1440 1.019673 CGTGCTCATGGAGAAATGGG 58.980 55.000 0.00 0.00 0.00 4.00
1417 1442 2.019984 GTGCTCATGGAGAAATGGGTC 58.980 52.381 0.00 0.00 30.13 4.46
1418 1443 1.634973 TGCTCATGGAGAAATGGGTCA 59.365 47.619 0.00 0.00 30.13 4.02
1433 1458 5.825593 ATGGGTCATGGTAGGTATTAGTG 57.174 43.478 0.00 0.00 0.00 2.74
1462 1487 6.865205 AGCTTTTATCATGTTTTCAGCTGTTC 59.135 34.615 14.67 3.65 0.00 3.18
1464 1489 2.686558 TCATGTTTTCAGCTGTTCGC 57.313 45.000 14.67 4.02 39.57 4.70
1467 1492 0.027455 TGTTTTCAGCTGTTCGCGTG 59.973 50.000 14.67 0.00 45.59 5.34
1479 1504 2.028763 TGTTCGCGTGATCTTATTTCGC 59.971 45.455 5.77 0.00 42.78 4.70
1493 1518 1.152510 TTTCGCGCTGCATTTGAGTA 58.847 45.000 5.56 0.00 0.00 2.59
1537 1563 5.302059 TGTCTAGCTGCCTAGGTTAAGTATG 59.698 44.000 11.31 1.60 41.18 2.39
1587 1629 7.389053 GTGTTCAGATGAATCTTGGAAGTACTT 59.611 37.037 8.13 8.13 36.33 2.24
1596 1638 5.304686 TCTTGGAAGTACTTGTTCATGGT 57.695 39.130 14.14 0.00 0.00 3.55
1683 1725 9.862149 CAAAGTGGGAGGTTTAGGTAATAATAT 57.138 33.333 0.00 0.00 0.00 1.28
1707 1749 7.202016 TCATGTTGAGTTTGTTTACCAGATC 57.798 36.000 0.00 0.00 0.00 2.75
1735 1777 6.840780 ACTCTTTTTGTTTGGGATCTATGG 57.159 37.500 0.00 0.00 0.00 2.74
1767 1810 6.821388 TCTCTTTTGATCTATCAGTTAGGCC 58.179 40.000 0.00 0.00 38.19 5.19
1784 1827 2.261671 CGTCAAGTAGCCGGCAGT 59.738 61.111 31.54 14.78 0.00 4.40
2487 2531 3.985279 TGTTTAACTGGACACGATCTTCG 59.015 43.478 0.00 0.00 46.93 3.79
2622 2666 4.532521 ACTTTACCTGATTCCAGTACAGCT 59.467 41.667 0.00 0.00 38.74 4.24
3054 3098 1.086634 GCACAGAGATCGGTTCAGCC 61.087 60.000 0.00 0.00 0.00 4.85
3204 3248 3.278574 CACAGTTGTCTTTGAGGGTTCA 58.721 45.455 0.00 0.00 0.00 3.18
3670 3723 4.402155 CCATTTGTAGGTGTATGCCATTGT 59.598 41.667 0.00 0.00 0.00 2.71
3813 3866 3.985019 TTACGTTAGGGCTGGATTTCA 57.015 42.857 0.00 0.00 0.00 2.69
4190 5217 4.961585 ACTCCCTCCCTTACAGTTTAGAT 58.038 43.478 0.00 0.00 0.00 1.98
4490 5519 1.703513 AGCCCTTTAAACCGGAAGAGT 59.296 47.619 9.46 0.00 0.00 3.24
4521 5550 9.575783 GTATTTTTCTACAAACTTGGTCAAACA 57.424 29.630 0.00 0.00 0.00 2.83
4527 5557 8.918202 TCTACAAACTTGGTCAAACATTATCT 57.082 30.769 0.00 0.00 0.00 1.98
4528 5558 9.349713 TCTACAAACTTGGTCAAACATTATCTT 57.650 29.630 0.00 0.00 0.00 2.40
4623 5661 9.881649 CCAGATATACTCATTTGTATGCAGTAT 57.118 33.333 0.00 0.00 37.97 2.12
4784 5822 2.868583 CGTTCCTGTATGATTGCTCCTG 59.131 50.000 0.00 0.00 0.00 3.86
4864 5902 3.339141 TGTCGCTGGTATTGTGCATTTA 58.661 40.909 0.00 0.00 0.00 1.40
4999 6037 5.761234 AGAGGATATGTCGTCTCTTAGTCAC 59.239 44.000 8.68 0.00 44.04 3.67
5033 6071 7.920227 TGGTAAGCAAGATTAAACCCTACTTA 58.080 34.615 0.00 0.00 0.00 2.24
5094 6132 3.746492 GCTGTTTAATCCTCGACAGTGTT 59.254 43.478 0.00 0.00 41.11 3.32
5339 6377 5.258051 TCTCTGTTGTTACAACCAAAACCT 58.742 37.500 23.20 0.00 32.92 3.50
5641 6679 0.994247 TGGATGATGGTCTGGTTGCT 59.006 50.000 0.00 0.00 0.00 3.91
5778 6816 0.593128 GCACCTCTTGTCGCATTTGT 59.407 50.000 0.00 0.00 0.00 2.83
5885 6925 9.394767 ACTGTATTAAACATGCACAATCATAGA 57.605 29.630 0.00 0.00 37.50 1.98
5899 6939 6.000219 ACAATCATAGATCCTTGCACCATAC 59.000 40.000 0.00 0.00 0.00 2.39
5931 6986 5.916661 TCCAAGAGATGTCACCTAACTAC 57.083 43.478 0.00 0.00 0.00 2.73
5932 6987 5.580998 TCCAAGAGATGTCACCTAACTACT 58.419 41.667 0.00 0.00 0.00 2.57
5933 6988 5.652891 TCCAAGAGATGTCACCTAACTACTC 59.347 44.000 0.00 0.00 0.00 2.59
5934 6989 5.163499 CCAAGAGATGTCACCTAACTACTCC 60.163 48.000 0.00 0.00 0.00 3.85
5935 6990 4.538738 AGAGATGTCACCTAACTACTCCC 58.461 47.826 0.00 0.00 0.00 4.30
5936 6991 4.230964 AGAGATGTCACCTAACTACTCCCT 59.769 45.833 0.00 0.00 0.00 4.20
5937 6992 4.538738 AGATGTCACCTAACTACTCCCTC 58.461 47.826 0.00 0.00 0.00 4.30
5938 6993 3.097342 TGTCACCTAACTACTCCCTCC 57.903 52.381 0.00 0.00 0.00 4.30
5939 6994 2.022934 GTCACCTAACTACTCCCTCCG 58.977 57.143 0.00 0.00 0.00 4.63
5940 6995 1.637553 TCACCTAACTACTCCCTCCGT 59.362 52.381 0.00 0.00 0.00 4.69
5941 6996 2.042162 TCACCTAACTACTCCCTCCGTT 59.958 50.000 0.00 0.00 0.00 4.44
5942 6997 2.426381 CACCTAACTACTCCCTCCGTTC 59.574 54.545 0.00 0.00 0.00 3.95
5943 6998 2.030371 CCTAACTACTCCCTCCGTTCC 58.970 57.143 0.00 0.00 0.00 3.62
5944 6999 2.357986 CCTAACTACTCCCTCCGTTCCT 60.358 54.545 0.00 0.00 0.00 3.36
5945 7000 3.117738 CCTAACTACTCCCTCCGTTCCTA 60.118 52.174 0.00 0.00 0.00 2.94
5946 7001 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5947 7002 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5948 7003 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5949 7004 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5950 7005 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5951 7006 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5952 7007 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5953 7008 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5954 7009 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5955 7010 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5956 7011 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5957 7012 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5958 7013 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5959 7014 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
5960 7015 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
5977 7032 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5978 7033 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
5994 7049 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
5995 7050 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
5996 7051 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
5997 7052 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
5998 7053 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
5999 7054 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
6000 7055 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
6001 7056 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
6002 7057 6.432607 ACCACATACGGATGTATATAGACG 57.567 41.667 14.23 0.00 44.82 4.18
6003 7058 5.942236 ACCACATACGGATGTATATAGACGT 59.058 40.000 14.23 0.00 44.82 4.34
6004 7059 7.105588 ACCACATACGGATGTATATAGACGTA 58.894 38.462 14.23 9.65 44.82 3.57
6005 7060 7.065085 ACCACATACGGATGTATATAGACGTAC 59.935 40.741 14.23 0.00 44.82 3.67
6006 7061 7.279536 CCACATACGGATGTATATAGACGTACT 59.720 40.741 14.23 0.00 44.82 2.73
6007 7062 8.663025 CACATACGGATGTATATAGACGTACTT 58.337 37.037 14.23 0.00 44.82 2.24
6008 7063 9.224267 ACATACGGATGTATATAGACGTACTTT 57.776 33.333 12.79 0.00 44.77 2.66
6012 7067 9.149225 ACGGATGTATATAGACGTACTTTAGAG 57.851 37.037 0.63 0.00 32.30 2.43
6013 7068 9.149225 CGGATGTATATAGACGTACTTTAGAGT 57.851 37.037 0.63 0.00 39.97 3.24
6022 7077 7.918536 AGACGTACTTTAGAGTGTAGATTCA 57.081 36.000 0.00 0.00 36.60 2.57
6023 7078 7.750769 AGACGTACTTTAGAGTGTAGATTCAC 58.249 38.462 0.00 0.00 36.60 3.18
6034 7089 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6035 7090 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6036 7091 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6037 7092 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6038 7093 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6039 7094 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6040 7095 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6041 7096 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6042 7097 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6043 7098 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6044 7099 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6045 7100 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6046 7101 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6047 7102 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
6048 7103 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
6049 7104 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
6050 7105 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
6051 7106 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
6052 7107 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
6053 7108 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
6054 7109 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
6055 7110 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
6056 7111 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
6057 7112 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
6058 7113 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
6059 7114 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
6060 7115 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
6061 7116 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
6065 7120 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
6068 7123 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
6069 7124 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
6070 7125 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
6085 7140 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6086 7141 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6087 7142 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6088 7143 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6089 7144 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6090 7145 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6091 7146 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6230 7295 6.069789 AGTCCAAAAAGATCTGATCTCCATGA 60.070 38.462 19.78 10.62 39.08 3.07
6308 7373 4.970003 GCAAAATGCTTACCGTGACATATC 59.030 41.667 0.00 0.00 40.96 1.63
6393 7458 2.710377 TGACATGCCTATGGTGTGTTC 58.290 47.619 0.00 0.00 38.66 3.18
6454 7519 5.189145 TGAGTTAATTCTCCAGGGAAGGTAC 59.811 44.000 0.00 0.00 33.93 3.34
6641 7709 9.900710 CAATCAGTTACACCTATGAGTCTATAC 57.099 37.037 0.00 0.00 0.00 1.47
6711 7783 4.333913 AAGCAAACCATAAATGCACACA 57.666 36.364 0.00 0.00 42.45 3.72
6836 7908 0.179137 CACACTGAATCCGCTAGCGA 60.179 55.000 37.39 23.12 42.83 4.93
7122 8194 4.296056 AGTCCTATACTTGGTTAGGGTGG 58.704 47.826 0.00 0.00 33.35 4.61
7156 8228 7.781324 TTCCTTGATCTATTTCAGGCTTTTT 57.219 32.000 0.00 0.00 0.00 1.94
7235 8307 7.489757 GCGACTAAGACAATCTTAAGATCTGTT 59.510 37.037 18.19 12.82 38.38 3.16
7301 8375 1.428370 GCGTGTTGTGAGTGTCTGCA 61.428 55.000 0.00 0.00 0.00 4.41
7374 8448 3.456277 AGAATGGAGACGAATTAAGGGCT 59.544 43.478 0.00 0.00 0.00 5.19
7682 8801 1.642762 AGATCATTGCCCTCCCAAACT 59.357 47.619 0.00 0.00 0.00 2.66
7705 8824 0.603975 GAGCCTTGTCACACCCAGTC 60.604 60.000 0.00 0.00 0.00 3.51
7741 8860 2.486203 TCGCAGGATTTGTAAAACGCAT 59.514 40.909 0.00 0.00 0.00 4.73
7931 9050 3.617263 CCTACGAATCAAGCAACCTACAC 59.383 47.826 0.00 0.00 0.00 2.90
8056 9178 3.998099 AAAAGCTTCCTTCAAGAGTGC 57.002 42.857 0.00 0.00 33.29 4.40
8061 9183 3.505293 AGCTTCCTTCAAGAGTGCATTTC 59.495 43.478 0.00 0.00 33.29 2.17
8101 9226 8.260818 TGATTTCCTTGATCCTACACTTAGAAG 58.739 37.037 0.00 0.00 0.00 2.85
8106 9231 6.983307 CCTTGATCCTACACTTAGAAGTCATG 59.017 42.308 0.00 0.00 37.08 3.07
8124 9250 9.813080 GAAGTCATGTTACTAGTTTGTTTGATC 57.187 33.333 0.00 0.00 0.00 2.92
8195 9321 1.601903 TGGCACAACGATTTCACTGTC 59.398 47.619 0.00 0.00 31.92 3.51
8262 9388 1.338769 CCCCACCAAACTCCTAAGACG 60.339 57.143 0.00 0.00 0.00 4.18
8417 9543 1.668826 TATGGTTCTGCTCCCCAGTT 58.331 50.000 0.00 0.00 42.38 3.16
8461 9589 0.874390 TGCGTTGCCAAGAAGCTAAG 59.126 50.000 0.00 0.00 0.00 2.18
8501 9629 0.034896 AGTTACTTGGGTCACTGCCG 59.965 55.000 0.00 0.00 29.81 5.69
8537 9665 4.588278 GTTATTTCTCAAGCCGATTTCCG 58.412 43.478 0.00 0.00 38.18 4.30
8585 9713 5.393962 GTCATGTCAGTTTATTGCAAGGAC 58.606 41.667 4.94 3.41 0.00 3.85
8630 9758 7.606135 TTTCATTGGGATCTCGGTATAACTA 57.394 36.000 0.00 0.00 0.00 2.24
8661 9789 4.030216 TGTCATCCCTCTACTGTATGCAA 58.970 43.478 0.00 0.00 0.00 4.08
8662 9790 4.655649 TGTCATCCCTCTACTGTATGCAAT 59.344 41.667 0.00 0.00 0.00 3.56
8663 9791 4.993584 GTCATCCCTCTACTGTATGCAATG 59.006 45.833 0.00 0.00 0.00 2.82
8664 9792 3.475566 TCCCTCTACTGTATGCAATGC 57.524 47.619 0.00 0.00 0.00 3.56
8665 9793 2.771372 TCCCTCTACTGTATGCAATGCA 59.229 45.455 11.44 11.44 44.86 3.96
8691 9820 8.860088 ACTAACAAATCTTCACCTAGCAAAATT 58.140 29.630 0.00 0.00 0.00 1.82
8692 9821 7.951530 AACAAATCTTCACCTAGCAAAATTG 57.048 32.000 0.00 0.00 0.00 2.32
8693 9822 7.054491 ACAAATCTTCACCTAGCAAAATTGT 57.946 32.000 0.00 0.00 0.00 2.71
8694 9823 8.177119 ACAAATCTTCACCTAGCAAAATTGTA 57.823 30.769 0.00 0.00 0.00 2.41
8695 9824 8.806146 ACAAATCTTCACCTAGCAAAATTGTAT 58.194 29.630 0.00 0.00 0.00 2.29
8696 9825 9.079833 CAAATCTTCACCTAGCAAAATTGTATG 57.920 33.333 0.00 0.00 0.00 2.39
8697 9826 7.944729 ATCTTCACCTAGCAAAATTGTATGT 57.055 32.000 0.00 0.00 0.00 2.29
8698 9827 9.461312 AATCTTCACCTAGCAAAATTGTATGTA 57.539 29.630 0.00 0.00 0.00 2.29
8860 9990 7.670364 TGGATAGATTTTCAGAATATCTCGCA 58.330 34.615 16.80 3.88 31.46 5.10
8924 10054 3.186119 GAGTCAATCTGCTTCTTCCTCG 58.814 50.000 0.00 0.00 0.00 4.63
8928 10058 1.561643 ATCTGCTTCTTCCTCGGTCA 58.438 50.000 0.00 0.00 0.00 4.02
8935 10065 0.984230 TCTTCCTCGGTCATTTGCCT 59.016 50.000 0.00 0.00 0.00 4.75
8943 10073 1.177401 GGTCATTTGCCTCCAGGAAC 58.823 55.000 0.00 0.00 37.39 3.62
8953 10083 0.543749 CTCCAGGAACCTAAGCTGGG 59.456 60.000 0.00 4.63 35.99 4.45
8954 10084 0.914417 TCCAGGAACCTAAGCTGGGG 60.914 60.000 10.25 7.22 35.99 4.96
8981 10111 9.943163 GGATATTTCTACTTTCAAAGCAATCTC 57.057 33.333 0.00 0.00 0.00 2.75
8996 10126 5.504853 AGCAATCTCTTTCCTTCCTTTAGG 58.495 41.667 0.00 0.00 36.59 2.69
9067 10197 4.680237 CAGCGTGGGACGAGGCAA 62.680 66.667 0.00 0.00 46.05 4.52
9093 10223 2.494059 GAGTGCACCAAAGTTCAGCTA 58.506 47.619 14.63 0.00 0.00 3.32
9160 10292 3.441496 TGTCCTTCAGTTACGAACGTT 57.559 42.857 0.00 0.00 36.23 3.99
9164 10296 5.984926 TGTCCTTCAGTTACGAACGTTTATT 59.015 36.000 0.46 0.00 36.23 1.40
9165 10297 7.144661 TGTCCTTCAGTTACGAACGTTTATTA 58.855 34.615 0.46 0.00 36.23 0.98
9166 10298 7.814107 TGTCCTTCAGTTACGAACGTTTATTAT 59.186 33.333 0.46 0.00 36.23 1.28
9215 10347 7.927683 TCTGAATTTCTAGATTCCCTCATCT 57.072 36.000 0.00 0.00 35.61 2.90
9249 10381 4.396790 TCTTATTAATTGCCCGTGGACAAC 59.603 41.667 0.00 0.00 0.00 3.32
9259 10391 1.762957 CCGTGGACAACTATGGGAGAT 59.237 52.381 0.00 0.00 31.27 2.75
9269 10401 8.624776 GGACAACTATGGGAGATTTTAATCTTG 58.375 37.037 6.45 1.83 45.39 3.02
9271 10403 9.533831 ACAACTATGGGAGATTTTAATCTTGTT 57.466 29.630 6.45 3.92 45.39 2.83
9293 10425 4.916041 TTGAGACCCTCTGACAAATCAT 57.084 40.909 0.00 0.00 33.22 2.45
9306 10438 7.300320 TCTGACAAATCATCGTCAAATTTCAG 58.700 34.615 0.00 0.00 41.39 3.02
9309 10441 3.680642 ATCATCGTCAAATTTCAGCGG 57.319 42.857 0.00 0.00 0.00 5.52
9366 10502 5.108187 TCAATCTTCAGGAAATCCCTCTG 57.892 43.478 0.00 0.00 45.60 3.35
9371 10507 2.631384 TCAGGAAATCCCTCTGTTGGA 58.369 47.619 0.00 0.00 45.60 3.53
9378 10514 1.794714 TCCCTCTGTTGGATAGGCTC 58.205 55.000 0.00 0.00 0.00 4.70
9430 10566 1.202582 CTCTCGTTCGGTTGGACAGAT 59.797 52.381 0.00 0.00 0.00 2.90
9434 10570 1.993370 CGTTCGGTTGGACAGATCTTC 59.007 52.381 0.00 0.00 0.00 2.87
9489 10657 2.486982 CTCAACTCTTTCGTCCCTCGTA 59.513 50.000 0.00 0.00 40.80 3.43
9491 10659 0.801251 ACTCTTTCGTCCCTCGTACG 59.199 55.000 9.53 9.53 41.64 3.67
9504 10672 0.462581 TCGTACGCACTACCTCCGAT 60.463 55.000 11.24 0.00 0.00 4.18
9522 10690 5.345702 TCCGATCACGTTCCTATTTTACTG 58.654 41.667 0.00 0.00 37.88 2.74
9524 10692 4.025979 CGATCACGTTCCTATTTTACTGGC 60.026 45.833 0.00 0.00 34.56 4.85
9534 10702 0.476338 TTTTACTGGCAGCCTCCACA 59.524 50.000 15.89 0.00 31.74 4.17
9536 10704 0.250727 TTACTGGCAGCCTCCACAAC 60.251 55.000 15.89 0.00 31.74 3.32
9551 10719 2.557452 CCACAACTATTCCCAAGCCCTT 60.557 50.000 0.00 0.00 0.00 3.95
9559 10727 1.937191 TCCCAAGCCCTTGATTTTCC 58.063 50.000 9.50 0.00 42.93 3.13
9586 10754 6.586868 TCAACAATTGTTTGCTGACAAATC 57.413 33.333 21.10 0.00 46.93 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.620259 AGTATGCATATCTCGATAGTATCTTGA 57.380 33.333 10.16 6.52 37.40 3.02
74 75 4.558697 CGACTACTGATGAGGTGTTGTTGA 60.559 45.833 0.00 0.00 0.00 3.18
75 76 3.675225 CGACTACTGATGAGGTGTTGTTG 59.325 47.826 0.00 0.00 0.00 3.33
76 77 3.306088 CCGACTACTGATGAGGTGTTGTT 60.306 47.826 0.00 0.00 0.00 2.83
78 79 2.492088 TCCGACTACTGATGAGGTGTTG 59.508 50.000 0.00 0.00 0.00 3.33
87 88 0.249073 GTGCGCATCCGACTACTGAT 60.249 55.000 15.91 0.00 36.29 2.90
91 92 0.577269 GATTGTGCGCATCCGACTAC 59.423 55.000 15.91 0.00 36.29 2.73
92 93 0.174617 TGATTGTGCGCATCCGACTA 59.825 50.000 15.91 0.00 36.29 2.59
93 94 1.079197 TGATTGTGCGCATCCGACT 60.079 52.632 15.91 0.00 36.29 4.18
103 104 2.417933 GAGTGGATGACTGTGATTGTGC 59.582 50.000 0.00 0.00 33.83 4.57
131 132 2.507058 TGAGGAGGTCATGGGATTTCAG 59.493 50.000 0.00 0.00 0.00 3.02
156 157 2.167693 CAGTGTTGCGAGGATAGGGTTA 59.832 50.000 0.00 0.00 0.00 2.85
158 159 0.537188 CAGTGTTGCGAGGATAGGGT 59.463 55.000 0.00 0.00 0.00 4.34
159 160 0.179073 CCAGTGTTGCGAGGATAGGG 60.179 60.000 0.00 0.00 0.00 3.53
163 164 0.036952 CTCACCAGTGTTGCGAGGAT 60.037 55.000 0.00 0.00 0.00 3.24
172 173 3.314331 CGAGGGGCTCACCAGTGT 61.314 66.667 0.00 0.00 42.91 3.55
181 182 4.711949 CAAGTGCTGCGAGGGGCT 62.712 66.667 0.00 0.00 44.05 5.19
182 183 4.704833 TCAAGTGCTGCGAGGGGC 62.705 66.667 0.00 0.00 43.96 5.80
183 184 2.435586 CTCAAGTGCTGCGAGGGG 60.436 66.667 0.00 0.00 0.00 4.79
184 185 2.435586 CCTCAAGTGCTGCGAGGG 60.436 66.667 11.99 0.00 42.27 4.30
186 187 2.015736 ATAACCTCAAGTGCTGCGAG 57.984 50.000 0.00 0.00 0.00 5.03
187 188 2.076100 CAATAACCTCAAGTGCTGCGA 58.924 47.619 0.00 0.00 0.00 5.10
188 189 1.466360 GCAATAACCTCAAGTGCTGCG 60.466 52.381 0.00 0.00 32.43 5.18
189 190 1.135286 GGCAATAACCTCAAGTGCTGC 60.135 52.381 0.00 0.00 35.53 5.25
190 191 1.474077 GGGCAATAACCTCAAGTGCTG 59.526 52.381 0.00 0.00 35.53 4.41
211 212 0.530650 CAAGGGCGTCGTCATGCTAT 60.531 55.000 0.00 0.00 34.60 2.97
212 213 1.153647 CAAGGGCGTCGTCATGCTA 60.154 57.895 0.00 0.00 34.60 3.49
213 214 2.434884 CAAGGGCGTCGTCATGCT 60.435 61.111 0.00 0.00 34.60 3.79
254 255 2.811317 CGAAGTCAGGCGAGGCAC 60.811 66.667 0.00 0.00 0.00 5.01
285 286 3.212685 GGTAGTGCTCGGTACTATGAGT 58.787 50.000 10.51 0.00 33.76 3.41
290 291 1.679680 GCATGGTAGTGCTCGGTACTA 59.320 52.381 0.00 0.00 41.82 1.82
344 345 2.067091 TATAGGTTGGTCGCCGCTCG 62.067 60.000 0.00 0.00 40.15 5.03
345 346 0.103572 TTATAGGTTGGTCGCCGCTC 59.896 55.000 0.00 0.00 0.00 5.03
346 347 0.179092 GTTATAGGTTGGTCGCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
347 348 1.156034 GGTTATAGGTTGGTCGCCGC 61.156 60.000 0.00 0.00 0.00 6.53
348 349 0.531311 GGGTTATAGGTTGGTCGCCG 60.531 60.000 0.00 0.00 0.00 6.46
349 350 0.179037 GGGGTTATAGGTTGGTCGCC 60.179 60.000 0.00 0.00 0.00 5.54
350 351 0.542805 TGGGGTTATAGGTTGGTCGC 59.457 55.000 0.00 0.00 0.00 5.19
351 352 1.474498 GCTGGGGTTATAGGTTGGTCG 60.474 57.143 0.00 0.00 0.00 4.79
384 385 1.691195 TTGGAAGTCCTGTCACCGCA 61.691 55.000 0.00 0.00 36.82 5.69
385 386 0.321653 ATTGGAAGTCCTGTCACCGC 60.322 55.000 0.00 0.00 36.82 5.68
386 387 3.000727 GTTATTGGAAGTCCTGTCACCG 58.999 50.000 0.00 0.00 36.82 4.94
387 388 3.000727 CGTTATTGGAAGTCCTGTCACC 58.999 50.000 0.00 0.00 36.82 4.02
396 397 3.588955 GGTTACGACCGTTATTGGAAGT 58.411 45.455 0.00 0.00 35.91 3.01
408 409 0.393820 TGTTGTCAGGGGTTACGACC 59.606 55.000 0.00 0.00 45.75 4.79
421 422 1.915614 CTCACCATGCCGCTGTTGTC 61.916 60.000 0.00 0.00 0.00 3.18
423 424 2.872557 CTCACCATGCCGCTGTTG 59.127 61.111 0.00 0.00 0.00 3.33
425 426 3.557903 AAGCTCACCATGCCGCTGT 62.558 57.895 0.00 0.00 32.22 4.40
429 430 2.180017 GCAAAGCTCACCATGCCG 59.820 61.111 0.00 0.00 32.73 5.69
433 434 0.957395 CTGTCGGCAAAGCTCACCAT 60.957 55.000 0.00 0.00 0.00 3.55
435 436 1.294659 CTCTGTCGGCAAAGCTCACC 61.295 60.000 0.00 0.00 0.00 4.02
443 444 0.247460 CAGTCATCCTCTGTCGGCAA 59.753 55.000 0.00 0.00 0.00 4.52
451 452 1.566211 CACCACCTCAGTCATCCTCT 58.434 55.000 0.00 0.00 0.00 3.69
465 466 1.296715 CCACACCTCCTAGCACCAC 59.703 63.158 0.00 0.00 0.00 4.16
466 467 1.918293 CCCACACCTCCTAGCACCA 60.918 63.158 0.00 0.00 0.00 4.17
467 468 1.612442 TCCCACACCTCCTAGCACC 60.612 63.158 0.00 0.00 0.00 5.01
468 469 1.617947 CCTCCCACACCTCCTAGCAC 61.618 65.000 0.00 0.00 0.00 4.40
478 479 1.194781 TTCCTGAGAGCCTCCCACAC 61.195 60.000 0.00 0.00 0.00 3.82
493 494 0.824182 CCGACGGGATCTAGCTTCCT 60.824 60.000 5.81 0.00 34.06 3.36
496 497 0.106619 ACTCCGACGGGATCTAGCTT 60.107 55.000 15.25 0.00 42.83 3.74
512 513 0.461961 CACCTGCCTACCTGCTACTC 59.538 60.000 0.00 0.00 0.00 2.59
525 526 0.969917 TCTCTCTCTCTGGCACCTGC 60.970 60.000 0.00 0.00 41.14 4.85
528 529 1.064758 TCTCTCTCTCTCTCTGGCACC 60.065 57.143 0.00 0.00 0.00 5.01
535 536 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
539 540 4.517285 TGCTTTCTCTCTCTCTCTCTCTC 58.483 47.826 0.00 0.00 0.00 3.20
542 543 8.995027 TTATTATGCTTTCTCTCTCTCTCTCT 57.005 34.615 0.00 0.00 0.00 3.10
543 544 9.683069 CTTTATTATGCTTTCTCTCTCTCTCTC 57.317 37.037 0.00 0.00 0.00 3.20
556 557 5.126061 CCAGCCACACTCTTTATTATGCTTT 59.874 40.000 0.00 0.00 0.00 3.51
558 559 4.202441 CCAGCCACACTCTTTATTATGCT 58.798 43.478 0.00 0.00 0.00 3.79
559 560 3.316308 CCCAGCCACACTCTTTATTATGC 59.684 47.826 0.00 0.00 0.00 3.14
560 561 4.780815 TCCCAGCCACACTCTTTATTATG 58.219 43.478 0.00 0.00 0.00 1.90
561 562 4.141390 CCTCCCAGCCACACTCTTTATTAT 60.141 45.833 0.00 0.00 0.00 1.28
562 563 3.199946 CCTCCCAGCCACACTCTTTATTA 59.800 47.826 0.00 0.00 0.00 0.98
563 564 2.025887 CCTCCCAGCCACACTCTTTATT 60.026 50.000 0.00 0.00 0.00 1.40
565 566 0.984230 CCTCCCAGCCACACTCTTTA 59.016 55.000 0.00 0.00 0.00 1.85
566 567 0.768221 TCCTCCCAGCCACACTCTTT 60.768 55.000 0.00 0.00 0.00 2.52
567 568 0.768221 TTCCTCCCAGCCACACTCTT 60.768 55.000 0.00 0.00 0.00 2.85
568 569 1.152030 TTCCTCCCAGCCACACTCT 60.152 57.895 0.00 0.00 0.00 3.24
570 571 0.768221 TTCTTCCTCCCAGCCACACT 60.768 55.000 0.00 0.00 0.00 3.55
572 573 1.492133 CCTTCTTCCTCCCAGCCACA 61.492 60.000 0.00 0.00 0.00 4.17
573 574 1.301293 CCTTCTTCCTCCCAGCCAC 59.699 63.158 0.00 0.00 0.00 5.01
575 576 2.273776 GCCTTCTTCCTCCCAGCC 59.726 66.667 0.00 0.00 0.00 4.85
576 577 1.977293 ATCGCCTTCTTCCTCCCAGC 61.977 60.000 0.00 0.00 0.00 4.85
597 598 7.066766 CCTTATCTTCTTCCTTGAGTGGAAATG 59.933 40.741 0.00 0.00 44.49 2.32
598 599 7.115414 CCTTATCTTCTTCCTTGAGTGGAAAT 58.885 38.462 0.00 0.00 44.49 2.17
605 606 5.112686 CGAACCCTTATCTTCTTCCTTGAG 58.887 45.833 0.00 0.00 0.00 3.02
607 608 4.192317 CCGAACCCTTATCTTCTTCCTTG 58.808 47.826 0.00 0.00 0.00 3.61
616 617 0.464452 CGCTTCCCGAACCCTTATCT 59.536 55.000 0.00 0.00 40.02 1.98
647 648 3.345808 CAACCACGTGACCTGCGG 61.346 66.667 19.30 0.00 0.00 5.69
649 650 2.594962 CGACAACCACGTGACCTGC 61.595 63.158 19.30 2.30 0.00 4.85
679 680 2.826128 ACTGATCCTAGACGTTGCTTCA 59.174 45.455 0.00 0.00 0.00 3.02
705 706 1.544724 TTGGAAAGGCCTCCATTTCG 58.455 50.000 14.20 0.00 45.03 3.46
882 889 0.960364 TTTGGATCTGGGCTGTTCGC 60.960 55.000 0.00 0.00 38.13 4.70
884 891 1.177401 GGTTTGGATCTGGGCTGTTC 58.823 55.000 0.00 0.00 0.00 3.18
885 892 0.251787 GGGTTTGGATCTGGGCTGTT 60.252 55.000 0.00 0.00 0.00 3.16
908 915 4.123545 GATTCGTGGGGGTGGGGG 62.124 72.222 0.00 0.00 0.00 5.40
914 921 2.366972 AGAGGGGATTCGTGGGGG 60.367 66.667 0.00 0.00 0.00 5.40
915 922 2.797278 CGAGAGGGGATTCGTGGGG 61.797 68.421 0.00 0.00 32.44 4.96
916 923 2.815308 CGAGAGGGGATTCGTGGG 59.185 66.667 0.00 0.00 32.44 4.61
988 995 1.367599 GACCTCATCGTCGTCCTCGT 61.368 60.000 0.00 0.00 38.33 4.18
1101 1108 4.144727 GGGAGCGGGAGGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
1182 1192 2.755876 ATCTCCGTGGAGCTCGCA 60.756 61.111 11.17 4.12 41.71 5.10
1269 1291 2.686572 GGGCCCTACATCCGGGTTT 61.687 63.158 17.04 0.00 43.92 3.27
1323 1345 3.400054 GAGTGGCGCTTAGGGGGT 61.400 66.667 7.64 0.00 0.00 4.95
1324 1346 4.530857 CGAGTGGCGCTTAGGGGG 62.531 72.222 7.64 0.00 0.00 5.40
1342 1364 3.620187 CTCGCTGAGCAACGCAACG 62.620 63.158 4.88 0.00 0.00 4.10
1343 1365 2.171940 CTCGCTGAGCAACGCAAC 59.828 61.111 4.88 0.00 0.00 4.17
1344 1366 3.043713 CCTCGCTGAGCAACGCAA 61.044 61.111 4.88 0.00 0.00 4.85
1347 1369 4.749310 AGGCCTCGCTGAGCAACG 62.749 66.667 0.00 0.00 0.00 4.10
1348 1370 3.123620 CAGGCCTCGCTGAGCAAC 61.124 66.667 0.00 0.00 0.00 4.17
1356 1378 4.416738 AAAGAGGGCAGGCCTCGC 62.417 66.667 31.96 14.79 39.11 5.03
1357 1379 2.437359 CAAAGAGGGCAGGCCTCG 60.437 66.667 31.96 17.77 39.11 4.63
1358 1380 1.377856 GACAAAGAGGGCAGGCCTC 60.378 63.158 31.76 31.76 36.10 4.70
1359 1381 2.759795 GACAAAGAGGGCAGGCCT 59.240 61.111 17.36 17.36 36.10 5.19
1360 1382 2.747855 CGACAAAGAGGGCAGGCC 60.748 66.667 4.33 4.33 0.00 5.19
1361 1383 3.435186 GCGACAAAGAGGGCAGGC 61.435 66.667 0.00 0.00 0.00 4.85
1362 1384 2.747855 GGCGACAAAGAGGGCAGG 60.748 66.667 0.00 0.00 0.00 4.85
1366 1388 3.330720 AGGGGGCGACAAAGAGGG 61.331 66.667 0.00 0.00 0.00 4.30
1384 1406 4.400961 AGCACGGCTTCAGAGGCC 62.401 66.667 13.75 13.75 45.16 5.19
1385 1407 2.817396 GAGCACGGCTTCAGAGGC 60.817 66.667 0.00 0.00 39.88 4.70
1387 1409 1.088340 CCATGAGCACGGCTTCAGAG 61.088 60.000 0.00 0.00 39.88 3.35
1390 1412 1.078918 CTCCATGAGCACGGCTTCA 60.079 57.895 0.00 1.42 39.88 3.02
1391 1413 0.391661 TTCTCCATGAGCACGGCTTC 60.392 55.000 0.00 0.00 39.88 3.86
1399 1421 2.425143 TGACCCATTTCTCCATGAGC 57.575 50.000 0.00 0.00 0.00 4.26
1402 1424 3.022557 ACCATGACCCATTTCTCCATG 57.977 47.619 0.00 0.00 35.61 3.66
1415 1440 4.579454 TCGCACTAATACCTACCATGAC 57.421 45.455 0.00 0.00 0.00 3.06
1417 1442 3.741344 GCTTCGCACTAATACCTACCATG 59.259 47.826 0.00 0.00 0.00 3.66
1418 1443 3.641906 AGCTTCGCACTAATACCTACCAT 59.358 43.478 0.00 0.00 0.00 3.55
1433 1458 5.220098 GCTGAAAACATGATAAAAGCTTCGC 60.220 40.000 0.00 0.00 0.00 4.70
1464 1489 1.654775 GCAGCGCGAAATAAGATCACG 60.655 52.381 12.10 0.00 0.00 4.35
1467 1492 2.957576 ATGCAGCGCGAAATAAGATC 57.042 45.000 12.10 0.00 0.00 2.75
1479 1504 3.515630 TCTTCTCTACTCAAATGCAGCG 58.484 45.455 0.00 0.00 0.00 5.18
1493 1518 1.984424 AGCCAGCTTTTCCTCTTCTCT 59.016 47.619 0.00 0.00 0.00 3.10
1537 1563 0.243907 TAACTCTCGCTGGCACACTC 59.756 55.000 0.00 0.00 0.00 3.51
1587 1629 1.971167 GAGGCGCCAACCATGAACA 60.971 57.895 31.54 0.00 0.00 3.18
1596 1638 0.539438 AAAATCCAGTGAGGCGCCAA 60.539 50.000 31.54 14.36 37.29 4.52
1683 1725 6.770303 TGATCTGGTAAACAAACTCAACATGA 59.230 34.615 0.00 0.00 0.00 3.07
1684 1726 6.969366 TGATCTGGTAAACAAACTCAACATG 58.031 36.000 0.00 0.00 0.00 3.21
1707 1749 5.474876 AGATCCCAAACAAAAAGAGTAGCTG 59.525 40.000 0.00 0.00 0.00 4.24
1833 1876 4.851843 TGAATCAGAGGACAGATTTGCAT 58.148 39.130 0.00 0.00 33.53 3.96
1957 2000 1.400846 TCTGATAGACGGTCGACAAGC 59.599 52.381 18.91 5.27 0.00 4.01
1963 2006 3.142951 AGGAGATTCTGATAGACGGTCG 58.857 50.000 1.89 0.00 0.00 4.79
2217 2261 7.482113 CGTATGTATGGAGTTCTAGCGATAAAG 59.518 40.741 0.00 0.00 0.00 1.85
2487 2531 8.339714 TGTTTAACATAGTAGTTTGCACAGAAC 58.660 33.333 0.00 0.00 33.07 3.01
2492 2536 7.114388 GGCTTTGTTTAACATAGTAGTTTGCAC 59.886 37.037 14.90 0.00 31.16 4.57
3204 3248 3.872696 TGCAACTTCACGTCCATCATAT 58.127 40.909 0.00 0.00 0.00 1.78
3670 3723 8.855110 ACTGTTCCATGTGTTCATGTAAAATAA 58.145 29.630 7.30 0.00 46.99 1.40
3813 3866 4.591321 TCAAGCTGGACCATATTCCTTT 57.409 40.909 0.00 0.00 36.51 3.11
3895 3948 5.725362 AGAGCCATAACAGAAAGTACACTC 58.275 41.667 0.00 0.00 0.00 3.51
3954 4942 7.708752 GCTCTGTTCATCTAACTAGTTAGCAAT 59.291 37.037 30.09 19.85 41.63 3.56
3971 4959 5.252547 TGTAGCCAATTTATGCTCTGTTCA 58.747 37.500 0.00 0.00 39.00 3.18
4257 5285 2.542020 TGAGCCGTGTGATTCAAAGA 57.458 45.000 0.00 0.00 0.00 2.52
4371 5400 2.309528 TATGCCTCACATGTTCGACC 57.690 50.000 0.00 0.00 40.06 4.79
4490 5519 8.983702 ACCAAGTTTGTAGAAAAATACTACCA 57.016 30.769 0.00 0.00 39.30 3.25
4521 5550 6.265196 TCTTGCCACAAGTCAAACAAGATAAT 59.735 34.615 7.18 0.00 38.76 1.28
4527 5557 4.734398 AATCTTGCCACAAGTCAAACAA 57.266 36.364 7.18 0.00 0.00 2.83
4528 5558 4.081752 ACAAATCTTGCCACAAGTCAAACA 60.082 37.500 7.18 0.00 0.00 2.83
4653 5691 6.617782 AGATTGCAGCTAGTGGTGATATAT 57.382 37.500 0.00 0.00 43.76 0.86
4766 5804 3.378512 AGACAGGAGCAATCATACAGGA 58.621 45.455 0.00 0.00 0.00 3.86
4864 5902 6.586463 CGCGATGTATGATTCCTAAACTATGT 59.414 38.462 0.00 0.00 0.00 2.29
4999 6037 0.813184 CTTGCTTACCAGTGCCATGG 59.187 55.000 7.63 7.63 46.47 3.66
5094 6132 2.746142 CGGAGCTTCCATATCCTGCAAA 60.746 50.000 0.00 0.00 35.91 3.68
5339 6377 7.733773 TGACCTAAATTCTTACCTCTCATCA 57.266 36.000 0.00 0.00 0.00 3.07
5641 6679 5.623956 ATTTCCTATAACGACCCACATCA 57.376 39.130 0.00 0.00 0.00 3.07
5778 6816 6.828273 AGCCATACACATAGCATAAACAAGAA 59.172 34.615 0.00 0.00 0.00 2.52
5881 6921 4.263639 CCATGGTATGGTGCAAGGATCTAT 60.264 45.833 2.57 0.00 45.54 1.98
5885 6925 2.369983 CCATGGTATGGTGCAAGGAT 57.630 50.000 2.57 0.00 45.54 3.24
5931 6986 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5932 6987 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5933 6988 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5934 6989 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
5951 7006 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
5952 7007 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5956 7011 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
5957 7012 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5958 7013 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5959 7014 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5960 7015 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5961 7016 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5962 7017 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
5963 7018 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
5964 7019 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
5965 7020 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
5966 7021 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
5967 7022 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
5968 7023 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
5969 7024 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
5970 7025 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
5971 7026 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
5972 7027 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
5973 7028 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
5974 7029 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
5975 7030 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
5976 7031 7.279536 CGTCTATATACATCCGTATGTGGTAGT 59.720 40.741 3.56 0.00 45.99 2.73
5977 7032 7.279536 ACGTCTATATACATCCGTATGTGGTAG 59.720 40.741 3.56 3.93 45.99 3.18
5978 7033 7.105588 ACGTCTATATACATCCGTATGTGGTA 58.894 38.462 3.56 0.00 45.99 3.25
5979 7034 5.942236 ACGTCTATATACATCCGTATGTGGT 59.058 40.000 3.56 0.00 45.99 4.16
5980 7035 6.432607 ACGTCTATATACATCCGTATGTGG 57.567 41.667 3.56 0.00 45.99 4.17
5981 7036 8.194433 AGTACGTCTATATACATCCGTATGTG 57.806 38.462 3.56 0.00 45.99 3.21
5986 7041 9.149225 CTCTAAAGTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
5987 7042 9.149225 ACTCTAAAGTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 32.59 4.18
5996 7051 9.610705 TGAATCTACACTCTAAAGTACGTCTAT 57.389 33.333 0.00 0.00 33.25 1.98
5997 7052 8.877779 GTGAATCTACACTCTAAAGTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
5998 7053 7.607223 AGTGAATCTACACTCTAAAGTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
5999 7054 7.750769 AGTGAATCTACACTCTAAAGTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
6000 7055 7.684937 AGTGAATCTACACTCTAAAGTACGT 57.315 36.000 0.00 0.00 46.36 3.57
6012 7067 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6013 7068 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6014 7069 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6015 7070 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6016 7071 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6017 7072 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6018 7073 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6019 7074 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6020 7075 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6021 7076 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6022 7077 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6023 7078 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
6024 7079 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
6025 7080 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
6026 7081 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
6027 7082 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
6028 7083 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
6029 7084 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
6030 7085 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
6031 7086 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
6032 7087 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
6033 7088 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
6034 7089 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
6035 7090 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
6039 7094 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
6042 7097 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
6043 7098 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
6044 7099 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
6059 7114 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6060 7115 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6061 7116 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6062 7117 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6063 7118 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6064 7119 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6065 7120 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6066 7121 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6067 7122 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6068 7123 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6069 7124 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6070 7125 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6071 7126 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
6072 7127 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
6073 7128 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
6074 7129 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
6075 7130 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6076 7131 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
6077 7132 5.595814 ATTATCTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
6078 7133 3.967467 TTATCTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
6079 7134 4.344390 ACAATTATCTACTCCCTCCGTTCC 59.656 45.833 0.00 0.00 0.00 3.62
6080 7135 5.532664 ACAATTATCTACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
6081 7136 5.952347 AACAATTATCTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
6082 7137 5.189145 ACAAACAATTATCTACTCCCTCCGT 59.811 40.000 0.00 0.00 0.00 4.69
6083 7138 5.671493 ACAAACAATTATCTACTCCCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
6084 7139 7.878644 GGATACAAACAATTATCTACTCCCTCC 59.121 40.741 0.00 0.00 0.00 4.30
6085 7140 8.652290 AGGATACAAACAATTATCTACTCCCTC 58.348 37.037 0.00 0.00 41.41 4.30
6086 7141 8.568617 AGGATACAAACAATTATCTACTCCCT 57.431 34.615 0.00 0.00 41.41 4.20
6087 7142 9.274206 GAAGGATACAAACAATTATCTACTCCC 57.726 37.037 0.00 0.00 41.41 4.30
6088 7143 9.832445 TGAAGGATACAAACAATTATCTACTCC 57.168 33.333 0.00 0.00 41.41 3.85
6191 7256 8.350852 TCTTTTTGGACTGGTTTTGTAACTTA 57.649 30.769 0.00 0.00 34.59 2.24
6230 7295 1.118356 TTGGACCCAAAAAGCCGCAT 61.118 50.000 0.00 0.00 32.44 4.73
6308 7373 2.168106 CAGAGACAGTGAATGGGGAGAG 59.832 54.545 0.00 0.00 0.00 3.20
6454 7519 1.129998 CAGCAACTTCAGCGAATCCTG 59.870 52.381 0.00 0.00 37.01 3.86
6600 7665 8.812329 TGTAACTGATTGTGTTTAAAATGCAAC 58.188 29.630 0.00 0.00 0.00 4.17
6641 7709 2.254546 TTAGGTTGTCAGTGCACCTG 57.745 50.000 14.63 11.39 42.97 4.00
6711 7783 5.880901 TCTTTGGGTTATCTTCTCTTGCTT 58.119 37.500 0.00 0.00 0.00 3.91
6803 7875 1.903404 GTGTGCCTGTTTGGAGGGG 60.903 63.158 0.00 0.00 38.35 4.79
6836 7908 0.615331 CTAGGGTGGACATGTGCTGT 59.385 55.000 18.75 3.08 42.15 4.40
7115 8187 2.775384 AGGAAAATATGCGACCACCCTA 59.225 45.455 0.00 0.00 0.00 3.53
7122 8194 8.559536 TGAAATAGATCAAGGAAAATATGCGAC 58.440 33.333 0.00 0.00 0.00 5.19
7156 8228 2.551270 ACCACTGAAAGGATAGAGCCA 58.449 47.619 0.00 0.00 39.30 4.75
7235 8307 0.620030 ATGCACATACACCTCAGCCA 59.380 50.000 0.00 0.00 0.00 4.75
7349 8423 5.428253 CCCTTAATTCGTCTCCATTCTTCA 58.572 41.667 0.00 0.00 0.00 3.02
7374 8448 0.247460 CACTCAGTCGCCATCCTTGA 59.753 55.000 0.00 0.00 0.00 3.02
7682 8801 1.148273 GGTGTGACAAGGCTCCACA 59.852 57.895 11.60 11.60 38.34 4.17
7705 8824 2.388121 CTGCGAAACAAAGAGGCTTTG 58.612 47.619 16.02 16.02 35.64 2.77
7741 8860 6.430864 TCCAATCCTATGTTTTGCCTATTCA 58.569 36.000 0.00 0.00 0.00 2.57
7931 9050 7.338710 TCTAATCAGTAGGATTGTTTTCCCTG 58.661 38.462 0.00 0.00 45.70 4.45
7935 9054 9.620259 AGGATTCTAATCAGTAGGATTGTTTTC 57.380 33.333 5.15 0.00 45.70 2.29
8056 9178 3.443037 TCAAACAACCAGCAACGAAATG 58.557 40.909 0.00 0.00 0.00 2.32
8061 9183 2.794350 GGAAATCAAACAACCAGCAACG 59.206 45.455 0.00 0.00 0.00 4.10
8101 9226 7.095355 ACGGATCAAACAAACTAGTAACATGAC 60.095 37.037 0.00 0.00 0.00 3.06
8106 9231 7.092716 TCCTACGGATCAAACAAACTAGTAAC 58.907 38.462 0.00 0.00 0.00 2.50
8195 9321 4.274705 TGTTGTTAGTGCTGTGGTACATTG 59.725 41.667 0.00 0.00 44.52 2.82
8262 9388 5.012893 AGGGTCATTTCACAGAATTTCCTC 58.987 41.667 0.00 0.00 0.00 3.71
8378 9504 5.416952 CCATAACAAGCATTATCCATCCCTC 59.583 44.000 0.00 0.00 0.00 4.30
8417 9543 1.279271 GGAGGAAACAAGGCTGAGCTA 59.721 52.381 3.72 0.00 0.00 3.32
8461 9589 5.222631 ACTCCTGAAAATTGATGAAAACGC 58.777 37.500 0.00 0.00 0.00 4.84
8501 9629 6.055588 TGAGAAATAACGATCAAATCCCTCC 58.944 40.000 0.00 0.00 0.00 4.30
8537 9665 3.748048 TGTACACTTCAATCAGCAGCTTC 59.252 43.478 0.00 0.00 0.00 3.86
8630 9758 4.472833 AGTAGAGGGATGACATCTGCTTTT 59.527 41.667 14.95 0.37 32.94 2.27
8661 9789 5.355350 GCTAGGTGAAGATTTGTTAGTGCAT 59.645 40.000 0.00 0.00 0.00 3.96
8662 9790 4.695455 GCTAGGTGAAGATTTGTTAGTGCA 59.305 41.667 0.00 0.00 0.00 4.57
8663 9791 4.695455 TGCTAGGTGAAGATTTGTTAGTGC 59.305 41.667 0.00 0.00 0.00 4.40
8664 9792 6.801539 TTGCTAGGTGAAGATTTGTTAGTG 57.198 37.500 0.00 0.00 0.00 2.74
8665 9793 7.817418 TTTTGCTAGGTGAAGATTTGTTAGT 57.183 32.000 0.00 0.00 0.00 2.24
8836 9966 8.439286 GTTGCGAGATATTCTGAAAATCTATCC 58.561 37.037 0.00 0.00 30.19 2.59
8840 9970 7.798596 ATGTTGCGAGATATTCTGAAAATCT 57.201 32.000 0.00 0.00 32.70 2.40
8860 9990 9.533831 AGTTTCCCTCATAAAACTCAATATGTT 57.466 29.630 0.00 0.00 40.74 2.71
8892 10022 4.699257 AGCAGATTGACTCAAAGCTTAAGG 59.301 41.667 0.00 0.00 30.25 2.69
8924 10054 1.177401 GTTCCTGGAGGCAAATGACC 58.823 55.000 0.00 0.00 34.44 4.02
8928 10058 2.621668 GCTTAGGTTCCTGGAGGCAAAT 60.622 50.000 0.00 0.00 34.44 2.32
8953 10083 7.404671 TTGCTTTGAAAGTAGAAATATCCCC 57.595 36.000 6.81 0.00 0.00 4.81
8954 10084 8.907885 AGATTGCTTTGAAAGTAGAAATATCCC 58.092 33.333 6.81 0.00 0.00 3.85
8981 10111 5.941555 TCTAGAGCCTAAAGGAAGGAAAG 57.058 43.478 0.00 0.00 39.15 2.62
8996 10126 5.762711 GGAAGAAAATGGAAGGATCTAGAGC 59.237 44.000 0.00 0.00 0.00 4.09
9065 10195 1.067516 CTTTGGTGCACTCCAAGGTTG 59.932 52.381 17.98 2.16 46.27 3.77
9067 10197 3.116091 CTTTGGTGCACTCCAAGGT 57.884 52.632 17.98 0.00 46.27 3.50
9093 10223 0.254178 AGGTGATGGCAAAGCGATCT 59.746 50.000 13.68 0.00 42.71 2.75
9160 10292 1.213182 TGGTCGCAAGGGCCATAATAA 59.787 47.619 6.18 0.00 37.74 1.40
9164 10296 2.270850 GTGGTCGCAAGGGCCATA 59.729 61.111 6.18 0.00 42.67 2.74
9215 10347 7.442364 CGGGCAATTAATAAGATTTGAGAGAGA 59.558 37.037 0.00 0.00 0.00 3.10
9259 10391 7.777910 TCAGAGGGTCTCAAAACAAGATTAAAA 59.222 33.333 0.00 0.00 32.06 1.52
9269 10401 4.821805 TGATTTGTCAGAGGGTCTCAAAAC 59.178 41.667 0.00 0.00 32.99 2.43
9271 10403 4.705110 TGATTTGTCAGAGGGTCTCAAA 57.295 40.909 0.00 0.00 32.06 2.69
9293 10425 3.997681 TCATTACCGCTGAAATTTGACGA 59.002 39.130 0.00 0.00 0.00 4.20
9306 10438 2.734276 TTTTTGGGCTTCATTACCGC 57.266 45.000 0.00 0.00 0.00 5.68
9309 10441 6.758416 GGATGAGAATTTTTGGGCTTCATTAC 59.242 38.462 0.00 0.00 0.00 1.89
9366 10502 4.844884 ACCAAGTAAAGAGCCTATCCAAC 58.155 43.478 0.00 0.00 0.00 3.77
9371 10507 7.676683 TGATTAGACCAAGTAAAGAGCCTAT 57.323 36.000 0.00 0.00 0.00 2.57
9430 10566 9.231297 CAAGGTCCAATCTAAATTAACAGAAGA 57.769 33.333 0.00 0.00 0.00 2.87
9434 10570 8.960591 ACATCAAGGTCCAATCTAAATTAACAG 58.039 33.333 0.00 0.00 0.00 3.16
9489 10657 1.807886 GTGATCGGAGGTAGTGCGT 59.192 57.895 0.00 0.00 41.56 5.24
9491 10659 0.172803 AACGTGATCGGAGGTAGTGC 59.827 55.000 0.00 0.00 41.85 4.40
9504 10672 4.250464 CTGCCAGTAAAATAGGAACGTGA 58.750 43.478 0.00 0.00 0.00 4.35
9522 10690 1.383523 GAATAGTTGTGGAGGCTGCC 58.616 55.000 11.65 11.65 0.00 4.85
9524 10692 1.281867 TGGGAATAGTTGTGGAGGCTG 59.718 52.381 0.00 0.00 0.00 4.85
9534 10702 4.337264 AATCAAGGGCTTGGGAATAGTT 57.663 40.909 0.00 0.00 40.78 2.24
9536 10704 4.100035 GGAAAATCAAGGGCTTGGGAATAG 59.900 45.833 0.00 0.00 40.78 1.73
9551 10719 3.320541 ACAATTGTTGAGCCGGAAAATCA 59.679 39.130 5.05 0.00 0.00 2.57
9559 10727 1.788308 CAGCAAACAATTGTTGAGCCG 59.212 47.619 30.14 22.60 46.99 5.52
9586 10754 2.417933 CGATTTGCTGAAGGAAGGACTG 59.582 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.