Multiple sequence alignment - TraesCS6B01G412200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G412200 chr6B 100.000 6160 0 0 1 6160 685664611 685670770 0.000000e+00 11376.0
1 TraesCS6B01G412200 chr6B 94.286 140 6 2 2536 2675 623745877 623746014 4.840000e-51 213.0
2 TraesCS6B01G412200 chr6A 93.571 2240 90 22 3945 6160 597291471 597293680 0.000000e+00 3290.0
3 TraesCS6B01G412200 chr6A 94.701 1755 78 8 801 2547 597288473 597290220 0.000000e+00 2712.0
4 TraesCS6B01G412200 chr6A 94.601 1315 58 5 2670 3973 597290218 597291530 0.000000e+00 2023.0
5 TraesCS6B01G412200 chr6A 85.468 695 81 9 115 791 597287798 597288490 0.000000e+00 706.0
6 TraesCS6B01G412200 chr6D 92.765 1631 96 18 804 2426 451658447 451656831 0.000000e+00 2338.0
7 TraesCS6B01G412200 chr6D 90.930 1334 71 18 4203 5510 451655132 451653823 0.000000e+00 1748.0
8 TraesCS6B01G412200 chr6D 84.855 1314 110 45 2670 3946 451656642 451655381 0.000000e+00 1242.0
9 TraesCS6B01G412200 chr6D 92.487 559 19 12 5619 6160 451653778 451653226 0.000000e+00 778.0
10 TraesCS6B01G412200 chr6D 80.655 336 28 21 472 792 451658745 451658432 6.210000e-55 226.0
11 TraesCS6B01G412200 chr6D 88.235 119 5 5 2437 2547 451656757 451656640 3.870000e-27 134.0
12 TraesCS6B01G412200 chr6D 87.778 90 10 1 1 89 373278081 373278170 3.040000e-18 104.0
13 TraesCS6B01G412200 chr2A 99.231 130 1 0 2545 2674 767942981 767943110 1.030000e-57 235.0
14 TraesCS6B01G412200 chr2A 95.588 136 5 1 2546 2681 20004780 20004646 3.740000e-52 217.0
15 TraesCS6B01G412200 chr7A 96.923 130 4 0 2543 2672 158665225 158665096 1.040000e-52 219.0
16 TraesCS6B01G412200 chr7A 93.750 144 9 0 2538 2681 380530971 380531114 3.740000e-52 217.0
17 TraesCS6B01G412200 chr3B 96.241 133 5 0 2544 2676 45520879 45520747 1.040000e-52 219.0
18 TraesCS6B01G412200 chr4B 95.556 135 6 0 2540 2674 294107707 294107573 3.740000e-52 217.0
19 TraesCS6B01G412200 chr4B 94.891 137 7 0 2545 2681 210282885 210282749 1.340000e-51 215.0
20 TraesCS6B01G412200 chr5A 93.706 143 8 1 2535 2676 421833448 421833306 4.840000e-51 213.0
21 TraesCS6B01G412200 chr1B 88.889 63 7 0 2 64 223793865 223793927 1.840000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G412200 chr6B 685664611 685670770 6159 False 11376.000000 11376 100.000000 1 6160 1 chr6B.!!$F2 6159
1 TraesCS6B01G412200 chr6A 597287798 597293680 5882 False 2182.750000 3290 92.085250 115 6160 4 chr6A.!!$F1 6045
2 TraesCS6B01G412200 chr6D 451653226 451658745 5519 True 1077.666667 2338 88.321167 472 6160 6 chr6D.!!$R1 5688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 676 0.034896 GCGAGGGACAAAGGAAGTGA 59.965 55.0 0.00 0.0 0.00 3.41 F
890 925 0.042448 GTATTCGCCGTTTCCGCATC 60.042 55.0 0.00 0.0 0.00 3.91 F
1915 1952 0.032130 TCGACACAGTGGCAGACTTC 59.968 55.0 7.33 0.0 29.75 3.01 F
2766 2880 0.237235 TGCTCGAAACAAATGGACGC 59.763 50.0 0.00 0.0 0.00 5.19 F
3894 4039 0.105408 CAAAATGCTATGCCCAGCCC 59.895 55.0 4.36 0.0 41.04 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 1952 0.036294 GACGTCCCCTTCTTGGAAGG 60.036 60.000 16.79 16.79 35.92 3.46 R
2405 2446 1.066143 TCTTCTGGCAAACCCGATCTC 60.066 52.381 0.00 0.00 35.87 2.75 R
3883 4028 1.133513 CCATTAAGTGGGCTGGGCATA 60.134 52.381 0.00 0.00 44.79 3.14 R
4507 4714 1.334059 CGTTCGTGAAGCAAAGCACAT 60.334 47.619 0.00 0.00 34.78 3.21 R
5604 5842 0.393448 AGCACAACCATTGCATTGCA 59.607 45.000 7.38 7.38 42.83 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.513906 TTTGTCACTCTTCATATCAAATTACCA 57.486 29.630 0.00 0.00 0.00 3.25
31 32 8.722480 TGTCACTCTTCATATCAAATTACCAG 57.278 34.615 0.00 0.00 0.00 4.00
32 33 7.280876 TGTCACTCTTCATATCAAATTACCAGC 59.719 37.037 0.00 0.00 0.00 4.85
33 34 7.280876 GTCACTCTTCATATCAAATTACCAGCA 59.719 37.037 0.00 0.00 0.00 4.41
34 35 7.828717 TCACTCTTCATATCAAATTACCAGCAA 59.171 33.333 0.00 0.00 0.00 3.91
35 36 8.461222 CACTCTTCATATCAAATTACCAGCAAA 58.539 33.333 0.00 0.00 0.00 3.68
36 37 9.193806 ACTCTTCATATCAAATTACCAGCAAAT 57.806 29.630 0.00 0.00 0.00 2.32
37 38 9.459640 CTCTTCATATCAAATTACCAGCAAATG 57.540 33.333 0.00 0.00 0.00 2.32
50 51 2.877043 GCAAATGGCTGATGTTAGGG 57.123 50.000 0.00 0.00 40.25 3.53
51 52 1.410153 GCAAATGGCTGATGTTAGGGG 59.590 52.381 0.00 0.00 40.25 4.79
52 53 2.034124 CAAATGGCTGATGTTAGGGGG 58.966 52.381 0.00 0.00 0.00 5.40
72 73 3.293379 AGGGCCCCTACCTGTCCT 61.293 66.667 21.43 0.00 36.85 3.85
73 74 2.286197 GGGCCCCTACCTGTCCTT 60.286 66.667 12.23 0.00 0.00 3.36
74 75 2.376165 GGGCCCCTACCTGTCCTTC 61.376 68.421 12.23 0.00 0.00 3.46
75 76 1.307084 GGCCCCTACCTGTCCTTCT 60.307 63.158 0.00 0.00 0.00 2.85
76 77 0.914902 GGCCCCTACCTGTCCTTCTT 60.915 60.000 0.00 0.00 0.00 2.52
77 78 0.253327 GCCCCTACCTGTCCTTCTTG 59.747 60.000 0.00 0.00 0.00 3.02
78 79 1.657804 CCCCTACCTGTCCTTCTTGT 58.342 55.000 0.00 0.00 0.00 3.16
79 80 1.555533 CCCCTACCTGTCCTTCTTGTC 59.444 57.143 0.00 0.00 0.00 3.18
80 81 2.541466 CCCTACCTGTCCTTCTTGTCT 58.459 52.381 0.00 0.00 0.00 3.41
81 82 2.498078 CCCTACCTGTCCTTCTTGTCTC 59.502 54.545 0.00 0.00 0.00 3.36
82 83 2.498078 CCTACCTGTCCTTCTTGTCTCC 59.502 54.545 0.00 0.00 0.00 3.71
83 84 0.969894 ACCTGTCCTTCTTGTCTCCG 59.030 55.000 0.00 0.00 0.00 4.63
84 85 0.390472 CCTGTCCTTCTTGTCTCCGC 60.390 60.000 0.00 0.00 0.00 5.54
85 86 0.390472 CTGTCCTTCTTGTCTCCGCC 60.390 60.000 0.00 0.00 0.00 6.13
86 87 1.118965 TGTCCTTCTTGTCTCCGCCA 61.119 55.000 0.00 0.00 0.00 5.69
87 88 0.670854 GTCCTTCTTGTCTCCGCCAC 60.671 60.000 0.00 0.00 0.00 5.01
88 89 0.832135 TCCTTCTTGTCTCCGCCACT 60.832 55.000 0.00 0.00 0.00 4.00
89 90 0.895530 CCTTCTTGTCTCCGCCACTA 59.104 55.000 0.00 0.00 0.00 2.74
90 91 1.275291 CCTTCTTGTCTCCGCCACTAA 59.725 52.381 0.00 0.00 0.00 2.24
91 92 2.338500 CTTCTTGTCTCCGCCACTAAC 58.662 52.381 0.00 0.00 0.00 2.34
92 93 0.242825 TCTTGTCTCCGCCACTAACG 59.757 55.000 0.00 0.00 0.00 3.18
93 94 1.352156 CTTGTCTCCGCCACTAACGC 61.352 60.000 0.00 0.00 0.00 4.84
94 95 1.812686 TTGTCTCCGCCACTAACGCT 61.813 55.000 0.00 0.00 0.00 5.07
95 96 0.961857 TGTCTCCGCCACTAACGCTA 60.962 55.000 0.00 0.00 0.00 4.26
96 97 0.525029 GTCTCCGCCACTAACGCTAC 60.525 60.000 0.00 0.00 0.00 3.58
97 98 1.226888 CTCCGCCACTAACGCTACC 60.227 63.158 0.00 0.00 0.00 3.18
98 99 2.202837 CCGCCACTAACGCTACCC 60.203 66.667 0.00 0.00 0.00 3.69
99 100 2.202837 CGCCACTAACGCTACCCC 60.203 66.667 0.00 0.00 0.00 4.95
100 101 2.983791 GCCACTAACGCTACCCCA 59.016 61.111 0.00 0.00 0.00 4.96
101 102 1.449070 GCCACTAACGCTACCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
102 103 1.153706 CCACTAACGCTACCCCACG 60.154 63.158 0.00 0.00 0.00 4.94
103 104 1.588082 CACTAACGCTACCCCACGT 59.412 57.895 0.00 0.00 46.07 4.49
104 105 0.734942 CACTAACGCTACCCCACGTG 60.735 60.000 9.08 9.08 42.68 4.49
105 106 0.895100 ACTAACGCTACCCCACGTGA 60.895 55.000 19.30 0.00 42.68 4.35
106 107 0.458669 CTAACGCTACCCCACGTGAT 59.541 55.000 19.30 4.54 42.68 3.06
107 108 0.896923 TAACGCTACCCCACGTGATT 59.103 50.000 19.30 2.71 42.68 2.57
108 109 0.035739 AACGCTACCCCACGTGATTT 59.964 50.000 19.30 2.31 42.68 2.17
109 110 0.390735 ACGCTACCCCACGTGATTTC 60.391 55.000 19.30 0.00 41.76 2.17
110 111 1.418342 CGCTACCCCACGTGATTTCG 61.418 60.000 19.30 8.67 0.00 3.46
111 112 1.702491 GCTACCCCACGTGATTTCGC 61.702 60.000 19.30 10.10 0.00 4.70
112 113 0.108329 CTACCCCACGTGATTTCGCT 60.108 55.000 19.30 0.00 0.00 4.93
113 114 0.322322 TACCCCACGTGATTTCGCTT 59.678 50.000 19.30 0.00 0.00 4.68
124 125 1.134946 GATTTCGCTTGGGGTTCATGG 59.865 52.381 0.00 0.00 0.00 3.66
137 138 3.986006 CATGGCGCATGGGATGGC 61.986 66.667 14.90 0.00 38.11 4.40
138 139 4.526348 ATGGCGCATGGGATGGCA 62.526 61.111 14.90 0.00 42.64 4.92
161 162 4.154347 CCTGAGGCTGGCTCGTCC 62.154 72.222 23.82 3.85 0.00 4.79
162 163 3.385384 CTGAGGCTGGCTCGTCCA 61.385 66.667 23.82 8.27 44.18 4.02
163 164 3.655810 CTGAGGCTGGCTCGTCCAC 62.656 68.421 23.82 2.77 40.72 4.02
180 183 4.344865 CCCGTGGTTGTCCCCCTG 62.345 72.222 0.00 0.00 0.00 4.45
189 192 4.382320 GTCCCCCTGCGTGCGTTA 62.382 66.667 0.00 0.00 0.00 3.18
191 194 2.437716 CCCCCTGCGTGCGTTATT 60.438 61.111 0.00 0.00 0.00 1.40
194 197 0.455972 CCCCTGCGTGCGTTATTTTG 60.456 55.000 0.00 0.00 0.00 2.44
195 198 0.239879 CCCTGCGTGCGTTATTTTGT 59.760 50.000 0.00 0.00 0.00 2.83
196 199 1.602191 CCTGCGTGCGTTATTTTGTC 58.398 50.000 0.00 0.00 0.00 3.18
197 200 1.602191 CTGCGTGCGTTATTTTGTCC 58.398 50.000 0.00 0.00 0.00 4.02
198 201 0.110599 TGCGTGCGTTATTTTGTCCG 60.111 50.000 0.00 0.00 0.00 4.79
223 228 1.024579 GTCGGGCAATGTCGGTCATT 61.025 55.000 0.00 0.00 46.32 2.57
234 239 2.224185 TGTCGGTCATTGTGCTAGTTGT 60.224 45.455 0.00 0.00 0.00 3.32
237 242 2.683968 GGTCATTGTGCTAGTTGTCGA 58.316 47.619 0.00 0.00 0.00 4.20
244 249 0.317160 TGCTAGTTGTCGAGTGTGGG 59.683 55.000 0.00 0.00 0.00 4.61
248 253 3.164977 TTGTCGAGTGTGGGCCCA 61.165 61.111 24.45 24.45 0.00 5.36
256 261 0.251341 AGTGTGGGCCCAAGTGATTC 60.251 55.000 30.64 13.36 0.00 2.52
260 265 1.075601 TGGGCCCAAGTGATTCTCTT 58.924 50.000 26.33 0.00 0.00 2.85
266 271 2.821969 CCCAAGTGATTCTCTTTGGGTG 59.178 50.000 17.88 2.84 33.17 4.61
267 272 2.821969 CCAAGTGATTCTCTTTGGGTGG 59.178 50.000 0.00 0.00 0.00 4.61
275 280 2.067932 CTCTTTGGGTGGTGGGCTGA 62.068 60.000 0.00 0.00 0.00 4.26
321 338 0.323957 GCTGGTCTCGTTAAAGGGGT 59.676 55.000 0.00 0.00 0.00 4.95
329 346 2.745821 CTCGTTAAAGGGGTTTGCCTAC 59.254 50.000 0.00 0.00 34.45 3.18
341 358 0.690762 TTGCCTACCCGAGCTCTTTT 59.309 50.000 12.85 0.00 0.00 2.27
343 360 1.087501 GCCTACCCGAGCTCTTTTTG 58.912 55.000 12.85 0.00 0.00 2.44
358 375 3.842925 TTTGTCGCTGGCCCTGGAC 62.843 63.158 0.00 5.16 0.00 4.02
370 387 3.458163 CTGGACGAGGGGCGCTTA 61.458 66.667 7.64 0.00 46.04 3.09
374 391 1.887707 GACGAGGGGCGCTTATTGG 60.888 63.158 7.64 0.00 46.04 3.16
407 424 1.928868 CTTTTGGACCATGGAGCCTT 58.071 50.000 21.47 0.00 0.00 4.35
408 425 1.547372 CTTTTGGACCATGGAGCCTTG 59.453 52.381 21.47 7.29 0.00 3.61
430 447 3.003763 GGCCACCTCCTCGTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
432 449 2.266055 CCACCTCCTCGTCCTTGC 59.734 66.667 0.00 0.00 0.00 4.01
442 459 4.821589 GTCCTTGCCGGGCTCGAG 62.822 72.222 21.46 8.45 39.00 4.04
499 516 2.740055 CTGAGCTCACCGCCACAC 60.740 66.667 13.74 0.00 40.39 3.82
504 521 2.034066 CTCACCGCCACACCCAAT 59.966 61.111 0.00 0.00 0.00 3.16
505 522 2.033448 TCACCGCCACACCCAATC 59.967 61.111 0.00 0.00 0.00 2.67
540 564 2.818169 ATCACACACTGGCCACCGT 61.818 57.895 0.00 0.00 0.00 4.83
550 574 4.436998 GCCACCGTAGCTCGCTGT 62.437 66.667 0.85 0.00 38.35 4.40
581 605 1.630878 GGGATCGAGCTAATGGGGATT 59.369 52.381 0.00 0.00 0.00 3.01
616 640 3.508952 AGTGAGGGAGAGGGGAAAATA 57.491 47.619 0.00 0.00 0.00 1.40
652 676 0.034896 GCGAGGGACAAAGGAAGTGA 59.965 55.000 0.00 0.00 0.00 3.41
654 678 2.093658 GCGAGGGACAAAGGAAGTGATA 60.094 50.000 0.00 0.00 0.00 2.15
659 683 5.098663 AGGGACAAAGGAAGTGATAGGTTA 58.901 41.667 0.00 0.00 0.00 2.85
672 696 1.986698 TAGGTTACAGCGTTCGCTTC 58.013 50.000 17.05 8.10 39.76 3.86
712 743 1.359459 GATTCCGACGTGGCAAGTCC 61.359 60.000 24.40 9.08 37.80 3.85
730 761 0.179156 CCACGTGCATCAAGATTGGC 60.179 55.000 10.91 0.00 0.00 4.52
761 792 0.887933 AACGGCAATGGATGTGTTCC 59.112 50.000 0.00 0.00 45.69 3.62
782 813 6.187727 TCCTGTGAGACCACTAAAAATCTT 57.812 37.500 0.00 0.00 43.55 2.40
877 911 8.655378 AAAAAGAAAATGCTAAGACGTATTCG 57.345 30.769 0.00 0.00 43.34 3.34
879 913 4.270325 AGAAAATGCTAAGACGTATTCGCC 59.730 41.667 15.64 1.50 41.18 5.54
890 925 0.042448 GTATTCGCCGTTTCCGCATC 60.042 55.000 0.00 0.00 0.00 3.91
910 945 1.507096 CGCAGCTGAACGCGTAAAC 60.507 57.895 20.43 8.20 46.23 2.01
925 960 4.506654 CGCGTAAACTATAATGTGAAGGCT 59.493 41.667 0.00 0.00 0.00 4.58
926 961 5.556382 CGCGTAAACTATAATGTGAAGGCTG 60.556 44.000 0.00 0.00 0.00 4.85
927 962 5.738370 CGTAAACTATAATGTGAAGGCTGC 58.262 41.667 0.00 0.00 0.00 5.25
1121 1158 2.762459 CCCGTCGATCCCCTCCAA 60.762 66.667 0.00 0.00 0.00 3.53
1174 1211 2.484889 GATTGGAATCCTCTGTACGGC 58.515 52.381 0.00 0.00 0.00 5.68
1175 1212 0.539986 TTGGAATCCTCTGTACGGCC 59.460 55.000 0.00 0.00 0.00 6.13
1210 1247 2.023318 CGGAGCCTAGTCGATTCGT 58.977 57.895 5.89 0.00 0.00 3.85
1215 1252 0.591741 GCCTAGTCGATTCGTCACCG 60.592 60.000 5.89 0.00 0.00 4.94
1232 1269 2.460275 CGCGTCATTCGGCATGGAA 61.460 57.895 0.00 0.00 40.26 3.53
1263 1300 0.108804 TGCGTCTCCCAATCGAGAAC 60.109 55.000 0.00 0.00 40.53 3.01
1264 1301 0.173708 GCGTCTCCCAATCGAGAACT 59.826 55.000 0.00 0.00 40.53 3.01
1335 1372 1.034838 TTTGGCTTTGTCGTGTGGCT 61.035 50.000 0.00 0.00 0.00 4.75
1338 1375 1.724582 GGCTTTGTCGTGTGGCTGTT 61.725 55.000 0.00 0.00 0.00 3.16
1408 1445 4.524053 ACCTACTAGTTTGCCCATTTAGC 58.476 43.478 0.00 0.00 0.00 3.09
1449 1486 1.013596 CGATGTGGCCGCAGATTAAA 58.986 50.000 25.48 0.00 0.00 1.52
1450 1487 1.603802 CGATGTGGCCGCAGATTAAAT 59.396 47.619 25.48 5.46 0.00 1.40
1582 1619 0.749649 AAGCGGTTGAATTGTTGCCA 59.250 45.000 0.00 0.00 0.00 4.92
1672 1709 1.001860 ACTCACTGCAGCTCCTTCTTC 59.998 52.381 15.27 0.00 0.00 2.87
1831 1868 8.029522 GCTATCAGTATCGAATGTGGAGATTTA 58.970 37.037 0.00 0.00 0.00 1.40
1906 1943 2.410785 TTCTTACGGTCGACACAGTG 57.589 50.000 18.91 0.00 32.61 3.66
1915 1952 0.032130 TCGACACAGTGGCAGACTTC 59.968 55.000 7.33 0.00 29.75 3.01
2177 2215 4.137116 TGCATTGCTATTTACTCCGACT 57.863 40.909 10.49 0.00 0.00 4.18
2195 2233 5.124776 TCCGACTTTGTTTTCTTGACATTGT 59.875 36.000 0.00 0.00 0.00 2.71
2252 2290 5.882557 ACCCAAGTCATTGATGTTCTGTATC 59.117 40.000 0.00 0.00 38.83 2.24
2254 2292 7.092891 ACCCAAGTCATTGATGTTCTGTATCTA 60.093 37.037 0.00 0.00 38.83 1.98
2482 2586 6.183360 GCAATATCAGCCAAACCAAAATTCAG 60.183 38.462 0.00 0.00 0.00 3.02
2496 2604 8.622948 ACCAAAATTCAGAGGTTCTACTTTAG 57.377 34.615 0.00 0.00 0.00 1.85
2501 2609 9.438228 AAATTCAGAGGTTCTACTTTAGCTTAC 57.562 33.333 0.00 0.00 0.00 2.34
2551 2662 9.319143 GCATATGAGATAACAATATGTACTCCC 57.681 37.037 6.97 0.00 30.25 4.30
2554 2665 7.540474 TGAGATAACAATATGTACTCCCTCC 57.460 40.000 0.00 0.00 30.25 4.30
2555 2666 6.208797 TGAGATAACAATATGTACTCCCTCCG 59.791 42.308 0.00 0.00 30.25 4.63
2556 2667 6.075984 AGATAACAATATGTACTCCCTCCGT 58.924 40.000 0.00 0.00 0.00 4.69
2557 2668 6.553852 AGATAACAATATGTACTCCCTCCGTT 59.446 38.462 0.00 0.00 0.00 4.44
2558 2669 4.667519 ACAATATGTACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
2559 2670 4.287552 ACAATATGTACTCCCTCCGTTCT 58.712 43.478 0.00 0.00 0.00 3.01
2560 2671 4.099573 ACAATATGTACTCCCTCCGTTCTG 59.900 45.833 0.00 0.00 0.00 3.02
2561 2672 2.526888 ATGTACTCCCTCCGTTCTGA 57.473 50.000 0.00 0.00 0.00 3.27
2562 2673 2.297698 TGTACTCCCTCCGTTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
2563 2674 2.816411 TGTACTCCCTCCGTTCTGAAT 58.184 47.619 0.00 0.00 0.00 2.57
2564 2675 3.170717 TGTACTCCCTCCGTTCTGAATT 58.829 45.455 0.00 0.00 0.00 2.17
2565 2676 4.346730 TGTACTCCCTCCGTTCTGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
2566 2677 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2567 2678 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2568 2679 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2569 2680 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2570 2681 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2571 2682 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2572 2683 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2573 2684 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2574 2685 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
2575 2686 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
2576 2687 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
2577 2688 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
2578 2689 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
2579 2690 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2580 2691 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
2581 2692 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2582 2693 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
2583 2694 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
2584 2695 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
2585 2696 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
2586 2697 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2587 2698 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2589 2700 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2590 2701 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
2591 2702 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
2592 2703 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
2593 2704 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
2594 2705 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
2595 2706 8.200792 GTCTTGGATTTGTCTAGATACAGATGT 58.799 37.037 0.00 0.00 0.00 3.06
2596 2707 9.421399 TCTTGGATTTGTCTAGATACAGATGTA 57.579 33.333 0.00 0.00 34.67 2.29
2619 2730 9.462606 TGTATCTAGACTCATTTTAGTGTCAGA 57.537 33.333 0.00 0.00 35.17 3.27
2623 2734 8.904834 TCTAGACTCATTTTAGTGTCAGATACC 58.095 37.037 0.00 0.00 35.17 2.73
2624 2735 7.726033 AGACTCATTTTAGTGTCAGATACCT 57.274 36.000 0.00 0.00 35.17 3.08
2625 2736 7.777095 AGACTCATTTTAGTGTCAGATACCTC 58.223 38.462 0.00 0.00 35.17 3.85
2626 2737 6.879400 ACTCATTTTAGTGTCAGATACCTCC 58.121 40.000 0.00 0.00 0.00 4.30
2627 2738 5.902681 TCATTTTAGTGTCAGATACCTCCG 58.097 41.667 0.00 0.00 0.00 4.63
2628 2739 5.421056 TCATTTTAGTGTCAGATACCTCCGT 59.579 40.000 0.00 0.00 0.00 4.69
2629 2740 6.604396 TCATTTTAGTGTCAGATACCTCCGTA 59.396 38.462 0.00 0.00 0.00 4.02
2630 2741 7.287005 TCATTTTAGTGTCAGATACCTCCGTAT 59.713 37.037 0.00 0.00 37.92 3.06
2642 2753 6.837471 ATACCTCCGTATCTAGACAAATCC 57.163 41.667 0.00 0.00 28.45 3.01
2643 2754 4.543689 ACCTCCGTATCTAGACAAATCCA 58.456 43.478 0.00 0.00 0.00 3.41
2644 2755 4.960469 ACCTCCGTATCTAGACAAATCCAA 59.040 41.667 0.00 0.00 0.00 3.53
2645 2756 5.069251 ACCTCCGTATCTAGACAAATCCAAG 59.931 44.000 0.00 0.00 0.00 3.61
2646 2757 5.302059 CCTCCGTATCTAGACAAATCCAAGA 59.698 44.000 0.00 0.00 0.00 3.02
2647 2758 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2648 2759 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2649 2760 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2650 2761 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
2651 2762 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2652 2763 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2653 2764 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2655 2766 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2656 2767 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2657 2768 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
2658 2769 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
2659 2770 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
2660 2771 8.463930 ACAAATCCAAGACAAGTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
2661 2772 8.352942 ACAAATCCAAGACAAGTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
2662 2773 6.727824 ATCCAAGACAAGTAATTCAGAACG 57.272 37.500 0.00 0.00 0.00 3.95
2663 2774 4.994852 TCCAAGACAAGTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
2664 2775 4.994852 CCAAGACAAGTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
2665 2776 5.120830 CCAAGACAAGTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
2666 2777 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2667 2778 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2668 2779 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2669 2780 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2670 2781 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2681 2792 1.677052 CGGAGGGAGTAGTTGACTAGC 59.323 57.143 0.00 0.00 39.06 3.42
2691 2802 5.533482 AGTAGTTGACTAGCACTGAAACTG 58.467 41.667 0.00 0.00 36.27 3.16
2693 2804 5.531122 AGTTGACTAGCACTGAAACTGTA 57.469 39.130 0.00 0.00 0.00 2.74
2694 2805 5.533482 AGTTGACTAGCACTGAAACTGTAG 58.467 41.667 0.00 0.00 0.00 2.74
2706 2817 7.950496 GCACTGAAACTGTAGTACTATTTTTCG 59.050 37.037 18.97 16.77 0.00 3.46
2707 2818 7.950496 CACTGAAACTGTAGTACTATTTTTCGC 59.050 37.037 18.97 4.36 0.00 4.70
2766 2880 0.237235 TGCTCGAAACAAATGGACGC 59.763 50.000 0.00 0.00 0.00 5.19
2882 3002 5.411669 GGAAAATATTACCCTGACTATGGCG 59.588 44.000 0.00 0.00 0.00 5.69
2898 3018 0.955905 GGCGTTTAAGGCACCTTTGA 59.044 50.000 7.35 0.00 37.47 2.69
2911 3031 4.857037 GGCACCTTTGAAATGATAACGAAC 59.143 41.667 0.00 0.00 0.00 3.95
3014 3134 3.214328 AGAACTGACTCGCAAAACCAAT 58.786 40.909 0.00 0.00 0.00 3.16
3019 3139 4.154195 ACTGACTCGCAAAACCAATGATAC 59.846 41.667 0.00 0.00 0.00 2.24
3020 3140 4.323417 TGACTCGCAAAACCAATGATACT 58.677 39.130 0.00 0.00 0.00 2.12
3073 3194 2.202236 GAGATGGCCTGTCCCTTGCA 62.202 60.000 3.32 0.00 0.00 4.08
3077 3198 1.186917 TGGCCTGTCCCTTGCAATTG 61.187 55.000 3.32 0.00 0.00 2.32
3145 3270 2.273557 GGCCATGTTGCTATTTTGCTG 58.726 47.619 0.00 0.00 0.00 4.41
3162 3287 0.454600 CTGGTGCATGCCATGACTTC 59.545 55.000 16.68 0.00 37.96 3.01
3232 3358 3.244561 CCATCTGGTGAACCTACACAACT 60.245 47.826 0.37 0.00 41.88 3.16
3377 3507 1.135286 CAGACTACGATGTGCTCTGCA 60.135 52.381 0.00 0.00 35.60 4.41
3443 3580 3.515104 TGTAGTTCTGATGGCTCATGTCA 59.485 43.478 0.00 0.00 0.00 3.58
3475 3612 5.610398 TGTATGTTGCTCTTCAGTTTCTCA 58.390 37.500 0.00 0.00 0.00 3.27
3565 3703 2.587060 TAATGTGGGATCTGGGGACT 57.413 50.000 0.00 0.00 0.00 3.85
3582 3720 5.538433 TGGGGACTCCAAAACATTCTTTTAG 59.462 40.000 0.00 0.00 43.84 1.85
3619 3757 5.473504 TCTTTTGATGCTTGACTTAGAACCC 59.526 40.000 0.00 0.00 0.00 4.11
3706 3844 1.001641 AGTCCAGTCTGCATTGGCC 60.002 57.895 0.00 0.00 40.13 5.36
3725 3863 3.454812 GGCCTAGACTCCCAAGTTGAATA 59.545 47.826 3.87 0.00 35.28 1.75
3775 3913 5.222079 ACCCCAAATAAACAACATGGTTC 57.778 39.130 0.00 0.00 0.00 3.62
3840 3978 7.569297 TGTACAAGATGAAAACATCGTTACAC 58.431 34.615 0.00 0.00 36.73 2.90
3883 4028 5.366482 ACCCACCTTTTAAACAAAATGCT 57.634 34.783 0.00 0.00 0.00 3.79
3894 4039 0.105408 CAAAATGCTATGCCCAGCCC 59.895 55.000 4.36 0.00 41.04 5.19
3968 4120 8.825667 TTTAAGGTTCATTGTTGCTTAATTCC 57.174 30.769 0.00 0.00 0.00 3.01
3969 4121 6.418057 AAGGTTCATTGTTGCTTAATTCCA 57.582 33.333 0.00 0.00 0.00 3.53
3970 4122 6.029346 AGGTTCATTGTTGCTTAATTCCAG 57.971 37.500 0.00 0.00 0.00 3.86
3971 4123 5.774690 AGGTTCATTGTTGCTTAATTCCAGA 59.225 36.000 0.00 0.00 0.00 3.86
3972 4124 6.267471 AGGTTCATTGTTGCTTAATTCCAGAA 59.733 34.615 0.00 0.00 0.00 3.02
3973 4125 7.038799 AGGTTCATTGTTGCTTAATTCCAGAAT 60.039 33.333 0.00 0.00 0.00 2.40
3974 4126 7.603784 GGTTCATTGTTGCTTAATTCCAGAATT 59.396 33.333 10.30 10.30 42.95 2.17
3975 4127 8.650714 GTTCATTGTTGCTTAATTCCAGAATTC 58.349 33.333 8.84 0.00 40.99 2.17
3976 4128 7.894708 TCATTGTTGCTTAATTCCAGAATTCA 58.105 30.769 8.44 0.00 40.99 2.57
3977 4129 8.366401 TCATTGTTGCTTAATTCCAGAATTCAA 58.634 29.630 8.44 6.93 40.99 2.69
3978 4130 8.653338 CATTGTTGCTTAATTCCAGAATTCAAG 58.347 33.333 8.44 11.39 40.99 3.02
3979 4131 6.690530 TGTTGCTTAATTCCAGAATTCAAGG 58.309 36.000 8.44 9.31 40.99 3.61
3980 4132 5.329035 TGCTTAATTCCAGAATTCAAGGC 57.671 39.130 8.44 6.08 40.99 4.35
3981 4133 5.018809 TGCTTAATTCCAGAATTCAAGGCT 58.981 37.500 8.44 0.81 40.99 4.58
3982 4134 5.126061 TGCTTAATTCCAGAATTCAAGGCTC 59.874 40.000 8.44 2.25 40.99 4.70
3983 4135 5.126061 GCTTAATTCCAGAATTCAAGGCTCA 59.874 40.000 8.44 0.00 40.99 4.26
3984 4136 6.183360 GCTTAATTCCAGAATTCAAGGCTCAT 60.183 38.462 8.44 0.36 40.99 2.90
3985 4137 7.632245 GCTTAATTCCAGAATTCAAGGCTCATT 60.632 37.037 8.44 9.95 40.99 2.57
3986 4138 8.821686 TTAATTCCAGAATTCAAGGCTCATTA 57.178 30.769 8.44 9.16 40.99 1.90
3987 4139 7.909485 AATTCCAGAATTCAAGGCTCATTAT 57.091 32.000 8.44 0.00 36.34 1.28
3988 4140 7.909485 ATTCCAGAATTCAAGGCTCATTATT 57.091 32.000 8.44 0.00 0.00 1.40
3989 4141 6.704289 TCCAGAATTCAAGGCTCATTATTG 57.296 37.500 8.44 0.00 0.00 1.90
3990 4142 5.068198 TCCAGAATTCAAGGCTCATTATTGC 59.932 40.000 8.44 0.00 0.00 3.56
3991 4143 5.068723 CCAGAATTCAAGGCTCATTATTGCT 59.931 40.000 8.44 0.00 0.00 3.91
3992 4144 6.406624 CCAGAATTCAAGGCTCATTATTGCTT 60.407 38.462 8.44 0.00 0.00 3.91
3993 4145 7.201848 CCAGAATTCAAGGCTCATTATTGCTTA 60.202 37.037 8.44 0.00 0.00 3.09
3994 4146 7.646922 CAGAATTCAAGGCTCATTATTGCTTAC 59.353 37.037 8.44 0.00 0.00 2.34
4057 4209 3.937706 CAGCTGGATTAAGACAAGAGGTG 59.062 47.826 5.57 0.00 0.00 4.00
4080 4232 7.655732 GGTGGAGTAAAAGTTTGTGCATTATTT 59.344 33.333 0.00 0.00 0.00 1.40
4141 4315 9.309516 GAAAATAAACATTCATGCATGACTCAT 57.690 29.630 28.72 16.92 36.36 2.90
4223 4429 8.691661 AACCTCTTGCTTGTTCTTTAGAATAA 57.308 30.769 0.00 0.00 36.33 1.40
4522 4729 3.057315 ACCATGTATGTGCTTTGCTTCAC 60.057 43.478 0.00 0.00 0.00 3.18
4526 4733 2.405892 ATGTGCTTTGCTTCACGAAC 57.594 45.000 0.00 0.00 36.06 3.95
4547 4754 1.372087 GAAGTTCGAGGGCATGGCAG 61.372 60.000 22.06 11.61 0.00 4.85
4639 4846 5.182760 AGGAAACTTTCAGTCTGATCATTGC 59.817 40.000 2.68 3.01 37.44 3.56
4678 4885 3.351740 TGTTGGCATGTAACATGTAGGG 58.648 45.455 0.00 0.00 33.43 3.53
4679 4886 3.245087 TGTTGGCATGTAACATGTAGGGT 60.245 43.478 0.00 0.00 33.43 4.34
4697 4904 4.784177 AGGGTATACGGTTATTTGGTTGG 58.216 43.478 0.00 0.00 0.00 3.77
4801 5030 4.592942 ACATGACCTTATTGCACATCAGT 58.407 39.130 0.00 0.00 0.00 3.41
4841 5072 6.446451 TGTACATACAGGTAGTTTATCCCCT 58.554 40.000 0.00 0.00 0.00 4.79
4931 5163 0.038892 TTCGAAAGGAGGAACGTCGG 60.039 55.000 0.00 0.00 32.68 4.79
5033 5265 0.533491 ATGTAAGTAACCTCGCCGCA 59.467 50.000 0.00 0.00 0.00 5.69
5115 5347 3.889815 CCAGCACCCAAGATAGATCAAA 58.110 45.455 0.00 0.00 0.00 2.69
5216 5448 7.766219 AATTGTGATTACGTAGATACCACAC 57.234 36.000 13.27 0.00 33.50 3.82
5424 5656 1.621814 CCCGGAACTCCTGACAAGTTA 59.378 52.381 0.73 0.00 37.10 2.24
5429 5661 3.935828 GGAACTCCTGACAAGTTATCTGC 59.064 47.826 0.00 0.00 37.10 4.26
5553 5791 1.834263 AGCGACTCTCTATTGCCCTTT 59.166 47.619 0.00 0.00 0.00 3.11
5582 5820 5.803967 GCTGAAAATGTTAAGATTCTGCCAG 59.196 40.000 0.00 5.44 39.41 4.85
5600 5838 3.064545 GCCAGGAAAGAATCACAGATTCG 59.935 47.826 12.53 0.81 33.51 3.34
5604 5842 5.587844 CAGGAAAGAATCACAGATTCGGAAT 59.412 40.000 2.19 2.19 33.51 3.01
5643 5886 5.756347 GTGCTGGTCGGTTCAAATATGTATA 59.244 40.000 0.00 0.00 0.00 1.47
5713 5962 2.108514 CCGTGCATCTGTTCCGCAT 61.109 57.895 0.00 0.00 38.07 4.73
6148 6417 0.679321 CTGGAAGCAAGGAAGAGGCC 60.679 60.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.513906 TGGTAATTTGATATGAAGAGTGACAAA 57.486 29.630 0.00 0.00 0.00 2.83
5 6 9.166173 CTGGTAATTTGATATGAAGAGTGACAA 57.834 33.333 0.00 0.00 0.00 3.18
6 7 7.280876 GCTGGTAATTTGATATGAAGAGTGACA 59.719 37.037 0.00 0.00 0.00 3.58
7 8 7.280876 TGCTGGTAATTTGATATGAAGAGTGAC 59.719 37.037 0.00 0.00 0.00 3.67
8 9 7.337938 TGCTGGTAATTTGATATGAAGAGTGA 58.662 34.615 0.00 0.00 0.00 3.41
9 10 7.558161 TGCTGGTAATTTGATATGAAGAGTG 57.442 36.000 0.00 0.00 0.00 3.51
10 11 8.579850 TTTGCTGGTAATTTGATATGAAGAGT 57.420 30.769 0.00 0.00 0.00 3.24
11 12 9.459640 CATTTGCTGGTAATTTGATATGAAGAG 57.540 33.333 0.00 0.00 0.00 2.85
12 13 8.415553 CCATTTGCTGGTAATTTGATATGAAGA 58.584 33.333 0.00 0.00 40.49 2.87
13 14 8.583810 CCATTTGCTGGTAATTTGATATGAAG 57.416 34.615 0.00 0.00 40.49 3.02
31 32 1.410153 CCCCTAACATCAGCCATTTGC 59.590 52.381 0.00 0.00 41.71 3.68
32 33 2.034124 CCCCCTAACATCAGCCATTTG 58.966 52.381 0.00 0.00 0.00 2.32
33 34 2.459555 CCCCCTAACATCAGCCATTT 57.540 50.000 0.00 0.00 0.00 2.32
55 56 2.841972 GAAGGACAGGTAGGGGCCCT 62.842 65.000 31.38 31.38 37.71 5.19
56 57 2.286197 AAGGACAGGTAGGGGCCC 60.286 66.667 17.12 17.12 0.00 5.80
57 58 0.914902 AAGAAGGACAGGTAGGGGCC 60.915 60.000 0.00 0.00 0.00 5.80
58 59 0.253327 CAAGAAGGACAGGTAGGGGC 59.747 60.000 0.00 0.00 0.00 5.80
59 60 1.555533 GACAAGAAGGACAGGTAGGGG 59.444 57.143 0.00 0.00 0.00 4.79
60 61 2.498078 GAGACAAGAAGGACAGGTAGGG 59.502 54.545 0.00 0.00 0.00 3.53
61 62 2.498078 GGAGACAAGAAGGACAGGTAGG 59.502 54.545 0.00 0.00 0.00 3.18
62 63 2.164624 CGGAGACAAGAAGGACAGGTAG 59.835 54.545 0.00 0.00 0.00 3.18
63 64 2.168496 CGGAGACAAGAAGGACAGGTA 58.832 52.381 0.00 0.00 0.00 3.08
64 65 0.969894 CGGAGACAAGAAGGACAGGT 59.030 55.000 0.00 0.00 0.00 4.00
65 66 0.390472 GCGGAGACAAGAAGGACAGG 60.390 60.000 0.00 0.00 0.00 4.00
66 67 0.390472 GGCGGAGACAAGAAGGACAG 60.390 60.000 0.00 0.00 31.66 3.51
67 68 1.671742 GGCGGAGACAAGAAGGACA 59.328 57.895 0.00 0.00 31.66 4.02
68 69 4.600207 GGCGGAGACAAGAAGGAC 57.400 61.111 0.00 0.00 31.66 3.85
77 78 0.525029 GTAGCGTTAGTGGCGGAGAC 60.525 60.000 0.00 0.00 35.00 3.36
78 79 1.660560 GGTAGCGTTAGTGGCGGAGA 61.661 60.000 0.00 0.00 35.00 3.71
79 80 1.226888 GGTAGCGTTAGTGGCGGAG 60.227 63.158 0.00 0.00 35.00 4.63
80 81 2.713967 GGGTAGCGTTAGTGGCGGA 61.714 63.158 0.00 0.00 35.00 5.54
81 82 2.202837 GGGTAGCGTTAGTGGCGG 60.203 66.667 0.00 0.00 35.00 6.13
82 83 2.202837 GGGGTAGCGTTAGTGGCG 60.203 66.667 0.00 0.00 35.00 5.69
83 84 1.449070 GTGGGGTAGCGTTAGTGGC 60.449 63.158 0.00 0.00 0.00 5.01
84 85 1.153706 CGTGGGGTAGCGTTAGTGG 60.154 63.158 0.00 0.00 0.00 4.00
85 86 0.734942 CACGTGGGGTAGCGTTAGTG 60.735 60.000 7.95 0.00 39.48 2.74
86 87 0.895100 TCACGTGGGGTAGCGTTAGT 60.895 55.000 17.00 0.00 39.48 2.24
87 88 0.458669 ATCACGTGGGGTAGCGTTAG 59.541 55.000 17.00 0.00 39.48 2.34
88 89 0.896923 AATCACGTGGGGTAGCGTTA 59.103 50.000 17.00 0.00 39.48 3.18
89 90 0.035739 AAATCACGTGGGGTAGCGTT 59.964 50.000 17.00 0.00 39.48 4.84
90 91 0.390735 GAAATCACGTGGGGTAGCGT 60.391 55.000 17.00 0.00 42.45 5.07
91 92 1.418342 CGAAATCACGTGGGGTAGCG 61.418 60.000 17.00 8.69 0.00 4.26
92 93 1.702491 GCGAAATCACGTGGGGTAGC 61.702 60.000 17.00 12.55 35.59 3.58
93 94 0.108329 AGCGAAATCACGTGGGGTAG 60.108 55.000 17.00 6.31 35.59 3.18
94 95 0.322322 AAGCGAAATCACGTGGGGTA 59.678 50.000 17.00 0.00 35.59 3.69
95 96 1.072505 AAGCGAAATCACGTGGGGT 59.927 52.632 17.00 0.00 35.59 4.95
96 97 1.501741 CAAGCGAAATCACGTGGGG 59.498 57.895 17.00 1.92 35.59 4.96
97 98 1.501741 CCAAGCGAAATCACGTGGG 59.498 57.895 17.00 1.11 35.59 4.61
98 99 1.501741 CCCAAGCGAAATCACGTGG 59.498 57.895 17.00 0.00 35.59 4.94
99 100 1.234615 ACCCCAAGCGAAATCACGTG 61.235 55.000 9.94 9.94 35.59 4.49
100 101 0.536460 AACCCCAAGCGAAATCACGT 60.536 50.000 0.00 0.00 35.59 4.49
101 102 0.168128 GAACCCCAAGCGAAATCACG 59.832 55.000 0.00 0.00 0.00 4.35
102 103 1.243902 TGAACCCCAAGCGAAATCAC 58.756 50.000 0.00 0.00 0.00 3.06
103 104 1.818060 CATGAACCCCAAGCGAAATCA 59.182 47.619 0.00 0.00 0.00 2.57
104 105 1.134946 CCATGAACCCCAAGCGAAATC 59.865 52.381 0.00 0.00 0.00 2.17
105 106 1.185315 CCATGAACCCCAAGCGAAAT 58.815 50.000 0.00 0.00 0.00 2.17
106 107 1.531739 GCCATGAACCCCAAGCGAAA 61.532 55.000 0.00 0.00 0.00 3.46
107 108 1.976474 GCCATGAACCCCAAGCGAA 60.976 57.895 0.00 0.00 0.00 4.70
108 109 2.361104 GCCATGAACCCCAAGCGA 60.361 61.111 0.00 0.00 0.00 4.93
109 110 3.814268 CGCCATGAACCCCAAGCG 61.814 66.667 0.00 0.00 42.39 4.68
110 111 4.133796 GCGCCATGAACCCCAAGC 62.134 66.667 0.00 0.00 0.00 4.01
111 112 2.053865 ATGCGCCATGAACCCCAAG 61.054 57.895 4.18 0.00 0.00 3.61
112 113 2.037049 ATGCGCCATGAACCCCAA 59.963 55.556 4.18 0.00 0.00 4.12
113 114 2.755064 CATGCGCCATGAACCCCA 60.755 61.111 4.18 0.00 43.81 4.96
124 125 2.300850 AATGTTGCCATCCCATGCGC 62.301 55.000 0.00 0.00 0.00 6.09
137 138 0.323178 AGCCAGCCTCAGGAATGTTG 60.323 55.000 0.00 0.00 0.00 3.33
138 139 0.034670 GAGCCAGCCTCAGGAATGTT 60.035 55.000 0.00 0.00 40.45 2.71
161 162 4.653888 GGGGGACAACCACGGGTG 62.654 72.222 0.00 0.00 41.26 4.61
166 169 4.265056 ACGCAGGGGGACAACCAC 62.265 66.667 0.00 0.00 45.96 4.16
172 175 3.675619 ATAACGCACGCAGGGGGAC 62.676 63.158 0.00 0.00 33.80 4.46
180 183 2.620863 CGGACAAAATAACGCACGC 58.379 52.632 0.00 0.00 0.00 5.34
186 189 2.173964 GACGCATGCGGACAAAATAAC 58.826 47.619 39.95 15.62 44.69 1.89
187 190 1.201976 CGACGCATGCGGACAAAATAA 60.202 47.619 39.95 0.00 44.69 1.40
188 191 0.371989 CGACGCATGCGGACAAAATA 59.628 50.000 39.95 0.00 44.69 1.40
189 192 1.134487 CGACGCATGCGGACAAAAT 59.866 52.632 39.95 20.45 44.69 1.82
213 218 2.224185 ACAACTAGCACAATGACCGACA 60.224 45.455 0.00 0.00 0.00 4.35
219 224 3.243737 ACACTCGACAACTAGCACAATGA 60.244 43.478 0.00 0.00 0.00 2.57
223 228 1.269569 CCACACTCGACAACTAGCACA 60.270 52.381 0.00 0.00 0.00 4.57
234 239 2.847234 ACTTGGGCCCACACTCGA 60.847 61.111 28.70 7.92 0.00 4.04
237 242 0.251341 GAATCACTTGGGCCCACACT 60.251 55.000 28.70 6.59 0.00 3.55
248 253 3.490348 CACCACCCAAAGAGAATCACTT 58.510 45.455 0.00 0.00 37.82 3.16
256 261 1.604593 CAGCCCACCACCCAAAGAG 60.605 63.158 0.00 0.00 0.00 2.85
260 265 4.263572 CGTCAGCCCACCACCCAA 62.264 66.667 0.00 0.00 0.00 4.12
267 272 4.309950 AACGTCCCGTCAGCCCAC 62.310 66.667 0.00 0.00 39.99 4.61
275 280 2.420043 CACCTCACAACGTCCCGT 59.580 61.111 0.00 0.00 43.97 5.28
321 338 0.690762 AAAGAGCTCGGGTAGGCAAA 59.309 50.000 8.37 0.00 0.00 3.68
329 346 0.951040 AGCGACAAAAAGAGCTCGGG 60.951 55.000 8.37 0.00 34.48 5.14
332 349 0.110010 GCCAGCGACAAAAAGAGCTC 60.110 55.000 5.27 5.27 37.94 4.09
333 350 1.518903 GGCCAGCGACAAAAAGAGCT 61.519 55.000 0.00 0.00 41.07 4.09
341 358 4.329545 GTCCAGGGCCAGCGACAA 62.330 66.667 6.18 0.00 0.00 3.18
358 375 2.591715 CCCAATAAGCGCCCCTCG 60.592 66.667 2.29 0.00 42.12 4.63
362 379 2.494445 GCAACCCAATAAGCGCCC 59.506 61.111 2.29 0.00 0.00 6.13
370 387 0.995024 AGCTGAGTAGGCAACCCAAT 59.005 50.000 0.00 0.00 37.17 3.16
374 391 1.541588 CCAAAAGCTGAGTAGGCAACC 59.458 52.381 0.00 0.00 37.17 3.77
422 439 4.821589 GAGCCCGGCAAGGACGAG 62.822 72.222 13.15 0.00 45.00 4.18
499 516 1.826385 GAGGACCACAACAGATTGGG 58.174 55.000 0.00 0.00 40.42 4.12
504 521 1.480212 ATGGCGAGGACCACAACAGA 61.480 55.000 0.00 0.00 44.17 3.41
505 522 1.003355 ATGGCGAGGACCACAACAG 60.003 57.895 0.00 0.00 44.17 3.16
540 564 2.734175 CGACCAATACAACAGCGAGCTA 60.734 50.000 0.00 0.00 0.00 3.32
550 574 1.202486 GCTCGATCCCGACCAATACAA 60.202 52.381 0.00 0.00 40.30 2.41
581 605 0.408309 TCACTTTCTCTCTCCCCGGA 59.592 55.000 0.73 0.00 0.00 5.14
672 696 1.003223 GTTTGTTCCAAAGACCGACCG 60.003 52.381 0.00 0.00 0.00 4.79
712 743 0.521867 CGCCAATCTTGATGCACGTG 60.522 55.000 12.28 12.28 0.00 4.49
714 745 1.584483 GCGCCAATCTTGATGCACG 60.584 57.895 0.00 0.00 0.00 5.34
756 787 4.764050 TTTTAGTGGTCTCACAGGAACA 57.236 40.909 0.00 0.00 45.91 3.18
761 792 9.442047 AATCTAAGATTTTTAGTGGTCTCACAG 57.558 33.333 0.00 0.00 45.91 3.66
801 833 9.103861 CGAGAAGGCTAAAAATCTAAGATTTCT 57.896 33.333 0.00 0.00 0.00 2.52
802 834 9.099454 TCGAGAAGGCTAAAAATCTAAGATTTC 57.901 33.333 0.00 0.00 0.00 2.17
803 835 9.449719 TTCGAGAAGGCTAAAAATCTAAGATTT 57.550 29.630 0.00 0.00 0.00 2.17
804 836 9.449719 TTTCGAGAAGGCTAAAAATCTAAGATT 57.550 29.630 0.00 0.00 0.00 2.40
805 837 9.449719 TTTTCGAGAAGGCTAAAAATCTAAGAT 57.550 29.630 0.00 0.00 0.00 2.40
806 838 8.842358 TTTTCGAGAAGGCTAAAAATCTAAGA 57.158 30.769 0.00 0.00 0.00 2.10
807 839 9.495754 CATTTTCGAGAAGGCTAAAAATCTAAG 57.504 33.333 0.00 0.00 31.98 2.18
808 840 9.226606 TCATTTTCGAGAAGGCTAAAAATCTAA 57.773 29.630 0.00 0.00 31.98 2.10
809 841 8.786826 TCATTTTCGAGAAGGCTAAAAATCTA 57.213 30.769 0.00 0.00 31.98 1.98
810 842 7.687941 TCATTTTCGAGAAGGCTAAAAATCT 57.312 32.000 0.00 0.00 31.98 2.40
811 843 8.742554 TTTCATTTTCGAGAAGGCTAAAAATC 57.257 30.769 0.00 0.00 31.98 2.17
812 844 7.329471 GCTTTCATTTTCGAGAAGGCTAAAAAT 59.671 33.333 10.69 0.00 41.78 1.82
813 845 6.640907 GCTTTCATTTTCGAGAAGGCTAAAAA 59.359 34.615 10.69 0.18 41.78 1.94
814 846 6.149633 GCTTTCATTTTCGAGAAGGCTAAAA 58.850 36.000 10.69 0.00 41.78 1.52
815 847 5.699839 GCTTTCATTTTCGAGAAGGCTAAA 58.300 37.500 10.69 1.05 41.78 1.85
816 848 5.296813 GCTTTCATTTTCGAGAAGGCTAA 57.703 39.130 10.69 1.40 41.78 3.09
817 849 4.946784 GCTTTCATTTTCGAGAAGGCTA 57.053 40.909 10.69 0.00 41.78 3.93
896 931 5.005012 TCACATTATAGTTTACGCGTTCAGC 59.995 40.000 20.78 7.00 43.95 4.26
899 934 6.408428 CCTTCACATTATAGTTTACGCGTTC 58.592 40.000 20.78 8.97 0.00 3.95
910 945 5.817296 TGTACAAGCAGCCTTCACATTATAG 59.183 40.000 0.00 0.00 0.00 1.31
925 960 1.686355 CAAACCCACCTGTACAAGCA 58.314 50.000 0.00 0.00 0.00 3.91
926 961 0.313987 GCAAACCCACCTGTACAAGC 59.686 55.000 0.00 0.00 0.00 4.01
927 962 0.591170 CGCAAACCCACCTGTACAAG 59.409 55.000 0.00 0.00 0.00 3.16
1174 1211 2.124320 CATAACCCAGTGCCCCGG 60.124 66.667 0.00 0.00 0.00 5.73
1175 1212 2.828549 GCATAACCCAGTGCCCCG 60.829 66.667 0.00 0.00 35.35 5.73
1215 1252 0.170116 TTTTCCATGCCGAATGACGC 59.830 50.000 0.14 0.00 38.72 5.19
1232 1269 4.331968 TGGGAGACGCAAATACAGAATTT 58.668 39.130 0.00 0.00 38.36 1.82
1338 1375 1.076549 GTGGAACAGGGGATTGGCA 59.923 57.895 0.00 0.00 41.80 4.92
1450 1487 7.222417 CACACACAAAAATGCATCTTACAAAGA 59.778 33.333 0.00 0.00 42.69 2.52
1494 1531 4.518970 GTCAAAAGGAGACATAACTGGCAA 59.481 41.667 0.00 0.00 36.06 4.52
1582 1619 1.902556 CGTCCCCGGGTACAAAGAT 59.097 57.895 21.85 0.00 0.00 2.40
1612 1649 2.048222 TCCAGCTTTGCGTCTCGG 60.048 61.111 0.00 0.00 0.00 4.63
1672 1709 2.209690 ACGGGAATTTGTAACCAGGG 57.790 50.000 0.00 0.00 0.00 4.45
1831 1868 2.009774 CCATGAAATTCGGCGTCTCTT 58.990 47.619 6.85 0.00 0.00 2.85
1859 1896 3.429684 GCTACAGAGCCTTTACTGAGACC 60.430 52.174 0.00 0.00 43.49 3.85
1906 1943 2.431454 CTTCTTGGAAGGAAGTCTGCC 58.569 52.381 0.00 0.00 41.93 4.85
1915 1952 0.036294 GACGTCCCCTTCTTGGAAGG 60.036 60.000 16.79 16.79 35.92 3.46
2015 2052 4.202010 GCTGCACCTCTTTGTCTAACAAAA 60.202 41.667 6.70 0.00 46.15 2.44
2019 2056 2.481952 CAGCTGCACCTCTTTGTCTAAC 59.518 50.000 0.00 0.00 0.00 2.34
2051 2088 8.888836 TCGATAATATGGGTCTATAGGAACAA 57.111 34.615 0.00 0.00 32.19 2.83
2078 2115 8.428063 TGAAATCACAAGGAATAAACAAATGGT 58.572 29.630 0.00 0.00 0.00 3.55
2177 2215 6.931281 TGGAACAACAATGTCAAGAAAACAAA 59.069 30.769 0.00 0.00 39.40 2.83
2405 2446 1.066143 TCTTCTGGCAAACCCGATCTC 60.066 52.381 0.00 0.00 35.87 2.75
2407 2448 1.672881 CATCTTCTGGCAAACCCGATC 59.327 52.381 0.00 0.00 35.87 3.69
2411 2452 3.766051 AGATTTCATCTTCTGGCAAACCC 59.234 43.478 0.00 0.00 35.76 4.11
2482 2586 9.315525 CAATTAGGTAAGCTAAAGTAGAACCTC 57.684 37.037 0.00 0.00 36.75 3.85
2496 2604 4.199310 TCATCTGCCACAATTAGGTAAGC 58.801 43.478 0.00 0.00 0.00 3.09
2501 2609 6.293845 GCTTCTAATCATCTGCCACAATTAGG 60.294 42.308 0.00 0.00 33.01 2.69
2546 2657 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2547 2658 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2548 2659 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2549 2660 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2550 2661 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2551 2662 5.120830 CCAAGACAAGTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
2552 2663 4.994852 CCAAGACAAGTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
2553 2664 4.994852 TCCAAGACAAGTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
2554 2665 6.727824 ATCCAAGACAAGTAATTCAGAACG 57.272 37.500 0.00 0.00 0.00 3.95
2555 2666 8.352942 ACAAATCCAAGACAAGTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
2556 2667 8.463930 ACAAATCCAAGACAAGTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
2557 2668 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
2558 2669 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
2559 2670 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
2560 2671 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2561 2672 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2563 2674 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2564 2675 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
2565 2676 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
2566 2677 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
2567 2678 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
2568 2679 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
2569 2680 8.200792 ACATCTGTATCTAGACAAATCCAAGAC 58.799 37.037 0.00 0.00 0.00 3.01
2570 2681 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
2593 2704 9.462606 TCTGACACTAAAATGAGTCTAGATACA 57.537 33.333 0.00 0.00 32.41 2.29
2597 2708 8.904834 GGTATCTGACACTAAAATGAGTCTAGA 58.095 37.037 0.00 0.00 32.41 2.43
2598 2709 8.908903 AGGTATCTGACACTAAAATGAGTCTAG 58.091 37.037 0.00 0.00 32.41 2.43
2599 2710 8.824756 AGGTATCTGACACTAAAATGAGTCTA 57.175 34.615 0.00 0.00 32.41 2.59
2600 2711 7.147811 GGAGGTATCTGACACTAAAATGAGTCT 60.148 40.741 0.00 0.00 32.41 3.24
2601 2712 6.981559 GGAGGTATCTGACACTAAAATGAGTC 59.018 42.308 0.00 0.00 0.00 3.36
2602 2713 6.405953 CGGAGGTATCTGACACTAAAATGAGT 60.406 42.308 0.00 0.00 33.17 3.41
2603 2714 5.980116 CGGAGGTATCTGACACTAAAATGAG 59.020 44.000 0.00 0.00 33.17 2.90
2604 2715 5.421056 ACGGAGGTATCTGACACTAAAATGA 59.579 40.000 0.00 0.00 35.61 2.57
2605 2716 5.661458 ACGGAGGTATCTGACACTAAAATG 58.339 41.667 0.00 0.00 35.61 2.32
2606 2717 5.934402 ACGGAGGTATCTGACACTAAAAT 57.066 39.130 0.00 0.00 35.61 1.82
2619 2730 6.312529 TGGATTTGTCTAGATACGGAGGTAT 58.687 40.000 0.00 0.00 42.01 2.73
2620 2731 5.698104 TGGATTTGTCTAGATACGGAGGTA 58.302 41.667 0.00 0.00 0.00 3.08
2621 2732 4.543689 TGGATTTGTCTAGATACGGAGGT 58.456 43.478 0.00 0.00 0.00 3.85
2622 2733 5.302059 TCTTGGATTTGTCTAGATACGGAGG 59.698 44.000 0.00 0.00 0.00 4.30
2623 2734 6.183360 TGTCTTGGATTTGTCTAGATACGGAG 60.183 42.308 0.00 0.00 0.00 4.63
2624 2735 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2625 2736 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2626 2737 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2627 2738 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2629 2740 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2630 2741 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2631 2742 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
2632 2743 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
2633 2744 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
2634 2745 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
2635 2746 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2636 2747 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
2637 2748 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2638 2749 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
2639 2750 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
2640 2751 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
2641 2752 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
2642 2753 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
2643 2754 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2644 2755 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2645 2756 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2646 2757 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2647 2758 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2648 2759 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2649 2760 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2650 2761 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2651 2762 4.607239 ACTACTCCCTCCGTTCTGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
2652 2763 3.442076 ACTACTCCCTCCGTTCTGAATT 58.558 45.455 0.00 0.00 0.00 2.17
2653 2764 3.103080 ACTACTCCCTCCGTTCTGAAT 57.897 47.619 0.00 0.00 0.00 2.57
2654 2765 2.561419 CAACTACTCCCTCCGTTCTGAA 59.439 50.000 0.00 0.00 0.00 3.02
2655 2766 2.168496 CAACTACTCCCTCCGTTCTGA 58.832 52.381 0.00 0.00 0.00 3.27
2656 2767 2.094649 GTCAACTACTCCCTCCGTTCTG 60.095 54.545 0.00 0.00 0.00 3.02
2657 2768 2.169330 GTCAACTACTCCCTCCGTTCT 58.831 52.381 0.00 0.00 0.00 3.01
2658 2769 2.169330 AGTCAACTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 30.33 3.95
2659 2770 2.305858 AGTCAACTACTCCCTCCGTT 57.694 50.000 0.00 0.00 30.33 4.44
2660 2771 2.944991 GCTAGTCAACTACTCCCTCCGT 60.945 54.545 0.00 0.00 39.80 4.69
2661 2772 1.677052 GCTAGTCAACTACTCCCTCCG 59.323 57.143 0.00 0.00 39.80 4.63
2662 2773 2.427812 GTGCTAGTCAACTACTCCCTCC 59.572 54.545 0.00 0.00 39.80 4.30
2663 2774 3.129638 CAGTGCTAGTCAACTACTCCCTC 59.870 52.174 0.00 0.00 39.80 4.30
2664 2775 3.093057 CAGTGCTAGTCAACTACTCCCT 58.907 50.000 0.00 0.00 39.80 4.20
2665 2776 3.090037 TCAGTGCTAGTCAACTACTCCC 58.910 50.000 0.00 0.00 39.80 4.30
2666 2777 4.785511 TTCAGTGCTAGTCAACTACTCC 57.214 45.455 0.00 0.00 39.80 3.85
2667 2778 5.631512 CAGTTTCAGTGCTAGTCAACTACTC 59.368 44.000 0.00 0.00 39.80 2.59
2668 2779 5.069251 ACAGTTTCAGTGCTAGTCAACTACT 59.931 40.000 0.00 0.00 42.62 2.57
2669 2780 5.290386 ACAGTTTCAGTGCTAGTCAACTAC 58.710 41.667 0.00 0.00 0.00 2.73
2670 2781 5.531122 ACAGTTTCAGTGCTAGTCAACTA 57.469 39.130 0.00 0.00 0.00 2.24
2681 2792 7.950496 GCGAAAAATAGTACTACAGTTTCAGTG 59.050 37.037 22.27 13.74 0.00 3.66
2691 2802 7.799784 TCTGTTTTGGCGAAAAATAGTACTAC 58.200 34.615 8.28 0.00 43.66 2.73
2693 2804 6.870971 TCTGTTTTGGCGAAAAATAGTACT 57.129 33.333 8.28 0.00 43.66 2.73
2694 2805 7.917720 TTTCTGTTTTGGCGAAAAATAGTAC 57.082 32.000 8.28 0.00 43.66 2.73
2706 2817 2.094026 CCCAGGCTATTTCTGTTTTGGC 60.094 50.000 0.00 0.00 0.00 4.52
2707 2818 2.497273 CCCCAGGCTATTTCTGTTTTGG 59.503 50.000 0.00 0.00 0.00 3.28
2739 2853 3.430333 TTTGTTTCGAGCAAAACCCTC 57.570 42.857 12.71 0.00 38.16 4.30
2766 2880 5.592688 TGTTTTAGAGTGAAAGGAAACCTGG 59.407 40.000 0.00 0.00 32.13 4.45
2882 3002 7.061789 CGTTATCATTTCAAAGGTGCCTTAAAC 59.938 37.037 3.65 0.00 34.84 2.01
2898 3018 9.651913 AATGGCTTTATTTGTTCGTTATCATTT 57.348 25.926 0.00 0.00 0.00 2.32
3145 3270 1.430632 CGAAGTCATGGCATGCACC 59.569 57.895 22.56 12.28 0.00 5.01
3153 3278 2.549754 ACTTCTGTTTGCGAAGTCATGG 59.450 45.455 0.00 0.00 45.81 3.66
3162 3287 2.350772 GGGTGATGAACTTCTGTTTGCG 60.351 50.000 0.00 0.00 36.39 4.85
3334 3460 5.604231 TGATGAGGTGTCTATCCTGCTAAAT 59.396 40.000 0.00 0.00 35.20 1.40
3347 3477 3.378742 ACATCGTAGTCTGATGAGGTGTC 59.621 47.826 9.72 0.00 44.76 3.67
3401 3538 6.754675 ACTACACAAAAAGGTTGCACATTTAC 59.245 34.615 0.00 0.00 30.13 2.01
3443 3580 6.233434 TGAAGAGCAACATACAGTTCAGAAT 58.767 36.000 0.00 0.00 38.74 2.40
3582 3720 8.485591 CAAGCATCAAAAGAAAGATGAAGAAAC 58.514 33.333 6.60 0.00 43.28 2.78
3626 3764 8.956426 GCTTGTCTAGCTCTAGATGACTATAAT 58.044 37.037 9.57 0.00 46.77 1.28
3706 3844 8.865090 ACTATGATATTCAACTTGGGAGTCTAG 58.135 37.037 0.00 0.00 34.21 2.43
3725 3863 5.983333 AAAGGGTCATCTGGAACTATGAT 57.017 39.130 0.00 0.00 34.89 2.45
3775 3913 7.490000 ACAGTTATAGGTCCAAATTCTAGTCG 58.510 38.462 0.00 0.00 0.00 4.18
3840 3978 4.508124 GGTTGAGTTCTGGCATCTTATACG 59.492 45.833 0.00 0.00 0.00 3.06
3883 4028 1.133513 CCATTAAGTGGGCTGGGCATA 60.134 52.381 0.00 0.00 44.79 3.14
3894 4039 6.183360 CCTCTAATGTGTTCAGCCATTAAGTG 60.183 42.308 0.00 0.00 34.19 3.16
3965 4117 6.406177 GCAATAATGAGCCTTGAATTCTGGAA 60.406 38.462 18.05 0.33 0.00 3.53
3966 4118 5.068198 GCAATAATGAGCCTTGAATTCTGGA 59.932 40.000 18.05 2.58 0.00 3.86
3967 4119 5.068723 AGCAATAATGAGCCTTGAATTCTGG 59.931 40.000 7.05 9.96 0.00 3.86
3968 4120 6.145338 AGCAATAATGAGCCTTGAATTCTG 57.855 37.500 7.05 0.00 0.00 3.02
3969 4121 6.786967 AAGCAATAATGAGCCTTGAATTCT 57.213 33.333 7.05 0.00 0.00 2.40
3970 4122 7.710896 AGTAAGCAATAATGAGCCTTGAATTC 58.289 34.615 0.00 0.00 0.00 2.17
3971 4123 7.651027 AGTAAGCAATAATGAGCCTTGAATT 57.349 32.000 0.00 0.00 0.00 2.17
3972 4124 7.340232 TGAAGTAAGCAATAATGAGCCTTGAAT 59.660 33.333 0.00 0.00 0.00 2.57
3973 4125 6.658816 TGAAGTAAGCAATAATGAGCCTTGAA 59.341 34.615 0.00 0.00 0.00 2.69
3974 4126 6.179756 TGAAGTAAGCAATAATGAGCCTTGA 58.820 36.000 0.00 0.00 0.00 3.02
3975 4127 6.441093 TGAAGTAAGCAATAATGAGCCTTG 57.559 37.500 0.00 0.00 0.00 3.61
3976 4128 6.886459 TCTTGAAGTAAGCAATAATGAGCCTT 59.114 34.615 0.00 0.00 36.31 4.35
3977 4129 6.418101 TCTTGAAGTAAGCAATAATGAGCCT 58.582 36.000 0.00 0.00 36.31 4.58
3978 4130 6.683974 TCTTGAAGTAAGCAATAATGAGCC 57.316 37.500 0.00 0.00 36.31 4.70
3979 4131 9.578439 AATTTCTTGAAGTAAGCAATAATGAGC 57.422 29.630 0.00 0.00 32.22 4.26
4029 4181 7.094032 CCTCTTGTCTTAATCCAGCTGAAATTT 60.094 37.037 17.39 5.51 0.00 1.82
4057 4209 9.908152 AGTAAATAATGCACAAACTTTTACTCC 57.092 29.630 0.00 0.00 34.87 3.85
4391 4598 8.530311 ACATATTAGGAAATTGACATTGCAACA 58.470 29.630 0.00 0.00 0.00 3.33
4451 4658 3.430453 TCCAACTTTATGCAGGAAAGGG 58.570 45.455 21.59 15.85 38.07 3.95
4507 4714 1.334059 CGTTCGTGAAGCAAAGCACAT 60.334 47.619 0.00 0.00 34.78 3.21
4526 4733 1.815421 CCATGCCCTCGAACTTCCG 60.815 63.158 0.00 0.00 0.00 4.30
4655 4862 4.260985 CCTACATGTTACATGCCAACAGA 58.739 43.478 23.43 1.92 39.15 3.41
4678 4885 8.436046 TTGTATCCAACCAAATAACCGTATAC 57.564 34.615 0.00 0.00 0.00 1.47
4679 4886 9.058174 CATTGTATCCAACCAAATAACCGTATA 57.942 33.333 0.00 0.00 32.26 1.47
4931 5163 3.264947 GAGCATTTTGGCAATCCCTTTC 58.735 45.455 0.00 0.00 35.83 2.62
5033 5265 1.949257 GCTTTTGTACAGCCGCAGT 59.051 52.632 0.00 0.00 0.00 4.40
5115 5347 2.163613 TCATGAACTCGTATCGCACTGT 59.836 45.455 0.00 0.00 0.00 3.55
5216 5448 6.101997 TGCTGCGGTATCTATTTATCATCTG 58.898 40.000 0.00 0.00 0.00 2.90
5263 5495 2.124507 TACACCAGAAGGGCTGTGGC 62.125 60.000 0.00 0.00 43.33 5.01
5264 5496 0.620556 ATACACCAGAAGGGCTGTGG 59.379 55.000 0.00 0.00 43.33 4.17
5265 5497 2.743183 GCTATACACCAGAAGGGCTGTG 60.743 54.545 0.00 0.00 43.33 3.66
5266 5498 1.486726 GCTATACACCAGAAGGGCTGT 59.513 52.381 0.00 0.00 43.33 4.40
5267 5499 1.486310 TGCTATACACCAGAAGGGCTG 59.514 52.381 0.00 0.00 44.49 4.85
5268 5500 1.765314 CTGCTATACACCAGAAGGGCT 59.235 52.381 0.00 0.00 42.05 5.19
5407 5639 3.935828 GCAGATAACTTGTCAGGAGTTCC 59.064 47.826 0.00 0.00 38.28 3.62
5424 5656 2.863704 GCTTTTGTTTTGCTCCGCAGAT 60.864 45.455 0.00 0.00 40.61 2.90
5429 5661 2.041244 GTACGCTTTTGTTTTGCTCCG 58.959 47.619 0.00 0.00 0.00 4.63
5444 5676 1.432270 GAAGCATGGAGGCTGTACGC 61.432 60.000 0.00 1.72 45.07 4.42
5553 5791 9.410556 GCAGAATCTTAACATTTTCAGCTAAAA 57.589 29.630 0.00 0.00 41.21 1.52
5582 5820 5.731686 GCATTCCGAATCTGTGATTCTTTCC 60.732 44.000 15.45 0.40 0.00 3.13
5600 5838 2.417239 CACAACCATTGCATTGCATTCC 59.583 45.455 12.95 0.00 38.76 3.01
5604 5842 0.393448 AGCACAACCATTGCATTGCA 59.607 45.000 7.38 7.38 42.83 4.08
5643 5886 3.106054 ACTCCATGAGAAGCAGAGACAT 58.894 45.455 0.00 0.00 33.32 3.06
5914 6169 4.771127 CATACGGTTCGGATGGGG 57.229 61.111 4.72 0.00 43.64 4.96
5953 6208 3.110358 CTGCACAAACAACACACATCAG 58.890 45.455 0.00 0.00 0.00 2.90
5954 6209 2.491298 ACTGCACAAACAACACACATCA 59.509 40.909 0.00 0.00 0.00 3.07
5955 6210 3.149436 ACTGCACAAACAACACACATC 57.851 42.857 0.00 0.00 0.00 3.06
6064 6328 4.387598 CATCCTGAATCCTCATCACCTTC 58.612 47.826 0.00 0.00 0.00 3.46
6073 6337 4.163078 TCTTCAGTTCCATCCTGAATCCTC 59.837 45.833 3.56 0.00 45.23 3.71
6125 6389 0.321671 TCTTCCTTGCTTCCAGGACG 59.678 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.