Multiple sequence alignment - TraesCS6B01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G412000 chr6B 100.000 5080 0 0 1 5080 685634920 685629841 0.000000e+00 9382.0
1 TraesCS6B01G412000 chr6B 99.160 119 1 0 4783 4901 685630019 685629901 1.110000e-51 215.0
2 TraesCS6B01G412000 chr6B 99.160 119 1 0 4902 5020 685630138 685630020 1.110000e-51 215.0
3 TraesCS6B01G412000 chr6B 92.208 77 6 0 3875 3951 685631010 685630934 5.380000e-20 110.0
4 TraesCS6B01G412000 chr6B 92.208 77 6 0 3911 3987 685631046 685630970 5.380000e-20 110.0
5 TraesCS6B01G412000 chr6B 80.851 94 13 4 359 451 492278492 492278581 9.130000e-08 69.4
6 TraesCS6B01G412000 chr6A 93.588 2355 116 20 1623 3951 597033271 597030926 0.000000e+00 3480.0
7 TraesCS6B01G412000 chr6A 95.721 818 31 4 807 1621 597034344 597033528 0.000000e+00 1314.0
8 TraesCS6B01G412000 chr6A 94.004 467 24 2 4437 4901 597030356 597029892 0.000000e+00 704.0
9 TraesCS6B01G412000 chr6A 89.636 550 30 10 3911 4438 597031002 597030458 0.000000e+00 675.0
10 TraesCS6B01G412000 chr6A 84.993 673 79 14 3260 3915 597029289 597028622 0.000000e+00 664.0
11 TraesCS6B01G412000 chr6A 85.882 595 53 16 5 586 597049683 597049107 5.630000e-169 604.0
12 TraesCS6B01G412000 chr6A 83.374 409 47 8 3947 4336 597028662 597028256 4.840000e-95 359.0
13 TraesCS6B01G412000 chr6A 95.000 180 8 1 4902 5080 597030010 597029831 1.080000e-71 281.0
14 TraesCS6B01G412000 chr6A 78.571 280 30 7 4535 4810 597028062 597027809 1.890000e-34 158.0
15 TraesCS6B01G412000 chr6A 92.683 41 3 0 3947 3987 597031002 597030962 5.490000e-05 60.2
16 TraesCS6B01G412000 chr6D 93.131 2344 118 14 1623 3948 451751166 451753484 0.000000e+00 3397.0
17 TraesCS6B01G412000 chr6D 89.255 1061 58 28 581 1616 451749863 451750892 0.000000e+00 1277.0
18 TraesCS6B01G412000 chr6D 84.871 542 57 10 3911 4431 451753411 451753948 1.620000e-144 523.0
19 TraesCS6B01G412000 chr6D 89.695 262 24 3 52 312 451668904 451669163 1.050000e-86 331.0
20 TraesCS6B01G412000 chr6D 86.312 263 24 10 337 587 451747263 451747525 5.010000e-70 276.0
21 TraesCS6B01G412000 chr6D 85.315 286 14 15 4616 4901 451756036 451756293 2.330000e-68 270.0
22 TraesCS6B01G412000 chr6D 93.889 180 9 2 4902 5080 451756175 451756353 2.330000e-68 270.0
23 TraesCS6B01G412000 chr6D 95.902 122 4 1 4507 4627 451755571 451755692 4.010000e-46 196.0
24 TraesCS6B01G412000 chr6D 92.661 109 8 0 54 162 451668816 451668924 1.890000e-34 158.0
25 TraesCS6B01G412000 chr6D 93.333 90 2 2 4438 4523 451754052 451754141 4.130000e-26 130.0
26 TraesCS6B01G412000 chr6D 92.105 38 3 0 3947 3984 451753411 451753448 3.000000e-03 54.7
27 TraesCS6B01G412000 chr7D 87.500 72 8 1 66 137 637402357 637402427 1.170000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G412000 chr6B 685629841 685634920 5079 True 9382.000000 9382 100.000 1 5080 1 chr6B.!!$R1 5079
1 TraesCS6B01G412000 chr6A 597027809 597034344 6535 True 855.022222 3480 89.730 807 5080 9 chr6A.!!$R2 4273
2 TraesCS6B01G412000 chr6A 597049107 597049683 576 True 604.000000 604 85.882 5 586 1 chr6A.!!$R1 581
3 TraesCS6B01G412000 chr6D 451747263 451756353 9090 False 710.411111 3397 90.457 337 5080 9 chr6D.!!$F2 4743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 3120 0.036294 GAACCGCCTTAGAGTTGCCT 60.036 55.000 0.00 0.00 0.00 4.75 F
1564 3946 0.034337 TCACCCACTACAAGTTCCGC 59.966 55.000 0.00 0.00 0.00 5.54 F
2832 5494 1.001293 CAGCTGAGAAGTGGCACTACA 59.999 52.381 22.37 18.85 0.00 2.74 F
3923 6598 0.321298 ACGCGCAGAACCCTGTTATT 60.321 50.000 5.73 0.00 42.35 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 4374 0.537371 CACGGGGAAAACTCCAGCTT 60.537 55.0 0.0 0.0 0.00 3.74 R
2954 5616 0.385390 CAGTTTGGTCCTGTGGCAAC 59.615 55.0 0.0 0.0 0.00 4.17 R
3939 6614 0.676782 ATAACAGGGTTCTGCGTGCC 60.677 55.0 0.0 0.0 44.59 5.01 R
4889 9495 0.106708 TGTGTTGCAGAGTCCTGGAC 59.893 55.0 19.2 19.2 40.57 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.864830 TCATTTTTCGTTTTTGCTCTTCG 57.135 34.783 0.00 0.00 0.00 3.79
23 24 5.574082 TCATTTTTCGTTTTTGCTCTTCGA 58.426 33.333 0.00 0.00 0.00 3.71
29 30 2.731976 CGTTTTTGCTCTTCGACTAGCT 59.268 45.455 16.70 0.00 39.53 3.32
52 53 4.749245 GTGAAAGTCACATGGATTTCGT 57.251 40.909 3.52 0.00 46.22 3.85
61 62 3.064408 CACATGGATTTCGTGATGTGAGG 59.936 47.826 0.00 0.00 45.66 3.86
67 68 1.627864 TTCGTGATGTGAGGGAGACA 58.372 50.000 0.00 0.00 0.00 3.41
97 98 8.547967 TGAATACTAACACAAAGAGGAATGAC 57.452 34.615 0.00 0.00 0.00 3.06
136 137 9.906660 TCACCATGTTCAAATCTTACAAAATAC 57.093 29.630 0.00 0.00 0.00 1.89
166 167 1.135333 GAGGGAGACGAAGATGGTGTC 59.865 57.143 0.00 0.00 0.00 3.67
189 191 2.119832 ACACGACCTAGGGCCAGT 59.880 61.111 14.81 7.30 0.00 4.00
230 232 1.151668 CTCCTTGTGTTCCTCTTGCG 58.848 55.000 0.00 0.00 0.00 4.85
241 243 1.648720 CTCTTGCGTGGGTGTTGTG 59.351 57.895 0.00 0.00 0.00 3.33
245 247 2.826738 GCGTGGGTGTTGTGGTGT 60.827 61.111 0.00 0.00 0.00 4.16
247 249 1.431440 CGTGGGTGTTGTGGTGTTG 59.569 57.895 0.00 0.00 0.00 3.33
324 326 3.394606 ACCTTCCTACAACTGTGTGGATT 59.605 43.478 7.08 0.00 38.46 3.01
325 327 4.141251 ACCTTCCTACAACTGTGTGGATTT 60.141 41.667 7.08 0.00 38.46 2.17
326 328 4.216257 CCTTCCTACAACTGTGTGGATTTG 59.784 45.833 7.08 0.00 38.46 2.32
329 331 3.253188 CCTACAACTGTGTGGATTTGTGG 59.747 47.826 0.00 0.00 38.46 4.17
330 332 3.011566 ACAACTGTGTGGATTTGTGGA 57.988 42.857 0.00 0.00 36.31 4.02
333 335 2.517959 ACTGTGTGGATTTGTGGATGG 58.482 47.619 0.00 0.00 0.00 3.51
335 337 3.245371 ACTGTGTGGATTTGTGGATGGAT 60.245 43.478 0.00 0.00 0.00 3.41
349 351 3.276857 GGATGGATTGGATGGATGATCG 58.723 50.000 0.00 0.00 30.87 3.69
350 352 3.307975 GGATGGATTGGATGGATGATCGT 60.308 47.826 0.00 0.00 30.87 3.73
352 354 2.289010 TGGATTGGATGGATGATCGTCG 60.289 50.000 8.82 0.00 30.87 5.12
383 385 3.621715 GGTTGAAGGTGTCTAAATAGCCG 59.378 47.826 0.00 0.00 0.00 5.52
388 390 2.431057 AGGTGTCTAAATAGCCGGTCTG 59.569 50.000 1.90 0.00 0.00 3.51
445 447 0.839946 TTGATCCAAGGGCTCTAGGC 59.160 55.000 0.00 0.00 40.90 3.93
473 475 1.120530 TTCTCTCGCAATACCTCCCC 58.879 55.000 0.00 0.00 0.00 4.81
475 477 1.497716 TCTCTCGCAATACCTCCCCTA 59.502 52.381 0.00 0.00 0.00 3.53
487 489 1.205055 CTCCCCTAAGGTCCAAGGAC 58.795 60.000 10.80 10.80 43.87 3.85
507 509 2.516702 ACCCCTTAGGAACAAACAAGGT 59.483 45.455 0.00 0.00 39.89 3.50
514 516 7.272244 CCTTAGGAACAAACAAGGTTGAAATT 58.728 34.615 4.63 0.00 34.15 1.82
520 522 7.042523 GGAACAAACAAGGTTGAAATTGATGAG 60.043 37.037 4.63 0.00 32.59 2.90
550 564 2.176045 TCCTCGTTGCAGAATCACCTA 58.824 47.619 0.00 0.00 0.00 3.08
555 569 2.852413 CGTTGCAGAATCACCTAGTACG 59.148 50.000 0.00 0.00 0.00 3.67
588 603 4.017380 GAGTGTGGATACTCGTACTGTG 57.983 50.000 0.00 0.00 37.88 3.66
589 604 2.163815 AGTGTGGATACTCGTACTGTGC 59.836 50.000 0.00 0.00 37.61 4.57
594 2953 2.810274 GGATACTCGTACTGTGCGGATA 59.190 50.000 17.81 10.84 0.00 2.59
596 2955 4.437121 GGATACTCGTACTGTGCGGATATC 60.437 50.000 21.99 21.99 0.00 1.63
611 2970 2.218603 GATATCCGGACGCCAACAAAT 58.781 47.619 6.12 0.00 0.00 2.32
617 2976 0.893727 GGACGCCAACAAATCACCCT 60.894 55.000 0.00 0.00 0.00 4.34
633 2992 3.396276 TCACCCTTATGTTTGGTTCCAGA 59.604 43.478 0.00 0.00 0.00 3.86
653 3012 5.097529 CAGATTGTGGGATTTGAACATTCG 58.902 41.667 0.00 0.00 32.28 3.34
654 3013 5.009631 AGATTGTGGGATTTGAACATTCGA 58.990 37.500 0.00 0.00 32.28 3.71
656 3015 4.497473 TGTGGGATTTGAACATTCGAAC 57.503 40.909 0.00 0.00 33.63 3.95
663 3023 2.242047 TGAACATTCGAACCGGTTCA 57.758 45.000 38.72 25.42 45.12 3.18
666 3026 2.762535 ACATTCGAACCGGTTCAGAT 57.237 45.000 38.72 29.37 39.46 2.90
678 3038 4.097892 ACCGGTTCAGATAAATTTGATGGC 59.902 41.667 0.00 0.00 0.00 4.40
680 3040 4.097741 CGGTTCAGATAAATTTGATGGCCA 59.902 41.667 8.56 8.56 0.00 5.36
686 3046 2.083167 AAATTTGATGGCCAGCGTTG 57.917 45.000 17.68 0.00 0.00 4.10
720 3080 9.889128 AAAAATATCCGAAATGTCAAATCCAAT 57.111 25.926 0.00 0.00 0.00 3.16
730 3090 9.525409 GAAATGTCAAATCCAATGATTTAGGAG 57.475 33.333 0.60 0.00 46.87 3.69
746 3106 2.991250 AGGAGGTGATTTGATGAACCG 58.009 47.619 0.00 0.00 37.78 4.44
760 3120 0.036294 GAACCGCCTTAGAGTTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
762 3124 1.272807 ACCGCCTTAGAGTTGCCTAA 58.727 50.000 0.00 0.00 0.00 2.69
778 3140 3.244284 TGCCTAAGGTTTCAGTTCGCTAA 60.244 43.478 0.00 0.00 0.00 3.09
783 3145 1.877443 GGTTTCAGTTCGCTAAAGCCA 59.123 47.619 0.00 0.00 37.91 4.75
786 3148 0.673644 TCAGTTCGCTAAAGCCAGGC 60.674 55.000 1.84 1.84 37.91 4.85
787 3149 0.955428 CAGTTCGCTAAAGCCAGGCA 60.955 55.000 15.80 0.00 37.91 4.75
788 3150 0.250727 AGTTCGCTAAAGCCAGGCAA 60.251 50.000 15.80 0.00 37.91 4.52
789 3151 0.596082 GTTCGCTAAAGCCAGGCAAA 59.404 50.000 15.80 0.00 37.91 3.68
790 3152 0.596082 TTCGCTAAAGCCAGGCAAAC 59.404 50.000 15.80 0.00 37.91 2.93
791 3153 1.154225 CGCTAAAGCCAGGCAAACG 60.154 57.895 15.80 6.08 37.91 3.60
792 3154 1.444383 GCTAAAGCCAGGCAAACGC 60.444 57.895 15.80 7.14 34.31 4.84
793 3155 2.819117 GCTAAAGCCAGGCAAACGCC 62.819 60.000 15.80 0.00 41.95 5.68
844 3207 3.563808 AGATAGTTTGTGCAGCAACGAAA 59.436 39.130 0.00 0.00 36.72 3.46
1038 3401 1.153628 GGGACTGAACCGGTCATCG 60.154 63.158 8.04 2.03 41.15 3.84
1134 3497 0.178767 CCATCTCCGCAACTCCATCA 59.821 55.000 0.00 0.00 0.00 3.07
1142 3505 1.168714 GCAACTCCATCAGACCCAAC 58.831 55.000 0.00 0.00 0.00 3.77
1143 3517 1.826385 CAACTCCATCAGACCCAACC 58.174 55.000 0.00 0.00 0.00 3.77
1227 3601 1.139095 GGAGTCGTTCGAGCGGATT 59.861 57.895 21.60 7.45 0.00 3.01
1326 3700 1.645710 TCAAGGACTTCACCTCCCTC 58.354 55.000 0.00 0.00 39.62 4.30
1363 3745 3.378427 CGCTCCTTTCCCCTTTAAATCTG 59.622 47.826 0.00 0.00 0.00 2.90
1369 3751 3.652057 TCCCCTTTAAATCTGCTCCTG 57.348 47.619 0.00 0.00 0.00 3.86
1381 3763 2.179517 CTCCTGTCTCGTCACGGC 59.820 66.667 0.00 0.00 0.00 5.68
1477 3859 3.712881 GCCGTCGTCCTTGTGTGC 61.713 66.667 0.00 0.00 0.00 4.57
1564 3946 0.034337 TCACCCACTACAAGTTCCGC 59.966 55.000 0.00 0.00 0.00 5.54
1616 3998 7.773224 TCGATGACAATTATGACAGGGTAATTT 59.227 33.333 0.00 0.00 34.81 1.82
1618 4000 9.520204 GATGACAATTATGACAGGGTAATTTTG 57.480 33.333 0.00 0.00 34.81 2.44
1620 4002 8.865090 TGACAATTATGACAGGGTAATTTTGTT 58.135 29.630 0.00 0.00 30.32 2.83
1621 4003 9.139174 GACAATTATGACAGGGTAATTTTGTTG 57.861 33.333 0.00 0.00 30.32 3.33
1641 4290 5.196695 GTTGAATAGCCCTCAATTTCCTCT 58.803 41.667 0.00 0.00 35.36 3.69
1673 4322 3.149196 TGAATCTCAAGGTTTGCTGACC 58.851 45.455 1.32 1.32 40.11 4.02
1725 4374 3.582647 TGAAAGGATGGAAGTCTAGTGCA 59.417 43.478 0.00 0.00 0.00 4.57
1737 4386 3.142174 GTCTAGTGCAAGCTGGAGTTTT 58.858 45.455 0.00 0.00 0.00 2.43
1813 4462 1.826385 AAGTTTCTGGGCTTGATCCG 58.174 50.000 0.00 0.00 0.00 4.18
1848 4497 5.255687 ACAGTTTCCATCAGACATATTGCA 58.744 37.500 0.00 0.00 0.00 4.08
1888 4537 2.434336 TGCTTGTAGATATTGCCGGACT 59.566 45.455 5.05 0.00 0.00 3.85
1902 4551 2.418976 GCCGGACTGTTATTTTCTGGTC 59.581 50.000 5.05 0.00 37.99 4.02
1916 4565 1.277273 TCTGGTCTGCTGAACATGGAG 59.723 52.381 12.11 0.58 39.45 3.86
1924 4573 2.886523 TGCTGAACATGGAGGTTCTTTG 59.113 45.455 5.83 0.00 45.74 2.77
1983 4633 9.631452 TTCAAATCTCTAGATATTCTATGCACG 57.369 33.333 4.01 0.00 33.73 5.34
1988 4638 6.015434 TCTCTAGATATTCTATGCACGCCAAA 60.015 38.462 0.00 0.00 0.00 3.28
2009 4659 6.420604 CCAAAACATTGCGTTCTTGAGTTAAT 59.579 34.615 0.00 0.00 36.59 1.40
2011 4661 5.689383 ACATTGCGTTCTTGAGTTAATGT 57.311 34.783 0.00 0.00 33.78 2.71
2015 4665 3.745975 TGCGTTCTTGAGTTAATGTCTGG 59.254 43.478 0.00 0.00 0.00 3.86
2036 4686 5.467738 TGGATCTGTTCTCTACATATGGGT 58.532 41.667 7.80 0.00 35.85 4.51
2046 4696 7.584122 TCTCTACATATGGGTGTCTTCTTAC 57.416 40.000 7.80 0.00 33.62 2.34
2047 4697 7.123383 TCTCTACATATGGGTGTCTTCTTACA 58.877 38.462 7.80 0.00 33.62 2.41
2069 4719 3.564235 CAACAATGGACCACATCAGTG 57.436 47.619 0.00 0.00 45.47 3.66
2121 4771 9.071276 ACAATGTCAAAGATAACAAGTGAATCT 57.929 29.630 0.00 0.00 0.00 2.40
2146 4796 9.722056 CTCCAATTTGTAGCATATTTACAGAAC 57.278 33.333 0.00 0.00 33.00 3.01
2147 4797 8.682710 TCCAATTTGTAGCATATTTACAGAACC 58.317 33.333 0.00 0.00 33.00 3.62
2172 4824 8.341173 CCAAGTCTCATGTTTCAGCTATTATTC 58.659 37.037 0.00 0.00 0.00 1.75
2174 4826 6.703607 AGTCTCATGTTTCAGCTATTATTCCG 59.296 38.462 0.00 0.00 0.00 4.30
2205 4857 1.073284 TGTTCTTTGCTAGGTGGGACC 59.927 52.381 0.00 0.00 38.99 4.46
2226 4878 3.243035 CCATCAAGCTCTCTAGTCGTCTG 60.243 52.174 0.00 0.00 0.00 3.51
2239 4891 9.228949 TCTCTAGTCGTCTGTACTATTTTTCTT 57.771 33.333 0.00 0.00 0.00 2.52
2274 4926 5.200483 AGGCAATTTAGCACCAATTAGCTA 58.800 37.500 0.00 0.00 42.05 3.32
2321 4973 9.661187 CTGCATAAATTACATGAAGATCTGAAC 57.339 33.333 0.00 0.00 31.50 3.18
2376 5028 3.864921 GCTCGTCCTGTCCATGTTTTACT 60.865 47.826 0.00 0.00 0.00 2.24
2394 5046 7.504238 TGTTTTACTCTTCCCTGCTTTTCATTA 59.496 33.333 0.00 0.00 0.00 1.90
2419 5071 4.673534 AACCAATTTTACCTAAGCGACG 57.326 40.909 0.00 0.00 0.00 5.12
2656 5310 6.143278 CGGTAAAACAATTTTTCTGCACCTAC 59.857 38.462 0.00 0.00 36.32 3.18
2700 5354 2.353011 GGCATGGTATTGGTATGCATGC 60.353 50.000 11.82 11.82 46.74 4.06
2831 5493 1.674221 CCAGCTGAGAAGTGGCACTAC 60.674 57.143 22.37 15.38 0.00 2.73
2832 5494 1.001293 CAGCTGAGAAGTGGCACTACA 59.999 52.381 22.37 18.85 0.00 2.74
2863 5525 7.959689 TGTGTTACTATTTTTGTAACCGCTA 57.040 32.000 12.33 0.00 45.24 4.26
2954 5616 6.500041 TGTTCTTATTTCCTTGGTTTGAACG 58.500 36.000 0.00 0.00 35.46 3.95
2963 5625 0.453793 TGGTTTGAACGTTGCCACAG 59.546 50.000 5.00 0.00 0.00 3.66
2981 5643 1.342174 CAGGACCAAACTGCTTGCAAT 59.658 47.619 0.00 0.00 33.27 3.56
2984 5646 2.802247 GGACCAAACTGCTTGCAATTTC 59.198 45.455 0.00 0.00 33.27 2.17
2993 5656 9.362539 CAAACTGCTTGCAATTTCTTATTATCT 57.637 29.630 0.00 0.00 0.00 1.98
3002 5665 9.056005 TGCAATTTCTTATTATCTCGTATGCTT 57.944 29.630 0.00 0.00 0.00 3.91
3136 5811 2.162681 GTGAAATGGCCACTGCTAACT 58.837 47.619 8.16 0.00 37.74 2.24
3314 5989 6.749923 ATATCTTCCTTTGTGCAGAAGTTC 57.250 37.500 11.19 0.00 38.50 3.01
3316 5991 5.290493 TCTTCCTTTGTGCAGAAGTTCTA 57.710 39.130 4.74 0.00 38.50 2.10
3370 6045 4.393062 ACTCTTAGCATGTTCGATTGGTTG 59.607 41.667 0.00 0.00 0.00 3.77
3717 6392 6.437477 TCGAGGGCAATACTATATTCATGAGT 59.563 38.462 0.00 0.00 0.00 3.41
3820 6495 5.035443 GTGACATCTACGGTAACATCACTC 58.965 45.833 11.35 0.00 33.92 3.51
3872 6547 1.785041 CGGGTGTCTTTGTGCCTGTG 61.785 60.000 0.00 0.00 0.00 3.66
3906 6581 2.039818 TACTAGAGCAGGGTCTGACG 57.960 55.000 11.04 2.76 32.44 4.35
3907 6582 1.316706 ACTAGAGCAGGGTCTGACGC 61.317 60.000 16.20 16.20 32.44 5.19
3908 6583 2.329678 CTAGAGCAGGGTCTGACGCG 62.330 65.000 17.61 3.53 36.04 6.01
3919 6594 3.923864 TGACGCGCAGAACCCTGT 61.924 61.111 5.73 0.00 42.35 4.00
3920 6595 2.665185 GACGCGCAGAACCCTGTT 60.665 61.111 5.73 0.00 42.35 3.16
3921 6596 1.373748 GACGCGCAGAACCCTGTTA 60.374 57.895 5.73 0.00 42.35 2.41
3922 6597 0.739813 GACGCGCAGAACCCTGTTAT 60.740 55.000 5.73 0.00 42.35 1.89
3923 6598 0.321298 ACGCGCAGAACCCTGTTATT 60.321 50.000 5.73 0.00 42.35 1.40
3924 6599 1.066716 ACGCGCAGAACCCTGTTATTA 60.067 47.619 5.73 0.00 42.35 0.98
3925 6600 1.326548 CGCGCAGAACCCTGTTATTAC 59.673 52.381 8.75 0.00 42.35 1.89
3926 6601 2.629051 GCGCAGAACCCTGTTATTACT 58.371 47.619 0.30 0.00 42.35 2.24
3927 6602 3.735820 CGCGCAGAACCCTGTTATTACTA 60.736 47.826 8.75 0.00 42.35 1.82
3928 6603 3.802685 GCGCAGAACCCTGTTATTACTAG 59.197 47.826 0.30 0.00 42.35 2.57
3929 6604 4.441079 GCGCAGAACCCTGTTATTACTAGA 60.441 45.833 0.30 0.00 42.35 2.43
3930 6605 5.282510 CGCAGAACCCTGTTATTACTAGAG 58.717 45.833 0.00 0.00 42.35 2.43
3931 6606 5.051153 GCAGAACCCTGTTATTACTAGAGC 58.949 45.833 0.00 0.00 42.35 4.09
3932 6607 5.395324 GCAGAACCCTGTTATTACTAGAGCA 60.395 44.000 0.00 0.00 42.35 4.26
3933 6608 6.276847 CAGAACCCTGTTATTACTAGAGCAG 58.723 44.000 0.00 0.00 35.70 4.24
3934 6609 5.364157 AGAACCCTGTTATTACTAGAGCAGG 59.636 44.000 0.00 0.56 42.11 4.85
3936 6611 3.996480 CCTGTTATTACTAGAGCAGGGC 58.004 50.000 0.00 0.00 39.65 5.19
3937 6612 3.244249 CCTGTTATTACTAGAGCAGGGCC 60.244 52.174 0.00 0.00 39.65 5.80
3938 6613 3.643792 CTGTTATTACTAGAGCAGGGCCT 59.356 47.826 0.00 0.00 0.00 5.19
3939 6614 3.388024 TGTTATTACTAGAGCAGGGCCTG 59.612 47.826 29.44 29.44 34.12 4.85
3940 6615 1.428869 ATTACTAGAGCAGGGCCTGG 58.571 55.000 33.43 19.21 31.21 4.45
4079 6754 2.565834 AGCTTCCTTTCTGCGTACCTAA 59.434 45.455 0.00 0.00 0.00 2.69
4092 6767 3.243134 GCGTACCTAAGATCCTGACAGAC 60.243 52.174 3.32 0.00 0.00 3.51
4122 6813 1.153229 GTACCCCTGGAATGCCGTC 60.153 63.158 0.00 0.00 36.79 4.79
4176 6867 0.740737 GGCATTTCGTCTTCCCCATG 59.259 55.000 0.00 0.00 0.00 3.66
4186 6877 2.573915 GTCTTCCCCATGTCCTCTTCTT 59.426 50.000 0.00 0.00 0.00 2.52
4208 6899 9.582431 TTCTTTTGGTATCTGTAATCTAGAACG 57.418 33.333 0.00 0.00 0.00 3.95
4220 6911 4.584029 ATCTAGAACGCAACAATTGTCG 57.416 40.909 12.39 14.39 36.65 4.35
4241 6932 6.204688 TGTCGCATCTTTCTTGAGTTGTTATT 59.795 34.615 0.00 0.00 0.00 1.40
4256 6950 9.500785 TGAGTTGTTATTATGTCATGTCTTTCA 57.499 29.630 0.00 0.00 0.00 2.69
4296 6990 6.159293 GCTTTTGCTTTAGGGGATTATATGC 58.841 40.000 0.00 0.00 43.35 3.14
4310 7004 7.552687 GGGGATTATATGCGATGTCTGAAATTA 59.447 37.037 0.00 0.00 0.00 1.40
4319 7013 5.745294 GCGATGTCTGAAATTATTTGCATGT 59.255 36.000 0.00 0.00 0.00 3.21
4328 7023 7.665690 TGAAATTATTTGCATGTTACACTGGT 58.334 30.769 0.00 0.00 0.00 4.00
4367 7062 0.179056 GTGCGCTATGGCCCTCTTTA 60.179 55.000 9.73 0.00 34.44 1.85
4375 7070 5.012893 GCTATGGCCCTCTTTATTAGCATT 58.987 41.667 0.00 0.00 0.00 3.56
4376 7071 5.105997 GCTATGGCCCTCTTTATTAGCATTG 60.106 44.000 0.00 0.00 0.00 2.82
4379 7074 3.566351 GCCCTCTTTATTAGCATTGGGT 58.434 45.455 0.00 0.00 36.00 4.51
4380 7075 3.570125 GCCCTCTTTATTAGCATTGGGTC 59.430 47.826 0.00 0.00 36.00 4.46
4381 7076 3.815401 CCCTCTTTATTAGCATTGGGTCG 59.185 47.826 0.00 0.00 0.00 4.79
4382 7077 4.451900 CCTCTTTATTAGCATTGGGTCGT 58.548 43.478 0.00 0.00 0.00 4.34
4383 7078 5.454187 CCCTCTTTATTAGCATTGGGTCGTA 60.454 44.000 0.00 0.00 0.00 3.43
4411 7107 2.194271 CAGCTTTCTAATCGGTCGGAC 58.806 52.381 0.00 0.00 0.00 4.79
4425 7121 2.602878 GTCGGACGCTGAATAAGACAA 58.397 47.619 0.00 0.00 0.00 3.18
4434 7130 6.381801 ACGCTGAATAAGACAATCCTTTTTG 58.618 36.000 0.00 0.00 0.00 2.44
4598 8849 5.741388 AACACTTGCAGTTCTTCTGTTAG 57.259 39.130 0.00 0.00 45.23 2.34
4643 9249 6.516194 GCAGCTATTTCCTATCACAAATGCAT 60.516 38.462 0.00 0.00 0.00 3.96
4661 9267 4.935702 TGCATCAAGAAACAGTGAAAAGG 58.064 39.130 0.00 0.00 0.00 3.11
4666 9272 7.600065 CATCAAGAAACAGTGAAAAGGATGAT 58.400 34.615 0.00 0.00 32.34 2.45
4723 9329 3.340814 AGCACCCATGAACTAACTCAG 57.659 47.619 0.00 0.00 0.00 3.35
4738 9344 4.713824 AACTCAGCATGGATCAAACATG 57.286 40.909 6.18 6.18 46.45 3.21
4739 9345 3.693807 ACTCAGCATGGATCAAACATGT 58.306 40.909 10.81 0.00 45.68 3.21
4740 9346 4.847198 ACTCAGCATGGATCAAACATGTA 58.153 39.130 0.00 0.00 45.68 2.29
4741 9347 4.880120 ACTCAGCATGGATCAAACATGTAG 59.120 41.667 0.00 0.00 45.68 2.74
4742 9348 4.201657 TCAGCATGGATCAAACATGTAGG 58.798 43.478 0.00 0.00 45.68 3.18
4745 9351 5.018809 AGCATGGATCAAACATGTAGGTTT 58.981 37.500 0.00 0.00 45.68 3.27
4746 9352 5.481473 AGCATGGATCAAACATGTAGGTTTT 59.519 36.000 0.00 0.00 45.68 2.43
4747 9353 6.663093 AGCATGGATCAAACATGTAGGTTTTA 59.337 34.615 0.00 0.00 45.68 1.52
4748 9354 6.974622 GCATGGATCAAACATGTAGGTTTTAG 59.025 38.462 0.00 0.00 45.68 1.85
4759 9365 8.110860 ACATGTAGGTTTTAGATTCAACAAGG 57.889 34.615 0.00 0.00 0.00 3.61
4760 9366 6.569179 TGTAGGTTTTAGATTCAACAAGGC 57.431 37.500 0.00 0.00 0.00 4.35
4830 9436 5.280945 ACATTGAATCGAACACAAGTTTGG 58.719 37.500 0.00 0.00 39.24 3.28
4847 9453 5.954335 AGTTTGGTAATAACTTGCAGCATC 58.046 37.500 0.00 0.00 32.06 3.91
4871 9477 1.478510 CAGGTGAAGTAGGCATCGTCT 59.521 52.381 0.00 0.00 0.00 4.18
4872 9478 1.478510 AGGTGAAGTAGGCATCGTCTG 59.521 52.381 0.00 0.00 0.00 3.51
4873 9479 1.471676 GGTGAAGTAGGCATCGTCTGG 60.472 57.143 0.00 0.00 0.00 3.86
4874 9480 1.204941 GTGAAGTAGGCATCGTCTGGT 59.795 52.381 0.00 0.00 0.00 4.00
4875 9481 1.476891 TGAAGTAGGCATCGTCTGGTC 59.523 52.381 0.00 0.00 0.00 4.02
4876 9482 1.476891 GAAGTAGGCATCGTCTGGTCA 59.523 52.381 0.00 0.00 0.00 4.02
4877 9483 1.557099 AGTAGGCATCGTCTGGTCAA 58.443 50.000 0.00 0.00 0.00 3.18
4878 9484 1.899814 AGTAGGCATCGTCTGGTCAAA 59.100 47.619 0.00 0.00 0.00 2.69
4879 9485 2.301870 AGTAGGCATCGTCTGGTCAAAA 59.698 45.455 0.00 0.00 0.00 2.44
4880 9486 1.523758 AGGCATCGTCTGGTCAAAAC 58.476 50.000 0.00 0.00 0.00 2.43
4881 9487 1.202758 AGGCATCGTCTGGTCAAAACA 60.203 47.619 0.00 0.00 0.00 2.83
4882 9488 1.606668 GGCATCGTCTGGTCAAAACAA 59.393 47.619 0.00 0.00 0.00 2.83
4883 9489 2.604614 GGCATCGTCTGGTCAAAACAAC 60.605 50.000 0.00 0.00 0.00 3.32
4884 9490 2.032799 GCATCGTCTGGTCAAAACAACA 59.967 45.455 0.00 0.00 0.00 3.33
4885 9491 3.488384 GCATCGTCTGGTCAAAACAACAA 60.488 43.478 0.00 0.00 0.00 2.83
4886 9492 4.282068 CATCGTCTGGTCAAAACAACAAG 58.718 43.478 0.00 0.00 0.00 3.16
4887 9493 2.680841 TCGTCTGGTCAAAACAACAAGG 59.319 45.455 0.00 0.00 0.00 3.61
4888 9494 2.680841 CGTCTGGTCAAAACAACAAGGA 59.319 45.455 0.00 0.00 0.00 3.36
4889 9495 3.242739 CGTCTGGTCAAAACAACAAGGAG 60.243 47.826 0.00 0.00 0.00 3.69
4890 9496 3.694566 GTCTGGTCAAAACAACAAGGAGT 59.305 43.478 0.00 0.00 0.00 3.85
4891 9497 3.945285 TCTGGTCAAAACAACAAGGAGTC 59.055 43.478 0.00 0.00 0.00 3.36
4892 9498 3.020984 TGGTCAAAACAACAAGGAGTCC 58.979 45.455 0.00 0.00 0.00 3.85
4893 9499 3.020984 GGTCAAAACAACAAGGAGTCCA 58.979 45.455 12.86 0.00 0.00 4.02
4894 9500 3.066760 GGTCAAAACAACAAGGAGTCCAG 59.933 47.826 12.86 5.99 0.00 3.86
4895 9501 3.066760 GTCAAAACAACAAGGAGTCCAGG 59.933 47.826 12.86 5.18 0.00 4.45
4896 9502 3.053991 TCAAAACAACAAGGAGTCCAGGA 60.054 43.478 12.86 0.00 0.00 3.86
4897 9503 2.640316 AACAACAAGGAGTCCAGGAC 57.360 50.000 12.25 12.25 0.00 3.85
4898 9504 1.807814 ACAACAAGGAGTCCAGGACT 58.192 50.000 23.18 23.18 46.42 3.85
4906 9512 2.840199 AGTCCAGGACTCTGCAACA 58.160 52.632 17.31 0.00 38.71 3.33
4907 9513 0.394565 AGTCCAGGACTCTGCAACAC 59.605 55.000 17.31 0.00 38.71 3.32
4908 9514 0.106708 GTCCAGGACTCTGCAACACA 59.893 55.000 12.94 0.00 39.61 3.72
4909 9515 0.106708 TCCAGGACTCTGCAACACAC 59.893 55.000 0.00 0.00 39.61 3.82
4910 9516 0.886490 CCAGGACTCTGCAACACACC 60.886 60.000 0.00 0.00 39.61 4.16
4911 9517 1.069765 AGGACTCTGCAACACACCG 59.930 57.895 0.00 0.00 0.00 4.94
4912 9518 1.069090 GGACTCTGCAACACACCGA 59.931 57.895 0.00 0.00 0.00 4.69
4913 9519 0.320771 GGACTCTGCAACACACCGAT 60.321 55.000 0.00 0.00 0.00 4.18
4914 9520 1.067142 GGACTCTGCAACACACCGATA 60.067 52.381 0.00 0.00 0.00 2.92
4915 9521 2.418746 GGACTCTGCAACACACCGATAT 60.419 50.000 0.00 0.00 0.00 1.63
4916 9522 2.860735 GACTCTGCAACACACCGATATC 59.139 50.000 0.00 0.00 0.00 1.63
4917 9523 2.233676 ACTCTGCAACACACCGATATCA 59.766 45.455 3.12 0.00 0.00 2.15
4918 9524 2.604914 CTCTGCAACACACCGATATCAC 59.395 50.000 3.12 0.00 0.00 3.06
4919 9525 2.233676 TCTGCAACACACCGATATCACT 59.766 45.455 3.12 0.00 0.00 3.41
4920 9526 3.445805 TCTGCAACACACCGATATCACTA 59.554 43.478 3.12 0.00 0.00 2.74
4921 9527 4.081917 TCTGCAACACACCGATATCACTAA 60.082 41.667 3.12 0.00 0.00 2.24
4922 9528 4.765273 TGCAACACACCGATATCACTAAT 58.235 39.130 3.12 0.00 0.00 1.73
4923 9529 5.182487 TGCAACACACCGATATCACTAATT 58.818 37.500 3.12 0.00 0.00 1.40
4924 9530 5.293324 TGCAACACACCGATATCACTAATTC 59.707 40.000 3.12 0.00 0.00 2.17
4925 9531 5.293324 GCAACACACCGATATCACTAATTCA 59.707 40.000 3.12 0.00 0.00 2.57
4926 9532 6.183360 GCAACACACCGATATCACTAATTCAA 60.183 38.462 3.12 0.00 0.00 2.69
4927 9533 6.903883 ACACACCGATATCACTAATTCAAC 57.096 37.500 3.12 0.00 0.00 3.18
4928 9534 6.403049 ACACACCGATATCACTAATTCAACA 58.597 36.000 3.12 0.00 0.00 3.33
4929 9535 7.047891 ACACACCGATATCACTAATTCAACAT 58.952 34.615 3.12 0.00 0.00 2.71
4930 9536 7.552687 ACACACCGATATCACTAATTCAACATT 59.447 33.333 3.12 0.00 0.00 2.71
4931 9537 7.852454 CACACCGATATCACTAATTCAACATTG 59.148 37.037 3.12 0.00 0.00 2.82
4932 9538 7.768582 ACACCGATATCACTAATTCAACATTGA 59.231 33.333 3.12 0.00 34.92 2.57
4945 9551 5.749596 TCAACATTGAATCGAACACAAGT 57.250 34.783 0.00 0.00 33.55 3.16
4946 9552 6.130298 TCAACATTGAATCGAACACAAGTT 57.870 33.333 0.00 1.42 35.87 2.66
4947 9553 6.559810 TCAACATTGAATCGAACACAAGTTT 58.440 32.000 0.00 0.00 34.27 2.66
4948 9554 6.471841 TCAACATTGAATCGAACACAAGTTTG 59.528 34.615 0.00 4.79 36.09 2.93
4949 9555 5.280945 ACATTGAATCGAACACAAGTTTGG 58.719 37.500 0.00 0.00 39.24 3.28
4950 9556 4.974368 TTGAATCGAACACAAGTTTGGT 57.026 36.364 0.00 0.00 39.24 3.67
4951 9557 6.038825 ACATTGAATCGAACACAAGTTTGGTA 59.961 34.615 0.00 0.00 39.24 3.25
4952 9558 6.438259 TTGAATCGAACACAAGTTTGGTAA 57.562 33.333 0.00 0.00 39.24 2.85
4953 9559 6.627395 TGAATCGAACACAAGTTTGGTAAT 57.373 33.333 0.00 0.00 39.24 1.89
4954 9560 7.731882 TGAATCGAACACAAGTTTGGTAATA 57.268 32.000 0.00 0.00 39.24 0.98
4955 9561 8.155821 TGAATCGAACACAAGTTTGGTAATAA 57.844 30.769 0.00 0.00 39.24 1.40
4956 9562 8.071368 TGAATCGAACACAAGTTTGGTAATAAC 58.929 33.333 0.00 0.00 39.24 1.89
4957 9563 7.739498 ATCGAACACAAGTTTGGTAATAACT 57.261 32.000 0.00 0.00 39.24 2.24
4958 9564 7.556733 TCGAACACAAGTTTGGTAATAACTT 57.443 32.000 0.00 0.00 44.38 2.66
4964 9570 5.782893 AAGTTTGGTAATAACTTGCAGCA 57.217 34.783 0.00 0.00 42.54 4.41
4965 9571 5.982890 AGTTTGGTAATAACTTGCAGCAT 57.017 34.783 0.00 0.00 32.06 3.79
4966 9572 5.954335 AGTTTGGTAATAACTTGCAGCATC 58.046 37.500 0.00 0.00 32.06 3.91
4967 9573 5.476599 AGTTTGGTAATAACTTGCAGCATCA 59.523 36.000 0.00 0.00 32.06 3.07
4968 9574 4.963276 TGGTAATAACTTGCAGCATCAC 57.037 40.909 0.00 0.00 0.00 3.06
4969 9575 3.373748 TGGTAATAACTTGCAGCATCACG 59.626 43.478 0.00 0.00 0.00 4.35
4970 9576 2.549633 AATAACTTGCAGCATCACGC 57.450 45.000 0.00 0.00 42.91 5.34
4971 9577 1.452110 ATAACTTGCAGCATCACGCA 58.548 45.000 0.00 0.00 46.13 5.24
4972 9578 0.798159 TAACTTGCAGCATCACGCAG 59.202 50.000 0.00 0.00 46.13 5.18
4973 9579 1.859427 AACTTGCAGCATCACGCAGG 61.859 55.000 0.00 0.00 46.13 4.85
4974 9580 2.281692 TTGCAGCATCACGCAGGT 60.282 55.556 0.00 0.00 46.13 4.00
4975 9581 2.523184 CTTGCAGCATCACGCAGGTG 62.523 60.000 0.00 0.00 46.13 4.00
4984 9590 3.466881 ACGCAGGTGAAGTAGGCA 58.533 55.556 0.00 0.00 0.00 4.75
4985 9591 1.983224 ACGCAGGTGAAGTAGGCAT 59.017 52.632 0.00 0.00 0.00 4.40
4986 9592 0.108138 ACGCAGGTGAAGTAGGCATC 60.108 55.000 0.00 0.00 0.00 3.91
4987 9593 1.148157 CGCAGGTGAAGTAGGCATCG 61.148 60.000 0.00 0.00 0.00 3.84
4988 9594 0.108138 GCAGGTGAAGTAGGCATCGT 60.108 55.000 0.00 0.00 0.00 3.73
4989 9595 1.927895 CAGGTGAAGTAGGCATCGTC 58.072 55.000 0.00 0.00 0.00 4.20
4992 9598 1.471676 GGTGAAGTAGGCATCGTCTGG 60.472 57.143 0.00 0.00 0.00 3.86
5011 9617 3.947834 CTGGTCAAAACAACAAGGAGTCT 59.052 43.478 0.00 0.00 0.00 3.24
5049 9655 3.660865 ACACGAAAGAAGTACCACCATC 58.339 45.455 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.455525 AGTCGAAGAGCAAAAACGAAAAATG 59.544 36.000 0.00 0.00 36.95 2.32
2 3 5.578776 AGTCGAAGAGCAAAAACGAAAAAT 58.421 33.333 0.00 0.00 36.95 1.82
4 5 4.609691 AGTCGAAGAGCAAAAACGAAAA 57.390 36.364 0.00 0.00 36.95 2.29
5 6 4.318546 GCTAGTCGAAGAGCAAAAACGAAA 60.319 41.667 13.51 0.00 36.95 3.46
6 7 3.183775 GCTAGTCGAAGAGCAAAAACGAA 59.816 43.478 13.51 0.00 36.95 3.85
7 8 2.729882 GCTAGTCGAAGAGCAAAAACGA 59.270 45.455 13.51 0.00 36.95 3.85
8 9 2.731976 AGCTAGTCGAAGAGCAAAAACG 59.268 45.455 18.99 0.00 41.36 3.60
9 10 4.314948 GAGCTAGTCGAAGAGCAAAAAC 57.685 45.455 18.99 4.67 41.36 2.43
48 49 1.627864 TGTCTCCCTCACATCACGAA 58.372 50.000 0.00 0.00 0.00 3.85
52 53 5.955961 TCATATTTGTCTCCCTCACATCA 57.044 39.130 0.00 0.00 0.00 3.07
97 98 5.355910 TGAACATGGTGATGACATCAATGAG 59.644 40.000 26.24 17.14 40.69 2.90
136 137 0.457851 CGTCTCCCTCCTTGCTACAG 59.542 60.000 0.00 0.00 0.00 2.74
143 144 1.273324 ACCATCTTCGTCTCCCTCCTT 60.273 52.381 0.00 0.00 0.00 3.36
193 195 2.491152 GCACCGCCACCATCAATG 59.509 61.111 0.00 0.00 0.00 2.82
230 232 0.968393 ACCAACACCACAACACCCAC 60.968 55.000 0.00 0.00 0.00 4.61
241 243 2.270352 TCATCTCCAACACCAACACC 57.730 50.000 0.00 0.00 0.00 4.16
245 247 2.373169 AGAGCTTCATCTCCAACACCAA 59.627 45.455 0.00 0.00 33.66 3.67
247 249 2.746362 CAAGAGCTTCATCTCCAACACC 59.254 50.000 0.00 0.00 33.66 4.16
299 301 2.290641 CACACAGTTGTAGGAAGGTTGC 59.709 50.000 0.00 0.00 33.30 4.17
316 318 3.119029 CCAATCCATCCACAAATCCACAC 60.119 47.826 0.00 0.00 0.00 3.82
324 326 3.204831 TCATCCATCCAATCCATCCACAA 59.795 43.478 0.00 0.00 0.00 3.33
325 327 2.784682 TCATCCATCCAATCCATCCACA 59.215 45.455 0.00 0.00 0.00 4.17
326 328 3.513909 TCATCCATCCAATCCATCCAC 57.486 47.619 0.00 0.00 0.00 4.02
329 331 3.937706 GACGATCATCCATCCAATCCATC 59.062 47.826 0.00 0.00 0.00 3.51
330 332 3.618263 CGACGATCATCCATCCAATCCAT 60.618 47.826 0.00 0.00 0.00 3.41
333 335 3.303881 TCGACGATCATCCATCCAATC 57.696 47.619 0.00 0.00 0.00 2.67
335 337 2.867647 GCATCGACGATCATCCATCCAA 60.868 50.000 7.54 0.00 0.00 3.53
349 351 1.473434 CCTTCAACCCTAGGCATCGAC 60.473 57.143 2.05 0.00 0.00 4.20
350 352 0.830648 CCTTCAACCCTAGGCATCGA 59.169 55.000 2.05 0.00 0.00 3.59
352 354 1.282157 ACACCTTCAACCCTAGGCATC 59.718 52.381 2.05 0.00 34.79 3.91
473 475 1.670059 AAGGGGTCCTTGGACCTTAG 58.330 55.000 30.81 0.00 42.96 2.18
475 477 1.670059 CTAAGGGGTCCTTGGACCTT 58.330 55.000 30.81 22.54 43.48 3.50
487 489 3.238788 ACCTTGTTTGTTCCTAAGGGG 57.761 47.619 0.00 0.00 43.07 4.79
507 509 9.636789 AGGATATGTGATTCTCATCAATTTCAA 57.363 29.630 4.57 0.00 41.30 2.69
514 516 6.218746 CAACGAGGATATGTGATTCTCATCA 58.781 40.000 4.57 0.00 37.05 3.07
520 522 4.371786 TCTGCAACGAGGATATGTGATTC 58.628 43.478 0.00 0.00 0.00 2.52
525 527 4.122776 GTGATTCTGCAACGAGGATATGT 58.877 43.478 0.00 0.00 0.00 2.29
527 529 3.389329 AGGTGATTCTGCAACGAGGATAT 59.611 43.478 0.00 0.00 0.00 1.63
528 530 2.766263 AGGTGATTCTGCAACGAGGATA 59.234 45.455 0.00 0.00 0.00 2.59
530 532 0.976641 AGGTGATTCTGCAACGAGGA 59.023 50.000 0.00 0.00 0.00 3.71
531 533 2.093973 ACTAGGTGATTCTGCAACGAGG 60.094 50.000 0.00 0.00 33.22 4.63
532 534 3.238108 ACTAGGTGATTCTGCAACGAG 57.762 47.619 0.00 0.00 34.82 4.18
534 536 2.852413 CGTACTAGGTGATTCTGCAACG 59.148 50.000 0.00 0.00 0.00 4.10
535 537 3.187700 CCGTACTAGGTGATTCTGCAAC 58.812 50.000 0.00 0.00 0.00 4.17
537 539 1.754803 CCCGTACTAGGTGATTCTGCA 59.245 52.381 0.00 0.00 0.00 4.41
538 540 1.538419 GCCCGTACTAGGTGATTCTGC 60.538 57.143 0.00 0.00 0.00 4.26
594 2953 0.322098 TGATTTGTTGGCGTCCGGAT 60.322 50.000 7.81 0.00 0.00 4.18
596 2955 1.209127 GTGATTTGTTGGCGTCCGG 59.791 57.895 0.00 0.00 0.00 5.14
605 2964 6.463755 GGAACCAAACATAAGGGTGATTTGTT 60.464 38.462 0.00 0.00 34.51 2.83
611 2970 3.396276 TCTGGAACCAAACATAAGGGTGA 59.604 43.478 0.00 0.00 34.51 4.02
617 2976 4.526262 CCCACAATCTGGAACCAAACATAA 59.474 41.667 0.00 0.00 43.95 1.90
633 2992 5.469479 GTTCGAATGTTCAAATCCCACAAT 58.531 37.500 0.00 0.00 0.00 2.71
644 3003 2.139917 CTGAACCGGTTCGAATGTTCA 58.860 47.619 35.42 25.72 43.34 3.18
645 3004 2.409975 TCTGAACCGGTTCGAATGTTC 58.590 47.619 35.42 21.52 42.28 3.18
646 3005 2.536761 TCTGAACCGGTTCGAATGTT 57.463 45.000 35.42 6.87 42.28 2.71
648 3007 5.734855 ATTTATCTGAACCGGTTCGAATG 57.265 39.130 35.42 25.71 42.28 2.67
649 3008 6.373216 TCAAATTTATCTGAACCGGTTCGAAT 59.627 34.615 35.42 30.95 42.28 3.34
650 3009 5.701750 TCAAATTTATCTGAACCGGTTCGAA 59.298 36.000 35.42 27.56 42.28 3.71
653 3012 6.265577 CCATCAAATTTATCTGAACCGGTTC 58.734 40.000 35.49 35.49 39.91 3.62
654 3013 5.394115 GCCATCAAATTTATCTGAACCGGTT 60.394 40.000 22.50 22.50 0.00 4.44
656 3015 4.499696 GGCCATCAAATTTATCTGAACCGG 60.500 45.833 0.00 0.00 0.00 5.28
663 3023 3.290710 ACGCTGGCCATCAAATTTATCT 58.709 40.909 5.51 0.00 0.00 1.98
666 3026 2.094286 CCAACGCTGGCCATCAAATTTA 60.094 45.455 5.51 0.00 35.39 1.40
678 3038 2.791383 TTTTTGTCATCCAACGCTGG 57.209 45.000 0.00 0.00 45.08 4.85
699 3059 7.822161 ATCATTGGATTTGACATTTCGGATA 57.178 32.000 0.00 0.00 0.00 2.59
719 3079 7.286316 GGTTCATCAAATCACCTCCTAAATCAT 59.714 37.037 0.00 0.00 0.00 2.45
720 3080 6.603201 GGTTCATCAAATCACCTCCTAAATCA 59.397 38.462 0.00 0.00 0.00 2.57
725 3085 3.681594 GCGGTTCATCAAATCACCTCCTA 60.682 47.826 0.00 0.00 0.00 2.94
730 3090 1.463674 AGGCGGTTCATCAAATCACC 58.536 50.000 0.00 0.00 0.00 4.02
760 3120 3.749609 GGCTTTAGCGAACTGAAACCTTA 59.250 43.478 0.00 0.00 43.26 2.69
762 3124 2.152016 GGCTTTAGCGAACTGAAACCT 58.848 47.619 0.00 0.00 43.26 3.50
768 3130 0.955428 TGCCTGGCTTTAGCGAACTG 60.955 55.000 21.03 0.00 43.26 3.16
818 3180 0.097674 GCTGCACAAACTATCTGCCG 59.902 55.000 0.00 0.00 0.00 5.69
850 3213 8.864260 AAGCGTATTACATGTTTTACGTAAAC 57.136 30.769 27.01 14.87 45.17 2.01
1134 3497 0.999712 ATTGGATTCGGGTTGGGTCT 59.000 50.000 0.00 0.00 0.00 3.85
1142 3505 2.363306 TGGATTGGATTGGATTCGGG 57.637 50.000 0.00 0.00 0.00 5.14
1143 3517 4.147321 AGATTGGATTGGATTGGATTCGG 58.853 43.478 0.00 0.00 0.00 4.30
1326 3700 6.422400 GGAAAGGAGCGATCTTTATCTTACTG 59.578 42.308 0.00 0.00 34.92 2.74
1363 3745 2.179517 CCGTGACGAGACAGGAGC 59.820 66.667 6.54 0.00 0.00 4.70
1407 3789 0.657840 GAATCCGCCAAGAACCATCG 59.342 55.000 0.00 0.00 0.00 3.84
1412 3794 1.708027 CGACGAATCCGCCAAGAAC 59.292 57.895 0.00 0.00 39.95 3.01
1616 3998 5.332743 AGGAAATTGAGGGCTATTCAACAA 58.667 37.500 2.67 0.00 37.38 2.83
1618 4000 5.067023 CAGAGGAAATTGAGGGCTATTCAAC 59.933 44.000 2.67 0.00 37.38 3.18
1620 4002 4.385643 CCAGAGGAAATTGAGGGCTATTCA 60.386 45.833 0.00 0.00 0.00 2.57
1621 4003 4.140536 CCAGAGGAAATTGAGGGCTATTC 58.859 47.826 0.00 0.00 0.00 1.75
1641 4290 6.729690 ACCTTGAGATTCAACAAAATTCCA 57.270 33.333 0.00 0.00 32.21 3.53
1673 4322 3.072944 CACTGCAGAGAAAAAGGGAGAG 58.927 50.000 23.35 0.00 0.00 3.20
1725 4374 0.537371 CACGGGGAAAACTCCAGCTT 60.537 55.000 0.00 0.00 0.00 3.74
1737 4386 2.291043 GCTCCTCTTTCCACGGGGA 61.291 63.158 0.00 0.00 43.03 4.81
1813 4462 2.223386 TGGAAACTGTAAAGCACAACGC 60.223 45.455 0.00 0.00 36.48 4.84
1869 4518 4.060038 ACAGTCCGGCAATATCTACAAG 57.940 45.455 0.00 0.00 0.00 3.16
1883 4532 3.125316 GCAGACCAGAAAATAACAGTCCG 59.875 47.826 0.00 0.00 0.00 4.79
1888 4537 5.129634 TGTTCAGCAGACCAGAAAATAACA 58.870 37.500 0.00 0.00 0.00 2.41
1902 4551 2.486472 AGAACCTCCATGTTCAGCAG 57.514 50.000 6.67 0.00 45.62 4.24
1963 4613 5.010282 TGGCGTGCATAGAATATCTAGAGA 58.990 41.667 0.00 0.00 31.67 3.10
1983 4633 2.468831 TCAAGAACGCAATGTTTTGGC 58.531 42.857 0.00 0.00 42.09 4.52
1988 4638 6.017109 AGACATTAACTCAAGAACGCAATGTT 60.017 34.615 0.00 0.00 45.61 2.71
1996 4646 6.876257 ACAGATCCAGACATTAACTCAAGAAC 59.124 38.462 0.00 0.00 0.00 3.01
2009 4659 6.266330 CCATATGTAGAGAACAGATCCAGACA 59.734 42.308 1.24 0.00 42.70 3.41
2011 4661 5.777223 CCCATATGTAGAGAACAGATCCAGA 59.223 44.000 1.24 0.00 42.70 3.86
2015 4665 6.266558 AGACACCCATATGTAGAGAACAGATC 59.733 42.308 1.24 0.00 42.70 2.75
2036 4686 4.819630 GTCCATTGTTGGTGTAAGAAGACA 59.180 41.667 0.00 0.00 44.06 3.41
2046 4696 2.229543 CTGATGTGGTCCATTGTTGGTG 59.770 50.000 0.00 0.00 44.06 4.17
2047 4697 2.158475 ACTGATGTGGTCCATTGTTGGT 60.158 45.455 0.00 0.00 44.06 3.67
2067 4717 3.123050 GACACATTGCCAAAAGGAACAC 58.877 45.455 0.00 0.00 0.00 3.32
2069 4719 3.123050 GTGACACATTGCCAAAAGGAAC 58.877 45.455 0.00 0.00 0.00 3.62
2121 4771 8.682710 GGTTCTGTAAATATGCTACAAATTGGA 58.317 33.333 0.00 0.00 0.00 3.53
2146 4796 7.798596 ATAATAGCTGAAACATGAGACTTGG 57.201 36.000 0.00 0.00 0.00 3.61
2147 4797 8.341173 GGAATAATAGCTGAAACATGAGACTTG 58.659 37.037 0.00 0.00 0.00 3.16
2172 4824 4.452455 AGCAAAGAACACATCTAAGAACGG 59.548 41.667 0.00 0.00 37.42 4.44
2174 4826 6.651225 ACCTAGCAAAGAACACATCTAAGAAC 59.349 38.462 0.00 0.00 37.42 3.01
2205 4857 3.376859 ACAGACGACTAGAGAGCTTGATG 59.623 47.826 0.00 0.00 0.00 3.07
2226 4878 8.475331 TCATTCTCGGTCAAGAAAAATAGTAC 57.525 34.615 0.00 0.00 38.69 2.73
2239 4891 2.787473 AATTGCCTCATTCTCGGTCA 57.213 45.000 0.00 0.00 0.00 4.02
2282 4934 8.052748 TGTAATTTATGCAGAGAACTAATGGGT 58.947 33.333 0.00 0.00 0.00 4.51
2352 5004 0.687354 AACATGGACAGGACGAGCTT 59.313 50.000 0.00 0.00 0.00 3.74
2376 5028 6.377146 GGTTATGTAATGAAAAGCAGGGAAGA 59.623 38.462 0.00 0.00 0.00 2.87
2394 5046 6.183360 CGTCGCTTAGGTAAAATTGGTTATGT 60.183 38.462 0.00 0.00 0.00 2.29
2647 5299 2.715046 ACATGATGTTGGTAGGTGCAG 58.285 47.619 0.00 0.00 0.00 4.41
2656 5310 7.040271 TGCCATATCTTCATAACATGATGTTGG 60.040 37.037 20.29 12.31 41.30 3.77
2700 5354 4.101119 AGACTACCGATTAAGGAACCATGG 59.899 45.833 11.19 11.19 34.73 3.66
2863 5525 2.233271 CAAAGAGTCTGGGCATGTGTT 58.767 47.619 0.00 0.00 0.00 3.32
2904 5566 2.699846 GGGATGCAATGGGCTGATTAAA 59.300 45.455 0.00 0.00 45.15 1.52
2905 5567 2.318908 GGGATGCAATGGGCTGATTAA 58.681 47.619 0.00 0.00 45.15 1.40
2914 5576 1.137479 GAACATGTGGGGATGCAATGG 59.863 52.381 0.00 0.00 0.00 3.16
2954 5616 0.385390 CAGTTTGGTCCTGTGGCAAC 59.615 55.000 0.00 0.00 0.00 4.17
2963 5625 2.531522 AATTGCAAGCAGTTTGGTCC 57.468 45.000 4.94 0.00 37.26 4.46
2984 5646 9.915629 ACCTAAGAAAGCATACGAGATAATAAG 57.084 33.333 0.00 0.00 0.00 1.73
2993 5656 6.644248 TGCTATACCTAAGAAAGCATACGA 57.356 37.500 0.00 0.00 38.22 3.43
3136 5811 4.260985 TGCCATATTCGCAGAGAGAAAAA 58.739 39.130 0.00 0.00 38.43 1.94
3290 5965 7.624549 AGAACTTCTGCACAAAGGAAGATATA 58.375 34.615 16.89 0.00 39.52 0.86
3314 5989 5.298527 CACCATGGGAGCAATGCATATATAG 59.701 44.000 18.09 0.00 0.00 1.31
3316 5991 4.021229 CACCATGGGAGCAATGCATATAT 58.979 43.478 18.09 0.00 0.00 0.86
3370 6045 8.587952 ACCAACAAAATACATTTAAGAAGCAC 57.412 30.769 0.00 0.00 0.00 4.40
3717 6392 6.428771 GGGTATATATCAAGCGCCAAAAGTTA 59.571 38.462 2.29 0.00 0.00 2.24
3799 6474 4.097437 TGGAGTGATGTTACCGTAGATGTC 59.903 45.833 0.00 0.00 0.00 3.06
3808 6483 3.514309 AGTACCTGTGGAGTGATGTTACC 59.486 47.826 0.00 0.00 0.00 2.85
3872 6547 5.363005 TGCTCTAGTAATAACAGGGTTCTCC 59.637 44.000 0.00 0.00 0.00 3.71
3906 6581 2.629051 AGTAATAACAGGGTTCTGCGC 58.371 47.619 0.00 0.00 44.59 6.09
3907 6582 5.258456 TCTAGTAATAACAGGGTTCTGCG 57.742 43.478 0.00 0.00 44.59 5.18
3908 6583 5.051153 GCTCTAGTAATAACAGGGTTCTGC 58.949 45.833 0.00 0.00 44.59 4.26
3909 6584 6.222038 TGCTCTAGTAATAACAGGGTTCTG 57.778 41.667 0.00 0.00 46.10 3.02
3910 6585 5.364157 CCTGCTCTAGTAATAACAGGGTTCT 59.636 44.000 0.00 0.00 40.80 3.01
3911 6586 5.602628 CCTGCTCTAGTAATAACAGGGTTC 58.397 45.833 0.00 0.00 40.80 3.62
3912 6587 5.615925 CCTGCTCTAGTAATAACAGGGTT 57.384 43.478 0.00 0.00 40.80 4.11
3915 6590 3.244249 GGCCCTGCTCTAGTAATAACAGG 60.244 52.174 0.00 0.00 43.47 4.00
3916 6591 3.643792 AGGCCCTGCTCTAGTAATAACAG 59.356 47.826 0.00 0.00 0.00 3.16
3917 6592 3.388024 CAGGCCCTGCTCTAGTAATAACA 59.612 47.826 0.00 0.00 0.00 2.41
3918 6593 3.244249 CCAGGCCCTGCTCTAGTAATAAC 60.244 52.174 4.81 0.00 0.00 1.89
3919 6594 2.972713 CCAGGCCCTGCTCTAGTAATAA 59.027 50.000 4.81 0.00 0.00 1.40
3920 6595 2.609747 CCAGGCCCTGCTCTAGTAATA 58.390 52.381 4.81 0.00 0.00 0.98
3921 6596 1.428869 CCAGGCCCTGCTCTAGTAAT 58.571 55.000 4.81 0.00 0.00 1.89
3922 6597 1.338136 GCCAGGCCCTGCTCTAGTAA 61.338 60.000 4.81 0.00 0.00 2.24
3923 6598 1.762460 GCCAGGCCCTGCTCTAGTA 60.762 63.158 4.81 0.00 0.00 1.82
3924 6599 3.086600 GCCAGGCCCTGCTCTAGT 61.087 66.667 4.81 0.00 0.00 2.57
3925 6600 3.085947 TGCCAGGCCCTGCTCTAG 61.086 66.667 9.64 0.00 0.00 2.43
3926 6601 3.402681 GTGCCAGGCCCTGCTCTA 61.403 66.667 9.64 0.00 0.00 2.43
3936 6611 4.335647 AGGGTTCTGCGTGCCAGG 62.336 66.667 0.00 0.00 42.05 4.45
3937 6612 3.052082 CAGGGTTCTGCGTGCCAG 61.052 66.667 0.00 0.00 43.17 4.85
3938 6613 2.046009 TAACAGGGTTCTGCGTGCCA 62.046 55.000 0.00 0.00 44.59 4.92
3939 6614 0.676782 ATAACAGGGTTCTGCGTGCC 60.677 55.000 0.00 0.00 44.59 5.01
3940 6615 1.165270 AATAACAGGGTTCTGCGTGC 58.835 50.000 0.00 0.00 44.59 5.34
4072 6747 4.279145 TGGTCTGTCAGGATCTTAGGTAC 58.721 47.826 0.00 0.00 0.00 3.34
4079 6754 3.448934 AGTTGATGGTCTGTCAGGATCT 58.551 45.455 0.00 0.00 0.00 2.75
4092 6767 1.210478 CAGGGGTACAGGAGTTGATGG 59.790 57.143 0.00 0.00 0.00 3.51
4122 6813 3.328382 TCCAGTTAACAATGAGGGACG 57.672 47.619 8.61 0.00 0.00 4.79
4176 6867 8.261522 AGATTACAGATACCAAAAGAAGAGGAC 58.738 37.037 0.00 0.00 0.00 3.85
4186 6877 6.869695 TGCGTTCTAGATTACAGATACCAAA 58.130 36.000 0.00 0.00 0.00 3.28
4220 6911 9.495754 GACATAATAACAACTCAAGAAAGATGC 57.504 33.333 0.00 0.00 0.00 3.91
4256 6950 9.546428 AAAGCAAAAGCAAGAATTTAAGTGTAT 57.454 25.926 0.00 0.00 0.00 2.29
4266 6960 4.159557 TCCCCTAAAGCAAAAGCAAGAAT 58.840 39.130 0.00 0.00 0.00 2.40
4296 6990 7.745022 AACATGCAAATAATTTCAGACATCG 57.255 32.000 0.00 0.00 0.00 3.84
4310 7004 6.012658 CACTAACCAGTGTAACATGCAAAT 57.987 37.500 0.00 0.00 46.03 2.32
4328 7023 4.216257 GCACAAGAATTCTTCCTGCACTAA 59.784 41.667 27.75 0.00 36.97 2.24
4367 7062 6.603997 TGGTTAATTTACGACCCAATGCTAAT 59.396 34.615 0.00 0.00 32.39 1.73
4375 7070 3.706600 AGCTGGTTAATTTACGACCCA 57.293 42.857 0.00 0.00 32.39 4.51
4376 7071 4.698780 AGAAAGCTGGTTAATTTACGACCC 59.301 41.667 0.00 0.00 32.39 4.46
4379 7074 7.010738 CCGATTAGAAAGCTGGTTAATTTACGA 59.989 37.037 0.00 0.00 0.00 3.43
4380 7075 7.123830 CCGATTAGAAAGCTGGTTAATTTACG 58.876 38.462 0.00 0.00 0.00 3.18
4381 7076 7.982224 ACCGATTAGAAAGCTGGTTAATTTAC 58.018 34.615 0.00 0.00 0.00 2.01
4382 7077 7.010738 CGACCGATTAGAAAGCTGGTTAATTTA 59.989 37.037 0.00 0.00 0.00 1.40
4383 7078 6.183360 CGACCGATTAGAAAGCTGGTTAATTT 60.183 38.462 0.00 0.00 0.00 1.82
4411 7107 5.801947 CCAAAAAGGATTGTCTTATTCAGCG 59.198 40.000 0.00 0.00 41.22 5.18
4425 7121 2.560105 GCACAAGAGAGCCAAAAAGGAT 59.440 45.455 0.00 0.00 41.22 3.24
4450 7252 5.836024 TTCCTATGTTTGTTACCAGGAGT 57.164 39.130 0.00 0.00 37.91 3.85
4487 7291 1.078426 ACCTATGCCGTTCCTGCAC 60.078 57.895 0.00 0.00 42.38 4.57
4598 8849 2.921754 GCAAAGAAAGCTCATCATGTGC 59.078 45.455 3.34 3.34 37.15 4.57
4643 9249 8.567948 GTTATCATCCTTTTCACTGTTTCTTGA 58.432 33.333 0.00 0.00 0.00 3.02
4681 9287 1.677576 CAAGACTTGCCTCTTGTTGCA 59.322 47.619 1.43 0.00 41.56 4.08
4723 9329 4.989279 AACCTACATGTTTGATCCATGC 57.011 40.909 2.30 0.00 42.74 4.06
4738 9344 5.391629 CCGCCTTGTTGAATCTAAAACCTAC 60.392 44.000 0.00 0.00 0.00 3.18
4739 9345 4.698304 CCGCCTTGTTGAATCTAAAACCTA 59.302 41.667 0.00 0.00 0.00 3.08
4740 9346 3.506067 CCGCCTTGTTGAATCTAAAACCT 59.494 43.478 0.00 0.00 0.00 3.50
4741 9347 3.833442 CCGCCTTGTTGAATCTAAAACC 58.167 45.455 0.00 0.00 0.00 3.27
4742 9348 3.057526 AGCCGCCTTGTTGAATCTAAAAC 60.058 43.478 0.00 0.00 0.00 2.43
4745 9351 2.489938 AGCCGCCTTGTTGAATCTAA 57.510 45.000 0.00 0.00 0.00 2.10
4746 9352 2.290008 TGAAGCCGCCTTGTTGAATCTA 60.290 45.455 0.00 0.00 0.00 1.98
4747 9353 1.168714 GAAGCCGCCTTGTTGAATCT 58.831 50.000 0.00 0.00 0.00 2.40
4748 9354 0.881118 TGAAGCCGCCTTGTTGAATC 59.119 50.000 0.00 0.00 0.00 2.52
4759 9365 1.135315 TGAATGCTGATTTGAAGCCGC 60.135 47.619 0.00 0.00 40.06 6.53
4760 9366 2.523015 GTGAATGCTGATTTGAAGCCG 58.477 47.619 0.00 0.00 40.06 5.52
4830 9436 3.181511 TGCGTGATGCTGCAAGTTATTAC 60.182 43.478 6.36 0.00 46.63 1.89
4847 9453 0.391661 ATGCCTACTTCACCTGCGTG 60.392 55.000 0.00 0.00 41.72 5.34
4871 9477 3.020984 GGACTCCTTGTTGTTTTGACCA 58.979 45.455 0.00 0.00 0.00 4.02
4872 9478 3.020984 TGGACTCCTTGTTGTTTTGACC 58.979 45.455 0.00 0.00 0.00 4.02
4873 9479 3.066760 CCTGGACTCCTTGTTGTTTTGAC 59.933 47.826 0.00 0.00 0.00 3.18
4874 9480 3.053991 TCCTGGACTCCTTGTTGTTTTGA 60.054 43.478 0.00 0.00 0.00 2.69
4875 9481 3.066760 GTCCTGGACTCCTTGTTGTTTTG 59.933 47.826 19.53 0.00 0.00 2.44
4876 9482 3.053619 AGTCCTGGACTCCTTGTTGTTTT 60.054 43.478 23.49 0.00 38.71 2.43
4877 9483 2.509964 AGTCCTGGACTCCTTGTTGTTT 59.490 45.455 23.49 0.00 38.71 2.83
4878 9484 2.127708 AGTCCTGGACTCCTTGTTGTT 58.872 47.619 23.49 0.00 38.71 2.83
4879 9485 1.807814 AGTCCTGGACTCCTTGTTGT 58.192 50.000 23.49 0.00 38.71 3.32
4888 9494 0.394565 GTGTTGCAGAGTCCTGGACT 59.605 55.000 28.70 28.70 46.42 3.85
4889 9495 0.106708 TGTGTTGCAGAGTCCTGGAC 59.893 55.000 19.20 19.20 40.57 4.02
4890 9496 0.106708 GTGTGTTGCAGAGTCCTGGA 59.893 55.000 0.00 0.00 40.72 3.86
4891 9497 0.886490 GGTGTGTTGCAGAGTCCTGG 60.886 60.000 0.00 0.00 40.72 4.45
4892 9498 1.224069 CGGTGTGTTGCAGAGTCCTG 61.224 60.000 0.00 0.00 43.22 3.86
4893 9499 1.069765 CGGTGTGTTGCAGAGTCCT 59.930 57.895 0.00 0.00 0.00 3.85
4894 9500 0.320771 ATCGGTGTGTTGCAGAGTCC 60.321 55.000 0.00 0.00 0.00 3.85
4895 9501 2.363788 TATCGGTGTGTTGCAGAGTC 57.636 50.000 0.00 0.00 0.00 3.36
4896 9502 2.233676 TGATATCGGTGTGTTGCAGAGT 59.766 45.455 0.00 0.00 0.00 3.24
4897 9503 2.604914 GTGATATCGGTGTGTTGCAGAG 59.395 50.000 0.00 0.00 0.00 3.35
4898 9504 2.233676 AGTGATATCGGTGTGTTGCAGA 59.766 45.455 0.00 0.00 0.00 4.26
4899 9505 2.621338 AGTGATATCGGTGTGTTGCAG 58.379 47.619 0.00 0.00 0.00 4.41
4900 9506 2.760634 AGTGATATCGGTGTGTTGCA 57.239 45.000 0.00 0.00 0.00 4.08
4901 9507 5.293324 TGAATTAGTGATATCGGTGTGTTGC 59.707 40.000 0.00 0.00 0.00 4.17
4902 9508 6.902224 TGAATTAGTGATATCGGTGTGTTG 57.098 37.500 0.00 0.00 0.00 3.33
4903 9509 6.876789 TGTTGAATTAGTGATATCGGTGTGTT 59.123 34.615 0.00 0.00 0.00 3.32
4904 9510 6.403049 TGTTGAATTAGTGATATCGGTGTGT 58.597 36.000 0.00 0.00 0.00 3.72
4905 9511 6.902224 TGTTGAATTAGTGATATCGGTGTG 57.098 37.500 0.00 0.00 0.00 3.82
4906 9512 7.768582 TCAATGTTGAATTAGTGATATCGGTGT 59.231 33.333 0.00 0.00 33.55 4.16
4907 9513 8.141835 TCAATGTTGAATTAGTGATATCGGTG 57.858 34.615 0.00 0.00 33.55 4.94
4908 9514 8.731275 TTCAATGTTGAATTAGTGATATCGGT 57.269 30.769 4.16 0.00 41.88 4.69
4921 9527 7.706179 AAACTTGTGTTCGATTCAATGTTGAAT 59.294 29.630 18.13 18.13 45.95 2.57
4922 9528 7.009083 CAAACTTGTGTTCGATTCAATGTTGAA 59.991 33.333 10.29 10.29 42.23 2.69
4923 9529 5.749596 ACTTGTGTTCGATTCAATGTTGA 57.250 34.783 0.00 0.00 34.92 3.18
4924 9530 6.291743 CCAAACTTGTGTTCGATTCAATGTTG 60.292 38.462 0.00 0.94 34.96 3.33
4925 9531 5.748152 CCAAACTTGTGTTCGATTCAATGTT 59.252 36.000 0.00 0.00 34.96 2.71
4926 9532 5.163561 ACCAAACTTGTGTTCGATTCAATGT 60.164 36.000 0.00 0.00 34.96 2.71
4927 9533 5.280945 ACCAAACTTGTGTTCGATTCAATG 58.719 37.500 0.00 0.00 34.96 2.82
4928 9534 5.514274 ACCAAACTTGTGTTCGATTCAAT 57.486 34.783 0.00 0.00 34.96 2.57
4929 9535 4.974368 ACCAAACTTGTGTTCGATTCAA 57.026 36.364 0.00 0.00 34.96 2.69
4930 9536 6.627395 ATTACCAAACTTGTGTTCGATTCA 57.373 33.333 0.00 0.00 34.96 2.57
4931 9537 8.287503 AGTTATTACCAAACTTGTGTTCGATTC 58.712 33.333 0.00 0.00 33.39 2.52
4932 9538 8.161699 AGTTATTACCAAACTTGTGTTCGATT 57.838 30.769 0.00 0.00 33.39 3.34
4933 9539 7.739498 AGTTATTACCAAACTTGTGTTCGAT 57.261 32.000 0.00 0.00 33.39 3.59
4934 9540 7.556733 AAGTTATTACCAAACTTGTGTTCGA 57.443 32.000 0.69 0.00 43.66 3.71
4942 9548 5.782893 TGCTGCAAGTTATTACCAAACTT 57.217 34.783 0.00 0.00 45.64 2.66
4943 9549 5.476599 TGATGCTGCAAGTTATTACCAAACT 59.523 36.000 6.36 0.00 38.82 2.66
4944 9550 5.572896 GTGATGCTGCAAGTTATTACCAAAC 59.427 40.000 6.36 0.00 35.30 2.93
4945 9551 5.618863 CGTGATGCTGCAAGTTATTACCAAA 60.619 40.000 6.36 0.00 35.30 3.28
4946 9552 4.142708 CGTGATGCTGCAAGTTATTACCAA 60.143 41.667 6.36 0.00 35.30 3.67
4947 9553 3.373748 CGTGATGCTGCAAGTTATTACCA 59.626 43.478 6.36 0.00 35.30 3.25
4948 9554 3.788797 GCGTGATGCTGCAAGTTATTACC 60.789 47.826 6.36 0.00 41.73 2.85
4949 9555 3.181511 TGCGTGATGCTGCAAGTTATTAC 60.182 43.478 6.36 0.00 46.63 1.89
4950 9556 3.006247 TGCGTGATGCTGCAAGTTATTA 58.994 40.909 6.36 0.00 46.63 0.98
4951 9557 1.811965 TGCGTGATGCTGCAAGTTATT 59.188 42.857 6.36 0.00 46.63 1.40
4952 9558 1.399440 CTGCGTGATGCTGCAAGTTAT 59.601 47.619 6.36 0.00 46.63 1.89
4953 9559 0.798159 CTGCGTGATGCTGCAAGTTA 59.202 50.000 6.36 0.00 46.63 2.24
4954 9560 1.577922 CTGCGTGATGCTGCAAGTT 59.422 52.632 6.36 0.00 46.63 2.66
4955 9561 2.330372 CCTGCGTGATGCTGCAAGT 61.330 57.895 6.36 0.00 46.63 3.16
4956 9562 2.330372 ACCTGCGTGATGCTGCAAG 61.330 57.895 6.36 0.00 46.63 4.01
4957 9563 2.281692 ACCTGCGTGATGCTGCAA 60.282 55.556 6.36 0.00 46.63 4.08
4958 9564 3.051479 CACCTGCGTGATGCTGCA 61.051 61.111 4.13 4.13 46.63 4.41
4959 9565 2.743538 TCACCTGCGTGATGCTGC 60.744 61.111 0.00 0.00 44.20 5.25
4966 9572 0.391661 ATGCCTACTTCACCTGCGTG 60.392 55.000 0.00 0.00 41.72 5.34
4967 9573 0.108138 GATGCCTACTTCACCTGCGT 60.108 55.000 0.00 0.00 0.00 5.24
4968 9574 1.148157 CGATGCCTACTTCACCTGCG 61.148 60.000 0.00 0.00 0.00 5.18
4969 9575 0.108138 ACGATGCCTACTTCACCTGC 60.108 55.000 0.00 0.00 0.00 4.85
4970 9576 1.478510 AGACGATGCCTACTTCACCTG 59.521 52.381 0.00 0.00 0.00 4.00
4971 9577 1.478510 CAGACGATGCCTACTTCACCT 59.521 52.381 0.00 0.00 0.00 4.00
4972 9578 1.471676 CCAGACGATGCCTACTTCACC 60.472 57.143 0.00 0.00 0.00 4.02
4973 9579 1.204941 ACCAGACGATGCCTACTTCAC 59.795 52.381 0.00 0.00 0.00 3.18
4974 9580 1.476891 GACCAGACGATGCCTACTTCA 59.523 52.381 0.00 0.00 0.00 3.02
4975 9581 1.476891 TGACCAGACGATGCCTACTTC 59.523 52.381 0.00 0.00 0.00 3.01
4976 9582 1.557099 TGACCAGACGATGCCTACTT 58.443 50.000 0.00 0.00 0.00 2.24
4977 9583 1.557099 TTGACCAGACGATGCCTACT 58.443 50.000 0.00 0.00 0.00 2.57
4978 9584 2.380084 TTTGACCAGACGATGCCTAC 57.620 50.000 0.00 0.00 0.00 3.18
4979 9585 2.037902 TGTTTTGACCAGACGATGCCTA 59.962 45.455 0.00 0.00 0.00 3.93
4980 9586 1.202758 TGTTTTGACCAGACGATGCCT 60.203 47.619 0.00 0.00 0.00 4.75
4981 9587 1.234821 TGTTTTGACCAGACGATGCC 58.765 50.000 0.00 0.00 0.00 4.40
4982 9588 2.032799 TGTTGTTTTGACCAGACGATGC 59.967 45.455 0.00 0.00 0.00 3.91
4983 9589 3.961477 TGTTGTTTTGACCAGACGATG 57.039 42.857 0.00 0.00 0.00 3.84
4984 9590 3.315191 CCTTGTTGTTTTGACCAGACGAT 59.685 43.478 0.00 0.00 0.00 3.73
4985 9591 2.680841 CCTTGTTGTTTTGACCAGACGA 59.319 45.455 0.00 0.00 0.00 4.20
4986 9592 2.680841 TCCTTGTTGTTTTGACCAGACG 59.319 45.455 0.00 0.00 0.00 4.18
4987 9593 3.694566 ACTCCTTGTTGTTTTGACCAGAC 59.305 43.478 0.00 0.00 0.00 3.51
4988 9594 3.945285 GACTCCTTGTTGTTTTGACCAGA 59.055 43.478 0.00 0.00 0.00 3.86
4989 9595 3.947834 AGACTCCTTGTTGTTTTGACCAG 59.052 43.478 0.00 0.00 0.00 4.00
4992 9598 5.236695 GTCCTAGACTCCTTGTTGTTTTGAC 59.763 44.000 0.00 0.00 0.00 3.18
5011 9617 3.054875 TCGTGTTGGCTAGTAGAGTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
5049 9655 5.885912 ACCCTATAGCAAGTACATTTTGGTG 59.114 40.000 7.95 0.00 36.94 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.