Multiple sequence alignment - TraesCS6B01G411800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G411800 chr6B 100.000 6073 0 0 1 6073 685340164 685346236 0.000000e+00 11215
1 TraesCS6B01G411800 chr6D 96.006 2529 76 17 1587 4104 451172977 451175491 0.000000e+00 4087
2 TraesCS6B01G411800 chr6D 90.335 807 63 8 5266 6070 451178008 451178801 0.000000e+00 1044
3 TraesCS6B01G411800 chr6D 85.947 861 74 22 746 1574 451172153 451172998 0.000000e+00 876
4 TraesCS6B01G411800 chr6D 94.142 478 22 4 4623 5098 451177329 451177802 0.000000e+00 723
5 TraesCS6B01G411800 chr6D 84.698 745 65 25 5 720 451168503 451169227 0.000000e+00 699
6 TraesCS6B01G411800 chr6D 89.091 165 14 3 4174 4338 451176924 451177084 1.030000e-47 202
7 TraesCS6B01G411800 chr6A 92.484 2488 131 26 958 3419 596902067 596904524 0.000000e+00 3507
8 TraesCS6B01G411800 chr6A 94.135 1347 63 8 4734 6073 596904721 596906058 0.000000e+00 2036
9 TraesCS6B01G411800 chr6A 88.291 316 30 3 2 314 596901255 596901566 7.430000e-99 372
10 TraesCS6B01G411800 chr7D 79.128 2568 385 85 1586 4103 45229405 45226939 0.000000e+00 1633
11 TraesCS6B01G411800 chr7D 77.638 1109 173 41 3250 4326 45192112 45191047 6.730000e-169 604
12 TraesCS6B01G411800 chr7D 79.727 439 60 17 2544 2980 45061706 45061295 2.140000e-74 291
13 TraesCS6B01G411800 chr7D 83.663 202 29 4 4801 5000 45190726 45190527 2.890000e-43 187
14 TraesCS6B01G411800 chr7D 83.663 202 29 4 4801 5000 45226216 45226017 2.890000e-43 187
15 TraesCS6B01G411800 chr7D 84.559 136 15 6 1391 1526 45229553 45229424 4.940000e-26 130
16 TraesCS6B01G411800 chr4A 78.536 2446 362 82 1943 4325 656779410 656777065 0.000000e+00 1458
17 TraesCS6B01G411800 chr4A 78.290 737 81 38 2968 3655 656769808 656769102 9.480000e-108 401
18 TraesCS6B01G411800 chr4A 80.818 318 59 2 1586 1903 656779731 656779416 1.310000e-61 248
19 TraesCS6B01G411800 chr4A 76.674 463 70 23 860 1306 656780441 656780001 7.920000e-54 222
20 TraesCS6B01G411800 chr4A 85.271 129 16 2 1414 1542 656779862 656779737 4.940000e-26 130
21 TraesCS6B01G411800 chrUn 81.318 1199 166 31 1943 3131 359897149 359895999 0.000000e+00 920
22 TraesCS6B01G411800 chrUn 77.597 1232 191 44 3122 4325 274358055 274356881 0.000000e+00 667
23 TraesCS6B01G411800 chrUn 77.339 1240 186 57 3119 4325 291877126 291878303 0.000000e+00 645
24 TraesCS6B01G411800 chrUn 77.339 1240 186 57 3119 4325 295663428 295664605 0.000000e+00 645
25 TraesCS6B01G411800 chrUn 79.365 504 92 9 3825 4325 413088309 413087815 1.620000e-90 344
26 TraesCS6B01G411800 chrUn 79.095 464 85 9 3865 4325 282246305 282245851 5.910000e-80 309
27 TraesCS6B01G411800 chrUn 79.095 464 85 9 3865 4325 378521495 378521041 5.910000e-80 309
28 TraesCS6B01G411800 chrUn 81.090 312 57 2 1586 1897 275539663 275539972 1.310000e-61 248
29 TraesCS6B01G411800 chrUn 80.818 318 59 2 1586 1903 359897470 359897155 1.310000e-61 248
30 TraesCS6B01G411800 chrUn 80.818 318 59 2 1586 1903 411627482 411627167 1.310000e-61 248
31 TraesCS6B01G411800 chrUn 81.090 312 57 2 1586 1897 444818552 444818861 1.310000e-61 248
32 TraesCS6B01G411800 chrUn 76.674 463 70 23 860 1306 275538953 275539393 7.920000e-54 222
33 TraesCS6B01G411800 chrUn 76.242 463 72 24 860 1306 411628192 411627752 1.710000e-50 211
34 TraesCS6B01G411800 chrUn 86.047 129 15 2 1414 1542 275539532 275539657 1.060000e-27 135
35 TraesCS6B01G411800 chrUn 86.047 129 15 2 1414 1542 411627613 411627488 1.060000e-27 135
36 TraesCS6B01G411800 chrUn 86.047 129 15 2 1414 1542 444818421 444818546 1.060000e-27 135
37 TraesCS6B01G411800 chr7A 79.356 1211 159 50 2437 3617 47446949 47445800 0.000000e+00 767
38 TraesCS6B01G411800 chr7A 81.646 790 124 16 1586 2363 47447731 47446951 2.390000e-178 636
39 TraesCS6B01G411800 chr7A 76.876 493 75 26 860 1336 47448436 47447967 6.080000e-60 243
40 TraesCS6B01G411800 chr7A 87.931 116 11 3 1411 1526 47447862 47447750 3.820000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G411800 chr6B 685340164 685346236 6072 False 11215.000000 11215 100.000000 1 6073 1 chr6B.!!$F1 6072
1 TraesCS6B01G411800 chr6D 451168503 451178801 10298 False 1271.833333 4087 90.036500 5 6070 6 chr6D.!!$F1 6065
2 TraesCS6B01G411800 chr6A 596901255 596906058 4803 False 1971.666667 3507 91.636667 2 6073 3 chr6A.!!$F1 6071
3 TraesCS6B01G411800 chr7D 45226017 45229553 3536 True 650.000000 1633 82.450000 1391 5000 3 chr7D.!!$R3 3609
4 TraesCS6B01G411800 chr7D 45190527 45192112 1585 True 395.500000 604 80.650500 3250 5000 2 chr7D.!!$R2 1750
5 TraesCS6B01G411800 chr4A 656777065 656780441 3376 True 514.500000 1458 80.324750 860 4325 4 chr4A.!!$R2 3465
6 TraesCS6B01G411800 chr4A 656769102 656769808 706 True 401.000000 401 78.290000 2968 3655 1 chr4A.!!$R1 687
7 TraesCS6B01G411800 chrUn 274356881 274358055 1174 True 667.000000 667 77.597000 3122 4325 1 chrUn.!!$R1 1203
8 TraesCS6B01G411800 chrUn 291877126 291878303 1177 False 645.000000 645 77.339000 3119 4325 1 chrUn.!!$F1 1206
9 TraesCS6B01G411800 chrUn 295663428 295664605 1177 False 645.000000 645 77.339000 3119 4325 1 chrUn.!!$F2 1206
10 TraesCS6B01G411800 chrUn 359895999 359897470 1471 True 584.000000 920 81.068000 1586 3131 2 chrUn.!!$R5 1545
11 TraesCS6B01G411800 chrUn 275538953 275539972 1019 False 201.666667 248 81.270333 860 1897 3 chrUn.!!$F3 1037
12 TraesCS6B01G411800 chr7A 47445800 47448436 2636 True 445.000000 767 81.452250 860 3617 4 chr7A.!!$R1 2757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 347 0.103937 GATCCGTCAGCAGGAGGAAG 59.896 60.0 0.33 0.00 41.66 3.46 F
332 351 0.108424 CGTCAGCAGGAGGAAGGAAG 60.108 60.0 0.00 0.00 33.18 3.46 F
1318 4412 0.238289 GCCAGGTGAATGTGTGTTCG 59.762 55.0 0.00 0.00 0.00 3.95 F
1728 4888 0.464554 CTCCCGAGCATTTTCCCTCC 60.465 60.0 0.00 0.00 0.00 4.30 F
3616 6881 0.175760 GCCGACAAGATCAGCAGGTA 59.824 55.0 0.00 0.00 30.37 3.08 F
4106 7382 0.107945 GCTCCACTGCAAGGTAGGAG 60.108 60.0 14.71 14.71 46.71 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 4425 0.166814 GCTGTCGAAGGCACAACATC 59.833 55.000 6.07 0.00 36.97 3.06 R
2008 5188 1.338484 TGCTCTGCTCTCACAACATCC 60.338 52.381 0.00 0.00 0.00 3.51 R
3209 6452 6.573664 AATCAATTGGTCGAAATCTGACAA 57.426 33.333 5.42 0.00 38.10 3.18 R
3623 6888 0.904649 CTGCTGGGTGTGGTGATCTA 59.095 55.000 0.00 0.00 0.00 1.98 R
4630 9524 0.034380 AATGTCCAGAGCAGCTGCAT 60.034 50.000 38.24 24.58 43.50 3.96 R
5510 10566 0.036388 GCTGAAACGATCCAGGGACA 60.036 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.777526 ACAAGGAAATAATGCCCCAATTT 57.222 34.783 0.00 0.00 0.00 1.82
45 47 5.357742 AGGAAATAATGCCCCAATTTCAC 57.642 39.130 8.71 0.61 40.02 3.18
47 49 3.817709 AATAATGCCCCAATTTCACCG 57.182 42.857 0.00 0.00 0.00 4.94
61 63 0.395312 TCACCGAACTCCCCTTGAAC 59.605 55.000 0.00 0.00 0.00 3.18
62 64 0.605589 CACCGAACTCCCCTTGAACC 60.606 60.000 0.00 0.00 0.00 3.62
63 65 1.002502 CCGAACTCCCCTTGAACCC 60.003 63.158 0.00 0.00 0.00 4.11
64 66 1.002502 CGAACTCCCCTTGAACCCC 60.003 63.158 0.00 0.00 0.00 4.95
65 67 1.383019 GAACTCCCCTTGAACCCCC 59.617 63.158 0.00 0.00 0.00 5.40
107 110 3.018280 AGACCATCTGGACTGGCAT 57.982 52.632 2.55 0.00 38.71 4.40
112 115 0.545171 CATCTGGACTGGCATCAGGT 59.455 55.000 11.06 3.50 44.99 4.00
165 171 8.484575 CATCTAATGCCATATAAGTCTGGATCT 58.515 37.037 0.00 0.00 34.24 2.75
204 210 5.069383 CCAAATTGTGATATGGAATGGCAGA 59.931 40.000 0.00 0.00 34.82 4.26
223 229 1.002792 GAAAACGAACTGCCTGTCACC 60.003 52.381 0.00 0.00 0.00 4.02
304 323 4.308458 CCACCCGTCGAACAGGCA 62.308 66.667 0.00 0.00 0.00 4.75
317 336 0.977627 ACAGGCATGAGGATCCGTCA 60.978 55.000 4.84 10.94 0.00 4.35
322 341 0.249784 CATGAGGATCCGTCAGCAGG 60.250 60.000 15.97 6.13 0.00 4.85
324 343 1.039785 TGAGGATCCGTCAGCAGGAG 61.040 60.000 5.98 0.00 41.66 3.69
327 346 1.330655 GGATCCGTCAGCAGGAGGAA 61.331 60.000 0.00 0.00 41.66 3.36
328 347 0.103937 GATCCGTCAGCAGGAGGAAG 59.896 60.000 0.33 0.00 41.66 3.46
329 348 1.333636 ATCCGTCAGCAGGAGGAAGG 61.334 60.000 0.33 0.00 41.66 3.46
330 349 1.984570 CCGTCAGCAGGAGGAAGGA 60.985 63.158 0.00 0.00 35.05 3.36
331 350 1.544825 CCGTCAGCAGGAGGAAGGAA 61.545 60.000 0.00 0.00 35.05 3.36
332 351 0.108424 CGTCAGCAGGAGGAAGGAAG 60.108 60.000 0.00 0.00 33.18 3.46
351 370 1.229853 GTGGGGAAGAGGGGAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
353 372 2.368011 GGGGAAGAGGGGAAGGACG 61.368 68.421 0.00 0.00 0.00 4.79
354 373 2.585153 GGAAGAGGGGAAGGACGC 59.415 66.667 0.00 0.00 0.00 5.19
355 374 2.184579 GAAGAGGGGAAGGACGCG 59.815 66.667 3.53 3.53 0.00 6.01
356 375 4.083862 AAGAGGGGAAGGACGCGC 62.084 66.667 5.73 0.00 0.00 6.86
595 733 3.897122 GCCCTCCACACCCCACAA 61.897 66.667 0.00 0.00 0.00 3.33
596 734 2.436109 CCCTCCACACCCCACAAG 59.564 66.667 0.00 0.00 0.00 3.16
598 736 2.833913 CCTCCACACCCCACAAGCT 61.834 63.158 0.00 0.00 0.00 3.74
599 737 1.302832 CTCCACACCCCACAAGCTC 60.303 63.158 0.00 0.00 0.00 4.09
601 739 2.282462 CACACCCCACAAGCTCCC 60.282 66.667 0.00 0.00 0.00 4.30
602 740 3.953775 ACACCCCACAAGCTCCCG 61.954 66.667 0.00 0.00 0.00 5.14
603 741 4.722700 CACCCCACAAGCTCCCGG 62.723 72.222 0.00 0.00 0.00 5.73
624 771 1.126846 CAAAGCTCCTGTTTACTCGCG 59.873 52.381 0.00 0.00 0.00 5.87
625 772 1.014564 AAGCTCCTGTTTACTCGCGC 61.015 55.000 0.00 0.00 0.00 6.86
626 773 1.736645 GCTCCTGTTTACTCGCGCA 60.737 57.895 8.75 0.00 0.00 6.09
681 828 0.529992 CCCAGCCCGTTCGTAATCTC 60.530 60.000 0.00 0.00 0.00 2.75
706 853 2.283532 TGGGCCCAACCATTTCGG 60.284 61.111 26.33 0.00 42.05 4.30
711 858 2.283532 CCAACCATTTCGGGCCCA 60.284 61.111 24.92 6.15 40.22 5.36
723 870 3.747976 GGCCCAGCGCATCGTTTT 61.748 61.111 11.47 0.00 40.31 2.43
724 871 2.504681 GCCCAGCGCATCGTTTTG 60.505 61.111 11.47 0.00 37.47 2.44
725 872 2.504681 CCCAGCGCATCGTTTTGC 60.505 61.111 11.47 0.00 39.29 3.68
732 879 3.580658 GCATCGTTTTGCGTAGGAC 57.419 52.632 0.00 0.00 42.13 3.85
733 880 0.247145 GCATCGTTTTGCGTAGGACG 60.247 55.000 4.77 4.77 45.88 4.79
734 881 1.065358 CATCGTTTTGCGTAGGACGT 58.935 50.000 9.66 0.00 44.73 4.34
735 882 1.065358 ATCGTTTTGCGTAGGACGTG 58.935 50.000 0.00 0.00 44.73 4.49
770 3817 1.069090 GTCCACCACGCTTCAGACA 59.931 57.895 0.00 0.00 0.00 3.41
810 3857 2.738521 GCCGTTTCAGCGCAGAGA 60.739 61.111 11.47 0.00 0.00 3.10
887 3954 1.767088 TCTCTGGGCCTCATTGAGATG 59.233 52.381 15.36 0.52 34.46 2.90
901 3968 5.814188 TCATTGAGATGCAGTTATGTCTGTC 59.186 40.000 0.00 0.00 37.70 3.51
1014 4096 1.522580 GGCAATGGCGACTCTCTCC 60.523 63.158 0.00 0.00 42.47 3.71
1191 4285 0.325390 AGGACCTGGGCCACTACTAC 60.325 60.000 23.47 0.00 0.00 2.73
1318 4412 0.238289 GCCAGGTGAATGTGTGTTCG 59.762 55.000 0.00 0.00 0.00 3.95
1322 4416 2.032894 CAGGTGAATGTGTGTTCGTGTC 60.033 50.000 0.00 0.00 0.00 3.67
1328 4422 2.388310 TGTGTGTTCGTGTCTGGAAA 57.612 45.000 0.00 0.00 0.00 3.13
1329 4423 2.912771 TGTGTGTTCGTGTCTGGAAAT 58.087 42.857 0.00 0.00 0.00 2.17
1330 4424 3.275143 TGTGTGTTCGTGTCTGGAAATT 58.725 40.909 0.00 0.00 0.00 1.82
1331 4425 3.064682 TGTGTGTTCGTGTCTGGAAATTG 59.935 43.478 0.00 0.00 0.00 2.32
1351 4445 1.237285 ATGTTGTGCCTTCGACAGCC 61.237 55.000 3.55 0.00 35.53 4.85
1357 4451 3.044059 GCCTTCGACAGCCATGCAC 62.044 63.158 0.00 0.00 0.00 4.57
1490 4645 3.587797 TGGAACGTGAGATACCAAGAC 57.412 47.619 0.00 0.00 0.00 3.01
1491 4646 3.162666 TGGAACGTGAGATACCAAGACT 58.837 45.455 0.00 0.00 0.00 3.24
1546 4701 6.505272 GGAGTAGTGTGATTGTGATACTACC 58.495 44.000 0.00 0.00 42.76 3.18
1641 4796 7.450634 AGGATATTTGAACTTAGATGCATGCAT 59.549 33.333 32.66 32.66 39.69 3.96
1649 4804 4.934001 ACTTAGATGCATGCATATTCCTCG 59.066 41.667 32.27 19.49 36.70 4.63
1725 4885 0.541863 TCTCTCCCGAGCATTTTCCC 59.458 55.000 0.00 0.00 37.19 3.97
1728 4888 0.464554 CTCCCGAGCATTTTCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
1785 4946 5.351458 AGTGAAAGACATCCTTTTTGTTGC 58.649 37.500 0.00 0.00 44.63 4.17
1794 4955 5.296531 ACATCCTTTTTGTTGCAAATGGAAC 59.703 36.000 0.00 10.43 45.04 3.62
1836 4997 5.352293 GTCTGTATCATGAAGATGCACACAA 59.648 40.000 0.00 0.00 43.23 3.33
1877 5040 1.168714 GACATGCCTTCAGGTTGACC 58.831 55.000 0.00 0.00 37.34 4.02
1941 5117 2.514013 CGCCGCACGTCCAGTTATC 61.514 63.158 0.00 0.00 36.87 1.75
2008 5188 4.692625 CCAGAACTTGTCACAATGGTAGAG 59.307 45.833 0.28 0.00 0.00 2.43
2089 5269 2.867624 TCATTTGGAGGATGCATAGCC 58.132 47.619 0.00 1.73 35.22 3.93
2386 5573 4.088056 TGTCGGGTCCAACATAGAAAAA 57.912 40.909 0.00 0.00 0.00 1.94
2414 5601 6.819397 AAAAGGAACAAGTGTAGGAATAGC 57.181 37.500 0.00 0.00 0.00 2.97
2458 5651 8.262227 ACATTGATGCATTTATTGGACTGAAAT 58.738 29.630 0.00 0.00 0.00 2.17
2846 6041 9.710900 AAATGGTCTGGAAATAAATTCAGTTTC 57.289 29.630 0.00 0.00 39.98 2.78
3120 6361 2.166664 GCACTCGGTTCTCTACTTCCAT 59.833 50.000 0.00 0.00 0.00 3.41
3149 6392 4.826733 TCCTTAGCTGCAGATTTTTGTCAA 59.173 37.500 20.43 0.00 0.00 3.18
3230 6475 6.384258 TTTTGTCAGATTTCGACCAATTGA 57.616 33.333 7.12 0.00 32.15 2.57
3231 6476 6.573664 TTTGTCAGATTTCGACCAATTGAT 57.426 33.333 7.12 0.00 32.15 2.57
3234 6479 7.680442 TGTCAGATTTCGACCAATTGATTTA 57.320 32.000 7.12 0.00 32.15 1.40
3235 6480 7.526608 TGTCAGATTTCGACCAATTGATTTAC 58.473 34.615 7.12 0.00 32.15 2.01
3236 6481 6.682863 GTCAGATTTCGACCAATTGATTTACG 59.317 38.462 7.12 5.35 0.00 3.18
3238 6483 5.646360 AGATTTCGACCAATTGATTTACGGT 59.354 36.000 7.12 0.00 0.00 4.83
3239 6484 6.819649 AGATTTCGACCAATTGATTTACGGTA 59.180 34.615 7.12 0.00 0.00 4.02
3240 6485 6.988622 TTTCGACCAATTGATTTACGGTAT 57.011 33.333 7.12 0.00 0.00 2.73
3241 6486 6.592798 TTCGACCAATTGATTTACGGTATC 57.407 37.500 7.12 0.00 0.00 2.24
3242 6487 5.662456 TCGACCAATTGATTTACGGTATCA 58.338 37.500 7.12 0.00 0.00 2.15
3243 6488 6.285224 TCGACCAATTGATTTACGGTATCAT 58.715 36.000 7.12 0.00 32.43 2.45
3244 6489 6.201997 TCGACCAATTGATTTACGGTATCATG 59.798 38.462 7.12 0.00 32.43 3.07
3245 6490 6.201997 CGACCAATTGATTTACGGTATCATGA 59.798 38.462 7.12 0.00 32.43 3.07
3246 6491 7.095229 CGACCAATTGATTTACGGTATCATGAT 60.095 37.037 13.81 13.81 32.43 2.45
3271 6516 7.439157 TCATGACTCAAGTTCTTTTGTATGG 57.561 36.000 0.00 0.00 0.00 2.74
3323 6568 3.436704 CCGAGCAAATCTGAAGCTAACAA 59.563 43.478 0.00 0.00 39.02 2.83
3616 6881 0.175760 GCCGACAAGATCAGCAGGTA 59.824 55.000 0.00 0.00 30.37 3.08
3716 6992 5.644644 ACTACCACTTATTACACGCTGTAC 58.355 41.667 0.00 0.00 31.69 2.90
3991 7267 2.104170 GACCTCTTCGACCTCCTCAAT 58.896 52.381 0.00 0.00 0.00 2.57
4019 7295 2.513897 GCGTGCCCATGACCTACC 60.514 66.667 0.00 0.00 0.00 3.18
4069 7345 1.448013 GTTCGTGCTGCTCTACCCC 60.448 63.158 0.00 0.00 0.00 4.95
4104 7380 1.448540 CGCTCCACTGCAAGGTAGG 60.449 63.158 4.89 0.00 39.30 3.18
4105 7381 1.888436 CGCTCCACTGCAAGGTAGGA 61.888 60.000 4.89 2.09 39.30 2.94
4106 7382 0.107945 GCTCCACTGCAAGGTAGGAG 60.108 60.000 14.71 14.71 46.71 3.69
4107 7383 0.107945 CTCCACTGCAAGGTAGGAGC 60.108 60.000 4.89 0.00 39.39 4.70
4108 7384 0.835971 TCCACTGCAAGGTAGGAGCA 60.836 55.000 4.89 0.00 39.30 4.26
4112 7388 1.538876 TGCAAGGTAGGAGCAGGGT 60.539 57.895 0.00 0.00 33.75 4.34
4119 7399 1.066358 GGTAGGAGCAGGGTACACAAC 60.066 57.143 0.00 0.00 0.00 3.32
4121 7401 1.362224 AGGAGCAGGGTACACAACAT 58.638 50.000 0.00 0.00 0.00 2.71
4148 8764 9.458374 AATTTGTTGTTAATTTGTTCTACTCCG 57.542 29.630 0.00 0.00 0.00 4.63
4156 8953 4.675976 TTTGTTCTACTCCGGAAACTGA 57.324 40.909 15.79 5.39 0.00 3.41
4157 8954 3.936372 TGTTCTACTCCGGAAACTGAG 57.064 47.619 15.79 1.74 46.10 3.35
4164 8961 2.815478 CTCCGGAAACTGAGTAGATGC 58.185 52.381 5.23 0.00 36.97 3.91
4171 8968 6.316390 CCGGAAACTGAGTAGATGCTATTTTT 59.684 38.462 0.00 0.00 0.00 1.94
4172 8969 7.182761 CGGAAACTGAGTAGATGCTATTTTTG 58.817 38.462 0.00 0.00 0.00 2.44
4173 8970 7.064609 CGGAAACTGAGTAGATGCTATTTTTGA 59.935 37.037 0.00 0.00 0.00 2.69
4187 8984 8.984891 TGCTATTTTTGATTATGAACTTGTGG 57.015 30.769 0.00 0.00 0.00 4.17
4188 8985 8.801299 TGCTATTTTTGATTATGAACTTGTGGA 58.199 29.630 0.00 0.00 0.00 4.02
4189 8986 9.638239 GCTATTTTTGATTATGAACTTGTGGAA 57.362 29.630 0.00 0.00 0.00 3.53
4204 9001 2.916269 TGTGGAATGTGGATTGTAGGGA 59.084 45.455 0.00 0.00 0.00 4.20
4273 9070 4.166011 GCGCAGTTCGATGCCACC 62.166 66.667 0.30 0.00 43.49 4.61
4327 9124 2.811431 CCTTGTGAACGTAAGCCATTGA 59.189 45.455 0.00 0.00 45.62 2.57
4329 9126 3.120321 TGTGAACGTAAGCCATTGACT 57.880 42.857 0.00 0.00 45.62 3.41
4338 9135 5.067283 ACGTAAGCCATTGACTGTTTCTTTT 59.933 36.000 0.00 0.00 45.62 2.27
4341 9138 7.323656 CGTAAGCCATTGACTGTTTCTTTTAAG 59.676 37.037 0.00 0.00 0.00 1.85
4343 9140 7.112452 AGCCATTGACTGTTTCTTTTAAGTT 57.888 32.000 0.00 0.00 0.00 2.66
4344 9141 7.555965 AGCCATTGACTGTTTCTTTTAAGTTT 58.444 30.769 0.00 0.00 0.00 2.66
4345 9142 8.040727 AGCCATTGACTGTTTCTTTTAAGTTTT 58.959 29.630 0.00 0.00 0.00 2.43
4346 9143 8.328146 GCCATTGACTGTTTCTTTTAAGTTTTC 58.672 33.333 0.00 0.00 0.00 2.29
4347 9144 9.364989 CCATTGACTGTTTCTTTTAAGTTTTCA 57.635 29.630 0.00 0.00 0.00 2.69
4357 9154 9.936759 TTTCTTTTAAGTTTTCATTCAAGTGGT 57.063 25.926 0.00 0.00 0.00 4.16
4358 9155 9.936759 TTCTTTTAAGTTTTCATTCAAGTGGTT 57.063 25.926 0.00 0.00 0.00 3.67
4359 9156 9.936759 TCTTTTAAGTTTTCATTCAAGTGGTTT 57.063 25.926 0.00 0.00 0.00 3.27
4363 9160 9.810545 TTAAGTTTTCATTCAAGTGGTTTAAGG 57.189 29.630 0.00 0.00 0.00 2.69
4364 9161 7.418337 AGTTTTCATTCAAGTGGTTTAAGGT 57.582 32.000 0.00 0.00 0.00 3.50
4365 9162 8.528044 AGTTTTCATTCAAGTGGTTTAAGGTA 57.472 30.769 0.00 0.00 0.00 3.08
4366 9163 8.410912 AGTTTTCATTCAAGTGGTTTAAGGTAC 58.589 33.333 0.00 0.00 0.00 3.34
4367 9164 6.548441 TTCATTCAAGTGGTTTAAGGTACG 57.452 37.500 0.00 0.00 0.00 3.67
4368 9165 4.453136 TCATTCAAGTGGTTTAAGGTACGC 59.547 41.667 0.00 0.00 0.00 4.42
4369 9166 3.756933 TCAAGTGGTTTAAGGTACGCT 57.243 42.857 0.00 0.00 0.00 5.07
4370 9167 3.656559 TCAAGTGGTTTAAGGTACGCTC 58.343 45.455 0.00 0.00 0.00 5.03
4371 9168 2.358939 AGTGGTTTAAGGTACGCTCG 57.641 50.000 0.00 0.00 0.00 5.03
4372 9169 1.067354 AGTGGTTTAAGGTACGCTCGG 60.067 52.381 0.00 0.00 0.00 4.63
4373 9170 0.968405 TGGTTTAAGGTACGCTCGGT 59.032 50.000 0.00 0.00 0.00 4.69
4374 9171 1.344114 TGGTTTAAGGTACGCTCGGTT 59.656 47.619 0.00 0.00 0.00 4.44
4375 9172 2.224257 TGGTTTAAGGTACGCTCGGTTT 60.224 45.455 0.00 0.00 0.00 3.27
4376 9173 2.807967 GGTTTAAGGTACGCTCGGTTTT 59.192 45.455 0.00 0.00 0.00 2.43
4377 9174 3.364267 GGTTTAAGGTACGCTCGGTTTTG 60.364 47.826 0.00 0.00 0.00 2.44
4378 9175 2.083167 TAAGGTACGCTCGGTTTTGG 57.917 50.000 0.00 0.00 0.00 3.28
4379 9176 1.232621 AAGGTACGCTCGGTTTTGGC 61.233 55.000 0.00 0.00 0.00 4.52
4380 9177 2.683859 GGTACGCTCGGTTTTGGCC 61.684 63.158 0.00 0.00 0.00 5.36
4381 9178 1.670083 GTACGCTCGGTTTTGGCCT 60.670 57.895 3.32 0.00 0.00 5.19
4382 9179 1.071814 TACGCTCGGTTTTGGCCTT 59.928 52.632 3.32 0.00 0.00 4.35
4383 9180 0.321021 TACGCTCGGTTTTGGCCTTA 59.679 50.000 3.32 0.00 0.00 2.69
4384 9181 1.232621 ACGCTCGGTTTTGGCCTTAC 61.233 55.000 3.32 0.00 0.00 2.34
4385 9182 0.953960 CGCTCGGTTTTGGCCTTACT 60.954 55.000 3.32 0.00 0.00 2.24
4386 9183 1.244816 GCTCGGTTTTGGCCTTACTT 58.755 50.000 3.32 0.00 0.00 2.24
4387 9184 1.068541 GCTCGGTTTTGGCCTTACTTG 60.069 52.381 3.32 0.00 0.00 3.16
4388 9185 2.500229 CTCGGTTTTGGCCTTACTTGA 58.500 47.619 3.32 1.72 0.00 3.02
4389 9186 3.081804 CTCGGTTTTGGCCTTACTTGAT 58.918 45.455 3.32 0.00 0.00 2.57
4390 9187 3.078837 TCGGTTTTGGCCTTACTTGATC 58.921 45.455 3.32 0.00 0.00 2.92
4391 9188 2.159572 CGGTTTTGGCCTTACTTGATCG 60.160 50.000 3.32 0.00 0.00 3.69
4392 9189 3.078837 GGTTTTGGCCTTACTTGATCGA 58.921 45.455 3.32 0.00 0.00 3.59
4393 9190 3.127030 GGTTTTGGCCTTACTTGATCGAG 59.873 47.826 8.54 8.54 0.00 4.04
4394 9191 3.973206 TTTGGCCTTACTTGATCGAGA 57.027 42.857 17.27 0.00 0.00 4.04
4395 9192 3.973206 TTGGCCTTACTTGATCGAGAA 57.027 42.857 17.27 5.93 0.00 2.87
4396 9193 3.247006 TGGCCTTACTTGATCGAGAAC 57.753 47.619 17.27 1.16 0.00 3.01
4397 9194 2.565391 TGGCCTTACTTGATCGAGAACA 59.435 45.455 17.27 3.50 0.00 3.18
4398 9195 2.930682 GGCCTTACTTGATCGAGAACAC 59.069 50.000 17.27 2.16 0.00 3.32
4399 9196 2.599082 GCCTTACTTGATCGAGAACACG 59.401 50.000 17.27 1.40 0.00 4.49
4400 9197 3.672511 GCCTTACTTGATCGAGAACACGA 60.673 47.826 17.27 0.00 46.04 4.35
4401 9198 4.099120 CCTTACTTGATCGAGAACACGAG 58.901 47.826 17.27 4.92 45.22 4.18
4402 9199 4.379603 CCTTACTTGATCGAGAACACGAGT 60.380 45.833 17.27 0.00 45.22 4.18
4403 9200 3.644884 ACTTGATCGAGAACACGAGTT 57.355 42.857 17.27 0.00 45.22 3.01
4404 9201 3.978687 ACTTGATCGAGAACACGAGTTT 58.021 40.909 17.27 0.00 45.22 2.66
4405 9202 5.117355 ACTTGATCGAGAACACGAGTTTA 57.883 39.130 17.27 0.00 45.22 2.01
4406 9203 5.710984 ACTTGATCGAGAACACGAGTTTAT 58.289 37.500 17.27 0.00 45.22 1.40
4407 9204 5.573282 ACTTGATCGAGAACACGAGTTTATG 59.427 40.000 17.27 0.00 45.22 1.90
4408 9205 4.421058 TGATCGAGAACACGAGTTTATGG 58.579 43.478 0.00 0.00 45.22 2.74
4409 9206 4.157105 TGATCGAGAACACGAGTTTATGGA 59.843 41.667 0.00 0.00 45.22 3.41
4410 9207 3.829948 TCGAGAACACGAGTTTATGGAC 58.170 45.455 0.00 0.00 38.30 4.02
4411 9208 3.504906 TCGAGAACACGAGTTTATGGACT 59.495 43.478 0.00 0.00 38.30 3.85
4412 9209 4.696877 TCGAGAACACGAGTTTATGGACTA 59.303 41.667 0.00 0.00 38.30 2.59
4413 9210 5.181811 TCGAGAACACGAGTTTATGGACTAA 59.818 40.000 0.00 0.00 38.30 2.24
4414 9211 5.860182 CGAGAACACGAGTTTATGGACTAAA 59.140 40.000 0.00 0.00 38.30 1.85
4415 9212 6.183359 CGAGAACACGAGTTTATGGACTAAAC 60.183 42.308 0.00 0.67 46.41 2.01
4416 9213 5.930569 AGAACACGAGTTTATGGACTAAACC 59.069 40.000 0.00 0.00 46.98 3.27
4417 9214 4.572909 ACACGAGTTTATGGACTAAACCC 58.427 43.478 0.00 0.00 46.98 4.11
4422 9219 5.667466 GAGTTTATGGACTAAACCCGATCA 58.333 41.667 4.66 0.00 46.98 2.92
4423 9220 5.425630 AGTTTATGGACTAAACCCGATCAC 58.574 41.667 4.66 0.00 46.98 3.06
4424 9221 5.189145 AGTTTATGGACTAAACCCGATCACT 59.811 40.000 4.66 0.00 46.98 3.41
4425 9222 5.687166 TTATGGACTAAACCCGATCACTT 57.313 39.130 0.00 0.00 0.00 3.16
4426 9223 3.604875 TGGACTAAACCCGATCACTTC 57.395 47.619 0.00 0.00 0.00 3.01
4427 9224 2.235402 TGGACTAAACCCGATCACTTCC 59.765 50.000 0.00 0.00 0.00 3.46
4428 9225 2.419713 GGACTAAACCCGATCACTTCCC 60.420 54.545 0.00 0.00 0.00 3.97
4429 9226 2.235402 GACTAAACCCGATCACTTCCCA 59.765 50.000 0.00 0.00 0.00 4.37
4430 9227 2.640826 ACTAAACCCGATCACTTCCCAA 59.359 45.455 0.00 0.00 0.00 4.12
4431 9228 2.668144 AAACCCGATCACTTCCCAAA 57.332 45.000 0.00 0.00 0.00 3.28
4432 9229 2.200373 AACCCGATCACTTCCCAAAG 57.800 50.000 0.00 0.00 38.54 2.77
4433 9230 1.064825 ACCCGATCACTTCCCAAAGT 58.935 50.000 0.00 0.00 46.80 2.66
4434 9231 2.262637 ACCCGATCACTTCCCAAAGTA 58.737 47.619 0.00 0.00 43.99 2.24
4435 9232 2.844348 ACCCGATCACTTCCCAAAGTAT 59.156 45.455 0.00 0.00 43.99 2.12
4436 9233 3.265995 ACCCGATCACTTCCCAAAGTATT 59.734 43.478 0.00 0.00 43.99 1.89
4437 9234 3.627577 CCCGATCACTTCCCAAAGTATTG 59.372 47.826 0.00 0.00 43.99 1.90
4449 9246 3.652274 CAAAGTATTGGCCCAAAGTGTG 58.348 45.455 0.00 0.00 32.69 3.82
4450 9247 1.256812 AGTATTGGCCCAAAGTGTGC 58.743 50.000 0.00 0.00 0.00 4.57
4451 9248 0.965439 GTATTGGCCCAAAGTGTGCA 59.035 50.000 0.00 0.00 0.00 4.57
4452 9249 1.342819 GTATTGGCCCAAAGTGTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
4453 9250 1.058284 ATTGGCCCAAAGTGTGCAAT 58.942 45.000 0.00 0.00 0.00 3.56
4454 9251 0.835941 TTGGCCCAAAGTGTGCAATT 59.164 45.000 0.00 0.00 0.00 2.32
4455 9252 1.709578 TGGCCCAAAGTGTGCAATTA 58.290 45.000 0.00 0.00 0.00 1.40
4456 9253 2.042464 TGGCCCAAAGTGTGCAATTAA 58.958 42.857 0.00 0.00 0.00 1.40
4457 9254 2.636893 TGGCCCAAAGTGTGCAATTAAT 59.363 40.909 0.00 0.00 0.00 1.40
4458 9255 3.072184 TGGCCCAAAGTGTGCAATTAATT 59.928 39.130 0.00 0.00 0.00 1.40
4459 9256 4.071423 GGCCCAAAGTGTGCAATTAATTT 58.929 39.130 0.00 0.00 0.00 1.82
4460 9257 4.083377 GGCCCAAAGTGTGCAATTAATTTG 60.083 41.667 0.00 10.84 38.43 2.32
4461 9258 4.754114 GCCCAAAGTGTGCAATTAATTTGA 59.246 37.500 16.46 0.00 37.53 2.69
4462 9259 5.106987 GCCCAAAGTGTGCAATTAATTTGAG 60.107 40.000 16.46 8.38 37.53 3.02
4463 9260 5.990996 CCCAAAGTGTGCAATTAATTTGAGT 59.009 36.000 16.46 0.00 37.53 3.41
4464 9261 6.482973 CCCAAAGTGTGCAATTAATTTGAGTT 59.517 34.615 16.46 0.00 37.53 3.01
4465 9262 7.655328 CCCAAAGTGTGCAATTAATTTGAGTTA 59.345 33.333 16.46 0.00 37.53 2.24
4466 9263 9.039870 CCAAAGTGTGCAATTAATTTGAGTTAA 57.960 29.630 16.46 0.00 37.53 2.01
4467 9264 9.848172 CAAAGTGTGCAATTAATTTGAGTTAAC 57.152 29.630 11.88 0.00 37.53 2.01
4468 9265 7.851822 AGTGTGCAATTAATTTGAGTTAACG 57.148 32.000 0.00 0.00 37.53 3.18
4469 9266 6.861055 AGTGTGCAATTAATTTGAGTTAACGG 59.139 34.615 0.00 0.00 37.53 4.44
4470 9267 6.858993 GTGTGCAATTAATTTGAGTTAACGGA 59.141 34.615 0.00 0.00 37.53 4.69
4471 9268 6.858993 TGTGCAATTAATTTGAGTTAACGGAC 59.141 34.615 0.00 0.00 37.53 4.79
4472 9269 6.307077 GTGCAATTAATTTGAGTTAACGGACC 59.693 38.462 0.00 0.00 37.53 4.46
4473 9270 6.016192 TGCAATTAATTTGAGTTAACGGACCA 60.016 34.615 0.00 0.00 37.53 4.02
4474 9271 6.864165 GCAATTAATTTGAGTTAACGGACCAA 59.136 34.615 0.00 1.37 37.53 3.67
4475 9272 7.544217 GCAATTAATTTGAGTTAACGGACCAAT 59.456 33.333 0.00 0.00 37.53 3.16
4476 9273 8.859156 CAATTAATTTGAGTTAACGGACCAATG 58.141 33.333 0.00 0.00 37.53 2.82
4477 9274 7.747155 TTAATTTGAGTTAACGGACCAATGA 57.253 32.000 0.00 0.00 0.00 2.57
4478 9275 5.622770 ATTTGAGTTAACGGACCAATGAC 57.377 39.130 0.00 0.00 0.00 3.06
4479 9276 3.755112 TGAGTTAACGGACCAATGACA 57.245 42.857 0.00 0.00 0.00 3.58
4480 9277 3.395639 TGAGTTAACGGACCAATGACAC 58.604 45.455 0.00 0.00 0.00 3.67
4481 9278 3.181464 TGAGTTAACGGACCAATGACACA 60.181 43.478 0.00 0.00 0.00 3.72
4482 9279 4.000988 GAGTTAACGGACCAATGACACAT 58.999 43.478 0.00 0.00 0.00 3.21
4484 9281 4.825085 AGTTAACGGACCAATGACACATTT 59.175 37.500 0.00 0.00 0.00 2.32
4486 9283 2.857483 ACGGACCAATGACACATTTCA 58.143 42.857 0.00 0.00 0.00 2.69
4489 9286 4.082787 ACGGACCAATGACACATTTCATTC 60.083 41.667 0.00 0.00 43.08 2.67
4491 9288 4.220382 GGACCAATGACACATTTCATTCCA 59.780 41.667 0.00 0.00 43.08 3.53
4492 9289 5.279406 GGACCAATGACACATTTCATTCCAA 60.279 40.000 0.00 0.00 43.08 3.53
4493 9290 5.540911 ACCAATGACACATTTCATTCCAAC 58.459 37.500 0.00 0.00 43.08 3.77
4495 9292 5.406175 CCAATGACACATTTCATTCCAACAC 59.594 40.000 0.00 0.00 43.08 3.32
4502 9299 5.119588 CACATTTCATTCCAACACTTGCATC 59.880 40.000 0.00 0.00 0.00 3.91
4511 9308 6.403866 TCCAACACTTGCATCTAAACATTT 57.596 33.333 0.00 0.00 0.00 2.32
4515 9312 8.246180 CCAACACTTGCATCTAAACATTTCTAT 58.754 33.333 0.00 0.00 0.00 1.98
4516 9313 9.630098 CAACACTTGCATCTAAACATTTCTATT 57.370 29.630 0.00 0.00 0.00 1.73
4517 9314 9.846248 AACACTTGCATCTAAACATTTCTATTC 57.154 29.630 0.00 0.00 0.00 1.75
4521 9318 9.512435 CTTGCATCTAAACATTTCTATTCTTGG 57.488 33.333 0.00 0.00 0.00 3.61
4523 9320 7.615365 TGCATCTAAACATTTCTATTCTTGGGT 59.385 33.333 0.00 0.00 0.00 4.51
4544 9341 9.559732 TTGGGTTATGTATCAACTATCAAGATG 57.440 33.333 0.00 0.00 0.00 2.90
4545 9342 8.933653 TGGGTTATGTATCAACTATCAAGATGA 58.066 33.333 0.00 0.00 38.70 2.92
4546 9343 9.950496 GGGTTATGTATCAACTATCAAGATGAT 57.050 33.333 4.01 4.01 44.68 2.45
4591 9450 5.479375 AGAGATTCAAGAATGCAACCACAAT 59.521 36.000 0.00 0.00 0.00 2.71
4595 9454 4.811908 TCAAGAATGCAACCACAATCATG 58.188 39.130 0.00 0.00 0.00 3.07
4596 9455 3.241067 AGAATGCAACCACAATCATGC 57.759 42.857 0.00 0.00 39.22 4.06
4601 9460 2.273557 GCAACCACAATCATGCATTCC 58.726 47.619 0.00 0.00 38.63 3.01
4606 9465 3.701040 ACCACAATCATGCATTCCCTAAC 59.299 43.478 0.00 0.00 0.00 2.34
4608 9467 2.951642 ACAATCATGCATTCCCTAACCG 59.048 45.455 0.00 0.00 0.00 4.44
4609 9468 3.213506 CAATCATGCATTCCCTAACCGA 58.786 45.455 0.00 0.00 0.00 4.69
4611 9470 1.557371 TCATGCATTCCCTAACCGACA 59.443 47.619 0.00 0.00 0.00 4.35
4612 9471 2.172505 TCATGCATTCCCTAACCGACAT 59.827 45.455 0.00 0.00 0.00 3.06
4613 9472 2.799126 TGCATTCCCTAACCGACATT 57.201 45.000 0.00 0.00 0.00 2.71
4614 9473 3.080300 TGCATTCCCTAACCGACATTT 57.920 42.857 0.00 0.00 0.00 2.32
4629 9523 1.963515 ACATTTGCACCCCTTCTGAAC 59.036 47.619 0.00 0.00 0.00 3.18
4630 9524 1.962807 CATTTGCACCCCTTCTGAACA 59.037 47.619 0.00 0.00 0.00 3.18
4651 9545 0.675837 GCAGCTGCTCTGGACATTCA 60.676 55.000 31.33 0.00 43.06 2.57
4659 9553 5.241064 GCTGCTCTGGACATTCAATGATATT 59.759 40.000 3.79 0.00 0.00 1.28
4661 9555 7.040892 GCTGCTCTGGACATTCAATGATATTAA 60.041 37.037 3.79 0.00 0.00 1.40
4726 9663 7.254932 GCAACCATCTGAAGCTAAGGTTTATAG 60.255 40.741 0.00 0.00 37.26 1.31
4727 9664 7.676683 ACCATCTGAAGCTAAGGTTTATAGA 57.323 36.000 0.00 0.00 0.00 1.98
4728 9665 7.731054 ACCATCTGAAGCTAAGGTTTATAGAG 58.269 38.462 0.00 0.00 0.00 2.43
4729 9666 6.648725 CCATCTGAAGCTAAGGTTTATAGAGC 59.351 42.308 0.00 0.00 0.00 4.09
4730 9667 7.441017 CATCTGAAGCTAAGGTTTATAGAGCT 58.559 38.462 0.00 0.00 45.23 4.09
4826 9847 4.473520 ATCTTCCCCGGCGCAGTG 62.474 66.667 10.83 0.00 0.00 3.66
5040 10061 1.965754 CTACAGAGCTGTGAGGGGGC 61.966 65.000 19.13 0.00 44.63 5.80
5077 10098 4.536765 CCAGCCTTCAACCCTTAACATAT 58.463 43.478 0.00 0.00 0.00 1.78
5079 10100 5.531287 CCAGCCTTCAACCCTTAACATATAC 59.469 44.000 0.00 0.00 0.00 1.47
5104 10125 7.466805 CAGTACTACTAGTAATGTTGCACGTA 58.533 38.462 13.35 0.00 40.66 3.57
5120 10141 5.269459 GCACGTAGCACTAAATATGGATG 57.731 43.478 5.30 0.00 44.79 3.51
5121 10142 4.750098 GCACGTAGCACTAAATATGGATGT 59.250 41.667 5.30 0.00 44.79 3.06
5122 10143 5.924254 GCACGTAGCACTAAATATGGATGTA 59.076 40.000 5.30 0.00 44.79 2.29
5193 10215 8.882736 TCTACATGATTATACTGCACAAAAGTG 58.117 33.333 0.00 0.00 0.00 3.16
5194 10216 7.452880 ACATGATTATACTGCACAAAAGTGT 57.547 32.000 0.00 0.00 39.07 3.55
5223 10245 6.310467 CGTGCTCATTTACAAACTCTTAGCTA 59.690 38.462 0.00 0.00 0.00 3.32
5225 10247 6.310467 TGCTCATTTACAAACTCTTAGCTACG 59.690 38.462 0.00 0.00 0.00 3.51
5369 10425 1.607178 CCACCTTGGCCATCAGCAA 60.607 57.895 6.09 0.00 46.50 3.91
5388 10444 0.567182 ATGGCTCCTCCCTGAGATCT 59.433 55.000 0.00 0.00 34.11 2.75
5456 10512 1.201647 CTCCTGTAACGACGACACCAT 59.798 52.381 0.00 0.00 0.00 3.55
5457 10513 1.068125 TCCTGTAACGACGACACCATG 60.068 52.381 0.00 0.00 0.00 3.66
5493 10549 0.251297 CTTTGGACAGGGACATGCCA 60.251 55.000 8.20 0.00 38.95 4.92
5510 10566 1.003355 CAAGGTCGTCACCCATGCT 60.003 57.895 0.00 0.00 45.12 3.79
5529 10585 0.036388 TGTCCCTGGATCGTTTCAGC 60.036 55.000 0.00 0.00 0.00 4.26
5534 10590 2.238847 CTGGATCGTTTCAGCCCGGA 62.239 60.000 0.73 0.00 0.00 5.14
5677 10733 2.474359 CACAAAGTGAGCTCAAGACTCG 59.526 50.000 20.19 9.00 36.94 4.18
5684 10740 0.037790 AGCTCAAGACTCGGTTCAGC 60.038 55.000 0.00 0.00 0.00 4.26
5735 10791 3.376546 CCAGCTGATTCAGGTTAAGAAGC 59.623 47.826 17.39 0.00 40.40 3.86
5749 10805 1.278238 AGAAGCGTCCGAAAATAGCG 58.722 50.000 0.00 0.00 0.00 4.26
5864 10920 1.648467 GCATCGCCCTTTCTGGTGTC 61.648 60.000 0.00 0.00 37.20 3.67
5888 10944 1.586564 GTCGAGGGAAGATGCGTCG 60.587 63.158 7.49 7.49 45.15 5.12
5909 10965 2.816087 GCTGATCTCTGCAAGGTTTGAA 59.184 45.455 4.41 0.00 40.06 2.69
6000 11059 5.299949 AGAATAATGTCAGCACGCATATCA 58.700 37.500 0.00 0.00 0.00 2.15
6002 11061 3.891056 AATGTCAGCACGCATATCATG 57.109 42.857 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.406400 CCTTGTTTGTTTATTTCCACTGGACA 60.406 38.462 0.00 0.00 0.00 4.02
1 2 5.983118 CCTTGTTTGTTTATTTCCACTGGAC 59.017 40.000 0.00 0.00 0.00 4.02
2 3 5.894393 TCCTTGTTTGTTTATTTCCACTGGA 59.106 36.000 0.00 0.00 0.00 3.86
3 4 6.155475 TCCTTGTTTGTTTATTTCCACTGG 57.845 37.500 0.00 0.00 0.00 4.00
42 43 0.395312 GTTCAAGGGGAGTTCGGTGA 59.605 55.000 0.00 0.00 0.00 4.02
45 47 1.002502 GGGTTCAAGGGGAGTTCGG 60.003 63.158 0.00 0.00 0.00 4.30
47 49 1.383019 GGGGGTTCAAGGGGAGTTC 59.617 63.158 0.00 0.00 0.00 3.01
165 171 6.778069 TCACAATTTGGGTGTAAGAAACCATA 59.222 34.615 0.00 0.00 39.65 2.74
204 210 1.021968 GGTGACAGGCAGTTCGTTTT 58.978 50.000 0.00 0.00 0.00 2.43
215 221 1.815003 GGAGCAAATCTTGGTGACAGG 59.185 52.381 0.00 0.00 44.54 4.00
223 229 3.765511 TGGATTCCAAGGAGCAAATCTTG 59.234 43.478 1.94 0.00 39.83 3.02
304 323 0.397675 TCCTGCTGACGGATCCTCAT 60.398 55.000 10.75 0.00 0.00 2.90
317 336 1.204113 CCACCTTCCTTCCTCCTGCT 61.204 60.000 0.00 0.00 0.00 4.24
322 341 0.621082 CTTCCCCACCTTCCTTCCTC 59.379 60.000 0.00 0.00 0.00 3.71
324 343 0.621082 CTCTTCCCCACCTTCCTTCC 59.379 60.000 0.00 0.00 0.00 3.46
327 346 1.229984 CCCTCTTCCCCACCTTCCT 60.230 63.158 0.00 0.00 0.00 3.36
328 347 2.309504 CCCCTCTTCCCCACCTTCC 61.310 68.421 0.00 0.00 0.00 3.46
329 348 0.845102 TTCCCCTCTTCCCCACCTTC 60.845 60.000 0.00 0.00 0.00 3.46
330 349 0.846870 CTTCCCCTCTTCCCCACCTT 60.847 60.000 0.00 0.00 0.00 3.50
331 350 1.229984 CTTCCCCTCTTCCCCACCT 60.230 63.158 0.00 0.00 0.00 4.00
332 351 2.309504 CCTTCCCCTCTTCCCCACC 61.310 68.421 0.00 0.00 0.00 4.61
526 545 2.444140 CGAGGTGGGGGAGTAGGG 60.444 72.222 0.00 0.00 0.00 3.53
527 546 1.757340 GACGAGGTGGGGGAGTAGG 60.757 68.421 0.00 0.00 0.00 3.18
548 686 1.063183 GGAAGGAGGAGGATGATGGG 58.937 60.000 0.00 0.00 0.00 4.00
555 693 2.042843 GGCGAGGAAGGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
556 694 3.532155 CGGCGAGGAAGGAGGAGG 61.532 72.222 0.00 0.00 0.00 4.30
557 695 1.801309 GATCGGCGAGGAAGGAGGAG 61.801 65.000 17.22 0.00 0.00 3.69
596 734 4.416738 AGGAGCTTTGCCGGGAGC 62.417 66.667 2.18 0.00 44.14 4.70
598 736 2.351924 AAACAGGAGCTTTGCCGGGA 62.352 55.000 2.18 0.00 0.00 5.14
599 737 0.608035 TAAACAGGAGCTTTGCCGGG 60.608 55.000 2.18 0.00 0.00 5.73
601 739 1.464997 GAGTAAACAGGAGCTTTGCCG 59.535 52.381 0.00 0.00 0.00 5.69
602 740 1.464997 CGAGTAAACAGGAGCTTTGCC 59.535 52.381 0.00 0.00 0.00 4.52
603 741 1.135944 GCGAGTAAACAGGAGCTTTGC 60.136 52.381 0.00 0.00 0.00 3.68
605 743 1.429463 CGCGAGTAAACAGGAGCTTT 58.571 50.000 0.00 0.00 0.00 3.51
706 853 3.747976 AAAACGATGCGCTGGGCC 61.748 61.111 14.44 0.00 42.61 5.80
748 2413 1.284982 CTGAAGCGTGGTGGACTTCG 61.285 60.000 0.00 0.00 42.17 3.79
790 3837 3.793144 CTGCGCTGAAACGGCTCC 61.793 66.667 9.73 0.00 32.89 4.70
791 3838 2.734673 CTCTGCGCTGAAACGGCTC 61.735 63.158 18.03 0.00 32.89 4.70
792 3839 2.715532 TTCTCTGCGCTGAAACGGCT 62.716 55.000 18.03 0.00 32.89 5.52
810 3857 0.704664 GGTCATGGTTTCCCCCTCTT 59.295 55.000 0.00 0.00 0.00 2.85
856 3923 1.080230 CCCAGAGAGTGTGAGTGCG 60.080 63.158 0.00 0.00 0.00 5.34
887 3954 1.345176 GCGCGACAGACATAACTGC 59.655 57.895 12.10 0.00 41.06 4.40
1011 4093 2.284921 TGTGCCAGGGAGAGGGAG 60.285 66.667 0.00 0.00 0.00 4.30
1014 4096 3.721706 GGGTGTGCCAGGGAGAGG 61.722 72.222 0.00 0.00 36.17 3.69
1038 4120 3.210012 TTGTTGCCAGAGGGGGAGC 62.210 63.158 0.00 0.00 38.72 4.70
1318 4412 3.983344 GCACAACATCAATTTCCAGACAC 59.017 43.478 0.00 0.00 0.00 3.67
1322 4416 3.947910 AGGCACAACATCAATTTCCAG 57.052 42.857 0.00 0.00 0.00 3.86
1328 4422 2.485426 CTGTCGAAGGCACAACATCAAT 59.515 45.455 0.00 0.00 36.97 2.57
1329 4423 1.872952 CTGTCGAAGGCACAACATCAA 59.127 47.619 0.00 0.00 36.97 2.57
1330 4424 1.511850 CTGTCGAAGGCACAACATCA 58.488 50.000 0.00 0.00 36.97 3.07
1331 4425 0.166814 GCTGTCGAAGGCACAACATC 59.833 55.000 6.07 0.00 36.97 3.06
1351 4445 5.991328 ATTCAGGTATAAAGACGTGCATG 57.009 39.130 3.82 3.82 35.63 4.06
1357 4451 5.114081 ACCGGAAATTCAGGTATAAAGACG 58.886 41.667 15.94 0.00 43.12 4.18
1490 4645 9.921637 TGCCATAAATTTTTCCAAGTAAACTAG 57.078 29.630 0.00 0.00 0.00 2.57
1571 4726 9.383519 TGCATAGTGTATTCTCCTTTTAGAAAG 57.616 33.333 0.00 0.00 38.90 2.62
1572 4727 9.905713 ATGCATAGTGTATTCTCCTTTTAGAAA 57.094 29.630 0.00 0.00 38.90 2.52
1573 4728 9.905713 AATGCATAGTGTATTCTCCTTTTAGAA 57.094 29.630 0.00 0.00 39.71 2.10
1575 4730 9.941664 CAAATGCATAGTGTATTCTCCTTTTAG 57.058 33.333 0.00 0.00 31.48 1.85
1591 4746 5.870433 TGCAAATGAAGGAACAAATGCATAG 59.130 36.000 0.00 0.00 39.02 2.23
1641 4796 2.711311 CGGTCGCGACGAGGAATA 59.289 61.111 30.99 0.00 36.23 1.75
1725 4885 3.683802 AGCTCAGAATTTCACTTGGGAG 58.316 45.455 0.00 0.00 0.00 4.30
1728 4888 9.912634 TTAAAATAAGCTCAGAATTTCACTTGG 57.087 29.630 0.00 0.00 0.00 3.61
1759 4920 7.260603 CAACAAAAAGGATGTCTTTCACTCTT 58.739 34.615 0.00 0.00 44.30 2.85
1785 4946 6.529125 CCGAGAGAAATGAAATGTTCCATTTG 59.471 38.462 6.91 0.00 41.45 2.32
1794 4955 2.932614 AGACGCCGAGAGAAATGAAATG 59.067 45.455 0.00 0.00 0.00 2.32
1877 5040 3.809279 GGGATCTTTTGTTTTTGCCACAG 59.191 43.478 0.00 0.00 0.00 3.66
1930 5098 8.480643 AATCTTTAGAACTTGATAACTGGACG 57.519 34.615 0.00 0.00 0.00 4.79
1985 5165 4.641396 TCTACCATTGTGACAAGTTCTGG 58.359 43.478 12.73 12.73 0.00 3.86
2008 5188 1.338484 TGCTCTGCTCTCACAACATCC 60.338 52.381 0.00 0.00 0.00 3.51
2386 5573 7.654022 TTCCTACACTTGTTCCTTTTTCAAT 57.346 32.000 0.00 0.00 0.00 2.57
2670 5865 8.143193 AGATACATAGAAACAAGATGCAGAGAG 58.857 37.037 0.00 0.00 0.00 3.20
3120 6361 6.594788 AAAATCTGCAGCTAAGGATGAAAA 57.405 33.333 9.47 0.00 0.00 2.29
3209 6452 6.573664 AATCAATTGGTCGAAATCTGACAA 57.426 33.333 5.42 0.00 38.10 3.18
3240 6485 7.991084 AAAGAACTTGAGTCATGAATCATGA 57.009 32.000 32.84 20.85 46.84 3.07
3241 6486 8.080417 ACAAAAGAACTTGAGTCATGAATCATG 58.920 33.333 27.61 27.61 42.60 3.07
3242 6487 8.174733 ACAAAAGAACTTGAGTCATGAATCAT 57.825 30.769 25.00 11.77 35.22 2.45
3243 6488 7.572523 ACAAAAGAACTTGAGTCATGAATCA 57.427 32.000 21.23 21.23 33.21 2.57
3244 6489 9.552114 CATACAAAAGAACTTGAGTCATGAATC 57.448 33.333 16.08 16.08 0.00 2.52
3245 6490 8.517878 CCATACAAAAGAACTTGAGTCATGAAT 58.482 33.333 12.65 0.00 0.00 2.57
3246 6491 7.502226 ACCATACAAAAGAACTTGAGTCATGAA 59.498 33.333 12.65 0.00 0.00 2.57
3323 6568 5.562298 TTTGGGTAACTTCTTCTGTAGCT 57.438 39.130 0.00 0.00 0.00 3.32
3616 6881 3.105283 GGGTGTGGTGATCTAGGTTACT 58.895 50.000 0.00 0.00 0.00 2.24
3623 6888 0.904649 CTGCTGGGTGTGGTGATCTA 59.095 55.000 0.00 0.00 0.00 1.98
3704 6980 9.251792 CCTGTTATTATTATGTACAGCGTGTAA 57.748 33.333 0.33 0.00 34.21 2.41
3705 6981 7.868922 CCCTGTTATTATTATGTACAGCGTGTA 59.131 37.037 0.33 0.00 35.93 2.90
3707 6983 6.147164 CCCCTGTTATTATTATGTACAGCGTG 59.853 42.308 0.33 0.00 35.93 5.34
3708 6984 6.228258 CCCCTGTTATTATTATGTACAGCGT 58.772 40.000 0.33 0.00 35.93 5.07
3709 6985 5.121768 GCCCCTGTTATTATTATGTACAGCG 59.878 44.000 0.33 0.00 35.93 5.18
3716 6992 5.391950 GCATCGTGCCCCTGTTATTATTATG 60.392 44.000 0.00 0.00 37.42 1.90
3983 7259 1.153289 CGCCCCACAGATTGAGGAG 60.153 63.158 0.00 0.00 28.90 3.69
4019 7295 2.802667 GCAGCTCGTACATGCACCG 61.803 63.158 9.31 0.00 39.75 4.94
4069 7345 2.932234 CGCCTCCCTATAGCCACCG 61.932 68.421 0.00 0.00 0.00 4.94
4104 7380 5.183140 ACAAATTATGTTGTGTACCCTGCTC 59.817 40.000 0.00 0.00 40.06 4.26
4105 7381 5.076873 ACAAATTATGTTGTGTACCCTGCT 58.923 37.500 0.00 0.00 40.06 4.24
4106 7382 5.385509 ACAAATTATGTTGTGTACCCTGC 57.614 39.130 0.00 0.00 40.06 4.85
4138 8754 3.938289 ACTCAGTTTCCGGAGTAGAAC 57.062 47.619 3.34 6.43 43.15 3.01
4147 8763 6.910536 AAAATAGCATCTACTCAGTTTCCG 57.089 37.500 0.00 0.00 0.00 4.30
4148 8764 8.268850 TCAAAAATAGCATCTACTCAGTTTCC 57.731 34.615 0.00 0.00 0.00 3.13
4162 8959 8.801299 TCCACAAGTTCATAATCAAAAATAGCA 58.199 29.630 0.00 0.00 0.00 3.49
4171 8968 6.244654 TCCACATTCCACAAGTTCATAATCA 58.755 36.000 0.00 0.00 0.00 2.57
4172 8969 6.757897 TCCACATTCCACAAGTTCATAATC 57.242 37.500 0.00 0.00 0.00 1.75
4173 8970 7.178983 ACAATCCACATTCCACAAGTTCATAAT 59.821 33.333 0.00 0.00 0.00 1.28
4177 8974 4.214310 ACAATCCACATTCCACAAGTTCA 58.786 39.130 0.00 0.00 0.00 3.18
4179 8976 4.766891 CCTACAATCCACATTCCACAAGTT 59.233 41.667 0.00 0.00 0.00 2.66
4180 8977 4.335416 CCTACAATCCACATTCCACAAGT 58.665 43.478 0.00 0.00 0.00 3.16
4181 8978 3.696051 CCCTACAATCCACATTCCACAAG 59.304 47.826 0.00 0.00 0.00 3.16
4182 8979 3.332187 TCCCTACAATCCACATTCCACAA 59.668 43.478 0.00 0.00 0.00 3.33
4185 8982 3.459828 TCTCCCTACAATCCACATTCCA 58.540 45.455 0.00 0.00 0.00 3.53
4186 8983 4.164221 TCTTCTCCCTACAATCCACATTCC 59.836 45.833 0.00 0.00 0.00 3.01
4187 8984 5.359194 TCTTCTCCCTACAATCCACATTC 57.641 43.478 0.00 0.00 0.00 2.67
4188 8985 4.384647 GCTCTTCTCCCTACAATCCACATT 60.385 45.833 0.00 0.00 0.00 2.71
4189 8986 3.135530 GCTCTTCTCCCTACAATCCACAT 59.864 47.826 0.00 0.00 0.00 3.21
4228 9025 1.079750 GACGAACTCAGCCTGGTCC 60.080 63.158 0.00 0.00 0.00 4.46
4309 9106 2.805671 CAGTCAATGGCTTACGTTCACA 59.194 45.455 0.00 0.00 0.00 3.58
4338 9135 8.973182 ACCTTAAACCACTTGAATGAAAACTTA 58.027 29.630 0.00 0.00 0.00 2.24
4341 9138 7.377662 CGTACCTTAAACCACTTGAATGAAAAC 59.622 37.037 0.00 0.00 0.00 2.43
4343 9140 6.513720 GCGTACCTTAAACCACTTGAATGAAA 60.514 38.462 0.00 0.00 0.00 2.69
4344 9141 5.049267 GCGTACCTTAAACCACTTGAATGAA 60.049 40.000 0.00 0.00 0.00 2.57
4345 9142 4.453136 GCGTACCTTAAACCACTTGAATGA 59.547 41.667 0.00 0.00 0.00 2.57
4346 9143 4.454504 AGCGTACCTTAAACCACTTGAATG 59.545 41.667 0.00 0.00 0.00 2.67
4347 9144 4.648651 AGCGTACCTTAAACCACTTGAAT 58.351 39.130 0.00 0.00 0.00 2.57
4348 9145 4.060205 GAGCGTACCTTAAACCACTTGAA 58.940 43.478 0.00 0.00 0.00 2.69
4349 9146 3.656559 GAGCGTACCTTAAACCACTTGA 58.343 45.455 0.00 0.00 0.00 3.02
4350 9147 2.410730 CGAGCGTACCTTAAACCACTTG 59.589 50.000 0.00 0.00 0.00 3.16
4351 9148 2.611224 CCGAGCGTACCTTAAACCACTT 60.611 50.000 0.00 0.00 0.00 3.16
4352 9149 1.067354 CCGAGCGTACCTTAAACCACT 60.067 52.381 0.00 0.00 0.00 4.00
4353 9150 1.337167 ACCGAGCGTACCTTAAACCAC 60.337 52.381 0.00 0.00 0.00 4.16
4354 9151 0.968405 ACCGAGCGTACCTTAAACCA 59.032 50.000 0.00 0.00 0.00 3.67
4355 9152 2.084610 AACCGAGCGTACCTTAAACC 57.915 50.000 0.00 0.00 0.00 3.27
4356 9153 3.364267 CCAAAACCGAGCGTACCTTAAAC 60.364 47.826 0.00 0.00 0.00 2.01
4357 9154 2.807392 CCAAAACCGAGCGTACCTTAAA 59.193 45.455 0.00 0.00 0.00 1.52
4358 9155 2.415776 CCAAAACCGAGCGTACCTTAA 58.584 47.619 0.00 0.00 0.00 1.85
4359 9156 1.940752 GCCAAAACCGAGCGTACCTTA 60.941 52.381 0.00 0.00 0.00 2.69
4360 9157 1.232621 GCCAAAACCGAGCGTACCTT 61.233 55.000 0.00 0.00 0.00 3.50
4361 9158 1.670083 GCCAAAACCGAGCGTACCT 60.670 57.895 0.00 0.00 0.00 3.08
4362 9159 2.683859 GGCCAAAACCGAGCGTACC 61.684 63.158 0.00 0.00 0.00 3.34
4363 9160 1.232621 AAGGCCAAAACCGAGCGTAC 61.233 55.000 5.01 0.00 33.69 3.67
4364 9161 0.321021 TAAGGCCAAAACCGAGCGTA 59.679 50.000 5.01 0.00 33.69 4.42
4365 9162 1.071814 TAAGGCCAAAACCGAGCGT 59.928 52.632 5.01 0.00 33.69 5.07
4366 9163 0.953960 AGTAAGGCCAAAACCGAGCG 60.954 55.000 5.01 0.00 33.69 5.03
4367 9164 1.068541 CAAGTAAGGCCAAAACCGAGC 60.069 52.381 5.01 0.00 33.69 5.03
4368 9165 2.500229 TCAAGTAAGGCCAAAACCGAG 58.500 47.619 5.01 0.00 33.69 4.63
4369 9166 2.642154 TCAAGTAAGGCCAAAACCGA 57.358 45.000 5.01 0.00 33.69 4.69
4370 9167 2.159572 CGATCAAGTAAGGCCAAAACCG 60.160 50.000 5.01 0.00 33.69 4.44
4371 9168 3.078837 TCGATCAAGTAAGGCCAAAACC 58.921 45.455 5.01 0.00 0.00 3.27
4372 9169 4.000988 TCTCGATCAAGTAAGGCCAAAAC 58.999 43.478 5.01 0.00 0.00 2.43
4373 9170 4.280436 TCTCGATCAAGTAAGGCCAAAA 57.720 40.909 5.01 0.00 0.00 2.44
4374 9171 3.973206 TCTCGATCAAGTAAGGCCAAA 57.027 42.857 5.01 0.00 0.00 3.28
4375 9172 3.007506 TGTTCTCGATCAAGTAAGGCCAA 59.992 43.478 5.01 0.00 0.00 4.52
4376 9173 2.565391 TGTTCTCGATCAAGTAAGGCCA 59.435 45.455 5.01 0.00 0.00 5.36
4377 9174 2.930682 GTGTTCTCGATCAAGTAAGGCC 59.069 50.000 0.00 0.00 0.00 5.19
4378 9175 2.599082 CGTGTTCTCGATCAAGTAAGGC 59.401 50.000 0.00 0.00 0.00 4.35
4379 9176 4.092771 TCGTGTTCTCGATCAAGTAAGG 57.907 45.455 0.00 0.00 34.85 2.69
4380 9177 4.724303 ACTCGTGTTCTCGATCAAGTAAG 58.276 43.478 0.00 0.00 39.12 2.34
4381 9178 4.761235 ACTCGTGTTCTCGATCAAGTAA 57.239 40.909 0.00 0.00 39.12 2.24
4382 9179 4.761235 AACTCGTGTTCTCGATCAAGTA 57.239 40.909 0.00 0.00 39.12 2.24
4383 9180 3.644884 AACTCGTGTTCTCGATCAAGT 57.355 42.857 0.00 0.00 39.12 3.16
4384 9181 5.004821 CCATAAACTCGTGTTCTCGATCAAG 59.995 44.000 2.94 0.00 39.12 3.02
4385 9182 4.862574 CCATAAACTCGTGTTCTCGATCAA 59.137 41.667 2.94 0.00 39.12 2.57
4386 9183 4.157105 TCCATAAACTCGTGTTCTCGATCA 59.843 41.667 2.94 0.00 39.12 2.92
4387 9184 4.499758 GTCCATAAACTCGTGTTCTCGATC 59.500 45.833 2.94 0.00 39.12 3.69
4388 9185 4.158025 AGTCCATAAACTCGTGTTCTCGAT 59.842 41.667 2.94 0.00 39.12 3.59
4389 9186 3.504906 AGTCCATAAACTCGTGTTCTCGA 59.495 43.478 2.94 0.00 34.96 4.04
4390 9187 3.834610 AGTCCATAAACTCGTGTTCTCG 58.165 45.455 2.94 0.00 34.96 4.04
4391 9188 7.046862 GTTTAGTCCATAAACTCGTGTTCTC 57.953 40.000 2.94 0.00 46.55 2.87
4402 9199 5.687166 AGTGATCGGGTTTAGTCCATAAA 57.313 39.130 0.00 0.00 0.00 1.40
4403 9200 5.395990 GGAAGTGATCGGGTTTAGTCCATAA 60.396 44.000 0.00 0.00 0.00 1.90
4404 9201 4.100498 GGAAGTGATCGGGTTTAGTCCATA 59.900 45.833 0.00 0.00 0.00 2.74
4405 9202 3.118371 GGAAGTGATCGGGTTTAGTCCAT 60.118 47.826 0.00 0.00 0.00 3.41
4406 9203 2.235402 GGAAGTGATCGGGTTTAGTCCA 59.765 50.000 0.00 0.00 0.00 4.02
4407 9204 2.419713 GGGAAGTGATCGGGTTTAGTCC 60.420 54.545 0.00 0.00 0.00 3.85
4408 9205 2.235402 TGGGAAGTGATCGGGTTTAGTC 59.765 50.000 0.00 0.00 0.00 2.59
4409 9206 2.262637 TGGGAAGTGATCGGGTTTAGT 58.737 47.619 0.00 0.00 0.00 2.24
4410 9207 3.343941 TTGGGAAGTGATCGGGTTTAG 57.656 47.619 0.00 0.00 0.00 1.85
4411 9208 3.073356 ACTTTGGGAAGTGATCGGGTTTA 59.927 43.478 0.00 0.00 44.27 2.01
4412 9209 2.158519 ACTTTGGGAAGTGATCGGGTTT 60.159 45.455 0.00 0.00 44.27 3.27
4413 9210 1.423921 ACTTTGGGAAGTGATCGGGTT 59.576 47.619 0.00 0.00 44.27 4.11
4414 9211 1.064825 ACTTTGGGAAGTGATCGGGT 58.935 50.000 0.00 0.00 44.27 5.28
4415 9212 3.560636 ATACTTTGGGAAGTGATCGGG 57.439 47.619 2.25 0.00 45.46 5.14
4416 9213 4.882671 CAATACTTTGGGAAGTGATCGG 57.117 45.455 2.25 0.00 45.46 4.18
4428 9225 3.652274 CACACTTTGGGCCAATACTTTG 58.348 45.455 21.65 14.40 0.00 2.77
4429 9226 2.037121 GCACACTTTGGGCCAATACTTT 59.963 45.455 21.65 0.69 41.97 2.66
4430 9227 1.618343 GCACACTTTGGGCCAATACTT 59.382 47.619 21.65 2.26 41.97 2.24
4431 9228 1.256812 GCACACTTTGGGCCAATACT 58.743 50.000 21.65 2.14 41.97 2.12
4432 9229 3.812577 GCACACTTTGGGCCAATAC 57.187 52.632 21.65 2.45 41.97 1.89
4439 9236 5.990996 ACTCAAATTAATTGCACACTTTGGG 59.009 36.000 0.39 0.00 38.98 4.12
4440 9237 7.481275 AACTCAAATTAATTGCACACTTTGG 57.519 32.000 0.39 0.00 38.98 3.28
4441 9238 9.848172 GTTAACTCAAATTAATTGCACACTTTG 57.152 29.630 0.39 0.00 38.98 2.77
4442 9239 8.751335 CGTTAACTCAAATTAATTGCACACTTT 58.249 29.630 0.39 0.00 38.98 2.66
4443 9240 7.381139 CCGTTAACTCAAATTAATTGCACACTT 59.619 33.333 0.39 0.00 38.98 3.16
4444 9241 6.861055 CCGTTAACTCAAATTAATTGCACACT 59.139 34.615 0.39 0.00 38.98 3.55
4445 9242 6.858993 TCCGTTAACTCAAATTAATTGCACAC 59.141 34.615 0.39 0.00 38.98 3.82
4446 9243 6.858993 GTCCGTTAACTCAAATTAATTGCACA 59.141 34.615 0.39 0.00 38.98 4.57
4447 9244 6.307077 GGTCCGTTAACTCAAATTAATTGCAC 59.693 38.462 0.39 0.00 38.98 4.57
4448 9245 6.016192 TGGTCCGTTAACTCAAATTAATTGCA 60.016 34.615 0.39 0.00 38.98 4.08
4449 9246 6.383415 TGGTCCGTTAACTCAAATTAATTGC 58.617 36.000 0.39 0.00 38.98 3.56
4450 9247 8.859156 CATTGGTCCGTTAACTCAAATTAATTG 58.141 33.333 0.39 0.00 40.58 2.32
4451 9248 8.798402 TCATTGGTCCGTTAACTCAAATTAATT 58.202 29.630 3.71 0.00 0.00 1.40
4452 9249 8.241367 GTCATTGGTCCGTTAACTCAAATTAAT 58.759 33.333 3.71 0.00 0.00 1.40
4453 9250 7.228906 TGTCATTGGTCCGTTAACTCAAATTAA 59.771 33.333 3.71 0.00 0.00 1.40
4454 9251 6.711194 TGTCATTGGTCCGTTAACTCAAATTA 59.289 34.615 3.71 0.00 0.00 1.40
4455 9252 5.533154 TGTCATTGGTCCGTTAACTCAAATT 59.467 36.000 3.71 0.00 0.00 1.82
4456 9253 5.048991 GTGTCATTGGTCCGTTAACTCAAAT 60.049 40.000 3.71 0.00 0.00 2.32
4457 9254 4.273969 GTGTCATTGGTCCGTTAACTCAAA 59.726 41.667 3.71 0.00 0.00 2.69
4458 9255 3.810941 GTGTCATTGGTCCGTTAACTCAA 59.189 43.478 3.71 3.94 0.00 3.02
4459 9256 3.181464 TGTGTCATTGGTCCGTTAACTCA 60.181 43.478 3.71 0.00 0.00 3.41
4460 9257 3.395639 TGTGTCATTGGTCCGTTAACTC 58.604 45.455 3.71 0.00 0.00 3.01
4461 9258 3.478857 TGTGTCATTGGTCCGTTAACT 57.521 42.857 3.71 0.00 0.00 2.24
4462 9259 4.759516 AATGTGTCATTGGTCCGTTAAC 57.240 40.909 0.00 0.00 0.00 2.01
4463 9260 4.822350 TGAAATGTGTCATTGGTCCGTTAA 59.178 37.500 0.00 0.00 0.00 2.01
4464 9261 4.390264 TGAAATGTGTCATTGGTCCGTTA 58.610 39.130 0.00 0.00 0.00 3.18
4465 9262 3.218453 TGAAATGTGTCATTGGTCCGTT 58.782 40.909 0.00 0.00 0.00 4.44
4466 9263 2.857483 TGAAATGTGTCATTGGTCCGT 58.143 42.857 0.00 0.00 0.00 4.69
4467 9264 4.414852 GAATGAAATGTGTCATTGGTCCG 58.585 43.478 3.22 0.00 45.98 4.79
4468 9265 4.220382 TGGAATGAAATGTGTCATTGGTCC 59.780 41.667 3.22 0.30 45.98 4.46
4469 9266 5.389859 TGGAATGAAATGTGTCATTGGTC 57.610 39.130 3.22 0.00 45.98 4.02
4470 9267 5.070180 TGTTGGAATGAAATGTGTCATTGGT 59.930 36.000 3.22 0.00 45.98 3.67
4471 9268 5.406175 GTGTTGGAATGAAATGTGTCATTGG 59.594 40.000 3.22 0.00 45.98 3.16
4472 9269 6.218019 AGTGTTGGAATGAAATGTGTCATTG 58.782 36.000 3.22 0.00 45.98 2.82
4474 9271 6.218019 CAAGTGTTGGAATGAAATGTGTCAT 58.782 36.000 0.00 0.00 40.01 3.06
4475 9272 5.590145 CAAGTGTTGGAATGAAATGTGTCA 58.410 37.500 0.00 0.00 0.00 3.58
4476 9273 4.445385 GCAAGTGTTGGAATGAAATGTGTC 59.555 41.667 0.00 0.00 0.00 3.67
4477 9274 4.141981 TGCAAGTGTTGGAATGAAATGTGT 60.142 37.500 0.00 0.00 0.00 3.72
4478 9275 4.370049 TGCAAGTGTTGGAATGAAATGTG 58.630 39.130 0.00 0.00 0.00 3.21
4479 9276 4.669206 TGCAAGTGTTGGAATGAAATGT 57.331 36.364 0.00 0.00 0.00 2.71
4480 9277 5.475719 AGATGCAAGTGTTGGAATGAAATG 58.524 37.500 0.00 0.00 33.68 2.32
4481 9278 5.733620 AGATGCAAGTGTTGGAATGAAAT 57.266 34.783 0.00 0.00 33.68 2.17
4482 9279 6.647334 TTAGATGCAAGTGTTGGAATGAAA 57.353 33.333 0.00 0.00 33.68 2.69
4484 9281 5.534278 TGTTTAGATGCAAGTGTTGGAATGA 59.466 36.000 0.00 0.00 33.68 2.57
4486 9283 6.594788 ATGTTTAGATGCAAGTGTTGGAAT 57.405 33.333 0.00 0.00 33.68 3.01
4489 9286 6.449698 AGAAATGTTTAGATGCAAGTGTTGG 58.550 36.000 0.00 0.00 0.00 3.77
4491 9288 9.846248 GAATAGAAATGTTTAGATGCAAGTGTT 57.154 29.630 0.00 0.00 0.00 3.32
4492 9289 9.236006 AGAATAGAAATGTTTAGATGCAAGTGT 57.764 29.630 0.00 0.00 0.00 3.55
4495 9292 9.512435 CCAAGAATAGAAATGTTTAGATGCAAG 57.488 33.333 0.00 0.00 0.00 4.01
4515 9312 9.613428 CTTGATAGTTGATACATAACCCAAGAA 57.387 33.333 0.00 0.00 35.21 2.52
4516 9313 8.988060 TCTTGATAGTTGATACATAACCCAAGA 58.012 33.333 0.00 0.00 37.27 3.02
4517 9314 9.784531 ATCTTGATAGTTGATACATAACCCAAG 57.215 33.333 0.00 0.00 34.92 3.61
4530 9327 9.716531 GGATACATTCATCATCTTGATAGTTGA 57.283 33.333 0.00 0.00 34.28 3.18
4537 9334 9.342308 GGTTTTAGGATACATTCATCATCTTGA 57.658 33.333 0.00 0.00 41.41 3.02
4538 9335 8.285394 CGGTTTTAGGATACATTCATCATCTTG 58.715 37.037 0.00 0.00 41.41 3.02
4539 9336 7.993183 ACGGTTTTAGGATACATTCATCATCTT 59.007 33.333 0.00 0.00 41.41 2.40
4544 9341 8.882415 TCTAACGGTTTTAGGATACATTCATC 57.118 34.615 0.00 0.00 41.41 2.92
4545 9342 8.701895 TCTCTAACGGTTTTAGGATACATTCAT 58.298 33.333 0.00 0.00 41.41 2.57
4546 9343 8.070034 TCTCTAACGGTTTTAGGATACATTCA 57.930 34.615 0.00 0.00 41.41 2.57
4547 9344 9.543783 AATCTCTAACGGTTTTAGGATACATTC 57.456 33.333 0.00 0.00 41.41 2.67
4548 9345 9.543783 GAATCTCTAACGGTTTTAGGATACATT 57.456 33.333 0.00 0.00 41.41 2.71
4551 9348 8.937634 TTGAATCTCTAACGGTTTTAGGATAC 57.062 34.615 0.00 0.00 0.00 2.24
4558 9355 6.206634 TGCATTCTTGAATCTCTAACGGTTTT 59.793 34.615 0.00 0.00 0.00 2.43
4591 9450 1.557371 TGTCGGTTAGGGAATGCATGA 59.443 47.619 0.00 0.00 0.00 3.07
4595 9454 2.479560 GCAAATGTCGGTTAGGGAATGC 60.480 50.000 0.00 0.00 0.00 3.56
4596 9455 2.752354 TGCAAATGTCGGTTAGGGAATG 59.248 45.455 0.00 0.00 0.00 2.67
4597 9456 2.752903 GTGCAAATGTCGGTTAGGGAAT 59.247 45.455 0.00 0.00 0.00 3.01
4601 9460 0.808755 GGGTGCAAATGTCGGTTAGG 59.191 55.000 0.00 0.00 0.00 2.69
4606 9465 0.609131 AGAAGGGGTGCAAATGTCGG 60.609 55.000 0.00 0.00 0.00 4.79
4608 9467 1.909700 TCAGAAGGGGTGCAAATGTC 58.090 50.000 0.00 0.00 0.00 3.06
4609 9468 1.963515 GTTCAGAAGGGGTGCAAATGT 59.036 47.619 0.00 0.00 0.00 2.71
4611 9470 2.380064 TGTTCAGAAGGGGTGCAAAT 57.620 45.000 0.00 0.00 0.00 2.32
4612 9471 1.962807 CATGTTCAGAAGGGGTGCAAA 59.037 47.619 0.00 0.00 0.00 3.68
4613 9472 1.619654 CATGTTCAGAAGGGGTGCAA 58.380 50.000 0.00 0.00 0.00 4.08
4614 9473 0.895100 GCATGTTCAGAAGGGGTGCA 60.895 55.000 0.00 0.00 0.00 4.57
4629 9523 0.748367 ATGTCCAGAGCAGCTGCATG 60.748 55.000 38.24 32.42 43.50 4.06
4630 9524 0.034380 AATGTCCAGAGCAGCTGCAT 60.034 50.000 38.24 24.58 43.50 3.96
4651 9545 4.357918 AGGGCACGCTCTTAATATCATT 57.642 40.909 0.00 0.00 0.00 2.57
4753 9771 2.269940 ACCTTAGCCTCAGTTCATGGT 58.730 47.619 0.00 0.00 0.00 3.55
5040 10061 0.961753 GCTGGGACTTCAGTTTTGGG 59.038 55.000 0.00 0.00 37.12 4.12
5077 10098 7.119699 ACGTGCAACATTACTAGTAGTACTGTA 59.880 37.037 25.24 13.03 41.70 2.74
5079 10100 6.320171 ACGTGCAACATTACTAGTAGTACTG 58.680 40.000 20.44 20.44 37.38 2.74
5193 10215 0.878416 TTGTAAATGAGCACGCCCAC 59.122 50.000 0.00 0.00 0.00 4.61
5194 10216 1.268352 GTTTGTAAATGAGCACGCCCA 59.732 47.619 0.00 0.00 0.00 5.36
5195 10217 1.539827 AGTTTGTAAATGAGCACGCCC 59.460 47.619 0.00 0.00 0.00 6.13
5223 10245 4.796231 CCGCCGCAGTTAGCTCGT 62.796 66.667 0.00 0.00 42.61 4.18
5261 10311 0.386113 GGAGGAGTATCTGCCGACAC 59.614 60.000 0.00 0.00 33.73 3.67
5262 10312 2.808598 GGAGGAGTATCTGCCGACA 58.191 57.895 0.00 0.00 33.73 4.35
5369 10425 0.567182 AGATCTCAGGGAGGAGCCAT 59.433 55.000 0.00 0.00 38.95 4.40
5388 10444 8.463930 AGGTCATATTCTCAAAGTTTGTCAAA 57.536 30.769 15.08 8.56 0.00 2.69
5456 10512 0.400213 AGAAGCACCGATTTCACCCA 59.600 50.000 0.00 0.00 0.00 4.51
5457 10513 1.534729 AAGAAGCACCGATTTCACCC 58.465 50.000 0.00 0.00 0.00 4.61
5493 10549 1.003355 CAGCATGGGTGACGACCTT 60.003 57.895 0.00 0.00 42.66 3.50
5510 10566 0.036388 GCTGAAACGATCCAGGGACA 60.036 55.000 0.00 0.00 0.00 4.02
5529 10585 1.078426 GATGGTCAAGGTGTCCGGG 60.078 63.158 0.00 0.00 0.00 5.73
5534 10590 0.401738 CCAGTGGATGGTCAAGGTGT 59.598 55.000 1.68 0.00 44.91 4.16
5677 10733 4.642429 TCTTTCCTGAACTAAGCTGAACC 58.358 43.478 0.00 0.00 0.00 3.62
5684 10740 4.686554 CCGACTGTTCTTTCCTGAACTAAG 59.313 45.833 8.52 2.27 44.63 2.18
5706 10762 0.179051 CTGAATCAGCTGGCTCTCCC 60.179 60.000 15.13 0.00 0.00 4.30
5735 10791 0.928229 CCCTTCGCTATTTTCGGACG 59.072 55.000 0.00 0.00 0.00 4.79
5749 10805 0.040067 ACGTGACGTAACGACCCTTC 60.040 55.000 31.52 0.00 46.49 3.46
5764 10820 4.209288 GGCTTATAATGACAGCAGTACGTG 59.791 45.833 0.00 0.00 35.05 4.49
5888 10944 2.430465 TCAAACCTTGCAGAGATCAGC 58.570 47.619 0.00 0.00 0.00 4.26
5909 10965 1.283321 GAGAGAAAGGGCCTGGATGTT 59.717 52.381 6.92 0.00 0.00 2.71
6000 11059 7.039504 ACAAATATTCAGTTTTGTCTGAGGCAT 60.040 33.333 0.00 0.00 40.99 4.40
6002 11061 6.681777 ACAAATATTCAGTTTTGTCTGAGGC 58.318 36.000 0.00 0.00 40.99 4.70
6003 11062 8.971321 CAAACAAATATTCAGTTTTGTCTGAGG 58.029 33.333 13.35 1.47 43.33 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.