Multiple sequence alignment - TraesCS6B01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G411400 chr6B 100.000 3388 0 0 1 3388 685303037 685306424 0.000000e+00 6257.0
1 TraesCS6B01G411400 chr6A 94.637 2965 118 16 448 3388 596888503 596891450 0.000000e+00 4556.0
2 TraesCS6B01G411400 chr6A 91.489 423 33 3 9 430 596784446 596784866 2.270000e-161 579.0
3 TraesCS6B01G411400 chr6D 91.995 2973 132 19 448 3388 451155039 451157937 0.000000e+00 4074.0
4 TraesCS6B01G411400 chr6D 91.822 428 34 1 9 436 451120838 451121264 2.250000e-166 595.0
5 TraesCS6B01G411400 chr6D 88.889 54 5 1 140 192 289756206 289756153 7.850000e-07 65.8
6 TraesCS6B01G411400 chr7D 85.492 193 24 3 444 634 204685622 204685432 7.420000e-47 198.0
7 TraesCS6B01G411400 chr4A 90.714 140 11 1 497 634 699943018 699942879 5.770000e-43 185.0
8 TraesCS6B01G411400 chr3B 83.770 191 28 2 444 634 547345831 547346018 9.660000e-41 178.0
9 TraesCS6B01G411400 chr3B 88.679 53 5 1 140 191 810897115 810897063 2.820000e-06 63.9
10 TraesCS6B01G411400 chr5B 87.838 148 16 1 489 634 69312435 69312582 4.490000e-39 172.0
11 TraesCS6B01G411400 chr5B 87.162 148 17 1 489 634 41381107 41381254 2.090000e-37 167.0
12 TraesCS6B01G411400 chr2B 87.755 147 16 1 489 633 482701544 482701398 1.620000e-38 171.0
13 TraesCS6B01G411400 chr7B 88.489 139 14 1 498 634 530893384 530893246 2.090000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G411400 chr6B 685303037 685306424 3387 False 6257 6257 100.000 1 3388 1 chr6B.!!$F1 3387
1 TraesCS6B01G411400 chr6A 596888503 596891450 2947 False 4556 4556 94.637 448 3388 1 chr6A.!!$F2 2940
2 TraesCS6B01G411400 chr6D 451155039 451157937 2898 False 4074 4074 91.995 448 3388 1 chr6D.!!$F2 2940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.035152 TTGGCTGGTGAAGATGCGAT 60.035 50.0 0.00 0.0 0.00 4.58 F
272 273 0.103026 TGGTGAAGATGCGATCTCGG 59.897 55.0 1.34 0.0 39.08 4.63 F
273 274 0.103208 GGTGAAGATGCGATCTCGGT 59.897 55.0 1.34 0.0 39.08 4.69 F
395 396 0.177373 GCGGGTACTTGGAGTAAGGG 59.823 60.0 0.00 0.0 40.84 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 1170 1.248785 TATATCCTCACCTCGCCGCC 61.249 60.000 0.0 0.00 0.0 6.13 R
2223 2244 1.376942 CTGGACTGAGGCCTGCAAG 60.377 63.158 12.0 7.68 0.0 4.01 R
2224 2245 2.116983 GACTGGACTGAGGCCTGCAA 62.117 60.000 12.0 0.00 0.0 4.08 R
2402 2456 5.682862 GCGTTTCCTTGCACTCATATTAATG 59.317 40.000 0.0 0.00 0.0 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.773323 GCAAATGCCCATAGATTACCTC 57.227 45.455 0.00 0.00 34.31 3.85
29 30 3.189287 GCAAATGCCCATAGATTACCTCG 59.811 47.826 0.00 0.00 34.31 4.63
30 31 4.641396 CAAATGCCCATAGATTACCTCGA 58.359 43.478 0.00 0.00 0.00 4.04
31 32 4.974645 AATGCCCATAGATTACCTCGAA 57.025 40.909 0.00 0.00 0.00 3.71
32 33 5.505181 AATGCCCATAGATTACCTCGAAT 57.495 39.130 0.00 0.00 0.00 3.34
33 34 4.271696 TGCCCATAGATTACCTCGAATG 57.728 45.455 0.00 0.00 0.00 2.67
34 35 3.007940 TGCCCATAGATTACCTCGAATGG 59.992 47.826 2.15 2.15 39.85 3.16
35 36 4.207891 CCCATAGATTACCTCGAATGGG 57.792 50.000 12.01 12.01 46.83 4.00
36 37 4.207891 CCATAGATTACCTCGAATGGGG 57.792 50.000 1.29 0.00 38.04 4.96
37 38 3.583086 CCATAGATTACCTCGAATGGGGT 59.417 47.826 0.00 0.00 38.04 4.95
38 39 4.322801 CCATAGATTACCTCGAATGGGGTC 60.323 50.000 0.00 0.00 38.04 4.46
39 40 3.047695 AGATTACCTCGAATGGGGTCT 57.952 47.619 0.00 0.00 37.07 3.85
40 41 2.700897 AGATTACCTCGAATGGGGTCTG 59.299 50.000 0.00 0.00 37.07 3.51
41 42 1.946984 TTACCTCGAATGGGGTCTGT 58.053 50.000 0.00 0.00 37.07 3.41
42 43 1.481871 TACCTCGAATGGGGTCTGTC 58.518 55.000 0.00 0.00 37.07 3.51
43 44 1.265454 ACCTCGAATGGGGTCTGTCC 61.265 60.000 0.00 0.00 0.00 4.02
44 45 1.141881 CTCGAATGGGGTCTGTCCG 59.858 63.158 0.00 0.00 37.00 4.79
45 46 1.304630 TCGAATGGGGTCTGTCCGA 60.305 57.895 0.00 0.00 37.00 4.55
46 47 1.141881 CGAATGGGGTCTGTCCGAG 59.858 63.158 0.00 0.00 37.00 4.63
47 48 1.320344 CGAATGGGGTCTGTCCGAGA 61.320 60.000 0.00 0.00 37.00 4.04
48 49 0.461961 GAATGGGGTCTGTCCGAGAG 59.538 60.000 0.00 0.00 37.00 3.20
49 50 1.617947 AATGGGGTCTGTCCGAGAGC 61.618 60.000 0.00 0.00 46.82 4.09
52 53 2.750637 GGTCTGTCCGAGAGCCGA 60.751 66.667 0.00 0.00 42.51 5.54
53 54 2.766400 GGTCTGTCCGAGAGCCGAG 61.766 68.421 0.00 0.00 42.51 4.63
54 55 2.041686 GTCTGTCCGAGAGCCGAGT 61.042 63.158 0.00 0.00 41.76 4.18
55 56 2.041115 TCTGTCCGAGAGCCGAGTG 61.041 63.158 0.00 0.00 41.76 3.51
56 57 3.057547 CTGTCCGAGAGCCGAGTGG 62.058 68.421 0.00 0.00 41.76 4.00
57 58 2.750637 GTCCGAGAGCCGAGTGGA 60.751 66.667 0.00 0.00 41.76 4.02
58 59 2.035155 TCCGAGAGCCGAGTGGAA 59.965 61.111 0.00 0.00 41.76 3.53
59 60 2.046864 TCCGAGAGCCGAGTGGAAG 61.047 63.158 0.00 0.00 41.76 3.46
60 61 2.202676 CGAGAGCCGAGTGGAAGC 60.203 66.667 0.00 0.00 41.76 3.86
61 62 2.973899 GAGAGCCGAGTGGAAGCA 59.026 61.111 0.00 0.00 37.49 3.91
62 63 1.153667 GAGAGCCGAGTGGAAGCAG 60.154 63.158 0.00 0.00 37.49 4.24
63 64 2.125350 GAGCCGAGTGGAAGCAGG 60.125 66.667 0.00 0.00 37.49 4.85
64 65 2.604686 AGCCGAGTGGAAGCAGGA 60.605 61.111 0.00 0.00 37.49 3.86
65 66 2.125350 GCCGAGTGGAAGCAGGAG 60.125 66.667 0.00 0.00 37.49 3.69
66 67 2.948720 GCCGAGTGGAAGCAGGAGT 61.949 63.158 0.00 0.00 37.49 3.85
67 68 1.674057 CCGAGTGGAAGCAGGAGTT 59.326 57.895 0.00 0.00 37.49 3.01
68 69 0.895530 CCGAGTGGAAGCAGGAGTTA 59.104 55.000 0.00 0.00 37.49 2.24
69 70 1.482593 CCGAGTGGAAGCAGGAGTTAT 59.517 52.381 0.00 0.00 37.49 1.89
70 71 2.693591 CCGAGTGGAAGCAGGAGTTATA 59.306 50.000 0.00 0.00 37.49 0.98
71 72 3.491104 CCGAGTGGAAGCAGGAGTTATAC 60.491 52.174 0.00 0.00 37.49 1.47
72 73 3.491104 CGAGTGGAAGCAGGAGTTATACC 60.491 52.174 0.00 0.00 0.00 2.73
73 74 3.450904 AGTGGAAGCAGGAGTTATACCA 58.549 45.455 0.00 0.00 0.00 3.25
74 75 3.452627 AGTGGAAGCAGGAGTTATACCAG 59.547 47.826 0.00 0.00 0.00 4.00
75 76 3.197983 GTGGAAGCAGGAGTTATACCAGT 59.802 47.826 0.00 0.00 0.00 4.00
76 77 4.404715 GTGGAAGCAGGAGTTATACCAGTA 59.595 45.833 0.00 0.00 0.00 2.74
77 78 5.070580 GTGGAAGCAGGAGTTATACCAGTAT 59.929 44.000 0.00 0.00 0.00 2.12
78 79 5.304614 TGGAAGCAGGAGTTATACCAGTATC 59.695 44.000 0.00 0.00 0.00 2.24
79 80 5.279556 GGAAGCAGGAGTTATACCAGTATCC 60.280 48.000 0.00 0.00 0.00 2.59
80 81 4.816126 AGCAGGAGTTATACCAGTATCCA 58.184 43.478 0.00 0.00 0.00 3.41
81 82 4.835615 AGCAGGAGTTATACCAGTATCCAG 59.164 45.833 0.00 0.00 0.00 3.86
82 83 4.561734 GCAGGAGTTATACCAGTATCCAGC 60.562 50.000 0.00 0.00 0.00 4.85
83 84 4.835615 CAGGAGTTATACCAGTATCCAGCT 59.164 45.833 0.00 0.00 0.00 4.24
84 85 6.010850 CAGGAGTTATACCAGTATCCAGCTA 58.989 44.000 0.00 0.00 0.00 3.32
85 86 6.493802 CAGGAGTTATACCAGTATCCAGCTAA 59.506 42.308 0.00 0.00 0.00 3.09
86 87 6.722129 AGGAGTTATACCAGTATCCAGCTAAG 59.278 42.308 0.00 0.00 0.00 2.18
87 88 6.071278 GGAGTTATACCAGTATCCAGCTAAGG 60.071 46.154 0.00 0.00 0.00 2.69
88 89 5.246429 AGTTATACCAGTATCCAGCTAAGGC 59.754 44.000 0.00 0.00 39.06 4.35
89 90 1.132500 ACCAGTATCCAGCTAAGGCC 58.868 55.000 0.00 0.00 39.73 5.19
90 91 1.131638 CCAGTATCCAGCTAAGGCCA 58.868 55.000 5.01 0.00 39.73 5.36
91 92 1.490490 CCAGTATCCAGCTAAGGCCAA 59.510 52.381 5.01 0.00 39.73 4.52
92 93 2.565841 CAGTATCCAGCTAAGGCCAAC 58.434 52.381 5.01 0.00 39.73 3.77
93 94 1.490910 AGTATCCAGCTAAGGCCAACC 59.509 52.381 5.01 0.00 39.73 3.77
94 95 1.211949 GTATCCAGCTAAGGCCAACCA 59.788 52.381 5.01 0.00 39.06 3.67
95 96 0.929244 ATCCAGCTAAGGCCAACCAT 59.071 50.000 5.01 0.00 39.06 3.55
96 97 0.704076 TCCAGCTAAGGCCAACCATT 59.296 50.000 5.01 0.00 39.06 3.16
97 98 1.077005 TCCAGCTAAGGCCAACCATTT 59.923 47.619 5.01 0.00 39.06 2.32
98 99 2.310349 TCCAGCTAAGGCCAACCATTTA 59.690 45.455 5.01 0.00 39.06 1.40
99 100 2.689983 CCAGCTAAGGCCAACCATTTAG 59.310 50.000 5.01 3.99 39.06 1.85
100 101 2.099756 CAGCTAAGGCCAACCATTTAGC 59.900 50.000 19.43 19.43 44.43 3.09
101 102 1.409064 GCTAAGGCCAACCATTTAGCC 59.591 52.381 17.29 0.00 40.98 3.93
102 103 5.481590 AGCTAAGGCCAACCATTTAGCCA 62.482 47.826 22.02 0.00 44.85 4.75
103 104 6.895795 AGCTAAGGCCAACCATTTAGCCAA 62.896 45.833 22.02 0.00 44.85 4.52
106 107 3.348647 GGCCAACCATTTAGCCAAATT 57.651 42.857 0.00 0.00 45.07 1.82
107 108 3.270027 GGCCAACCATTTAGCCAAATTC 58.730 45.455 0.00 0.00 45.07 2.17
108 109 3.270027 GCCAACCATTTAGCCAAATTCC 58.730 45.455 0.00 0.00 31.82 3.01
109 110 3.520569 CCAACCATTTAGCCAAATTCCG 58.479 45.455 0.00 0.00 31.82 4.30
110 111 3.056179 CCAACCATTTAGCCAAATTCCGT 60.056 43.478 0.00 0.00 31.82 4.69
111 112 3.866883 ACCATTTAGCCAAATTCCGTG 57.133 42.857 0.00 0.00 31.82 4.94
112 113 2.495669 ACCATTTAGCCAAATTCCGTGG 59.504 45.455 0.00 0.00 39.33 4.94
113 114 2.757868 CCATTTAGCCAAATTCCGTGGA 59.242 45.455 0.00 0.00 38.54 4.02
114 115 3.428862 CCATTTAGCCAAATTCCGTGGAC 60.429 47.826 0.00 0.00 38.54 4.02
115 116 2.570415 TTAGCCAAATTCCGTGGACA 57.430 45.000 0.00 0.00 38.54 4.02
116 117 1.816074 TAGCCAAATTCCGTGGACAC 58.184 50.000 0.00 0.00 38.54 3.67
117 118 6.157585 ATTTAGCCAAATTCCGTGGACACG 62.158 45.833 17.21 17.21 41.59 4.49
127 128 3.532501 TGGACACGAGTGCACTGA 58.467 55.556 27.27 0.00 41.46 3.41
128 129 1.363807 TGGACACGAGTGCACTGAG 59.636 57.895 27.27 20.02 41.46 3.35
129 130 1.364171 GGACACGAGTGCACTGAGT 59.636 57.895 27.27 20.72 35.94 3.41
130 131 0.596577 GGACACGAGTGCACTGAGTA 59.403 55.000 27.27 0.00 35.94 2.59
131 132 1.401670 GGACACGAGTGCACTGAGTAG 60.402 57.143 27.27 18.42 35.94 2.57
132 133 0.039074 ACACGAGTGCACTGAGTAGC 60.039 55.000 27.27 7.57 0.00 3.58
133 134 0.039165 CACGAGTGCACTGAGTAGCA 60.039 55.000 27.27 5.77 38.65 3.49
140 141 3.961480 TGCACTGAGTAGCACAAGTAT 57.039 42.857 5.77 0.00 35.51 2.12
141 142 3.588955 TGCACTGAGTAGCACAAGTATG 58.411 45.455 5.77 0.00 35.51 2.39
142 143 3.006859 TGCACTGAGTAGCACAAGTATGT 59.993 43.478 5.77 0.00 41.61 2.29
143 144 3.614616 GCACTGAGTAGCACAAGTATGTC 59.385 47.826 2.85 0.00 37.82 3.06
144 145 4.619394 GCACTGAGTAGCACAAGTATGTCT 60.619 45.833 2.85 0.00 37.82 3.41
145 146 5.098893 CACTGAGTAGCACAAGTATGTCTC 58.901 45.833 0.00 0.00 37.82 3.36
146 147 4.142578 ACTGAGTAGCACAAGTATGTCTCG 60.143 45.833 0.00 0.00 37.82 4.04
147 148 4.007659 TGAGTAGCACAAGTATGTCTCGA 58.992 43.478 0.00 0.00 37.82 4.04
148 149 4.095036 TGAGTAGCACAAGTATGTCTCGAG 59.905 45.833 5.93 5.93 37.82 4.04
149 150 4.262617 AGTAGCACAAGTATGTCTCGAGA 58.737 43.478 12.08 12.08 37.82 4.04
150 151 3.495670 AGCACAAGTATGTCTCGAGAC 57.504 47.619 33.76 33.76 44.97 3.36
161 162 3.840890 GTCTCGAGACACTGATTGACT 57.159 47.619 34.97 0.00 44.18 3.41
162 163 3.753842 GTCTCGAGACACTGATTGACTC 58.246 50.000 34.97 7.81 44.18 3.36
163 164 3.438781 GTCTCGAGACACTGATTGACTCT 59.561 47.826 34.97 0.00 42.77 3.24
164 165 3.687212 TCTCGAGACACTGATTGACTCTC 59.313 47.826 12.08 0.00 42.77 3.20
165 166 3.680490 TCGAGACACTGATTGACTCTCT 58.320 45.455 1.61 0.00 42.77 3.10
166 167 4.075682 TCGAGACACTGATTGACTCTCTT 58.924 43.478 1.61 0.00 42.77 2.85
167 168 4.520874 TCGAGACACTGATTGACTCTCTTT 59.479 41.667 1.61 0.00 42.77 2.52
168 169 4.620609 CGAGACACTGATTGACTCTCTTTG 59.379 45.833 1.61 0.00 42.77 2.77
169 170 5.537188 GAGACACTGATTGACTCTCTTTGT 58.463 41.667 0.00 0.00 41.99 2.83
170 171 5.537188 AGACACTGATTGACTCTCTTTGTC 58.463 41.667 0.00 0.00 35.21 3.18
171 172 5.304101 AGACACTGATTGACTCTCTTTGTCT 59.696 40.000 0.00 0.00 35.63 3.41
172 173 5.295950 ACACTGATTGACTCTCTTTGTCTG 58.704 41.667 0.00 0.00 35.63 3.51
173 174 5.163364 ACACTGATTGACTCTCTTTGTCTGT 60.163 40.000 0.00 0.00 35.63 3.41
174 175 5.404968 CACTGATTGACTCTCTTTGTCTGTC 59.595 44.000 0.00 0.00 35.63 3.51
175 176 4.887748 TGATTGACTCTCTTTGTCTGTCC 58.112 43.478 0.00 0.00 35.63 4.02
176 177 4.344968 TGATTGACTCTCTTTGTCTGTCCA 59.655 41.667 0.00 0.00 35.63 4.02
177 178 4.963318 TTGACTCTCTTTGTCTGTCCAT 57.037 40.909 0.00 0.00 35.63 3.41
178 179 4.527509 TGACTCTCTTTGTCTGTCCATC 57.472 45.455 0.00 0.00 35.63 3.51
179 180 3.259374 TGACTCTCTTTGTCTGTCCATCC 59.741 47.826 0.00 0.00 35.63 3.51
180 181 2.232452 ACTCTCTTTGTCTGTCCATCCG 59.768 50.000 0.00 0.00 0.00 4.18
181 182 2.232452 CTCTCTTTGTCTGTCCATCCGT 59.768 50.000 0.00 0.00 0.00 4.69
182 183 2.632996 TCTCTTTGTCTGTCCATCCGTT 59.367 45.455 0.00 0.00 0.00 4.44
183 184 3.071023 TCTCTTTGTCTGTCCATCCGTTT 59.929 43.478 0.00 0.00 0.00 3.60
184 185 3.138304 TCTTTGTCTGTCCATCCGTTTG 58.862 45.455 0.00 0.00 0.00 2.93
185 186 1.234821 TTGTCTGTCCATCCGTTTGC 58.765 50.000 0.00 0.00 0.00 3.68
186 187 0.948623 TGTCTGTCCATCCGTTTGCG 60.949 55.000 0.00 0.00 37.95 4.85
199 200 2.821546 CGTTTGCGGATGATAGGAAGA 58.178 47.619 0.00 0.00 0.00 2.87
200 201 2.797156 CGTTTGCGGATGATAGGAAGAG 59.203 50.000 0.00 0.00 0.00 2.85
201 202 3.134458 GTTTGCGGATGATAGGAAGAGG 58.866 50.000 0.00 0.00 0.00 3.69
202 203 2.088104 TGCGGATGATAGGAAGAGGT 57.912 50.000 0.00 0.00 0.00 3.85
203 204 1.964223 TGCGGATGATAGGAAGAGGTC 59.036 52.381 0.00 0.00 0.00 3.85
204 205 1.964223 GCGGATGATAGGAAGAGGTCA 59.036 52.381 0.00 0.00 0.00 4.02
205 206 2.564947 GCGGATGATAGGAAGAGGTCAT 59.435 50.000 0.00 0.00 34.23 3.06
206 207 3.616076 GCGGATGATAGGAAGAGGTCATG 60.616 52.174 0.00 0.00 31.86 3.07
207 208 3.576118 CGGATGATAGGAAGAGGTCATGT 59.424 47.826 0.00 0.00 31.86 3.21
208 209 4.039730 CGGATGATAGGAAGAGGTCATGTT 59.960 45.833 0.00 0.00 31.86 2.71
209 210 5.546526 GGATGATAGGAAGAGGTCATGTTC 58.453 45.833 0.00 0.00 31.86 3.18
210 211 5.070981 GGATGATAGGAAGAGGTCATGTTCA 59.929 44.000 0.00 0.00 32.83 3.18
211 212 6.408548 GGATGATAGGAAGAGGTCATGTTCAA 60.409 42.308 0.00 0.00 32.83 2.69
212 213 5.734720 TGATAGGAAGAGGTCATGTTCAAC 58.265 41.667 0.00 0.00 32.83 3.18
213 214 5.485353 TGATAGGAAGAGGTCATGTTCAACT 59.515 40.000 0.00 0.00 32.83 3.16
214 215 4.278975 AGGAAGAGGTCATGTTCAACTC 57.721 45.455 0.00 0.00 32.83 3.01
215 216 2.996621 GGAAGAGGTCATGTTCAACTCG 59.003 50.000 0.00 0.00 32.83 4.18
216 217 2.751166 AGAGGTCATGTTCAACTCGG 57.249 50.000 0.00 0.00 33.58 4.63
217 218 1.971357 AGAGGTCATGTTCAACTCGGT 59.029 47.619 0.00 0.00 33.58 4.69
218 219 3.162666 AGAGGTCATGTTCAACTCGGTA 58.837 45.455 0.00 0.00 33.58 4.02
219 220 3.769844 AGAGGTCATGTTCAACTCGGTAT 59.230 43.478 0.00 0.00 33.58 2.73
220 221 3.861840 AGGTCATGTTCAACTCGGTATG 58.138 45.455 0.00 0.00 0.00 2.39
221 222 3.513912 AGGTCATGTTCAACTCGGTATGA 59.486 43.478 0.00 0.00 0.00 2.15
222 223 3.617263 GGTCATGTTCAACTCGGTATGAC 59.383 47.826 8.70 8.70 42.06 3.06
223 224 4.242475 GTCATGTTCAACTCGGTATGACA 58.758 43.478 11.31 0.00 42.25 3.58
224 225 4.091509 GTCATGTTCAACTCGGTATGACAC 59.908 45.833 11.31 0.00 42.25 3.67
225 226 3.737032 TGTTCAACTCGGTATGACACA 57.263 42.857 0.00 0.00 0.00 3.72
226 227 3.649073 TGTTCAACTCGGTATGACACAG 58.351 45.455 0.00 0.00 0.00 3.66
227 228 2.993899 GTTCAACTCGGTATGACACAGG 59.006 50.000 0.00 0.00 0.00 4.00
228 229 2.244695 TCAACTCGGTATGACACAGGT 58.755 47.619 0.00 0.00 0.00 4.00
229 230 2.029380 TCAACTCGGTATGACACAGGTG 60.029 50.000 0.00 0.00 0.00 4.00
230 231 0.895530 ACTCGGTATGACACAGGTGG 59.104 55.000 4.24 0.00 34.19 4.61
231 232 1.182667 CTCGGTATGACACAGGTGGA 58.817 55.000 4.24 0.00 34.19 4.02
232 233 1.548719 CTCGGTATGACACAGGTGGAA 59.451 52.381 4.24 0.00 34.19 3.53
233 234 2.168521 CTCGGTATGACACAGGTGGAAT 59.831 50.000 4.24 0.00 34.19 3.01
234 235 3.367321 TCGGTATGACACAGGTGGAATA 58.633 45.455 4.24 0.00 34.19 1.75
235 236 3.383505 TCGGTATGACACAGGTGGAATAG 59.616 47.826 4.24 0.00 34.19 1.73
236 237 3.132289 CGGTATGACACAGGTGGAATAGT 59.868 47.826 4.24 0.00 34.19 2.12
237 238 4.382685 CGGTATGACACAGGTGGAATAGTT 60.383 45.833 4.24 0.00 34.19 2.24
238 239 5.497474 GGTATGACACAGGTGGAATAGTTT 58.503 41.667 4.24 0.00 34.19 2.66
239 240 5.585047 GGTATGACACAGGTGGAATAGTTTC 59.415 44.000 4.24 0.00 34.19 2.78
240 241 4.974645 TGACACAGGTGGAATAGTTTCT 57.025 40.909 4.24 0.00 34.19 2.52
241 242 4.641396 TGACACAGGTGGAATAGTTTCTG 58.359 43.478 4.24 0.00 34.19 3.02
242 243 3.412386 ACACAGGTGGAATAGTTTCTGC 58.588 45.455 4.24 0.00 34.19 4.26
243 244 2.749621 CACAGGTGGAATAGTTTCTGCC 59.250 50.000 0.00 0.00 32.16 4.85
244 245 2.375174 ACAGGTGGAATAGTTTCTGCCA 59.625 45.455 0.00 0.00 32.12 4.92
245 246 2.749621 CAGGTGGAATAGTTTCTGCCAC 59.250 50.000 0.00 0.00 46.28 5.01
247 248 3.831715 GTGGAATAGTTTCTGCCACAC 57.168 47.619 0.00 0.00 46.27 3.82
248 249 3.412386 GTGGAATAGTTTCTGCCACACT 58.588 45.455 0.00 0.00 46.27 3.55
249 250 3.821033 GTGGAATAGTTTCTGCCACACTT 59.179 43.478 0.00 0.00 46.27 3.16
250 251 3.820467 TGGAATAGTTTCTGCCACACTTG 59.180 43.478 0.00 0.00 32.16 3.16
251 252 3.191371 GGAATAGTTTCTGCCACACTTGG 59.809 47.826 0.00 0.00 37.71 3.61
259 260 4.577152 CCACACTTGGCTGGTGAA 57.423 55.556 14.98 0.00 35.56 3.18
260 261 2.334307 CCACACTTGGCTGGTGAAG 58.666 57.895 14.98 8.28 35.56 3.02
261 262 0.179020 CCACACTTGGCTGGTGAAGA 60.179 55.000 14.98 0.00 35.56 2.87
262 263 1.546323 CCACACTTGGCTGGTGAAGAT 60.546 52.381 14.98 0.00 35.56 2.40
263 264 1.538512 CACACTTGGCTGGTGAAGATG 59.461 52.381 14.98 2.27 38.01 2.90
264 265 0.524862 CACTTGGCTGGTGAAGATGC 59.475 55.000 4.83 0.00 36.89 3.91
265 266 0.957395 ACTTGGCTGGTGAAGATGCG 60.957 55.000 0.00 0.00 0.00 4.73
266 267 0.674581 CTTGGCTGGTGAAGATGCGA 60.675 55.000 0.00 0.00 0.00 5.10
267 268 0.035152 TTGGCTGGTGAAGATGCGAT 60.035 50.000 0.00 0.00 0.00 4.58
268 269 0.462581 TGGCTGGTGAAGATGCGATC 60.463 55.000 0.00 0.00 0.00 3.69
269 270 0.179062 GGCTGGTGAAGATGCGATCT 60.179 55.000 0.00 0.00 42.61 2.75
270 271 1.216122 GCTGGTGAAGATGCGATCTC 58.784 55.000 0.00 0.00 39.08 2.75
271 272 1.485397 CTGGTGAAGATGCGATCTCG 58.515 55.000 0.00 0.00 39.08 4.04
272 273 0.103026 TGGTGAAGATGCGATCTCGG 59.897 55.000 1.34 0.00 39.08 4.63
273 274 0.103208 GGTGAAGATGCGATCTCGGT 59.897 55.000 1.34 0.00 39.08 4.69
274 275 1.482278 GTGAAGATGCGATCTCGGTC 58.518 55.000 1.34 0.00 39.08 4.79
275 276 1.066303 GTGAAGATGCGATCTCGGTCT 59.934 52.381 1.34 0.00 39.08 3.85
276 277 1.751351 TGAAGATGCGATCTCGGTCTT 59.249 47.619 1.34 3.62 39.08 3.01
277 278 2.223595 TGAAGATGCGATCTCGGTCTTC 60.224 50.000 17.22 17.22 43.04 2.87
278 279 1.686355 AGATGCGATCTCGGTCTTCT 58.314 50.000 1.34 0.00 40.23 2.85
279 280 2.852449 AGATGCGATCTCGGTCTTCTA 58.148 47.619 1.34 0.00 40.23 2.10
280 281 3.417101 AGATGCGATCTCGGTCTTCTAT 58.583 45.455 1.34 0.00 40.23 1.98
281 282 3.190327 AGATGCGATCTCGGTCTTCTATG 59.810 47.826 1.34 0.00 40.23 2.23
282 283 2.572290 TGCGATCTCGGTCTTCTATGA 58.428 47.619 1.34 0.00 40.23 2.15
283 284 3.149981 TGCGATCTCGGTCTTCTATGAT 58.850 45.455 1.34 0.00 40.23 2.45
284 285 4.324267 TGCGATCTCGGTCTTCTATGATA 58.676 43.478 1.34 0.00 40.23 2.15
285 286 4.154375 TGCGATCTCGGTCTTCTATGATAC 59.846 45.833 1.34 0.00 40.23 2.24
286 287 4.437659 GCGATCTCGGTCTTCTATGATACC 60.438 50.000 1.34 0.00 40.23 2.73
287 288 4.938832 CGATCTCGGTCTTCTATGATACCT 59.061 45.833 0.00 0.00 35.37 3.08
288 289 6.107343 CGATCTCGGTCTTCTATGATACCTA 58.893 44.000 0.00 0.00 35.37 3.08
289 290 6.594547 CGATCTCGGTCTTCTATGATACCTAA 59.405 42.308 0.00 0.00 35.37 2.69
290 291 7.281324 CGATCTCGGTCTTCTATGATACCTAAT 59.719 40.741 0.00 0.00 35.37 1.73
291 292 9.616156 GATCTCGGTCTTCTATGATACCTAATA 57.384 37.037 0.00 0.00 0.00 0.98
292 293 9.621629 ATCTCGGTCTTCTATGATACCTAATAG 57.378 37.037 0.00 0.00 0.00 1.73
293 294 7.553402 TCTCGGTCTTCTATGATACCTAATAGC 59.447 40.741 0.00 0.00 0.00 2.97
294 295 7.173032 TCGGTCTTCTATGATACCTAATAGCA 58.827 38.462 0.00 0.00 32.63 3.49
295 296 7.668469 TCGGTCTTCTATGATACCTAATAGCAA 59.332 37.037 0.00 0.00 31.63 3.91
296 297 7.755822 CGGTCTTCTATGATACCTAATAGCAAC 59.244 40.741 0.00 0.00 31.63 4.17
297 298 8.585881 GGTCTTCTATGATACCTAATAGCAACA 58.414 37.037 0.00 0.00 31.63 3.33
300 301 9.935241 CTTCTATGATACCTAATAGCAACATGT 57.065 33.333 0.00 0.00 31.63 3.21
301 302 9.710900 TTCTATGATACCTAATAGCAACATGTG 57.289 33.333 0.00 0.00 31.63 3.21
302 303 8.870116 TCTATGATACCTAATAGCAACATGTGT 58.130 33.333 0.00 0.00 31.63 3.72
305 306 8.657074 TGATACCTAATAGCAACATGTGTAAC 57.343 34.615 0.00 0.00 37.35 2.50
306 307 8.482943 TGATACCTAATAGCAACATGTGTAACT 58.517 33.333 0.00 0.00 38.04 2.24
307 308 9.326413 GATACCTAATAGCAACATGTGTAACTT 57.674 33.333 0.00 0.00 38.04 2.66
317 318 8.893727 AGCAACATGTGTAACTTATAAATCTCC 58.106 33.333 0.00 0.00 38.04 3.71
318 319 8.893727 GCAACATGTGTAACTTATAAATCTCCT 58.106 33.333 0.00 0.00 38.04 3.69
320 321 8.438676 ACATGTGTAACTTATAAATCTCCTGC 57.561 34.615 0.00 0.00 38.04 4.85
321 322 8.046708 ACATGTGTAACTTATAAATCTCCTGCA 58.953 33.333 0.00 0.00 38.04 4.41
322 323 9.060347 CATGTGTAACTTATAAATCTCCTGCAT 57.940 33.333 0.00 0.00 38.04 3.96
323 324 8.437360 TGTGTAACTTATAAATCTCCTGCATG 57.563 34.615 0.00 0.00 38.04 4.06
324 325 8.264347 TGTGTAACTTATAAATCTCCTGCATGA 58.736 33.333 0.00 0.00 38.04 3.07
325 326 9.109393 GTGTAACTTATAAATCTCCTGCATGAA 57.891 33.333 0.00 0.00 0.00 2.57
326 327 9.109393 TGTAACTTATAAATCTCCTGCATGAAC 57.891 33.333 0.00 0.00 0.00 3.18
327 328 9.109393 GTAACTTATAAATCTCCTGCATGAACA 57.891 33.333 0.00 0.00 0.00 3.18
328 329 7.559590 ACTTATAAATCTCCTGCATGAACAC 57.440 36.000 0.00 0.00 0.00 3.32
329 330 6.543831 ACTTATAAATCTCCTGCATGAACACC 59.456 38.462 0.00 0.00 0.00 4.16
330 331 3.446442 AAATCTCCTGCATGAACACCT 57.554 42.857 0.00 0.00 0.00 4.00
331 332 3.446442 AATCTCCTGCATGAACACCTT 57.554 42.857 0.00 0.00 0.00 3.50
332 333 2.189594 TCTCCTGCATGAACACCTTG 57.810 50.000 0.00 0.00 0.00 3.61
333 334 1.171308 CTCCTGCATGAACACCTTGG 58.829 55.000 0.00 0.00 0.00 3.61
334 335 0.895100 TCCTGCATGAACACCTTGGC 60.895 55.000 0.00 0.00 0.00 4.52
335 336 1.588082 CTGCATGAACACCTTGGCC 59.412 57.895 0.00 0.00 0.00 5.36
336 337 1.152589 TGCATGAACACCTTGGCCA 60.153 52.632 0.00 0.00 0.00 5.36
337 338 1.290009 GCATGAACACCTTGGCCAC 59.710 57.895 3.88 0.00 0.00 5.01
338 339 1.462731 GCATGAACACCTTGGCCACA 61.463 55.000 3.88 0.00 0.00 4.17
339 340 1.259609 CATGAACACCTTGGCCACAT 58.740 50.000 3.88 0.00 0.00 3.21
340 341 1.203052 CATGAACACCTTGGCCACATC 59.797 52.381 3.88 0.00 0.00 3.06
341 342 0.539438 TGAACACCTTGGCCACATCC 60.539 55.000 3.88 0.00 0.00 3.51
342 343 0.539438 GAACACCTTGGCCACATCCA 60.539 55.000 3.88 0.00 0.00 3.41
343 344 0.540365 AACACCTTGGCCACATCCAG 60.540 55.000 3.88 0.00 37.44 3.86
344 345 1.075482 CACCTTGGCCACATCCAGT 59.925 57.895 3.88 0.00 37.44 4.00
352 353 4.377370 CACATCCAGTGCCGTGAA 57.623 55.556 0.00 0.00 42.15 3.18
353 354 2.165380 CACATCCAGTGCCGTGAAG 58.835 57.895 0.00 0.00 42.15 3.02
354 355 1.003355 ACATCCAGTGCCGTGAAGG 60.003 57.895 0.00 0.00 44.97 3.46
355 356 1.296392 CATCCAGTGCCGTGAAGGA 59.704 57.895 0.00 0.00 45.00 3.36
356 357 0.742281 CATCCAGTGCCGTGAAGGAG 60.742 60.000 0.00 0.00 45.00 3.69
357 358 1.194781 ATCCAGTGCCGTGAAGGAGT 61.195 55.000 0.00 0.00 45.00 3.85
358 359 1.071471 CCAGTGCCGTGAAGGAGTT 59.929 57.895 0.00 0.00 45.00 3.01
359 360 0.320374 CCAGTGCCGTGAAGGAGTTA 59.680 55.000 0.00 0.00 45.00 2.24
360 361 1.673033 CCAGTGCCGTGAAGGAGTTAG 60.673 57.143 0.00 0.00 45.00 2.34
361 362 1.000955 CAGTGCCGTGAAGGAGTTAGT 59.999 52.381 0.00 0.00 45.00 2.24
362 363 2.230508 CAGTGCCGTGAAGGAGTTAGTA 59.769 50.000 0.00 0.00 45.00 1.82
363 364 2.895404 AGTGCCGTGAAGGAGTTAGTAA 59.105 45.455 0.00 0.00 45.00 2.24
364 365 3.056749 AGTGCCGTGAAGGAGTTAGTAAG 60.057 47.826 0.00 0.00 45.00 2.34
365 366 2.232941 TGCCGTGAAGGAGTTAGTAAGG 59.767 50.000 0.00 0.00 45.00 2.69
366 367 2.418334 GCCGTGAAGGAGTTAGTAAGGG 60.418 54.545 0.00 0.00 45.00 3.95
367 368 2.167900 CCGTGAAGGAGTTAGTAAGGGG 59.832 54.545 0.00 0.00 45.00 4.79
368 369 3.094572 CGTGAAGGAGTTAGTAAGGGGA 58.905 50.000 0.00 0.00 0.00 4.81
369 370 3.512724 CGTGAAGGAGTTAGTAAGGGGAA 59.487 47.826 0.00 0.00 0.00 3.97
370 371 4.161754 CGTGAAGGAGTTAGTAAGGGGAAT 59.838 45.833 0.00 0.00 0.00 3.01
371 372 5.361857 CGTGAAGGAGTTAGTAAGGGGAATA 59.638 44.000 0.00 0.00 0.00 1.75
372 373 6.127253 CGTGAAGGAGTTAGTAAGGGGAATAA 60.127 42.308 0.00 0.00 0.00 1.40
373 374 7.580109 CGTGAAGGAGTTAGTAAGGGGAATAAA 60.580 40.741 0.00 0.00 0.00 1.40
374 375 7.769507 GTGAAGGAGTTAGTAAGGGGAATAAAG 59.230 40.741 0.00 0.00 0.00 1.85
375 376 7.460082 TGAAGGAGTTAGTAAGGGGAATAAAGT 59.540 37.037 0.00 0.00 0.00 2.66
376 377 7.196637 AGGAGTTAGTAAGGGGAATAAAGTG 57.803 40.000 0.00 0.00 0.00 3.16
377 378 5.821470 GGAGTTAGTAAGGGGAATAAAGTGC 59.179 44.000 0.00 0.00 0.00 4.40
378 379 5.425630 AGTTAGTAAGGGGAATAAAGTGCG 58.574 41.667 0.00 0.00 0.00 5.34
379 380 3.277142 AGTAAGGGGAATAAAGTGCGG 57.723 47.619 0.00 0.00 0.00 5.69
380 381 2.092592 AGTAAGGGGAATAAAGTGCGGG 60.093 50.000 0.00 0.00 0.00 6.13
381 382 0.702316 AAGGGGAATAAAGTGCGGGT 59.298 50.000 0.00 0.00 0.00 5.28
382 383 1.587066 AGGGGAATAAAGTGCGGGTA 58.413 50.000 0.00 0.00 0.00 3.69
383 384 1.211212 AGGGGAATAAAGTGCGGGTAC 59.789 52.381 0.00 0.00 0.00 3.34
384 385 1.211212 GGGGAATAAAGTGCGGGTACT 59.789 52.381 0.00 0.00 0.00 2.73
385 386 2.356432 GGGGAATAAAGTGCGGGTACTT 60.356 50.000 0.00 0.00 42.43 2.24
386 387 2.681344 GGGAATAAAGTGCGGGTACTTG 59.319 50.000 2.91 0.00 40.58 3.16
387 388 2.681344 GGAATAAAGTGCGGGTACTTGG 59.319 50.000 2.91 0.00 40.58 3.61
388 389 3.602483 GAATAAAGTGCGGGTACTTGGA 58.398 45.455 2.91 0.00 40.58 3.53
389 390 2.754946 TAAAGTGCGGGTACTTGGAG 57.245 50.000 2.91 0.00 40.58 3.86
390 391 0.763035 AAAGTGCGGGTACTTGGAGT 59.237 50.000 2.91 0.00 40.58 3.85
391 392 1.636148 AAGTGCGGGTACTTGGAGTA 58.364 50.000 1.25 0.00 39.33 2.59
392 393 1.636148 AGTGCGGGTACTTGGAGTAA 58.364 50.000 0.00 0.00 31.62 2.24
393 394 1.549170 AGTGCGGGTACTTGGAGTAAG 59.451 52.381 0.00 0.00 42.30 2.34
394 395 0.899720 TGCGGGTACTTGGAGTAAGG 59.100 55.000 0.00 0.00 40.84 2.69
395 396 0.177373 GCGGGTACTTGGAGTAAGGG 59.823 60.000 0.00 0.00 40.84 3.95
396 397 0.828677 CGGGTACTTGGAGTAAGGGG 59.171 60.000 0.00 0.00 40.84 4.79
397 398 1.620524 CGGGTACTTGGAGTAAGGGGA 60.621 57.143 0.00 0.00 40.84 4.81
398 399 2.554563 GGGTACTTGGAGTAAGGGGAA 58.445 52.381 0.00 0.00 40.84 3.97
399 400 3.120898 GGGTACTTGGAGTAAGGGGAAT 58.879 50.000 0.00 0.00 40.84 3.01
400 401 3.118000 GGGTACTTGGAGTAAGGGGAATG 60.118 52.174 0.00 0.00 40.84 2.67
401 402 3.778629 GGTACTTGGAGTAAGGGGAATGA 59.221 47.826 0.00 0.00 40.84 2.57
402 403 4.412528 GGTACTTGGAGTAAGGGGAATGAT 59.587 45.833 0.00 0.00 40.84 2.45
403 404 4.510167 ACTTGGAGTAAGGGGAATGATG 57.490 45.455 0.00 0.00 40.84 3.07
404 405 4.111577 ACTTGGAGTAAGGGGAATGATGA 58.888 43.478 0.00 0.00 40.84 2.92
405 406 4.080299 ACTTGGAGTAAGGGGAATGATGAC 60.080 45.833 0.00 0.00 40.84 3.06
406 407 3.459828 TGGAGTAAGGGGAATGATGACA 58.540 45.455 0.00 0.00 0.00 3.58
407 408 3.849574 TGGAGTAAGGGGAATGATGACAA 59.150 43.478 0.00 0.00 0.00 3.18
408 409 4.478317 TGGAGTAAGGGGAATGATGACAAT 59.522 41.667 0.00 0.00 0.00 2.71
409 410 5.044179 TGGAGTAAGGGGAATGATGACAATT 60.044 40.000 0.00 0.00 0.00 2.32
410 411 5.300286 GGAGTAAGGGGAATGATGACAATTG 59.700 44.000 3.24 3.24 0.00 2.32
411 412 6.078456 AGTAAGGGGAATGATGACAATTGA 57.922 37.500 13.59 0.00 0.00 2.57
412 413 6.676558 AGTAAGGGGAATGATGACAATTGAT 58.323 36.000 13.59 0.00 0.00 2.57
413 414 7.128077 AGTAAGGGGAATGATGACAATTGATT 58.872 34.615 13.59 0.29 0.00 2.57
414 415 8.281531 AGTAAGGGGAATGATGACAATTGATTA 58.718 33.333 13.59 0.00 0.00 1.75
415 416 7.976414 AAGGGGAATGATGACAATTGATTAA 57.024 32.000 13.59 0.00 0.00 1.40
416 417 7.592885 AGGGGAATGATGACAATTGATTAAG 57.407 36.000 13.59 0.00 0.00 1.85
417 418 6.552350 AGGGGAATGATGACAATTGATTAAGG 59.448 38.462 13.59 0.00 0.00 2.69
418 419 6.550854 GGGGAATGATGACAATTGATTAAGGA 59.449 38.462 13.59 0.00 0.00 3.36
419 420 7.234166 GGGGAATGATGACAATTGATTAAGGAT 59.766 37.037 13.59 0.00 0.00 3.24
420 421 8.302438 GGGAATGATGACAATTGATTAAGGATC 58.698 37.037 13.59 0.00 35.21 3.36
421 422 8.853126 GGAATGATGACAATTGATTAAGGATCA 58.147 33.333 13.59 2.91 42.95 2.92
433 434 8.641499 TTGATTAAGGATCAACACAAAACAAC 57.359 30.769 0.00 0.00 47.00 3.32
434 435 8.006298 TGATTAAGGATCAACACAAAACAACT 57.994 30.769 0.00 0.00 41.73 3.16
435 436 8.134895 TGATTAAGGATCAACACAAAACAACTC 58.865 33.333 0.00 0.00 41.73 3.01
436 437 4.918810 AGGATCAACACAAAACAACTCC 57.081 40.909 0.00 0.00 0.00 3.85
437 438 4.277476 AGGATCAACACAAAACAACTCCA 58.723 39.130 0.00 0.00 0.00 3.86
438 439 4.895297 AGGATCAACACAAAACAACTCCAT 59.105 37.500 0.00 0.00 0.00 3.41
439 440 5.010012 AGGATCAACACAAAACAACTCCATC 59.990 40.000 0.00 0.00 0.00 3.51
440 441 4.647424 TCAACACAAAACAACTCCATCC 57.353 40.909 0.00 0.00 0.00 3.51
441 442 4.019858 TCAACACAAAACAACTCCATCCA 58.980 39.130 0.00 0.00 0.00 3.41
442 443 4.648762 TCAACACAAAACAACTCCATCCAT 59.351 37.500 0.00 0.00 0.00 3.41
443 444 4.853924 ACACAAAACAACTCCATCCATC 57.146 40.909 0.00 0.00 0.00 3.51
444 445 3.573967 ACACAAAACAACTCCATCCATCC 59.426 43.478 0.00 0.00 0.00 3.51
445 446 2.819608 ACAAAACAACTCCATCCATCCG 59.180 45.455 0.00 0.00 0.00 4.18
446 447 2.128771 AAACAACTCCATCCATCCGG 57.871 50.000 0.00 0.00 0.00 5.14
506 507 2.680974 TTTCGAGCTGGGCTTGCACT 62.681 55.000 0.00 0.00 39.88 4.40
508 509 2.960170 GAGCTGGGCTTGCACTTG 59.040 61.111 0.00 0.00 39.88 3.16
509 510 3.278592 GAGCTGGGCTTGCACTTGC 62.279 63.158 0.00 0.00 39.88 4.01
571 575 0.898326 GGCTTGATTTTGGGTCGGGT 60.898 55.000 0.00 0.00 0.00 5.28
585 589 1.886542 GTCGGGTTCAGGCTTGAAAAT 59.113 47.619 13.42 0.00 44.49 1.82
636 656 1.740025 GCTTGAGAAATGAAGGTCCCG 59.260 52.381 0.00 0.00 0.00 5.14
674 694 4.470334 GGTTTACCCGTGACTATACCAA 57.530 45.455 0.00 0.00 0.00 3.67
675 695 4.831107 GGTTTACCCGTGACTATACCAAA 58.169 43.478 0.00 0.00 0.00 3.28
676 696 5.244755 GGTTTACCCGTGACTATACCAAAA 58.755 41.667 0.00 0.00 0.00 2.44
808 828 2.762234 CGTCCGTCCTCTCGAAGGG 61.762 68.421 11.99 5.60 46.23 3.95
871 891 1.153978 CGGCTTACGCTACGTTGGA 60.154 57.895 0.00 0.00 41.54 3.53
885 905 0.893727 GTTGGACATGGCCGGAGTTT 60.894 55.000 14.43 0.00 0.00 2.66
902 922 4.137543 GAGTTTCCAATGACCAACACTCT 58.862 43.478 0.00 0.00 0.00 3.24
906 926 1.614317 CCAATGACCAACACTCTCCCC 60.614 57.143 0.00 0.00 0.00 4.81
908 928 1.673767 ATGACCAACACTCTCCCCAT 58.326 50.000 0.00 0.00 0.00 4.00
1008 1029 1.603739 GCAACTCCCCTGGTTGGTC 60.604 63.158 8.34 0.00 42.77 4.02
1062 1083 3.171388 AGATCGCCATGGGGTCCC 61.171 66.667 26.48 16.60 36.17 4.46
1751 1772 2.946762 GAGGTGTTCAACTGCGCC 59.053 61.111 4.18 0.00 35.63 6.53
1874 1895 4.021925 AGCTGGAAGGGCCACGTC 62.022 66.667 6.18 1.47 43.33 4.34
2162 2183 1.304254 TGGACCATGACAACAACGTG 58.696 50.000 0.00 0.00 0.00 4.49
2376 2399 7.819900 GTGGAGTGGACAATGGAGAATATATAC 59.180 40.741 0.00 0.00 0.00 1.47
2378 2401 7.819900 GGAGTGGACAATGGAGAATATATACAC 59.180 40.741 0.00 0.00 0.00 2.90
2380 2403 8.884323 AGTGGACAATGGAGAATATATACACAT 58.116 33.333 0.00 0.00 0.00 3.21
2381 2404 8.939929 GTGGACAATGGAGAATATATACACATG 58.060 37.037 0.00 0.00 0.00 3.21
2382 2405 8.879227 TGGACAATGGAGAATATATACACATGA 58.121 33.333 0.00 0.00 0.00 3.07
2447 2501 4.421948 GCAAGCATCTGGAAAATGAGAAG 58.578 43.478 0.00 0.00 0.00 2.85
2458 2512 4.520492 GGAAAATGAGAAGAACTGAAGGCA 59.480 41.667 0.00 0.00 0.00 4.75
2459 2513 5.184671 GGAAAATGAGAAGAACTGAAGGCAT 59.815 40.000 0.00 0.00 0.00 4.40
2460 2514 6.375455 GGAAAATGAGAAGAACTGAAGGCATA 59.625 38.462 0.00 0.00 0.00 3.14
2461 2515 7.094205 GGAAAATGAGAAGAACTGAAGGCATAA 60.094 37.037 0.00 0.00 0.00 1.90
2462 2516 7.951347 AAATGAGAAGAACTGAAGGCATAAT 57.049 32.000 0.00 0.00 0.00 1.28
2463 2517 9.466497 AAAATGAGAAGAACTGAAGGCATAATA 57.534 29.630 0.00 0.00 0.00 0.98
2490 2544 6.942532 ATATAGAGGCGAAAATTTGCAGAA 57.057 33.333 7.62 0.00 39.39 3.02
2531 2585 6.256757 CAGTTTATCGAAGGTTCAGAGATTCC 59.743 42.308 0.00 0.00 0.00 3.01
2623 2677 2.422479 GAGTTATGCCCGAGGGAAAAAC 59.578 50.000 13.28 11.34 37.50 2.43
2645 2699 6.773976 ACGGATGATACAAACCATCAAAAT 57.226 33.333 0.00 0.00 40.55 1.82
2651 2705 7.099266 TGATACAAACCATCAAAATAGCCAG 57.901 36.000 0.00 0.00 29.55 4.85
2709 2763 1.419374 GTGTTCGTCGATCTTGTGCT 58.581 50.000 0.00 0.00 0.00 4.40
2775 2829 7.968405 GCTCCACTATTTCAACGTTAATTGAAT 59.032 33.333 0.00 0.17 45.55 2.57
2810 2864 6.683974 ATTCTTCATACCAAAATGAGTCGG 57.316 37.500 0.00 0.00 37.20 4.79
2842 2896 6.592607 TGTAAATAAACAGACATCGGAAGGTC 59.407 38.462 5.35 5.35 0.00 3.85
2851 2905 0.324738 ATCGGAAGGTCAGAGGCAGA 60.325 55.000 0.00 0.00 0.00 4.26
2897 2951 9.301153 TGATAAAAACAGAGCAAAAGTTCTTTC 57.699 29.630 0.00 0.00 0.00 2.62
2939 2993 0.818445 GACCAGCATCAGGCCATCTG 60.818 60.000 5.01 4.12 46.50 2.90
2948 3002 0.743701 CAGGCCATCTGTCTGACTGC 60.744 60.000 5.01 4.21 38.64 4.40
2974 3028 3.059166 GTTTGGGTTGCTTGCATTACAG 58.941 45.455 0.00 0.00 0.00 2.74
3019 3073 3.384146 TCAACAGCTTGCAAAATTCTCCA 59.616 39.130 0.00 0.00 0.00 3.86
3086 3140 1.702957 TCCAAGTAAACACCCCTGGAG 59.297 52.381 0.00 0.00 0.00 3.86
3194 3248 2.961741 CTCCTTGTATCCAGCTCTAGCA 59.038 50.000 4.54 0.00 45.16 3.49
3212 3266 8.189460 GCTCTAGCAAATTTCATGAAGATTTCT 58.811 33.333 17.97 18.05 41.59 2.52
3290 3344 4.249661 GGTTTCTGGAAAACAAGCACAAA 58.750 39.130 6.27 0.00 37.89 2.83
3352 3406 2.816360 CGCATGCAGATGACACGGG 61.816 63.158 19.57 0.00 0.00 5.28
3359 3413 1.608025 GCAGATGACACGGGACAAGAA 60.608 52.381 0.00 0.00 0.00 2.52
3370 3424 5.123344 ACACGGGACAAGAATAAAATGCTAC 59.877 40.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.189287 CGAGGTAATCTATGGGCATTTGC 59.811 47.826 0.00 0.00 41.14 3.68
8 9 4.641396 TCGAGGTAATCTATGGGCATTTG 58.359 43.478 0.00 0.00 0.00 2.32
9 10 4.974645 TCGAGGTAATCTATGGGCATTT 57.025 40.909 0.00 0.00 0.00 2.32
10 11 4.974645 TTCGAGGTAATCTATGGGCATT 57.025 40.909 0.00 0.00 0.00 3.56
11 12 4.323792 CCATTCGAGGTAATCTATGGGCAT 60.324 45.833 1.29 0.00 35.60 4.40
12 13 3.007940 CCATTCGAGGTAATCTATGGGCA 59.992 47.826 1.29 0.00 35.60 5.36
13 14 3.600388 CCATTCGAGGTAATCTATGGGC 58.400 50.000 1.29 0.00 35.60 5.36
14 15 4.207891 CCCATTCGAGGTAATCTATGGG 57.792 50.000 12.01 12.01 44.68 4.00
15 16 3.583086 ACCCCATTCGAGGTAATCTATGG 59.417 47.826 2.15 2.15 37.45 2.74
16 17 4.528596 AGACCCCATTCGAGGTAATCTATG 59.471 45.833 0.00 0.00 36.17 2.23
17 18 4.528596 CAGACCCCATTCGAGGTAATCTAT 59.471 45.833 0.00 0.00 36.17 1.98
18 19 3.895656 CAGACCCCATTCGAGGTAATCTA 59.104 47.826 0.00 0.00 36.17 1.98
19 20 2.700897 CAGACCCCATTCGAGGTAATCT 59.299 50.000 0.00 0.00 36.17 2.40
20 21 2.434702 ACAGACCCCATTCGAGGTAATC 59.565 50.000 0.00 0.00 36.17 1.75
21 22 2.434702 GACAGACCCCATTCGAGGTAAT 59.565 50.000 0.00 0.00 36.17 1.89
22 23 1.829222 GACAGACCCCATTCGAGGTAA 59.171 52.381 0.00 0.00 36.17 2.85
23 24 1.481871 GACAGACCCCATTCGAGGTA 58.518 55.000 0.00 0.00 36.17 3.08
24 25 1.265454 GGACAGACCCCATTCGAGGT 61.265 60.000 0.00 0.00 39.75 3.85
25 26 1.522569 GGACAGACCCCATTCGAGG 59.477 63.158 0.00 0.00 0.00 4.63
26 27 1.141881 CGGACAGACCCCATTCGAG 59.858 63.158 0.00 0.00 34.64 4.04
27 28 1.304630 TCGGACAGACCCCATTCGA 60.305 57.895 0.00 0.00 34.64 3.71
28 29 1.141881 CTCGGACAGACCCCATTCG 59.858 63.158 0.00 0.00 34.64 3.34
29 30 0.461961 CTCTCGGACAGACCCCATTC 59.538 60.000 0.00 0.00 34.64 2.67
30 31 1.617947 GCTCTCGGACAGACCCCATT 61.618 60.000 0.00 0.00 34.64 3.16
31 32 2.060980 GCTCTCGGACAGACCCCAT 61.061 63.158 0.00 0.00 34.64 4.00
32 33 2.680352 GCTCTCGGACAGACCCCA 60.680 66.667 0.00 0.00 34.64 4.96
33 34 3.462678 GGCTCTCGGACAGACCCC 61.463 72.222 0.00 0.00 34.64 4.95
34 35 3.827898 CGGCTCTCGGACAGACCC 61.828 72.222 0.00 0.00 34.64 4.46
35 36 2.750637 TCGGCTCTCGGACAGACC 60.751 66.667 0.00 0.00 39.77 3.85
36 37 2.041686 ACTCGGCTCTCGGACAGAC 61.042 63.158 0.00 0.00 39.77 3.51
37 38 2.041115 CACTCGGCTCTCGGACAGA 61.041 63.158 0.00 0.00 39.77 3.41
38 39 2.487428 CACTCGGCTCTCGGACAG 59.513 66.667 0.00 0.00 39.77 3.51
39 40 3.062466 CCACTCGGCTCTCGGACA 61.062 66.667 0.00 0.00 39.77 4.02
40 41 2.272918 CTTCCACTCGGCTCTCGGAC 62.273 65.000 0.00 0.00 39.77 4.79
41 42 2.035155 TTCCACTCGGCTCTCGGA 59.965 61.111 0.00 0.00 39.77 4.55
42 43 2.492090 CTTCCACTCGGCTCTCGG 59.508 66.667 0.00 0.00 39.77 4.63
43 44 2.202676 GCTTCCACTCGGCTCTCG 60.203 66.667 0.00 0.00 40.90 4.04
44 45 1.153667 CTGCTTCCACTCGGCTCTC 60.154 63.158 0.00 0.00 0.00 3.20
45 46 2.654079 CCTGCTTCCACTCGGCTCT 61.654 63.158 0.00 0.00 0.00 4.09
46 47 2.125350 CCTGCTTCCACTCGGCTC 60.125 66.667 0.00 0.00 0.00 4.70
47 48 2.604686 TCCTGCTTCCACTCGGCT 60.605 61.111 0.00 0.00 0.00 5.52
48 49 2.125350 CTCCTGCTTCCACTCGGC 60.125 66.667 0.00 0.00 0.00 5.54
49 50 0.895530 TAACTCCTGCTTCCACTCGG 59.104 55.000 0.00 0.00 0.00 4.63
50 51 2.969628 ATAACTCCTGCTTCCACTCG 57.030 50.000 0.00 0.00 0.00 4.18
51 52 3.451178 TGGTATAACTCCTGCTTCCACTC 59.549 47.826 0.00 0.00 0.00 3.51
52 53 3.450904 TGGTATAACTCCTGCTTCCACT 58.549 45.455 0.00 0.00 0.00 4.00
53 54 3.197983 ACTGGTATAACTCCTGCTTCCAC 59.802 47.826 0.00 0.00 0.00 4.02
54 55 3.450904 ACTGGTATAACTCCTGCTTCCA 58.549 45.455 0.00 0.00 0.00 3.53
55 56 5.279556 GGATACTGGTATAACTCCTGCTTCC 60.280 48.000 0.00 0.00 0.00 3.46
56 57 5.304614 TGGATACTGGTATAACTCCTGCTTC 59.695 44.000 0.00 0.00 37.61 3.86
57 58 5.216622 TGGATACTGGTATAACTCCTGCTT 58.783 41.667 0.00 0.00 37.61 3.91
58 59 4.816126 TGGATACTGGTATAACTCCTGCT 58.184 43.478 0.00 0.00 37.61 4.24
59 60 4.561734 GCTGGATACTGGTATAACTCCTGC 60.562 50.000 9.07 9.07 35.79 4.85
60 61 4.835615 AGCTGGATACTGGTATAACTCCTG 59.164 45.833 0.00 0.00 44.98 3.86
61 62 5.081315 AGCTGGATACTGGTATAACTCCT 57.919 43.478 0.00 0.00 44.98 3.69
62 63 6.071278 CCTTAGCTGGATACTGGTATAACTCC 60.071 46.154 0.00 0.00 45.95 3.85
63 64 6.572703 GCCTTAGCTGGATACTGGTATAACTC 60.573 46.154 0.00 0.00 45.95 3.01
64 65 5.246429 GCCTTAGCTGGATACTGGTATAACT 59.754 44.000 0.00 0.00 45.95 2.24
65 66 5.480205 GCCTTAGCTGGATACTGGTATAAC 58.520 45.833 0.00 0.00 45.95 1.89
66 67 4.530946 GGCCTTAGCTGGATACTGGTATAA 59.469 45.833 0.00 0.00 45.95 0.98
67 68 4.094476 GGCCTTAGCTGGATACTGGTATA 58.906 47.826 0.00 0.00 45.95 1.47
68 69 2.907042 GGCCTTAGCTGGATACTGGTAT 59.093 50.000 0.00 0.00 45.95 2.73
69 70 2.326428 GGCCTTAGCTGGATACTGGTA 58.674 52.381 0.00 0.00 44.98 3.25
71 72 1.131638 TGGCCTTAGCTGGATACTGG 58.868 55.000 3.32 0.00 39.73 4.00
72 73 2.565841 GTTGGCCTTAGCTGGATACTG 58.434 52.381 3.32 0.00 39.73 2.74
73 74 1.490910 GGTTGGCCTTAGCTGGATACT 59.509 52.381 3.32 0.00 39.73 2.12
74 75 1.211949 TGGTTGGCCTTAGCTGGATAC 59.788 52.381 3.32 0.00 39.73 2.24
75 76 1.590591 TGGTTGGCCTTAGCTGGATA 58.409 50.000 3.32 0.00 39.73 2.59
76 77 0.929244 ATGGTTGGCCTTAGCTGGAT 59.071 50.000 3.32 0.00 39.73 3.41
77 78 0.704076 AATGGTTGGCCTTAGCTGGA 59.296 50.000 3.32 0.00 39.73 3.86
78 79 1.560505 AAATGGTTGGCCTTAGCTGG 58.439 50.000 3.32 0.00 39.73 4.85
79 80 2.099756 GCTAAATGGTTGGCCTTAGCTG 59.900 50.000 19.66 0.00 41.52 4.24
80 81 2.379005 GCTAAATGGTTGGCCTTAGCT 58.621 47.619 19.66 0.00 41.52 3.32
81 82 2.871182 GCTAAATGGTTGGCCTTAGC 57.129 50.000 14.29 14.29 39.62 3.09
87 88 3.270027 GGAATTTGGCTAAATGGTTGGC 58.730 45.455 8.97 0.00 40.35 4.52
88 89 3.056179 ACGGAATTTGGCTAAATGGTTGG 60.056 43.478 8.97 0.66 36.65 3.77
89 90 3.925913 CACGGAATTTGGCTAAATGGTTG 59.074 43.478 8.97 2.81 36.65 3.77
90 91 3.056179 CCACGGAATTTGGCTAAATGGTT 60.056 43.478 8.97 0.00 36.65 3.67
91 92 2.495669 CCACGGAATTTGGCTAAATGGT 59.504 45.455 8.97 5.23 36.65 3.55
92 93 2.757868 TCCACGGAATTTGGCTAAATGG 59.242 45.455 8.97 7.25 36.65 3.16
93 94 3.192422 TGTCCACGGAATTTGGCTAAATG 59.808 43.478 8.97 0.00 36.65 2.32
94 95 3.192633 GTGTCCACGGAATTTGGCTAAAT 59.807 43.478 1.61 1.61 38.11 1.40
95 96 2.554893 GTGTCCACGGAATTTGGCTAAA 59.445 45.455 0.00 0.00 33.71 1.85
96 97 2.156098 GTGTCCACGGAATTTGGCTAA 58.844 47.619 0.00 0.00 33.71 3.09
97 98 1.816074 GTGTCCACGGAATTTGGCTA 58.184 50.000 0.00 0.00 33.71 3.93
98 99 2.641197 GTGTCCACGGAATTTGGCT 58.359 52.632 0.00 0.00 33.71 4.75
109 110 0.941463 CTCAGTGCACTCGTGTCCAC 60.941 60.000 18.64 3.48 0.00 4.02
110 111 1.363807 CTCAGTGCACTCGTGTCCA 59.636 57.895 18.64 0.00 0.00 4.02
111 112 0.596577 TACTCAGTGCACTCGTGTCC 59.403 55.000 18.64 0.00 0.00 4.02
112 113 1.970447 CTACTCAGTGCACTCGTGTC 58.030 55.000 18.64 0.00 0.00 3.67
113 114 0.039074 GCTACTCAGTGCACTCGTGT 60.039 55.000 18.64 19.58 0.00 4.49
114 115 0.039165 TGCTACTCAGTGCACTCGTG 60.039 55.000 18.64 15.16 33.94 4.35
115 116 2.341452 TGCTACTCAGTGCACTCGT 58.659 52.632 18.64 18.85 33.94 4.18
120 121 3.006859 ACATACTTGTGCTACTCAGTGCA 59.993 43.478 0.00 0.00 33.85 4.57
121 122 3.589988 ACATACTTGTGCTACTCAGTGC 58.410 45.455 0.00 0.00 33.85 4.40
122 123 5.065704 AGACATACTTGTGCTACTCAGTG 57.934 43.478 0.00 0.00 35.79 3.66
123 124 4.142578 CGAGACATACTTGTGCTACTCAGT 60.143 45.833 0.00 0.00 35.79 3.41
124 125 4.095036 TCGAGACATACTTGTGCTACTCAG 59.905 45.833 0.00 0.00 35.79 3.35
125 126 4.007659 TCGAGACATACTTGTGCTACTCA 58.992 43.478 0.00 0.00 35.79 3.41
126 127 4.333095 TCTCGAGACATACTTGTGCTACTC 59.667 45.833 12.08 0.00 35.79 2.59
127 128 4.095185 GTCTCGAGACATACTTGTGCTACT 59.905 45.833 34.97 0.00 44.18 2.57
128 129 4.344448 GTCTCGAGACATACTTGTGCTAC 58.656 47.826 34.97 7.94 44.18 3.58
129 130 4.617808 GTCTCGAGACATACTTGTGCTA 57.382 45.455 34.97 0.00 44.18 3.49
130 131 3.495670 GTCTCGAGACATACTTGTGCT 57.504 47.619 34.97 0.00 44.18 4.40
141 142 3.438781 AGAGTCAATCAGTGTCTCGAGAC 59.561 47.826 33.76 33.76 44.36 3.36
142 143 3.680490 AGAGTCAATCAGTGTCTCGAGA 58.320 45.455 12.08 12.08 44.36 4.04
143 144 3.689161 AGAGAGTCAATCAGTGTCTCGAG 59.311 47.826 5.93 5.93 44.36 4.04
144 145 3.680490 AGAGAGTCAATCAGTGTCTCGA 58.320 45.455 0.00 0.00 44.36 4.04
145 146 4.433186 AAGAGAGTCAATCAGTGTCTCG 57.567 45.455 0.00 0.00 44.36 4.04
146 147 5.537188 ACAAAGAGAGTCAATCAGTGTCTC 58.463 41.667 0.00 0.00 41.24 3.36
147 148 5.304101 AGACAAAGAGAGTCAATCAGTGTCT 59.696 40.000 10.04 10.04 37.82 3.41
148 149 5.404968 CAGACAAAGAGAGTCAATCAGTGTC 59.595 44.000 0.00 0.87 38.46 3.67
149 150 5.163364 ACAGACAAAGAGAGTCAATCAGTGT 60.163 40.000 0.00 0.00 38.46 3.55
150 151 5.295950 ACAGACAAAGAGAGTCAATCAGTG 58.704 41.667 0.00 0.00 38.46 3.66
151 152 5.510520 GGACAGACAAAGAGAGTCAATCAGT 60.511 44.000 0.00 0.00 38.46 3.41
152 153 4.928615 GGACAGACAAAGAGAGTCAATCAG 59.071 45.833 0.00 0.00 38.46 2.90
153 154 4.344968 TGGACAGACAAAGAGAGTCAATCA 59.655 41.667 0.00 0.00 38.46 2.57
154 155 4.887748 TGGACAGACAAAGAGAGTCAATC 58.112 43.478 0.00 0.00 38.46 2.67
155 156 4.963318 TGGACAGACAAAGAGAGTCAAT 57.037 40.909 0.00 0.00 38.46 2.57
156 157 4.262635 GGATGGACAGACAAAGAGAGTCAA 60.263 45.833 0.00 0.00 38.46 3.18
157 158 3.259374 GGATGGACAGACAAAGAGAGTCA 59.741 47.826 0.00 0.00 38.46 3.41
158 159 3.674682 CGGATGGACAGACAAAGAGAGTC 60.675 52.174 0.00 0.00 36.26 3.36
159 160 2.232452 CGGATGGACAGACAAAGAGAGT 59.768 50.000 0.00 0.00 0.00 3.24
160 161 2.232452 ACGGATGGACAGACAAAGAGAG 59.768 50.000 0.00 0.00 0.00 3.20
161 162 2.248248 ACGGATGGACAGACAAAGAGA 58.752 47.619 0.00 0.00 0.00 3.10
162 163 2.751166 ACGGATGGACAGACAAAGAG 57.249 50.000 0.00 0.00 0.00 2.85
163 164 3.138304 CAAACGGATGGACAGACAAAGA 58.862 45.455 0.00 0.00 0.00 2.52
164 165 2.350772 GCAAACGGATGGACAGACAAAG 60.351 50.000 0.00 0.00 0.00 2.77
165 166 1.606668 GCAAACGGATGGACAGACAAA 59.393 47.619 0.00 0.00 0.00 2.83
166 167 1.234821 GCAAACGGATGGACAGACAA 58.765 50.000 0.00 0.00 0.00 3.18
167 168 0.948623 CGCAAACGGATGGACAGACA 60.949 55.000 0.00 0.00 34.97 3.41
168 169 1.787847 CGCAAACGGATGGACAGAC 59.212 57.895 0.00 0.00 34.97 3.51
169 170 4.277239 CGCAAACGGATGGACAGA 57.723 55.556 0.00 0.00 34.97 3.41
179 180 2.797156 CTCTTCCTATCATCCGCAAACG 59.203 50.000 0.00 0.00 39.67 3.60
180 181 3.134458 CCTCTTCCTATCATCCGCAAAC 58.866 50.000 0.00 0.00 0.00 2.93
181 182 2.771943 ACCTCTTCCTATCATCCGCAAA 59.228 45.455 0.00 0.00 0.00 3.68
182 183 2.365617 GACCTCTTCCTATCATCCGCAA 59.634 50.000 0.00 0.00 0.00 4.85
183 184 1.964223 GACCTCTTCCTATCATCCGCA 59.036 52.381 0.00 0.00 0.00 5.69
184 185 1.964223 TGACCTCTTCCTATCATCCGC 59.036 52.381 0.00 0.00 0.00 5.54
185 186 3.576118 ACATGACCTCTTCCTATCATCCG 59.424 47.826 0.00 0.00 29.25 4.18
186 187 5.070981 TGAACATGACCTCTTCCTATCATCC 59.929 44.000 0.00 0.00 29.25 3.51
187 188 6.166984 TGAACATGACCTCTTCCTATCATC 57.833 41.667 0.00 0.00 29.25 2.92
188 189 6.157645 AGTTGAACATGACCTCTTCCTATCAT 59.842 38.462 0.00 0.00 31.93 2.45
189 190 5.485353 AGTTGAACATGACCTCTTCCTATCA 59.515 40.000 0.00 0.00 0.00 2.15
190 191 5.983540 AGTTGAACATGACCTCTTCCTATC 58.016 41.667 0.00 0.00 0.00 2.08
191 192 5.394663 CGAGTTGAACATGACCTCTTCCTAT 60.395 44.000 0.00 0.00 0.00 2.57
192 193 4.082190 CGAGTTGAACATGACCTCTTCCTA 60.082 45.833 0.00 0.00 0.00 2.94
193 194 3.306364 CGAGTTGAACATGACCTCTTCCT 60.306 47.826 0.00 0.00 0.00 3.36
194 195 2.996621 CGAGTTGAACATGACCTCTTCC 59.003 50.000 0.00 0.00 0.00 3.46
195 196 2.996621 CCGAGTTGAACATGACCTCTTC 59.003 50.000 0.00 0.00 0.00 2.87
196 197 2.368875 ACCGAGTTGAACATGACCTCTT 59.631 45.455 0.00 0.00 0.00 2.85
197 198 1.971357 ACCGAGTTGAACATGACCTCT 59.029 47.619 0.00 0.00 0.00 3.69
198 199 2.457366 ACCGAGTTGAACATGACCTC 57.543 50.000 0.00 0.00 0.00 3.85
199 200 3.513912 TCATACCGAGTTGAACATGACCT 59.486 43.478 0.00 0.00 0.00 3.85
200 201 3.617263 GTCATACCGAGTTGAACATGACC 59.383 47.826 12.20 0.00 37.41 4.02
201 202 4.091509 GTGTCATACCGAGTTGAACATGAC 59.908 45.833 14.95 14.95 41.55 3.06
202 203 4.242475 GTGTCATACCGAGTTGAACATGA 58.758 43.478 0.00 0.00 0.00 3.07
203 204 3.993736 TGTGTCATACCGAGTTGAACATG 59.006 43.478 0.00 0.00 0.00 3.21
204 205 4.245660 CTGTGTCATACCGAGTTGAACAT 58.754 43.478 0.00 0.00 0.00 2.71
205 206 3.554129 CCTGTGTCATACCGAGTTGAACA 60.554 47.826 0.00 0.00 0.00 3.18
206 207 2.993899 CCTGTGTCATACCGAGTTGAAC 59.006 50.000 0.00 0.00 0.00 3.18
207 208 2.631062 ACCTGTGTCATACCGAGTTGAA 59.369 45.455 0.00 0.00 0.00 2.69
208 209 2.029380 CACCTGTGTCATACCGAGTTGA 60.029 50.000 0.00 0.00 0.00 3.18
209 210 2.337583 CACCTGTGTCATACCGAGTTG 58.662 52.381 0.00 0.00 0.00 3.16
210 211 1.275291 CCACCTGTGTCATACCGAGTT 59.725 52.381 0.00 0.00 0.00 3.01
211 212 0.895530 CCACCTGTGTCATACCGAGT 59.104 55.000 0.00 0.00 0.00 4.18
212 213 1.182667 TCCACCTGTGTCATACCGAG 58.817 55.000 0.00 0.00 0.00 4.63
213 214 1.634960 TTCCACCTGTGTCATACCGA 58.365 50.000 0.00 0.00 0.00 4.69
214 215 2.691409 ATTCCACCTGTGTCATACCG 57.309 50.000 0.00 0.00 0.00 4.02
215 216 4.755266 ACTATTCCACCTGTGTCATACC 57.245 45.455 0.00 0.00 0.00 2.73
216 217 6.313905 CAGAAACTATTCCACCTGTGTCATAC 59.686 42.308 0.00 0.00 36.12 2.39
217 218 6.406370 CAGAAACTATTCCACCTGTGTCATA 58.594 40.000 0.00 0.00 36.12 2.15
218 219 5.248640 CAGAAACTATTCCACCTGTGTCAT 58.751 41.667 0.00 0.00 36.12 3.06
219 220 4.641396 CAGAAACTATTCCACCTGTGTCA 58.359 43.478 0.00 0.00 36.12 3.58
220 221 3.437049 GCAGAAACTATTCCACCTGTGTC 59.563 47.826 0.00 0.00 36.12 3.67
221 222 3.412386 GCAGAAACTATTCCACCTGTGT 58.588 45.455 0.00 0.00 36.12 3.72
222 223 2.749621 GGCAGAAACTATTCCACCTGTG 59.250 50.000 0.00 0.00 36.12 3.66
223 224 2.375174 TGGCAGAAACTATTCCACCTGT 59.625 45.455 0.00 0.00 36.12 4.00
224 225 2.749621 GTGGCAGAAACTATTCCACCTG 59.250 50.000 0.00 0.00 40.84 4.00
225 226 2.375174 TGTGGCAGAAACTATTCCACCT 59.625 45.455 7.18 0.00 44.81 4.00
226 227 2.488153 GTGTGGCAGAAACTATTCCACC 59.512 50.000 7.18 0.00 44.81 4.61
227 228 3.412386 AGTGTGGCAGAAACTATTCCAC 58.588 45.455 2.99 2.99 45.43 4.02
228 229 3.788227 AGTGTGGCAGAAACTATTCCA 57.212 42.857 0.00 0.00 36.12 3.53
229 230 3.191371 CCAAGTGTGGCAGAAACTATTCC 59.809 47.826 0.00 0.00 38.35 3.01
230 231 4.425577 CCAAGTGTGGCAGAAACTATTC 57.574 45.455 0.00 0.00 38.35 1.75
243 244 1.538512 CATCTTCACCAGCCAAGTGTG 59.461 52.381 0.00 0.00 36.58 3.82
244 245 1.901591 CATCTTCACCAGCCAAGTGT 58.098 50.000 0.00 0.00 36.58 3.55
245 246 0.524862 GCATCTTCACCAGCCAAGTG 59.475 55.000 0.00 0.00 36.54 3.16
246 247 0.957395 CGCATCTTCACCAGCCAAGT 60.957 55.000 0.00 0.00 0.00 3.16
247 248 0.674581 TCGCATCTTCACCAGCCAAG 60.675 55.000 0.00 0.00 0.00 3.61
248 249 0.035152 ATCGCATCTTCACCAGCCAA 60.035 50.000 0.00 0.00 0.00 4.52
249 250 0.462581 GATCGCATCTTCACCAGCCA 60.463 55.000 0.00 0.00 0.00 4.75
250 251 0.179062 AGATCGCATCTTCACCAGCC 60.179 55.000 0.00 0.00 35.76 4.85
251 252 1.216122 GAGATCGCATCTTCACCAGC 58.784 55.000 0.00 0.00 40.38 4.85
252 253 1.485397 CGAGATCGCATCTTCACCAG 58.515 55.000 0.00 0.00 40.38 4.00
253 254 0.103026 CCGAGATCGCATCTTCACCA 59.897 55.000 0.00 0.00 40.38 4.17
254 255 0.103208 ACCGAGATCGCATCTTCACC 59.897 55.000 0.00 0.00 40.38 4.02
255 256 1.066303 AGACCGAGATCGCATCTTCAC 59.934 52.381 0.00 0.00 40.38 3.18
256 257 1.393603 AGACCGAGATCGCATCTTCA 58.606 50.000 0.00 0.00 40.38 3.02
257 258 2.389998 GAAGACCGAGATCGCATCTTC 58.610 52.381 21.41 21.41 44.63 2.87
258 259 2.028130 AGAAGACCGAGATCGCATCTT 58.972 47.619 15.58 15.58 42.19 2.40
259 260 1.686355 AGAAGACCGAGATCGCATCT 58.314 50.000 0.00 0.00 43.70 2.90
260 261 3.189495 TCATAGAAGACCGAGATCGCATC 59.811 47.826 0.00 0.00 38.18 3.91
261 262 3.149981 TCATAGAAGACCGAGATCGCAT 58.850 45.455 0.00 0.00 38.18 4.73
262 263 2.572290 TCATAGAAGACCGAGATCGCA 58.428 47.619 0.00 0.00 38.18 5.10
263 264 3.840890 ATCATAGAAGACCGAGATCGC 57.159 47.619 0.00 0.00 38.18 4.58
264 265 4.938832 AGGTATCATAGAAGACCGAGATCG 59.061 45.833 0.00 0.00 37.04 3.69
265 266 7.925043 TTAGGTATCATAGAAGACCGAGATC 57.075 40.000 0.00 0.00 37.04 2.75
266 267 9.621629 CTATTAGGTATCATAGAAGACCGAGAT 57.378 37.037 0.00 0.00 37.04 2.75
267 268 7.553402 GCTATTAGGTATCATAGAAGACCGAGA 59.447 40.741 0.00 0.00 37.04 4.04
268 269 7.337184 TGCTATTAGGTATCATAGAAGACCGAG 59.663 40.741 0.00 0.00 37.04 4.63
269 270 7.173032 TGCTATTAGGTATCATAGAAGACCGA 58.827 38.462 0.00 0.00 37.04 4.69
270 271 7.392494 TGCTATTAGGTATCATAGAAGACCG 57.608 40.000 0.00 0.00 37.04 4.79
271 272 8.585881 TGTTGCTATTAGGTATCATAGAAGACC 58.414 37.037 0.00 0.00 0.00 3.85
274 275 9.935241 ACATGTTGCTATTAGGTATCATAGAAG 57.065 33.333 0.00 0.00 0.00 2.85
275 276 9.710900 CACATGTTGCTATTAGGTATCATAGAA 57.289 33.333 0.00 0.00 0.00 2.10
276 277 8.870116 ACACATGTTGCTATTAGGTATCATAGA 58.130 33.333 0.00 0.00 0.00 1.98
279 280 9.273016 GTTACACATGTTGCTATTAGGTATCAT 57.727 33.333 0.00 0.00 0.00 2.45
280 281 8.482943 AGTTACACATGTTGCTATTAGGTATCA 58.517 33.333 0.00 0.00 0.00 2.15
281 282 8.888579 AGTTACACATGTTGCTATTAGGTATC 57.111 34.615 0.00 0.00 0.00 2.24
291 292 8.893727 GGAGATTTATAAGTTACACATGTTGCT 58.106 33.333 0.00 0.00 0.00 3.91
292 293 8.893727 AGGAGATTTATAAGTTACACATGTTGC 58.106 33.333 0.00 0.00 0.00 4.17
294 295 8.893727 GCAGGAGATTTATAAGTTACACATGTT 58.106 33.333 0.00 0.00 0.00 2.71
295 296 8.046708 TGCAGGAGATTTATAAGTTACACATGT 58.953 33.333 0.00 0.00 0.00 3.21
296 297 8.437360 TGCAGGAGATTTATAAGTTACACATG 57.563 34.615 0.00 0.00 0.00 3.21
297 298 9.060347 CATGCAGGAGATTTATAAGTTACACAT 57.940 33.333 0.00 0.00 0.00 3.21
298 299 8.264347 TCATGCAGGAGATTTATAAGTTACACA 58.736 33.333 0.00 0.00 0.00 3.72
299 300 8.662781 TCATGCAGGAGATTTATAAGTTACAC 57.337 34.615 0.00 0.00 0.00 2.90
300 301 9.109393 GTTCATGCAGGAGATTTATAAGTTACA 57.891 33.333 0.00 0.00 0.00 2.41
301 302 9.109393 TGTTCATGCAGGAGATTTATAAGTTAC 57.891 33.333 0.00 0.00 0.00 2.50
302 303 9.109393 GTGTTCATGCAGGAGATTTATAAGTTA 57.891 33.333 0.00 0.00 0.00 2.24
303 304 7.067494 GGTGTTCATGCAGGAGATTTATAAGTT 59.933 37.037 0.00 0.00 0.00 2.66
304 305 6.543831 GGTGTTCATGCAGGAGATTTATAAGT 59.456 38.462 0.00 0.00 0.00 2.24
305 306 6.769822 AGGTGTTCATGCAGGAGATTTATAAG 59.230 38.462 0.00 0.00 0.00 1.73
306 307 6.662755 AGGTGTTCATGCAGGAGATTTATAA 58.337 36.000 0.00 0.00 0.00 0.98
307 308 6.252599 AGGTGTTCATGCAGGAGATTTATA 57.747 37.500 0.00 0.00 0.00 0.98
308 309 5.121380 AGGTGTTCATGCAGGAGATTTAT 57.879 39.130 0.00 0.00 0.00 1.40
309 310 4.574674 AGGTGTTCATGCAGGAGATTTA 57.425 40.909 0.00 0.00 0.00 1.40
310 311 3.446442 AGGTGTTCATGCAGGAGATTT 57.554 42.857 0.00 0.00 0.00 2.17
311 312 3.087031 CAAGGTGTTCATGCAGGAGATT 58.913 45.455 0.00 0.00 0.00 2.40
312 313 2.619849 CCAAGGTGTTCATGCAGGAGAT 60.620 50.000 0.00 0.00 0.00 2.75
313 314 1.271543 CCAAGGTGTTCATGCAGGAGA 60.272 52.381 0.00 0.00 0.00 3.71
314 315 1.171308 CCAAGGTGTTCATGCAGGAG 58.829 55.000 0.00 0.00 0.00 3.69
315 316 0.895100 GCCAAGGTGTTCATGCAGGA 60.895 55.000 0.00 0.00 0.00 3.86
316 317 1.588082 GCCAAGGTGTTCATGCAGG 59.412 57.895 0.00 0.00 0.00 4.85
317 318 1.180456 TGGCCAAGGTGTTCATGCAG 61.180 55.000 0.61 0.00 0.00 4.41
318 319 1.152589 TGGCCAAGGTGTTCATGCA 60.153 52.632 0.61 0.00 0.00 3.96
319 320 1.290009 GTGGCCAAGGTGTTCATGC 59.710 57.895 7.24 0.00 0.00 4.06
320 321 1.203052 GATGTGGCCAAGGTGTTCATG 59.797 52.381 7.24 0.00 0.00 3.07
321 322 1.549203 GATGTGGCCAAGGTGTTCAT 58.451 50.000 7.24 4.36 0.00 2.57
322 323 0.539438 GGATGTGGCCAAGGTGTTCA 60.539 55.000 7.24 0.00 0.00 3.18
323 324 0.539438 TGGATGTGGCCAAGGTGTTC 60.539 55.000 7.24 0.00 34.31 3.18
324 325 0.540365 CTGGATGTGGCCAAGGTGTT 60.540 55.000 7.24 0.00 37.52 3.32
325 326 1.075482 CTGGATGTGGCCAAGGTGT 59.925 57.895 7.24 0.00 37.52 4.16
326 327 1.075482 ACTGGATGTGGCCAAGGTG 59.925 57.895 7.24 0.00 37.52 4.00
327 328 1.075482 CACTGGATGTGGCCAAGGT 59.925 57.895 7.24 0.00 42.68 3.50
328 329 2.345760 GCACTGGATGTGGCCAAGG 61.346 63.158 7.24 0.00 46.27 3.61
329 330 3.281240 GCACTGGATGTGGCCAAG 58.719 61.111 7.24 2.62 46.27 3.61
334 335 1.300971 CTTCACGGCACTGGATGTGG 61.301 60.000 0.00 0.00 46.27 4.17
336 337 1.003355 CCTTCACGGCACTGGATGT 60.003 57.895 0.00 0.00 0.00 3.06
337 338 0.742281 CTCCTTCACGGCACTGGATG 60.742 60.000 0.00 0.00 0.00 3.51
338 339 1.194781 ACTCCTTCACGGCACTGGAT 61.195 55.000 0.00 0.00 0.00 3.41
339 340 1.407656 AACTCCTTCACGGCACTGGA 61.408 55.000 0.00 0.00 0.00 3.86
340 341 0.320374 TAACTCCTTCACGGCACTGG 59.680 55.000 0.00 0.00 0.00 4.00
341 342 1.000955 ACTAACTCCTTCACGGCACTG 59.999 52.381 0.00 0.00 0.00 3.66
342 343 1.339097 ACTAACTCCTTCACGGCACT 58.661 50.000 0.00 0.00 0.00 4.40
343 344 3.251571 CTTACTAACTCCTTCACGGCAC 58.748 50.000 0.00 0.00 0.00 5.01
344 345 2.232941 CCTTACTAACTCCTTCACGGCA 59.767 50.000 0.00 0.00 0.00 5.69
345 346 2.418334 CCCTTACTAACTCCTTCACGGC 60.418 54.545 0.00 0.00 0.00 5.68
346 347 2.167900 CCCCTTACTAACTCCTTCACGG 59.832 54.545 0.00 0.00 0.00 4.94
347 348 3.094572 TCCCCTTACTAACTCCTTCACG 58.905 50.000 0.00 0.00 0.00 4.35
348 349 5.695424 ATTCCCCTTACTAACTCCTTCAC 57.305 43.478 0.00 0.00 0.00 3.18
349 350 7.460082 ACTTTATTCCCCTTACTAACTCCTTCA 59.540 37.037 0.00 0.00 0.00 3.02
350 351 7.769507 CACTTTATTCCCCTTACTAACTCCTTC 59.230 40.741 0.00 0.00 0.00 3.46
351 352 7.631007 CACTTTATTCCCCTTACTAACTCCTT 58.369 38.462 0.00 0.00 0.00 3.36
352 353 6.352823 GCACTTTATTCCCCTTACTAACTCCT 60.353 42.308 0.00 0.00 0.00 3.69
353 354 5.821470 GCACTTTATTCCCCTTACTAACTCC 59.179 44.000 0.00 0.00 0.00 3.85
354 355 5.522824 CGCACTTTATTCCCCTTACTAACTC 59.477 44.000 0.00 0.00 0.00 3.01
355 356 5.425630 CGCACTTTATTCCCCTTACTAACT 58.574 41.667 0.00 0.00 0.00 2.24
356 357 4.573607 CCGCACTTTATTCCCCTTACTAAC 59.426 45.833 0.00 0.00 0.00 2.34
357 358 4.384427 CCCGCACTTTATTCCCCTTACTAA 60.384 45.833 0.00 0.00 0.00 2.24
358 359 3.135167 CCCGCACTTTATTCCCCTTACTA 59.865 47.826 0.00 0.00 0.00 1.82
359 360 2.092592 CCCGCACTTTATTCCCCTTACT 60.093 50.000 0.00 0.00 0.00 2.24
360 361 2.294979 CCCGCACTTTATTCCCCTTAC 58.705 52.381 0.00 0.00 0.00 2.34
361 362 1.917568 ACCCGCACTTTATTCCCCTTA 59.082 47.619 0.00 0.00 0.00 2.69
362 363 0.702316 ACCCGCACTTTATTCCCCTT 59.298 50.000 0.00 0.00 0.00 3.95
363 364 1.211212 GTACCCGCACTTTATTCCCCT 59.789 52.381 0.00 0.00 0.00 4.79
364 365 1.211212 AGTACCCGCACTTTATTCCCC 59.789 52.381 0.00 0.00 0.00 4.81
365 366 2.681344 CAAGTACCCGCACTTTATTCCC 59.319 50.000 0.00 0.00 36.61 3.97
366 367 2.681344 CCAAGTACCCGCACTTTATTCC 59.319 50.000 0.00 0.00 36.61 3.01
367 368 3.602483 TCCAAGTACCCGCACTTTATTC 58.398 45.455 0.00 0.00 36.61 1.75
368 369 3.008704 ACTCCAAGTACCCGCACTTTATT 59.991 43.478 0.00 0.00 36.61 1.40
369 370 2.570302 ACTCCAAGTACCCGCACTTTAT 59.430 45.455 0.00 0.00 36.61 1.40
370 371 1.972795 ACTCCAAGTACCCGCACTTTA 59.027 47.619 0.00 0.00 36.61 1.85
371 372 0.763035 ACTCCAAGTACCCGCACTTT 59.237 50.000 0.00 0.00 36.61 2.66
372 373 1.636148 TACTCCAAGTACCCGCACTT 58.364 50.000 0.00 0.00 39.34 3.16
373 374 1.549170 CTTACTCCAAGTACCCGCACT 59.451 52.381 0.00 0.00 28.93 4.40
374 375 1.405121 CCTTACTCCAAGTACCCGCAC 60.405 57.143 0.00 0.00 28.93 5.34
375 376 0.899720 CCTTACTCCAAGTACCCGCA 59.100 55.000 0.00 0.00 28.93 5.69
376 377 0.177373 CCCTTACTCCAAGTACCCGC 59.823 60.000 0.00 0.00 28.93 6.13
377 378 0.828677 CCCCTTACTCCAAGTACCCG 59.171 60.000 0.00 0.00 28.93 5.28
378 379 2.259014 TCCCCTTACTCCAAGTACCC 57.741 55.000 0.00 0.00 28.93 3.69
379 380 3.778629 TCATTCCCCTTACTCCAAGTACC 59.221 47.826 0.00 0.00 28.93 3.34
380 381 5.130477 TCATCATTCCCCTTACTCCAAGTAC 59.870 44.000 0.00 0.00 28.93 2.73
381 382 5.130477 GTCATCATTCCCCTTACTCCAAGTA 59.870 44.000 0.00 0.00 31.77 2.24
382 383 4.080299 GTCATCATTCCCCTTACTCCAAGT 60.080 45.833 0.00 0.00 31.77 3.16
383 384 4.080356 TGTCATCATTCCCCTTACTCCAAG 60.080 45.833 0.00 0.00 0.00 3.61
384 385 3.849574 TGTCATCATTCCCCTTACTCCAA 59.150 43.478 0.00 0.00 0.00 3.53
385 386 3.459828 TGTCATCATTCCCCTTACTCCA 58.540 45.455 0.00 0.00 0.00 3.86
386 387 4.503714 TTGTCATCATTCCCCTTACTCC 57.496 45.455 0.00 0.00 0.00 3.85
387 388 6.122277 TCAATTGTCATCATTCCCCTTACTC 58.878 40.000 5.13 0.00 0.00 2.59
388 389 6.078456 TCAATTGTCATCATTCCCCTTACT 57.922 37.500 5.13 0.00 0.00 2.24
389 390 6.966534 ATCAATTGTCATCATTCCCCTTAC 57.033 37.500 5.13 0.00 0.00 2.34
390 391 9.135189 CTTAATCAATTGTCATCATTCCCCTTA 57.865 33.333 5.13 0.00 0.00 2.69
391 392 7.070322 CCTTAATCAATTGTCATCATTCCCCTT 59.930 37.037 5.13 0.00 0.00 3.95
392 393 6.552350 CCTTAATCAATTGTCATCATTCCCCT 59.448 38.462 5.13 0.00 0.00 4.79
393 394 6.550854 TCCTTAATCAATTGTCATCATTCCCC 59.449 38.462 5.13 0.00 0.00 4.81
394 395 7.587037 TCCTTAATCAATTGTCATCATTCCC 57.413 36.000 5.13 0.00 0.00 3.97
395 396 8.853126 TGATCCTTAATCAATTGTCATCATTCC 58.147 33.333 5.13 0.00 41.49 3.01
409 410 8.006298 AGTTGTTTTGTGTTGATCCTTAATCA 57.994 30.769 0.00 0.00 42.76 2.57
410 411 7.595130 GGAGTTGTTTTGTGTTGATCCTTAATC 59.405 37.037 0.00 0.00 34.72 1.75
411 412 7.069331 TGGAGTTGTTTTGTGTTGATCCTTAAT 59.931 33.333 0.00 0.00 0.00 1.40
412 413 6.378564 TGGAGTTGTTTTGTGTTGATCCTTAA 59.621 34.615 0.00 0.00 0.00 1.85
413 414 5.888724 TGGAGTTGTTTTGTGTTGATCCTTA 59.111 36.000 0.00 0.00 0.00 2.69
414 415 4.709397 TGGAGTTGTTTTGTGTTGATCCTT 59.291 37.500 0.00 0.00 0.00 3.36
415 416 4.277476 TGGAGTTGTTTTGTGTTGATCCT 58.723 39.130 0.00 0.00 0.00 3.24
416 417 4.647424 TGGAGTTGTTTTGTGTTGATCC 57.353 40.909 0.00 0.00 0.00 3.36
417 418 5.221224 TGGATGGAGTTGTTTTGTGTTGATC 60.221 40.000 0.00 0.00 0.00 2.92
418 419 4.648762 TGGATGGAGTTGTTTTGTGTTGAT 59.351 37.500 0.00 0.00 0.00 2.57
419 420 4.019858 TGGATGGAGTTGTTTTGTGTTGA 58.980 39.130 0.00 0.00 0.00 3.18
420 421 4.383850 TGGATGGAGTTGTTTTGTGTTG 57.616 40.909 0.00 0.00 0.00 3.33
421 422 4.039124 GGATGGATGGAGTTGTTTTGTGTT 59.961 41.667 0.00 0.00 0.00 3.32
422 423 3.573967 GGATGGATGGAGTTGTTTTGTGT 59.426 43.478 0.00 0.00 0.00 3.72
423 424 3.366273 CGGATGGATGGAGTTGTTTTGTG 60.366 47.826 0.00 0.00 0.00 3.33
424 425 2.819608 CGGATGGATGGAGTTGTTTTGT 59.180 45.455 0.00 0.00 0.00 2.83
425 426 2.164219 CCGGATGGATGGAGTTGTTTTG 59.836 50.000 0.00 0.00 37.49 2.44
426 427 2.041081 TCCGGATGGATGGAGTTGTTTT 59.959 45.455 0.00 0.00 40.17 2.43
427 428 1.633432 TCCGGATGGATGGAGTTGTTT 59.367 47.619 0.00 0.00 40.17 2.83
428 429 1.285280 TCCGGATGGATGGAGTTGTT 58.715 50.000 0.00 0.00 40.17 2.83
429 430 1.210478 CTTCCGGATGGATGGAGTTGT 59.790 52.381 4.15 0.00 45.91 3.32
430 431 1.486310 TCTTCCGGATGGATGGAGTTG 59.514 52.381 16.68 0.00 45.91 3.16
431 432 1.879575 TCTTCCGGATGGATGGAGTT 58.120 50.000 16.68 0.00 45.91 3.01
432 433 2.109229 ATCTTCCGGATGGATGGAGT 57.891 50.000 16.68 0.00 45.91 3.85
433 434 3.169099 ACTATCTTCCGGATGGATGGAG 58.831 50.000 26.22 19.25 45.91 3.86
434 435 3.260269 ACTATCTTCCGGATGGATGGA 57.740 47.619 26.22 11.95 45.91 3.41
435 436 3.615110 CGAACTATCTTCCGGATGGATGG 60.615 52.174 22.76 21.97 45.91 3.51
436 437 3.579709 CGAACTATCTTCCGGATGGATG 58.420 50.000 22.76 16.72 45.91 3.51
437 438 2.563179 CCGAACTATCTTCCGGATGGAT 59.437 50.000 19.66 19.66 45.91 3.41
438 439 1.961394 CCGAACTATCTTCCGGATGGA 59.039 52.381 16.68 12.98 44.29 3.41
439 440 1.000955 CCCGAACTATCTTCCGGATGG 59.999 57.143 16.68 7.95 44.29 3.51
440 441 1.605712 GCCCGAACTATCTTCCGGATG 60.606 57.143 4.15 8.29 44.29 3.51
441 442 0.680061 GCCCGAACTATCTTCCGGAT 59.320 55.000 4.15 0.00 44.29 4.18
442 443 0.396695 AGCCCGAACTATCTTCCGGA 60.397 55.000 0.00 0.00 44.29 5.14
443 444 0.249489 CAGCCCGAACTATCTTCCGG 60.249 60.000 0.00 0.00 41.47 5.14
444 445 0.249489 CCAGCCCGAACTATCTTCCG 60.249 60.000 0.00 0.00 0.00 4.30
445 446 0.106894 CCCAGCCCGAACTATCTTCC 59.893 60.000 0.00 0.00 0.00 3.46
446 447 0.533085 GCCCAGCCCGAACTATCTTC 60.533 60.000 0.00 0.00 0.00 2.87
466 467 6.201806 CGAAATACAGAAATAGAGAAGCCTGG 59.798 42.308 0.00 0.00 0.00 4.45
527 531 0.395724 CCTAAAAGCCTGGCCCGAAT 60.396 55.000 16.57 0.00 0.00 3.34
536 540 1.378646 GCCCGAAGCCTAAAAGCCT 60.379 57.895 0.00 0.00 34.35 4.58
571 575 8.026607 CCGAAATACTTTATTTTCAAGCCTGAA 58.973 33.333 0.00 0.00 38.42 3.02
585 589 2.908916 CCCGAAGCCCGAAATACTTTA 58.091 47.619 0.00 0.00 41.76 1.85
668 688 0.522495 GCGTGCGCGAATTTTGGTAT 60.522 50.000 26.19 0.00 41.33 2.73
674 694 1.511887 GTCATGCGTGCGCGAATTT 60.512 52.632 26.19 0.00 45.51 1.82
675 695 2.098298 GTCATGCGTGCGCGAATT 59.902 55.556 26.19 3.45 45.51 2.17
676 696 4.208948 CGTCATGCGTGCGCGAAT 62.209 61.111 26.19 17.29 45.51 3.34
745 765 0.666274 TGACGAACAGTGCCGTGATC 60.666 55.000 14.65 3.20 39.30 2.92
808 828 3.195698 GGAATGAGACGGCGGCAC 61.196 66.667 18.30 10.20 0.00 5.01
871 891 0.039618 ATTGGAAACTCCGGCCATGT 59.960 50.000 2.24 0.00 40.17 3.21
885 905 1.351017 GGGAGAGTGTTGGTCATTGGA 59.649 52.381 0.00 0.00 0.00 3.53
902 922 2.028125 GACGGATCGAAGCATGGGGA 62.028 60.000 0.00 0.00 0.00 4.81
906 926 2.589492 GCGGACGGATCGAAGCATG 61.589 63.158 0.00 0.00 0.00 4.06
908 928 4.508128 GGCGGACGGATCGAAGCA 62.508 66.667 0.00 0.00 0.00 3.91
1149 1170 1.248785 TATATCCTCACCTCGCCGCC 61.249 60.000 0.00 0.00 0.00 6.13
1967 1988 4.767255 AGGTACAGCTGCTGCGCC 62.767 66.667 28.39 26.96 45.42 6.53
2162 2183 3.672295 CTCCTTGCTGCCGTCCTCC 62.672 68.421 0.00 0.00 0.00 4.30
2223 2244 1.376942 CTGGACTGAGGCCTGCAAG 60.377 63.158 12.00 7.68 0.00 4.01
2224 2245 2.116983 GACTGGACTGAGGCCTGCAA 62.117 60.000 12.00 0.00 0.00 4.08
2402 2456 5.682862 GCGTTTCCTTGCACTCATATTAATG 59.317 40.000 0.00 0.00 0.00 1.90
2406 2460 3.081061 TGCGTTTCCTTGCACTCATATT 58.919 40.909 0.00 0.00 35.90 1.28
2463 2517 9.066892 TCTGCAAATTTTCGCCTCTATATTATT 57.933 29.630 0.00 0.00 0.00 1.40
2490 2544 7.443272 TCGATAAACTGATCTCATGATGCATTT 59.557 33.333 0.00 0.00 32.19 2.32
2508 2562 6.106673 TGGAATCTCTGAACCTTCGATAAAC 58.893 40.000 0.00 0.00 0.00 2.01
2531 2585 4.614535 GCAGTTTGCTGAACCTGATAACTG 60.615 45.833 0.00 0.00 45.28 3.16
2623 2677 6.857964 GCTATTTTGATGGTTTGTATCATCCG 59.142 38.462 0.00 0.00 39.06 4.18
2645 2699 6.538742 GCATCTGTAAAGATGTTTACTGGCTA 59.461 38.462 21.54 11.36 45.75 3.93
2704 2758 3.119743 GCTCATAAACAATCTGCAGCACA 60.120 43.478 9.47 0.00 0.00 4.57
2709 2763 4.325972 TGTCTGCTCATAAACAATCTGCA 58.674 39.130 0.00 0.00 0.00 4.41
2775 2829 8.603898 TTGGTATGAAGAATTAGTCTCCAGTA 57.396 34.615 0.00 0.00 34.56 2.74
2810 2864 7.201582 CCGATGTCTGTTTATTTACAGGTAACC 60.202 40.741 0.00 0.00 44.47 2.85
2831 2885 0.179089 CTGCCTCTGACCTTCCGATG 60.179 60.000 0.00 0.00 0.00 3.84
2833 2887 1.076727 TCTGCCTCTGACCTTCCGA 59.923 57.895 0.00 0.00 0.00 4.55
2842 2896 4.761739 TGAACTAAAATTGGTCTGCCTCTG 59.238 41.667 0.00 0.00 35.27 3.35
2851 2905 8.934023 TTATCAACCTCTGAACTAAAATTGGT 57.066 30.769 0.00 0.00 37.67 3.67
2897 2951 5.814188 TCATAGCATGCAAGAGTGAGTTTAG 59.186 40.000 21.98 0.00 0.00 1.85
2939 2993 0.954452 CCAAACCCTTGCAGTCAGAC 59.046 55.000 0.00 0.00 0.00 3.51
2948 3002 0.532640 GCAAGCAACCCAAACCCTTG 60.533 55.000 0.00 0.00 36.78 3.61
2974 3028 2.918131 GCAAGTTGGAACTCATCAACGC 60.918 50.000 4.75 0.00 45.47 4.84
3019 3073 0.605319 TTCCGGAGCGTTGCTTCATT 60.605 50.000 3.34 0.00 39.88 2.57
3086 3140 1.228154 AGGTTGCCCGTTGGACTTC 60.228 57.895 0.00 0.00 35.12 3.01
3113 3167 1.375523 GGCTGGTGGAGTGGTAACG 60.376 63.158 0.00 0.00 42.51 3.18
3194 3248 7.548075 GGTGATGCAGAAATCTTCATGAAATTT 59.452 33.333 19.55 19.55 30.20 1.82
3212 3266 1.655484 CAATAGCACGAGGTGATGCA 58.345 50.000 0.00 0.00 44.59 3.96
3290 3344 7.251321 TGGGTGCTGGTTATTGATTATTTTT 57.749 32.000 0.00 0.00 0.00 1.94
3352 3406 6.151144 AGTGGTGGTAGCATTTTATTCTTGTC 59.849 38.462 0.00 0.00 0.00 3.18
3359 3413 6.891908 AGAATGAAGTGGTGGTAGCATTTTAT 59.108 34.615 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.