Multiple sequence alignment - TraesCS6B01G410600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G410600 chr6B 100.000 9688 0 0 1 9688 684513695 684504008 0.000000e+00 17891.0
1 TraesCS6B01G410600 chr6B 98.647 961 13 0 1 961 684530555 684529595 0.000000e+00 1703.0
2 TraesCS6B01G410600 chr6B 90.470 724 50 8 8035 8740 613104601 613105323 0.000000e+00 937.0
3 TraesCS6B01G410600 chr6B 86.432 398 25 15 9085 9482 613105582 613105950 9.060000e-110 409.0
4 TraesCS6B01G410600 chr6B 87.940 199 13 2 8772 8970 613105322 613105509 3.520000e-54 224.0
5 TraesCS6B01G410600 chr6B 89.381 113 10 1 7936 8048 613104253 613104363 3.650000e-29 141.0
6 TraesCS6B01G410600 chr6A 92.136 3357 146 34 1397 4715 596429893 596426617 0.000000e+00 4628.0
7 TraesCS6B01G410600 chr6A 95.425 2339 86 11 4706 7026 596426453 596424118 0.000000e+00 3707.0
8 TraesCS6B01G410600 chr6A 91.725 1861 85 25 7670 9482 596423501 596421662 0.000000e+00 2519.0
9 TraesCS6B01G410600 chr6A 93.750 608 20 8 7025 7631 596424091 596423501 0.000000e+00 896.0
10 TraesCS6B01G410600 chr6A 89.139 755 34 16 675 1418 596430553 596429836 0.000000e+00 896.0
11 TraesCS6B01G410600 chr6A 90.323 465 29 5 8508 8970 554453607 554454057 6.480000e-166 595.0
12 TraesCS6B01G410600 chr6A 89.810 422 42 1 4561 4982 596335073 596334653 3.080000e-149 540.0
13 TraesCS6B01G410600 chr6A 92.916 367 22 3 4993 5357 596322484 596322120 1.850000e-146 531.0
14 TraesCS6B01G410600 chr6A 90.704 398 20 10 9085 9482 554454130 554454510 1.870000e-141 514.0
15 TraesCS6B01G410600 chr6A 85.441 261 21 6 7685 7929 554453146 554453405 1.250000e-63 255.0
16 TraesCS6B01G410600 chr6A 87.778 180 14 4 9517 9688 596421547 596421368 4.590000e-48 204.0
17 TraesCS6B01G410600 chr6A 90.323 124 11 1 5339 5461 596321951 596321828 2.800000e-35 161.0
18 TraesCS6B01G410600 chr6A 87.121 132 14 2 7933 8063 554453479 554453608 7.840000e-31 147.0
19 TraesCS6B01G410600 chr6A 100.000 47 0 0 623 669 568156121 568156167 4.820000e-13 87.9
20 TraesCS6B01G410600 chr6D 95.671 2333 79 10 4706 7026 450831940 450829618 0.000000e+00 3729.0
21 TraesCS6B01G410600 chr6D 92.619 2493 96 25 7025 9482 450829591 450827152 0.000000e+00 3504.0
22 TraesCS6B01G410600 chr6D 93.822 1829 69 12 2916 4715 450833927 450832114 0.000000e+00 2712.0
23 TraesCS6B01G410600 chr6D 94.416 1540 73 7 1397 2929 450835498 450833965 0.000000e+00 2355.0
24 TraesCS6B01G410600 chr6D 86.898 1847 128 48 7685 9482 408643221 408645002 0.000000e+00 1965.0
25 TraesCS6B01G410600 chr6D 89.376 753 27 18 675 1418 450836148 450835440 0.000000e+00 898.0
26 TraesCS6B01G410600 chr6D 91.611 453 35 3 172 622 129177345 129177796 2.970000e-174 623.0
27 TraesCS6B01G410600 chr6D 88.372 172 13 4 9524 9688 450827032 450826861 5.930000e-47 200.0
28 TraesCS6B01G410600 chr6D 100.000 47 0 0 623 669 324568523 324568569 4.820000e-13 87.9
29 TraesCS6B01G410600 chrUn 97.481 397 10 0 4722 5118 479090844 479091240 0.000000e+00 678.0
30 TraesCS6B01G410600 chrUn 91.068 459 34 7 172 627 108607449 108607903 1.790000e-171 614.0
31 TraesCS6B01G410600 chr5B 92.088 455 33 3 175 627 182510324 182509871 1.060000e-178 638.0
32 TraesCS6B01G410600 chr5B 91.540 461 32 6 170 627 267839765 267839309 6.390000e-176 628.0
33 TraesCS6B01G410600 chr1B 91.630 454 36 2 175 627 281089615 281089163 2.300000e-175 627.0
34 TraesCS6B01G410600 chr1B 95.652 46 2 0 1277 1322 46568922 46568967 3.750000e-09 75.0
35 TraesCS6B01G410600 chr5D 91.946 447 32 4 183 627 500050777 500050333 2.970000e-174 623.0
36 TraesCS6B01G410600 chr7D 91.068 459 37 4 171 627 440201148 440201604 1.380000e-172 617.0
37 TraesCS6B01G410600 chr7D 90.570 456 39 4 175 627 421452297 421451843 1.390000e-167 601.0
38 TraesCS6B01G410600 chr7A 93.642 173 10 1 1 172 195122451 195122623 3.470000e-64 257.0
39 TraesCS6B01G410600 chr7A 93.064 173 11 1 1 172 723772297 723772469 1.620000e-62 252.0
40 TraesCS6B01G410600 chr3A 93.642 173 10 1 1 172 23279050 23279222 3.470000e-64 257.0
41 TraesCS6B01G410600 chr5A 93.064 173 11 1 1 172 562988478 562988650 1.620000e-62 252.0
42 TraesCS6B01G410600 chr5A 92.486 173 12 1 1 172 210216637 210216809 7.510000e-61 246.0
43 TraesCS6B01G410600 chr4A 93.064 173 11 1 1 172 348940628 348940456 1.620000e-62 252.0
44 TraesCS6B01G410600 chr4A 93.064 173 11 1 1 172 533455569 533455397 1.620000e-62 252.0
45 TraesCS6B01G410600 chr4A 100.000 47 0 0 623 669 562460712 562460666 4.820000e-13 87.9
46 TraesCS6B01G410600 chr4B 92.486 173 11 2 1 172 525289251 525289422 7.510000e-61 246.0
47 TraesCS6B01G410600 chr4D 94.262 122 7 0 9567 9688 20108789 20108668 4.620000e-43 187.0
48 TraesCS6B01G410600 chr3D 100.000 47 0 0 623 669 269632383 269632429 4.820000e-13 87.9
49 TraesCS6B01G410600 chr2D 100.000 47 0 0 623 669 122222864 122222818 4.820000e-13 87.9
50 TraesCS6B01G410600 chr2D 97.826 46 1 0 1277 1322 41230935 41230980 8.070000e-11 80.5
51 TraesCS6B01G410600 chr2A 100.000 47 0 0 623 669 561020289 561020243 4.820000e-13 87.9
52 TraesCS6B01G410600 chr2A 100.000 47 0 0 623 669 770506103 770506149 4.820000e-13 87.9
53 TraesCS6B01G410600 chr1A 100.000 47 0 0 623 669 577599935 577599889 4.820000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G410600 chr6B 684504008 684513695 9687 True 17891.000000 17891 100.000000 1 9688 1 chr6B.!!$R1 9687
1 TraesCS6B01G410600 chr6B 684529595 684530555 960 True 1703.000000 1703 98.647000 1 961 1 chr6B.!!$R2 960
2 TraesCS6B01G410600 chr6B 613104253 613105950 1697 False 427.750000 937 88.555750 7936 9482 4 chr6B.!!$F1 1546
3 TraesCS6B01G410600 chr6A 596421368 596430553 9185 True 2141.666667 4628 91.658833 675 9688 6 chr6A.!!$R3 9013
4 TraesCS6B01G410600 chr6A 554453146 554454510 1364 False 377.750000 595 88.397250 7685 9482 4 chr6A.!!$F2 1797
5 TraesCS6B01G410600 chr6A 596321828 596322484 656 True 346.000000 531 91.619500 4993 5461 2 chr6A.!!$R2 468
6 TraesCS6B01G410600 chr6D 450826861 450836148 9287 True 2233.000000 3729 92.379333 675 9688 6 chr6D.!!$R1 9013
7 TraesCS6B01G410600 chr6D 408643221 408645002 1781 False 1965.000000 1965 86.898000 7685 9482 1 chr6D.!!$F3 1797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 773 1.070134 AGTAGTGCGACACAACCATGT 59.930 47.619 11.58 0.0 41.61 3.21 F
1278 1291 0.401356 TCAAGGACATCAAGGCAGCA 59.599 50.000 0.00 0.0 0.00 4.41 F
2403 2418 0.329261 CAAGGGTGCTGGAATCTGGA 59.671 55.000 0.00 0.0 0.00 3.86 F
3418 3509 2.243602 TGAGGTACGGTGTGAAAACC 57.756 50.000 0.00 0.0 36.82 3.27 F
4134 4229 0.323957 GTGAAGCCGGGGTTAAGAGT 59.676 55.000 12.12 0.0 0.00 3.24 F
4820 5103 0.746923 GTGGCCGGGGATAGTTTGAC 60.747 60.000 2.18 0.0 0.00 3.18 F
6026 6504 0.036732 GTGAAGGTGATGCAGGACCA 59.963 55.000 17.06 0.0 34.36 4.02 F
6911 7400 0.476338 TAGAACCAACCCAGCAAGCA 59.524 50.000 0.00 0.0 0.00 3.91 F
7507 8025 1.134670 GCGAGGCCTAGTCAAATCTGT 60.135 52.381 14.88 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1724 2.089980 CCAGCAAAGAGATTGGACTGG 58.910 52.381 0.00 0.0 40.56 4.00 R
2782 2801 2.545952 GGACCATGTAGTGCATACCTCG 60.546 54.545 0.00 0.0 35.74 4.63 R
3590 3681 1.003839 CCTAAGCGCCCAACTCACA 60.004 57.895 2.29 0.0 0.00 3.58 R
4677 4777 1.064758 AGGCAACCGCTTATTCCATGA 60.065 47.619 0.00 0.0 38.60 3.07 R
5863 6341 0.109723 TCCTACACAAGTGGGGCAAC 59.890 55.000 5.08 0.0 45.75 4.17 R
6578 7067 0.806241 GGGTTTCAGCGCGGATTTAA 59.194 50.000 11.95 0.0 0.00 1.52 R
7416 7934 0.525761 CCAAAACCATGGCCAGTACG 59.474 55.000 13.05 0.0 32.78 3.67 R
8391 9298 0.310543 GAACCAAACACGCATCAGCA 59.689 50.000 0.00 0.0 42.27 4.41 R
9276 10243 0.692476 ACATGACTAGGGCTTGTGCA 59.308 50.000 0.00 0.0 41.91 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
396 397 4.244862 GTGGACCTTGGTTTTGCAATATG 58.755 43.478 0.00 0.00 0.00 1.78
451 452 5.046288 AGGATTCAAAGGCTAGGAATCAG 57.954 43.478 27.89 1.43 45.42 2.90
452 453 4.723789 AGGATTCAAAGGCTAGGAATCAGA 59.276 41.667 27.89 2.56 45.42 3.27
531 532 6.866480 GGAACCTGAGATTTGCAAAATATGA 58.134 36.000 17.19 0.00 0.00 2.15
771 773 1.070134 AGTAGTGCGACACAACCATGT 59.930 47.619 11.58 0.00 41.61 3.21
1275 1288 1.355381 ACCATCAAGGACATCAAGGCA 59.645 47.619 0.00 0.00 41.22 4.75
1278 1291 0.401356 TCAAGGACATCAAGGCAGCA 59.599 50.000 0.00 0.00 0.00 4.41
1313 1326 2.251642 GCCAGGTGTTCGACGCTTT 61.252 57.895 0.00 0.00 0.00 3.51
1334 1348 2.590092 CCCCTCCCACTTAAGCCG 59.410 66.667 1.29 0.00 0.00 5.52
1364 1378 5.032327 ACTCGTTTTATGGGGTTCTATCC 57.968 43.478 0.00 0.00 0.00 2.59
1412 1426 9.273016 GCCTGTCATGCTATCTATTTAAAAGTA 57.727 33.333 0.00 0.00 0.00 2.24
1417 1431 9.273016 TCATGCTATCTATTTAAAAGTAGTGCC 57.727 33.333 0.00 0.00 0.00 5.01
1418 1432 8.507249 CATGCTATCTATTTAAAAGTAGTGCCC 58.493 37.037 0.00 0.00 0.00 5.36
1419 1433 7.570132 TGCTATCTATTTAAAAGTAGTGCCCA 58.430 34.615 0.00 0.00 0.00 5.36
1420 1434 8.217799 TGCTATCTATTTAAAAGTAGTGCCCAT 58.782 33.333 0.00 0.00 0.00 4.00
1421 1435 8.507249 GCTATCTATTTAAAAGTAGTGCCCATG 58.493 37.037 0.00 0.00 0.00 3.66
1422 1436 9.778741 CTATCTATTTAAAAGTAGTGCCCATGA 57.221 33.333 0.00 0.00 0.00 3.07
1423 1437 8.682936 ATCTATTTAAAAGTAGTGCCCATGAG 57.317 34.615 0.00 0.00 0.00 2.90
1424 1438 7.054124 TCTATTTAAAAGTAGTGCCCATGAGG 58.946 38.462 0.00 0.00 39.47 3.86
1436 1450 3.170672 ATGAGGCTGGGGCGCATA 61.171 61.111 10.83 0.00 45.22 3.14
1437 1451 2.756042 ATGAGGCTGGGGCGCATAA 61.756 57.895 10.83 0.00 45.22 1.90
1438 1452 2.072874 ATGAGGCTGGGGCGCATAAT 62.073 55.000 10.83 0.00 45.22 1.28
1439 1453 1.529244 GAGGCTGGGGCGCATAATT 60.529 57.895 10.83 0.00 39.81 1.40
1440 1454 1.799258 GAGGCTGGGGCGCATAATTG 61.799 60.000 10.83 0.00 39.81 2.32
1441 1455 1.827789 GGCTGGGGCGCATAATTGA 60.828 57.895 10.83 0.00 39.81 2.57
1442 1456 1.360192 GCTGGGGCGCATAATTGAC 59.640 57.895 10.83 0.00 0.00 3.18
1443 1457 2.032981 CTGGGGCGCATAATTGACC 58.967 57.895 10.83 0.00 0.00 4.02
1444 1458 1.785041 CTGGGGCGCATAATTGACCG 61.785 60.000 10.83 0.00 0.00 4.79
1445 1459 2.551912 GGGGCGCATAATTGACCGG 61.552 63.158 10.83 0.00 0.00 5.28
1479 1493 3.741856 TCACACATGATGCATTGTTTTGC 59.258 39.130 0.00 0.00 43.07 3.68
1507 1521 1.153429 GTGTGGATAGACGCACCCC 60.153 63.158 0.00 0.00 44.01 4.95
1508 1522 2.363975 TGTGGATAGACGCACCCCC 61.364 63.158 0.00 0.00 0.00 5.40
1530 1544 5.336531 CCCTAGCGAACTGTATATAACCCTG 60.337 48.000 0.00 0.00 0.00 4.45
1554 1568 3.620374 CAGTGTTATCCTGCTACTTGCTG 59.380 47.826 0.00 0.00 43.37 4.41
1559 1573 3.565764 ATCCTGCTACTTGCTGCAATA 57.434 42.857 16.38 9.44 43.37 1.90
1580 1594 1.296715 CCAACTTCTCACCCCCTCG 59.703 63.158 0.00 0.00 0.00 4.63
1605 1619 7.193595 GTGTAAATTGTGACCCATATTAGTGC 58.806 38.462 0.00 0.00 0.00 4.40
1677 1691 7.886338 TGTTATACTATCACATCAGTAGCCTG 58.114 38.462 0.00 0.00 40.25 4.85
1710 1724 1.401018 GCCGCAACTCACAATGTAACC 60.401 52.381 0.00 0.00 0.00 2.85
1738 1752 4.421948 CAATCTCTTTGCTGGCTCAATTC 58.578 43.478 0.00 0.00 0.00 2.17
1740 1754 0.523072 TCTTTGCTGGCTCAATTCGC 59.477 50.000 0.00 0.00 0.00 4.70
1851 1865 4.320023 TGCAGAGGTTCGCTTTTATACAA 58.680 39.130 0.00 0.00 0.00 2.41
1963 1977 3.981071 TGAGTCCTGACACCATTTAGG 57.019 47.619 0.00 0.00 45.67 2.69
2003 2017 6.053632 TCTTCACAGTTACATCCACATGAT 57.946 37.500 0.00 0.00 33.72 2.45
2036 2050 8.560355 TGCTGTTTCATTAACTTTCTAGCATA 57.440 30.769 0.00 0.00 36.45 3.14
2081 2095 2.106477 TGTTGACAGACACTGCAACA 57.894 45.000 23.29 23.29 45.75 3.33
2123 2137 2.374504 CTCTCCTACCCAATGGCATCAT 59.625 50.000 0.00 0.00 33.59 2.45
2142 2156 4.122046 TCATCGTGCCATGTAGAAATCAG 58.878 43.478 0.00 0.00 0.00 2.90
2143 2157 3.885724 TCGTGCCATGTAGAAATCAGA 57.114 42.857 0.00 0.00 0.00 3.27
2144 2158 4.200838 TCGTGCCATGTAGAAATCAGAA 57.799 40.909 0.00 0.00 0.00 3.02
2147 2161 2.938451 TGCCATGTAGAAATCAGAAGCG 59.062 45.455 0.00 0.00 0.00 4.68
2208 2222 4.275936 CGTATTGATCCTTTTAGGGCAAGG 59.724 45.833 0.00 0.00 42.16 3.61
2209 2223 2.826674 TGATCCTTTTAGGGCAAGGG 57.173 50.000 1.91 0.00 41.25 3.95
2253 2267 1.092921 TGTCTTCAACCACGTGCCAC 61.093 55.000 10.91 0.00 0.00 5.01
2403 2418 0.329261 CAAGGGTGCTGGAATCTGGA 59.671 55.000 0.00 0.00 0.00 3.86
2431 2450 7.396540 ACCATTGGAAGTCTACAAATGATTC 57.603 36.000 10.37 0.00 0.00 2.52
2505 2524 5.264395 CACCCTCCTTGATAGGTTTGAAAT 58.736 41.667 0.00 0.00 42.60 2.17
2632 2651 6.273825 TCTATTTCTAGGTTTCTCACGCATC 58.726 40.000 0.00 0.00 0.00 3.91
2700 2719 9.787532 TTTGACAATTTGTTTCTCTTCTTACTG 57.212 29.630 3.08 0.00 0.00 2.74
2782 2801 5.269505 TCAAAGAGATAAGCTCAGCCTAC 57.730 43.478 0.00 0.00 46.45 3.18
2838 2857 2.357009 GCTCCATGTGTTTCTATGCTGG 59.643 50.000 0.00 0.00 0.00 4.85
2865 2884 6.673583 TGACTCCTGACTATTCTGAGGATAA 58.326 40.000 0.00 0.00 34.07 1.75
2953 3023 6.808008 TGATTCAGAACTAGCTTTCTTTGG 57.192 37.500 0.00 0.00 33.31 3.28
2965 3035 6.625873 AGCTTTCTTTGGTAAGAGTTCAAG 57.374 37.500 0.00 0.00 41.25 3.02
3085 3176 9.832445 CCTAAAGCACTATTCTAAGTAATGGAA 57.168 33.333 0.00 0.00 32.60 3.53
3131 3222 7.224297 ACCTCTTCATCTAAACTTGCACTTTA 58.776 34.615 0.00 0.00 0.00 1.85
3143 3234 6.373186 ACTTGCACTTTACACTTTTAGGAC 57.627 37.500 0.00 0.00 0.00 3.85
3161 3252 9.959721 TTTTAGGACAGAGAATATAAAAGCACT 57.040 29.630 0.00 0.00 0.00 4.40
3163 3254 6.587273 AGGACAGAGAATATAAAAGCACTCC 58.413 40.000 0.00 0.00 0.00 3.85
3169 3260 9.213799 CAGAGAATATAAAAGCACTCCTATTCC 57.786 37.037 0.00 0.00 0.00 3.01
3211 3302 6.971602 TGTTTTCGACAATAGTTTGCCATTA 58.028 32.000 0.00 0.00 36.22 1.90
3216 3307 6.112734 TCGACAATAGTTTGCCATTATCAGT 58.887 36.000 0.00 0.00 36.22 3.41
3217 3308 6.037062 TCGACAATAGTTTGCCATTATCAGTG 59.963 38.462 0.00 0.00 36.22 3.66
3231 3322 8.623903 GCCATTATCAGTGAAGTCATTTTATCA 58.376 33.333 0.00 0.00 0.00 2.15
3288 3379 3.565902 CAGTCATCTGTCGCCACTCTATA 59.434 47.826 0.00 0.00 36.97 1.31
3407 3498 7.434492 AGTATTTCATCCAACTATGAGGTACG 58.566 38.462 0.00 0.00 37.20 3.67
3413 3504 2.494471 CCAACTATGAGGTACGGTGTGA 59.506 50.000 0.00 0.00 0.00 3.58
3417 3508 4.563061 ACTATGAGGTACGGTGTGAAAAC 58.437 43.478 0.00 0.00 0.00 2.43
3418 3509 2.243602 TGAGGTACGGTGTGAAAACC 57.756 50.000 0.00 0.00 36.82 3.27
3465 3556 6.552445 ATGTCTACTTTGGAGATACTTGCT 57.448 37.500 0.00 0.00 0.00 3.91
3468 3559 3.710209 ACTTTGGAGATACTTGCTGCT 57.290 42.857 0.00 0.00 0.00 4.24
3483 3574 6.889198 ACTTGCTGCTCTGGTAAGATTATAA 58.111 36.000 0.00 0.00 32.28 0.98
3533 3624 7.646314 GGATTCAAAGATCCTACAATGTGATG 58.354 38.462 0.00 0.00 41.96 3.07
3570 3661 9.400208 TGGTTAGGAACATGAATTATATCCCTA 57.600 33.333 0.00 0.00 0.00 3.53
3582 3673 3.771577 ATATCCCTAAAGGCCTGAACG 57.228 47.619 5.69 0.00 34.51 3.95
3589 3680 2.403252 AAAGGCCTGAACGACCATAG 57.597 50.000 5.69 0.00 0.00 2.23
3590 3681 1.276622 AAGGCCTGAACGACCATAGT 58.723 50.000 5.69 0.00 0.00 2.12
3685 3776 3.073062 ACAAGTTGGCATACTCTGAACCT 59.927 43.478 7.96 0.00 0.00 3.50
3722 3813 6.042208 GGTATAGTTCTTTGGCTCACCTAGAT 59.958 42.308 0.00 0.00 36.63 1.98
3743 3835 7.136822 AGATTAGCAGTATTGGTTATGTGGA 57.863 36.000 0.00 0.00 36.27 4.02
3848 3941 7.338703 ACTGAAACTACGGAATGTCTATGTCTA 59.661 37.037 0.00 0.00 0.00 2.59
3893 3986 8.495361 TTTGTGTGTATTGTACAAAGTACTGT 57.505 30.769 13.23 0.00 40.93 3.55
3894 3987 7.471657 TGTGTGTATTGTACAAAGTACTGTG 57.528 36.000 13.23 11.74 40.93 3.66
3895 3988 7.042950 TGTGTGTATTGTACAAAGTACTGTGT 58.957 34.615 22.12 22.12 40.93 3.72
3896 3989 7.010645 TGTGTGTATTGTACAAAGTACTGTGTG 59.989 37.037 26.09 13.28 40.93 3.82
3925 4018 6.313164 GTGCTACAATTCAACCTACTTAGGAC 59.687 42.308 9.40 0.00 46.63 3.85
3932 4025 8.669243 CAATTCAACCTACTTAGGACTCAATTC 58.331 37.037 9.40 0.00 46.63 2.17
3938 4031 4.408182 ACTTAGGACTCAATTCGGATGG 57.592 45.455 0.00 0.00 0.00 3.51
3959 4053 5.320549 GGCATTGCCTATCTGATTAATGG 57.679 43.478 20.66 0.00 46.69 3.16
3964 4058 7.575720 GCATTGCCTATCTGATTAATGGGTTAC 60.576 40.741 0.00 0.00 0.00 2.50
3982 4076 1.972872 ACTTTGTCTTGCTCCACTGG 58.027 50.000 0.00 0.00 0.00 4.00
4016 4110 7.522901 TTCATCAATGATTAATGCCGTTTTG 57.477 32.000 0.00 0.00 36.56 2.44
4020 4115 6.861144 TCAATGATTAATGCCGTTTTGATCA 58.139 32.000 0.00 0.00 0.00 2.92
4032 4127 5.290885 GCCGTTTTGATCACTTTTTGTCTTT 59.709 36.000 0.00 0.00 0.00 2.52
4095 4190 6.894654 AGGTTCTGTCAGATGATAAGAAGAGA 59.105 38.462 2.68 0.00 33.31 3.10
4098 4193 5.008514 TCTGTCAGATGATAAGAAGAGAGCG 59.991 44.000 0.00 0.00 0.00 5.03
4134 4229 0.323957 GTGAAGCCGGGGTTAAGAGT 59.676 55.000 12.12 0.00 0.00 3.24
4186 4281 5.648092 ACAGTACTGCTTTTCAACTCTTTGT 59.352 36.000 22.90 0.00 34.02 2.83
4480 4575 5.765182 AGACATCAGGTTTGTTGTAAGAAGG 59.235 40.000 0.00 0.00 37.37 3.46
4497 4592 8.792633 TGTAAGAAGGGTTGAAGTGAAATAATG 58.207 33.333 0.00 0.00 0.00 1.90
4617 4712 4.083324 ACGAATTTGGTCACAACTGCATAG 60.083 41.667 0.00 0.00 36.06 2.23
4698 4798 1.334869 CATGGAATAAGCGGTTGCCTC 59.665 52.381 10.73 3.50 44.31 4.70
4712 4812 4.038763 CGGTTGCCTCTAGACCAATGTATA 59.961 45.833 4.82 0.00 32.95 1.47
4713 4813 5.279506 CGGTTGCCTCTAGACCAATGTATAT 60.280 44.000 4.82 0.00 32.95 0.86
4820 5103 0.746923 GTGGCCGGGGATAGTTTGAC 60.747 60.000 2.18 0.00 0.00 3.18
4833 5116 6.140786 GGATAGTTTGACGAAAGAAACCAAC 58.859 40.000 0.00 0.00 33.34 3.77
4836 5119 5.578776 AGTTTGACGAAAGAAACCAACATC 58.421 37.500 0.00 0.00 33.34 3.06
4839 5122 3.314080 TGACGAAAGAAACCAACATCACC 59.686 43.478 0.00 0.00 0.00 4.02
4857 5140 1.697432 ACCGTTCCACCAGATTCTTCA 59.303 47.619 0.00 0.00 0.00 3.02
4860 5143 2.484264 CGTTCCACCAGATTCTTCAACC 59.516 50.000 0.00 0.00 0.00 3.77
4936 5219 6.688578 TCTAGTGTGAATTCTGGACTTACAC 58.311 40.000 12.60 12.60 37.72 2.90
5248 5533 7.015226 TGTGTGCAGCTTCATATAACAATAC 57.985 36.000 0.00 0.00 0.00 1.89
5274 5559 4.590222 AGCTTTGGCCCTATATTTCATTGG 59.410 41.667 0.00 0.00 39.73 3.16
5298 5583 6.748658 GGAAGGTAGTGTTACAACAAAACAAC 59.251 38.462 0.00 0.00 41.21 3.32
5445 5918 5.728637 AAAGGGCTGGAAAATTACAGAAG 57.271 39.130 9.58 0.00 41.85 2.85
5446 5919 3.092301 AGGGCTGGAAAATTACAGAAGC 58.908 45.455 9.58 0.00 41.85 3.86
5472 5945 5.499004 ACCTCACCATTTAGAGTAGCAAA 57.501 39.130 0.00 0.00 0.00 3.68
5505 5978 1.177401 GCAAGAACAGGGGGCTAAAG 58.823 55.000 0.00 0.00 0.00 1.85
5514 5987 5.137412 ACAGGGGGCTAAAGCATATTTAA 57.863 39.130 4.07 0.00 44.36 1.52
5549 6022 2.125912 AGCTTAGCACCGACGCAG 60.126 61.111 7.07 0.00 0.00 5.18
5561 6034 1.275657 GACGCAGGTTGTGTTCACG 59.724 57.895 0.00 0.00 41.77 4.35
5634 6107 0.885879 TTCGAGAGCGCCTCTAAACA 59.114 50.000 19.30 1.67 41.35 2.83
5666 6144 2.887152 GGTTGAAACAGCCAGAAGATGT 59.113 45.455 0.00 0.00 34.81 3.06
5669 6147 3.819368 TGAAACAGCCAGAAGATGTCAA 58.181 40.909 0.00 0.00 0.00 3.18
5751 6229 4.937620 TGTCATCCTTGTTTGATGCTAGTC 59.062 41.667 0.00 0.00 39.54 2.59
5774 6252 5.826208 TCGGTGCTGAGTTATACTGATTCTA 59.174 40.000 0.00 0.00 0.00 2.10
5779 6257 9.757227 GTGCTGAGTTATACTGATTCTATCTTT 57.243 33.333 0.00 0.00 0.00 2.52
5792 6270 9.734620 CTGATTCTATCTTTGAGTCTAGTTCAG 57.265 37.037 0.00 0.00 0.00 3.02
5840 6318 9.587461 GCGATTATTACATAAGAGCTTTTCTTC 57.413 33.333 0.00 0.00 42.54 2.87
6026 6504 0.036732 GTGAAGGTGATGCAGGACCA 59.963 55.000 17.06 0.00 34.36 4.02
6155 6634 8.793592 TCTTTTCTATAGTATTGCTGATCGCTA 58.206 33.333 10.16 4.16 40.11 4.26
6161 6640 4.384056 AGTATTGCTGATCGCTATGCTTT 58.616 39.130 14.21 1.19 42.08 3.51
6168 6647 5.991606 TGCTGATCGCTATGCTTTAGTTTAT 59.008 36.000 10.16 0.00 40.11 1.40
6187 6666 8.746052 AGTTTATTTGTAGCCTATGTTGCATA 57.254 30.769 0.00 0.00 0.00 3.14
6206 6685 9.169468 GTTGCATATGTTTGGAATTAACTATCG 57.831 33.333 4.29 0.00 29.37 2.92
6374 6857 0.595567 CTGTGCATGTGTGTTGTGCC 60.596 55.000 0.00 0.00 38.06 5.01
6396 6879 9.730420 GTGCCGACACTATTTCAATATTATTTT 57.270 29.630 0.00 0.00 43.85 1.82
6452 6935 8.856153 TGATTTATAACACCTGCAGTTAAGAA 57.144 30.769 13.81 5.76 35.33 2.52
6453 6936 8.726988 TGATTTATAACACCTGCAGTTAAGAAC 58.273 33.333 13.81 0.47 35.33 3.01
6543 7032 6.155475 TGTAGTTCCCCATTTTCTGTTTTG 57.845 37.500 0.00 0.00 0.00 2.44
6545 7034 6.834451 TGTAGTTCCCCATTTTCTGTTTTGTA 59.166 34.615 0.00 0.00 0.00 2.41
6572 7061 9.976511 AGTTTTTATATCTTCATTGCATGGATG 57.023 29.630 0.00 0.00 0.00 3.51
6742 7231 5.957842 TGAAGCTATTTTGGGTACAGTTG 57.042 39.130 0.00 0.00 0.00 3.16
6911 7400 0.476338 TAGAACCAACCCAGCAAGCA 59.524 50.000 0.00 0.00 0.00 3.91
6990 7479 3.030668 CACCAAATTTCAAGTGGAGGC 57.969 47.619 0.04 0.00 36.23 4.70
7295 7813 4.500603 ACTCATTATACCGACCTAAGCG 57.499 45.455 0.00 0.00 0.00 4.68
7373 7891 2.357009 GAGCGAATCTGATGCCACATTT 59.643 45.455 0.00 0.00 0.00 2.32
7507 8025 1.134670 GCGAGGCCTAGTCAAATCTGT 60.135 52.381 14.88 0.00 0.00 3.41
7521 8039 8.519799 AGTCAAATCTGTTTTTCCTTGAACTA 57.480 30.769 0.00 0.00 0.00 2.24
7577 8095 3.066621 TGGTTCAGAACAAAGTGACATGC 59.933 43.478 15.36 0.00 0.00 4.06
7595 8113 5.075858 CATGCTGGTGGATGTATGTTTTT 57.924 39.130 0.00 0.00 37.27 1.94
7627 8145 8.845227 TGTATGATGGCAATATTGTAATCGTTT 58.155 29.630 21.86 14.17 0.00 3.60
7650 8205 7.843490 TTTTTCATGTATACTGCCTACTGTC 57.157 36.000 4.17 0.00 0.00 3.51
7651 8206 6.791867 TTTCATGTATACTGCCTACTGTCT 57.208 37.500 4.17 0.00 0.00 3.41
7652 8207 7.891498 TTTCATGTATACTGCCTACTGTCTA 57.109 36.000 4.17 0.00 0.00 2.59
7653 8208 7.891498 TTCATGTATACTGCCTACTGTCTAA 57.109 36.000 4.17 0.00 0.00 2.10
7654 8209 7.891498 TCATGTATACTGCCTACTGTCTAAA 57.109 36.000 4.17 0.00 0.00 1.85
7655 8210 8.478775 TCATGTATACTGCCTACTGTCTAAAT 57.521 34.615 4.17 0.00 0.00 1.40
7656 8211 8.924303 TCATGTATACTGCCTACTGTCTAAATT 58.076 33.333 4.17 0.00 0.00 1.82
7660 8215 9.141400 GTATACTGCCTACTGTCTAAATTATGC 57.859 37.037 0.00 0.00 0.00 3.14
7661 8216 5.368989 ACTGCCTACTGTCTAAATTATGCC 58.631 41.667 0.00 0.00 0.00 4.40
7662 8217 4.377021 TGCCTACTGTCTAAATTATGCCG 58.623 43.478 0.00 0.00 0.00 5.69
7663 8218 4.141801 TGCCTACTGTCTAAATTATGCCGT 60.142 41.667 0.00 0.00 0.00 5.68
7664 8219 4.814771 GCCTACTGTCTAAATTATGCCGTT 59.185 41.667 0.00 0.00 0.00 4.44
7665 8220 5.277345 GCCTACTGTCTAAATTATGCCGTTG 60.277 44.000 0.00 0.00 0.00 4.10
7666 8221 6.046593 CCTACTGTCTAAATTATGCCGTTGA 58.953 40.000 0.00 0.00 0.00 3.18
7667 8222 6.706270 CCTACTGTCTAAATTATGCCGTTGAT 59.294 38.462 0.00 0.00 0.00 2.57
7668 8223 7.870954 CCTACTGTCTAAATTATGCCGTTGATA 59.129 37.037 0.00 0.00 0.00 2.15
7669 8224 9.424319 CTACTGTCTAAATTATGCCGTTGATAT 57.576 33.333 0.00 0.00 0.00 1.63
7712 8267 6.109156 AGTATGGTGTTGTGTAGTCATTCA 57.891 37.500 0.00 0.00 0.00 2.57
7922 8493 5.073144 TGAAAATACACTTCCCCTCTTGAGT 59.927 40.000 0.00 0.00 0.00 3.41
7933 8504 8.103935 ACTTCCCCTCTTGAGTCTTTTTATTAG 58.896 37.037 0.00 0.00 0.00 1.73
8127 9024 3.835395 TCCTTTCTTTGTCTCTCCCTCTC 59.165 47.826 0.00 0.00 0.00 3.20
8129 9026 1.178276 TCTTTGTCTCTCCCTCTCGC 58.822 55.000 0.00 0.00 0.00 5.03
8181 9087 3.222173 ACCAGTGGAACATTGCTGTAA 57.778 42.857 18.40 0.00 45.07 2.41
8182 9088 3.561143 ACCAGTGGAACATTGCTGTAAA 58.439 40.909 18.40 0.00 45.07 2.01
8377 9283 7.278875 TGGGTAAAAATGCTGAACTTGATTTT 58.721 30.769 0.00 0.00 30.98 1.82
8391 9298 9.979578 TGAACTTGATTTTGTTATACTGCAATT 57.020 25.926 0.00 0.00 0.00 2.32
8399 9306 4.923893 TGTTATACTGCAATTGCTGATGC 58.076 39.130 35.13 21.71 41.71 3.91
8409 9316 0.743688 TTGCTGATGCGTGTTTGGTT 59.256 45.000 0.00 0.00 43.34 3.67
8410 9317 0.310543 TGCTGATGCGTGTTTGGTTC 59.689 50.000 0.00 0.00 43.34 3.62
8416 9323 2.270275 TGCGTGTTTGGTTCTGTTTG 57.730 45.000 0.00 0.00 0.00 2.93
8524 9447 9.126151 TCATGTTCAGTTCCTTTTTATTGTACA 57.874 29.630 0.00 0.00 0.00 2.90
8621 9545 1.896220 TGTCCTCATGTTGACCAAGC 58.104 50.000 12.61 0.00 0.00 4.01
8654 9578 8.357290 TGAATTCTTTCAGATCCATTGTCAAT 57.643 30.769 7.05 0.00 36.94 2.57
8675 9599 0.899717 GGGCATCCAAGTGGCTGAAA 60.900 55.000 5.36 0.00 43.55 2.69
8730 9656 1.135859 CGCATTCTCTTCAACACCAGC 60.136 52.381 0.00 0.00 0.00 4.85
8893 9820 9.587461 AATTTTATTGACGCCGTTTTTATTTTG 57.413 25.926 0.00 0.00 0.00 2.44
8987 9930 3.064207 GTCGGCCGCAGATATTGAAATA 58.936 45.455 23.51 0.00 0.00 1.40
9069 10026 1.271762 ACATCAGGCTGTGCAAGTGAT 60.272 47.619 15.27 0.00 0.00 3.06
9071 10028 1.241165 TCAGGCTGTGCAAGTGATTG 58.759 50.000 15.27 0.00 0.00 2.67
9074 10034 2.034124 AGGCTGTGCAAGTGATTGTTT 58.966 42.857 0.00 0.00 0.00 2.83
9082 10042 3.373439 TGCAAGTGATTGTTTTTGTTGCC 59.627 39.130 0.00 0.00 38.40 4.52
9103 10063 4.440112 GCCTCAAATTCAGAATAAACGGGG 60.440 45.833 0.00 0.00 0.00 5.73
9107 10067 2.871096 TTCAGAATAAACGGGGCACT 57.129 45.000 0.00 0.00 0.00 4.40
9173 10133 7.667219 ACACAAGATTTCTGGACAGAATACAAT 59.333 33.333 14.83 6.19 45.78 2.71
9177 10137 9.918630 AAGATTTCTGGACAGAATACAATTTTG 57.081 29.630 14.83 0.00 45.78 2.44
9179 10139 9.132521 GATTTCTGGACAGAATACAATTTTGTG 57.867 33.333 14.83 0.00 45.78 3.33
9181 10141 6.969366 TCTGGACAGAATACAATTTTGTGTG 58.031 36.000 6.21 1.90 36.90 3.82
9276 10243 7.884877 TGATATCATCTGAACTTGAAGGTTGTT 59.115 33.333 0.00 0.00 0.00 2.83
9277 10244 5.756195 TCATCTGAACTTGAAGGTTGTTG 57.244 39.130 0.00 0.00 0.00 3.33
9278 10245 4.036734 TCATCTGAACTTGAAGGTTGTTGC 59.963 41.667 0.00 0.00 0.00 4.17
9292 10259 0.472044 TGTTGCACAAGCCCTAGTCA 59.528 50.000 0.00 0.00 41.13 3.41
9485 10458 4.227134 CGGAGTCATCCTGGCCGG 62.227 72.222 3.88 3.88 44.22 6.13
9486 10459 3.083997 GGAGTCATCCTGGCCGGT 61.084 66.667 11.58 0.00 42.94 5.28
9487 10460 2.187946 GAGTCATCCTGGCCGGTG 59.812 66.667 11.58 2.96 0.00 4.94
9488 10461 3.391665 GAGTCATCCTGGCCGGTGG 62.392 68.421 11.58 6.88 0.00 4.61
9490 10463 2.609299 TCATCCTGGCCGGTGGAA 60.609 61.111 11.58 0.00 35.81 3.53
9494 10467 4.659172 CCTGGCCGGTGGAAGCAA 62.659 66.667 11.58 0.00 0.00 3.91
9496 10469 2.123683 TGGCCGGTGGAAGCAAAA 60.124 55.556 1.90 0.00 0.00 2.44
9497 10470 1.532794 TGGCCGGTGGAAGCAAAAT 60.533 52.632 1.90 0.00 0.00 1.82
9498 10471 1.079888 GGCCGGTGGAAGCAAAATG 60.080 57.895 1.90 0.00 0.00 2.32
9499 10472 1.665442 GCCGGTGGAAGCAAAATGT 59.335 52.632 1.90 0.00 0.00 2.71
9500 10473 0.885196 GCCGGTGGAAGCAAAATGTA 59.115 50.000 1.90 0.00 0.00 2.29
9501 10474 1.271102 GCCGGTGGAAGCAAAATGTAA 59.729 47.619 1.90 0.00 0.00 2.41
9502 10475 2.671070 GCCGGTGGAAGCAAAATGTAAG 60.671 50.000 1.90 0.00 0.00 2.34
9503 10476 2.094752 CCGGTGGAAGCAAAATGTAAGG 60.095 50.000 0.00 0.00 0.00 2.69
9504 10477 2.671070 CGGTGGAAGCAAAATGTAAGGC 60.671 50.000 0.00 0.00 0.00 4.35
9505 10478 2.562738 GGTGGAAGCAAAATGTAAGGCT 59.437 45.455 0.00 0.00 38.45 4.58
9506 10479 3.761752 GGTGGAAGCAAAATGTAAGGCTA 59.238 43.478 0.00 0.00 35.11 3.93
9509 10482 5.358160 GTGGAAGCAAAATGTAAGGCTAGAT 59.642 40.000 0.00 0.00 35.11 1.98
9510 10483 5.357878 TGGAAGCAAAATGTAAGGCTAGATG 59.642 40.000 0.00 0.00 35.11 2.90
9511 10484 5.221126 GGAAGCAAAATGTAAGGCTAGATGG 60.221 44.000 0.00 0.00 35.11 3.51
9512 10485 5.116084 AGCAAAATGTAAGGCTAGATGGA 57.884 39.130 0.00 0.00 34.25 3.41
9517 10490 4.696479 ATGTAAGGCTAGATGGAGGTTG 57.304 45.455 0.00 0.00 0.00 3.77
9519 10492 4.101114 TGTAAGGCTAGATGGAGGTTGAA 58.899 43.478 0.00 0.00 0.00 2.69
9520 10493 3.922171 AAGGCTAGATGGAGGTTGAAG 57.078 47.619 0.00 0.00 0.00 3.02
9522 10495 3.663198 AGGCTAGATGGAGGTTGAAGAT 58.337 45.455 0.00 0.00 0.00 2.40
9532 10589 5.431765 TGGAGGTTGAAGATAAGATTCTGC 58.568 41.667 0.00 0.00 0.00 4.26
9536 10593 4.494855 GGTTGAAGATAAGATTCTGCGCAC 60.495 45.833 5.66 0.00 0.00 5.34
9561 10618 2.416547 ACATTTGTGACATAGCACGAGC 59.583 45.455 0.00 0.00 41.63 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
362 363 3.697045 CCAAGGTCCACAAAACACAAGTA 59.303 43.478 0.00 0.00 0.00 2.24
396 397 7.577979 TGACAAACAAAATCGGACAATAGTAC 58.422 34.615 0.00 0.00 0.00 2.73
514 515 9.683069 ATTAATCGGTCATATTTTGCAAATCTC 57.317 29.630 13.65 1.33 0.00 2.75
531 532 5.947228 TTATCGGTCGACTATTAATCGGT 57.053 39.130 16.46 7.31 40.05 4.69
992 1005 3.640000 CGAGCGCCATTAAGCCGG 61.640 66.667 2.29 0.00 0.00 6.13
1275 1288 2.107141 GCGAGCTTCCGGTATGCT 59.893 61.111 15.84 15.84 41.07 3.79
1313 1326 1.205460 GCTTAAGTGGGAGGGGGACA 61.205 60.000 4.02 0.00 0.00 4.02
1334 1348 3.139077 CCCATAAAACGAGTAGGGATGC 58.861 50.000 0.00 0.00 38.60 3.91
1364 1378 5.343249 GCTGATGGGCACTACTTTTAAATG 58.657 41.667 0.00 0.00 0.00 2.32
1418 1432 2.963928 TTATGCGCCCCAGCCTCATG 62.964 60.000 4.18 0.00 36.02 3.07
1419 1433 2.072874 ATTATGCGCCCCAGCCTCAT 62.073 55.000 4.18 0.00 36.02 2.90
1420 1434 2.283143 AATTATGCGCCCCAGCCTCA 62.283 55.000 4.18 0.00 36.02 3.86
1421 1435 1.529244 AATTATGCGCCCCAGCCTC 60.529 57.895 4.18 0.00 36.02 4.70
1422 1436 1.829533 CAATTATGCGCCCCAGCCT 60.830 57.895 4.18 0.00 36.02 4.58
1423 1437 1.827789 TCAATTATGCGCCCCAGCC 60.828 57.895 4.18 0.00 36.02 4.85
1424 1438 1.360192 GTCAATTATGCGCCCCAGC 59.640 57.895 4.18 0.00 37.71 4.85
1425 1439 1.785041 CGGTCAATTATGCGCCCCAG 61.785 60.000 4.18 0.00 0.00 4.45
1426 1440 1.821759 CGGTCAATTATGCGCCCCA 60.822 57.895 4.18 0.00 0.00 4.96
1427 1441 2.551912 CCGGTCAATTATGCGCCCC 61.552 63.158 4.18 0.00 0.00 5.80
1428 1442 1.507141 CTCCGGTCAATTATGCGCCC 61.507 60.000 4.18 0.00 0.00 6.13
1429 1443 0.814010 ACTCCGGTCAATTATGCGCC 60.814 55.000 4.18 0.00 0.00 6.53
1430 1444 1.003866 GAACTCCGGTCAATTATGCGC 60.004 52.381 0.00 0.00 0.00 6.09
1431 1445 1.597663 GGAACTCCGGTCAATTATGCG 59.402 52.381 0.00 0.00 0.00 4.73
1432 1446 2.919228 AGGAACTCCGGTCAATTATGC 58.081 47.619 0.00 0.00 42.08 3.14
1433 1447 4.513442 TCAAGGAACTCCGGTCAATTATG 58.487 43.478 0.00 0.00 38.49 1.90
1434 1448 4.837093 TCAAGGAACTCCGGTCAATTAT 57.163 40.909 0.00 0.00 38.49 1.28
1435 1449 4.627284 TTCAAGGAACTCCGGTCAATTA 57.373 40.909 0.00 0.00 38.49 1.40
1436 1450 3.502123 TTCAAGGAACTCCGGTCAATT 57.498 42.857 0.00 0.00 38.49 2.32
1437 1451 3.009033 TGATTCAAGGAACTCCGGTCAAT 59.991 43.478 0.00 0.00 38.49 2.57
1438 1452 2.370519 TGATTCAAGGAACTCCGGTCAA 59.629 45.455 0.00 0.00 38.49 3.18
1439 1453 1.974957 TGATTCAAGGAACTCCGGTCA 59.025 47.619 0.00 0.00 38.49 4.02
1440 1454 2.289444 TGTGATTCAAGGAACTCCGGTC 60.289 50.000 0.00 0.00 38.49 4.79
1441 1455 1.697432 TGTGATTCAAGGAACTCCGGT 59.303 47.619 0.00 0.00 38.49 5.28
1442 1456 2.076863 GTGTGATTCAAGGAACTCCGG 58.923 52.381 0.00 0.00 38.49 5.14
1443 1457 2.766313 TGTGTGATTCAAGGAACTCCG 58.234 47.619 0.00 0.00 38.49 4.63
1444 1458 4.326826 TCATGTGTGATTCAAGGAACTCC 58.673 43.478 0.00 0.00 38.49 3.85
1445 1459 5.675575 GCATCATGTGTGATTCAAGGAACTC 60.676 44.000 5.27 0.00 42.37 3.01
1479 1493 4.508124 GCGTCTATCCACACTTTATCCAAG 59.492 45.833 0.00 0.00 38.64 3.61
1507 1521 5.336531 CCAGGGTTATATACAGTTCGCTAGG 60.337 48.000 0.00 0.00 0.00 3.02
1508 1522 5.710984 CCAGGGTTATATACAGTTCGCTAG 58.289 45.833 0.00 0.00 0.00 3.42
1554 1568 3.010420 GGGTGAGAAGTTGGTCTATTGC 58.990 50.000 0.00 0.00 0.00 3.56
1559 1573 0.104409 AGGGGGTGAGAAGTTGGTCT 60.104 55.000 0.00 0.00 0.00 3.85
1580 1594 7.067008 AGCACTAATATGGGTCACAATTTACAC 59.933 37.037 0.00 0.00 0.00 2.90
1605 1619 7.170277 TCACCATATCATCCAATATTCACCAG 58.830 38.462 0.00 0.00 0.00 4.00
1677 1691 3.064931 AGTTGCGGCTACAAAGTTCTAC 58.935 45.455 16.41 0.00 0.00 2.59
1710 1724 2.089980 CCAGCAAAGAGATTGGACTGG 58.910 52.381 0.00 0.00 40.56 4.00
1768 1782 2.661504 TGCGAAACATTCAACACTCG 57.338 45.000 0.00 0.00 0.00 4.18
1928 1942 5.011125 TCAGGACTCAACCTCTAGAAAACAG 59.989 44.000 0.00 0.00 38.32 3.16
1935 1949 2.494073 GGTGTCAGGACTCAACCTCTAG 59.506 54.545 0.65 0.00 38.32 2.43
1963 1977 5.964958 TGAAGATCTCACACAAAATTCCC 57.035 39.130 0.00 0.00 0.00 3.97
2003 2017 4.395854 AGTTAATGAAACAGCATGATGCGA 59.604 37.500 11.67 0.00 41.27 5.10
2036 2050 4.457257 GCTGGAGCAGTGAGAAAAACTATT 59.543 41.667 0.00 0.00 41.59 1.73
2040 2054 2.695613 GCTGGAGCAGTGAGAAAAAC 57.304 50.000 0.00 0.00 41.59 2.43
2081 2095 6.831976 AGAGTCAGACTTTCCAGTGTTAAAT 58.168 36.000 4.05 0.00 31.22 1.40
2123 2137 3.885724 TCTGATTTCTACATGGCACGA 57.114 42.857 0.00 0.00 0.00 4.35
2208 2222 4.164843 TGTTGGATTAGATGTTAGGCCC 57.835 45.455 0.00 0.00 0.00 5.80
2209 2223 6.715347 AAATGTTGGATTAGATGTTAGGCC 57.285 37.500 0.00 0.00 0.00 5.19
2220 2234 7.708752 GTGGTTGAAGACAAAAATGTTGGATTA 59.291 33.333 0.00 0.00 37.77 1.75
2253 2267 6.317893 ACGACCCCAAAAATAGCTATTGTAAG 59.682 38.462 19.53 10.24 0.00 2.34
2403 2418 8.877864 TCATTTGTAGACTTCCAATGGTATTT 57.122 30.769 0.00 0.00 0.00 1.40
2431 2450 6.662865 ATACAAGATCATGTCCTAGTCCAG 57.337 41.667 6.89 0.00 34.75 3.86
2669 2688 7.698130 AGAAGAGAAACAAATTGTCAAAACTCG 59.302 33.333 0.00 0.00 33.84 4.18
2700 2719 7.707035 CAGGATGATACTACAAGGTAAAGACAC 59.293 40.741 0.00 0.00 39.69 3.67
2782 2801 2.545952 GGACCATGTAGTGCATACCTCG 60.546 54.545 0.00 0.00 35.74 4.63
2838 2857 4.338118 CCTCAGAATAGTCAGGAGTCAGAC 59.662 50.000 9.89 6.81 35.02 3.51
2865 2884 4.584638 TCACAATGGCCCATACTTAACT 57.415 40.909 0.00 0.00 0.00 2.24
2877 2896 6.926272 TGTTTTAGGTACATTTTCACAATGGC 59.074 34.615 0.00 0.00 32.14 4.40
2965 3035 7.255139 GCCACTTGGTAAGGTGATAATTCATAC 60.255 40.741 0.00 0.00 37.57 2.39
3085 3176 3.168035 TGATTTGCAACCACCCACTAT 57.832 42.857 0.00 0.00 0.00 2.12
3109 3200 7.715249 AGTGTAAAGTGCAAGTTTAGATGAAGA 59.285 33.333 3.32 0.00 42.00 2.87
3143 3234 9.213799 GGAATAGGAGTGCTTTTATATTCTCTG 57.786 37.037 0.00 0.00 32.68 3.35
3196 3287 7.765307 ACTTCACTGATAATGGCAAACTATTG 58.235 34.615 0.00 0.00 39.65 1.90
3211 3302 8.641498 AAGGTTGATAAAATGACTTCACTGAT 57.359 30.769 0.00 0.00 0.00 2.90
3271 3362 4.154375 CGTATGTATAGAGTGGCGACAGAT 59.846 45.833 0.00 0.00 44.46 2.90
3288 3379 5.172934 TCTTTTATTTGAGACCGCGTATGT 58.827 37.500 4.92 0.00 0.00 2.29
3328 3419 6.246919 ACTCAAGAAGCTACTCCACTAACTA 58.753 40.000 0.00 0.00 0.00 2.24
3330 3421 5.394224 ACTCAAGAAGCTACTCCACTAAC 57.606 43.478 0.00 0.00 0.00 2.34
3407 3498 3.497297 AAACAAGTCGGTTTTCACACC 57.503 42.857 0.00 0.00 37.72 4.16
3413 3504 3.940852 AGTTCCGTAAACAAGTCGGTTTT 59.059 39.130 0.00 0.00 43.94 2.43
3417 3508 3.310501 ACAAAGTTCCGTAAACAAGTCGG 59.689 43.478 0.00 0.00 44.76 4.79
3418 3509 4.033129 TGACAAAGTTCCGTAAACAAGTCG 59.967 41.667 1.40 0.00 40.56 4.18
3419 3510 5.473796 TGACAAAGTTCCGTAAACAAGTC 57.526 39.130 1.40 0.00 40.56 3.01
3420 3511 5.883503 TTGACAAAGTTCCGTAAACAAGT 57.116 34.783 1.40 0.00 40.56 3.16
3421 3512 6.262601 ACATTGACAAAGTTCCGTAAACAAG 58.737 36.000 0.00 0.00 40.56 3.16
3422 3513 6.094325 AGACATTGACAAAGTTCCGTAAACAA 59.906 34.615 0.00 0.00 40.56 2.83
3423 3514 5.587043 AGACATTGACAAAGTTCCGTAAACA 59.413 36.000 0.00 0.00 40.56 2.83
3424 3515 6.056428 AGACATTGACAAAGTTCCGTAAAC 57.944 37.500 0.00 0.00 38.21 2.01
3483 3574 8.538701 CCTATCTTCTTATGGCAGTCAATATCT 58.461 37.037 0.00 0.00 0.00 1.98
3533 3624 4.457466 TGTTCCTAACCAAGGTTCTCAAC 58.543 43.478 7.93 9.65 46.62 3.18
3564 3655 1.209747 GTCGTTCAGGCCTTTAGGGAT 59.790 52.381 0.00 0.00 37.23 3.85
3582 3673 1.739067 GCCCAACTCACACTATGGTC 58.261 55.000 0.00 0.00 0.00 4.02
3589 3680 1.298859 CCTAAGCGCCCAACTCACAC 61.299 60.000 2.29 0.00 0.00 3.82
3590 3681 1.003839 CCTAAGCGCCCAACTCACA 60.004 57.895 2.29 0.00 0.00 3.58
3661 3752 5.001232 GGTTCAGAGTATGCCAACTTGTTA 58.999 41.667 0.00 0.00 0.00 2.41
3670 3761 4.489306 AAACCTAGGTTCAGAGTATGCC 57.511 45.455 27.24 0.00 37.35 4.40
3685 3776 8.269317 CCAAAGAACTATACCCACATAAACCTA 58.731 37.037 0.00 0.00 0.00 3.08
3722 3813 8.465999 CATTTTCCACATAACCAATACTGCTAA 58.534 33.333 0.00 0.00 0.00 3.09
3812 3905 3.067106 CGTAGTTTCAGTGCCATGAAGT 58.933 45.455 0.00 0.00 40.16 3.01
3818 3911 2.224426 ACATTCCGTAGTTTCAGTGCCA 60.224 45.455 0.00 0.00 0.00 4.92
3893 3986 3.066064 GGTTGAATTGTAGCACACACACA 59.934 43.478 0.00 0.00 36.69 3.72
3894 3987 3.315191 AGGTTGAATTGTAGCACACACAC 59.685 43.478 0.00 0.00 36.69 3.82
3895 3988 3.550820 AGGTTGAATTGTAGCACACACA 58.449 40.909 0.00 0.00 36.69 3.72
3896 3989 4.755123 AGTAGGTTGAATTGTAGCACACAC 59.245 41.667 0.00 0.00 36.69 3.82
3925 4018 2.129823 GCAATGCCATCCGAATTGAG 57.870 50.000 0.00 0.00 33.96 3.02
3938 4031 4.768968 ACCCATTAATCAGATAGGCAATGC 59.231 41.667 0.00 0.00 0.00 3.56
3953 4047 5.475564 GGAGCAAGACAAAGTAACCCATTAA 59.524 40.000 0.00 0.00 0.00 1.40
3959 4053 3.251004 CAGTGGAGCAAGACAAAGTAACC 59.749 47.826 0.00 0.00 0.00 2.85
3964 4058 1.972872 ACCAGTGGAGCAAGACAAAG 58.027 50.000 18.40 0.00 0.00 2.77
4016 4110 9.696917 ACATGGAATAAAAGACAAAAAGTGATC 57.303 29.630 0.00 0.00 0.00 2.92
4186 4281 9.890629 AAAGATACTGTGATGTAAATGCTAGAA 57.109 29.630 0.00 0.00 0.00 2.10
4244 4339 9.871238 TTAAGTCTAGTATTCTTACAAGCCAAG 57.129 33.333 0.00 0.00 0.00 3.61
4414 4509 2.076100 CTTCTGCGTGTCCTAAATGCA 58.924 47.619 0.00 0.00 37.22 3.96
4480 4575 7.084486 GGTCTGAACATTATTTCACTTCAACC 58.916 38.462 0.00 0.00 32.02 3.77
4497 4592 2.561478 TAAACAGCTGGGGTCTGAAC 57.439 50.000 19.93 0.00 35.61 3.18
4584 4679 3.126858 TGACCAAATTCGTGCAGATTAGC 59.873 43.478 0.00 0.00 0.00 3.09
4672 4772 4.275936 GCAACCGCTTATTCCATGAAGTAT 59.724 41.667 0.00 0.00 34.30 2.12
4677 4777 1.064758 AGGCAACCGCTTATTCCATGA 60.065 47.619 0.00 0.00 38.60 3.07
4806 5089 3.241067 TCTTTCGTCAAACTATCCCCG 57.759 47.619 0.00 0.00 0.00 5.73
4820 5103 2.289547 ACGGTGATGTTGGTTTCTTTCG 59.710 45.455 0.00 0.00 0.00 3.46
4833 5116 2.009774 GAATCTGGTGGAACGGTGATG 58.990 52.381 0.00 0.00 38.12 3.07
4836 5119 2.076863 GAAGAATCTGGTGGAACGGTG 58.923 52.381 0.00 0.00 38.12 4.94
4839 5122 2.484264 GGTTGAAGAATCTGGTGGAACG 59.516 50.000 0.00 0.00 38.12 3.95
4857 5140 4.141287 TGCAGCTACATAACAACTTGGTT 58.859 39.130 0.00 0.00 34.81 3.67
4860 5143 8.800972 CATAAATTGCAGCTACATAACAACTTG 58.199 33.333 0.00 0.00 0.00 3.16
4909 5192 8.035394 TGTAAGTCCAGAATTCACACTAGATTC 58.965 37.037 8.44 0.00 0.00 2.52
4927 5210 6.177610 TGGTGGAATAAATCTGTGTAAGTCC 58.822 40.000 0.00 0.00 0.00 3.85
4936 5219 8.727910 CACATCATATCTGGTGGAATAAATCTG 58.272 37.037 0.00 0.00 37.85 2.90
5248 5533 7.318141 CAATGAAATATAGGGCCAAAGCTATG 58.682 38.462 6.18 0.00 39.73 2.23
5274 5559 7.306953 TGTTGTTTTGTTGTAACACTACCTTC 58.693 34.615 0.00 0.00 38.92 3.46
5298 5583 6.076981 ACCTCACTTTGCTTTGTCTAAATG 57.923 37.500 0.00 0.00 0.00 2.32
5445 5918 2.280628 CTCTAAATGGTGAGGTTCCGC 58.719 52.381 0.00 0.00 0.00 5.54
5446 5919 3.611766 ACTCTAAATGGTGAGGTTCCG 57.388 47.619 0.00 0.00 34.84 4.30
5472 5945 4.016444 TGTTCTTGCTCACCTTTTCTTGT 58.984 39.130 0.00 0.00 0.00 3.16
5505 5978 5.772521 AGGTGCATTCCGAATTAAATATGC 58.227 37.500 0.00 0.00 38.97 3.14
5514 5987 2.105477 AGCTCATAGGTGCATTCCGAAT 59.895 45.455 4.11 0.00 36.01 3.34
5549 6022 0.951558 ATTCAGGCGTGAACACAACC 59.048 50.000 23.02 5.94 45.58 3.77
5561 6034 3.826729 ACTCTACCCAAAACAATTCAGGC 59.173 43.478 0.00 0.00 0.00 4.85
5618 6091 4.154195 TGAAATTTGTTTAGAGGCGCTCTC 59.846 41.667 7.64 12.63 40.34 3.20
5666 6144 8.252417 ACATGATGCTAAATTAGTGCAAATTGA 58.748 29.630 0.00 0.00 40.24 2.57
5669 6147 6.982141 CCACATGATGCTAAATTAGTGCAAAT 59.018 34.615 0.00 0.00 40.24 2.32
5751 6229 4.938080 AGAATCAGTATAACTCAGCACCG 58.062 43.478 0.00 0.00 0.00 4.94
5782 6260 9.974750 GCAGTAAATAATCAAACTGAACTAGAC 57.025 33.333 0.00 0.00 41.47 2.59
5792 6270 7.948137 TCGCAAATTGCAGTAAATAATCAAAC 58.052 30.769 18.65 0.00 45.36 2.93
5842 6320 8.451748 GGCAACTAGAAACCTACAAAATAAGAG 58.548 37.037 0.00 0.00 0.00 2.85
5863 6341 0.109723 TCCTACACAAGTGGGGCAAC 59.890 55.000 5.08 0.00 45.75 4.17
6026 6504 4.588528 TGATCTTGCTTTGCTTACCCTTTT 59.411 37.500 0.00 0.00 0.00 2.27
6068 6546 5.667539 TGTTTCAAAATGTTTGAGGGACA 57.332 34.783 3.83 7.64 0.00 4.02
6071 6549 5.333263 GCGATTGTTTCAAAATGTTTGAGGG 60.333 40.000 3.83 0.00 0.00 4.30
6155 6634 9.408648 ACATAGGCTACAAATAAACTAAAGCAT 57.591 29.630 0.00 0.00 0.00 3.79
6161 6640 8.746052 ATGCAACATAGGCTACAAATAAACTA 57.254 30.769 0.00 0.00 0.00 2.24
6168 6647 7.257003 CAAACATATGCAACATAGGCTACAAA 58.743 34.615 1.58 0.00 0.00 2.83
6180 6659 9.169468 CGATAGTTAATTCCAAACATATGCAAC 57.831 33.333 1.58 0.00 0.00 4.17
6206 6685 3.005578 TGGCCCAATTACCGTGTTTTAAC 59.994 43.478 0.00 0.00 0.00 2.01
6256 6735 2.076100 TCAAGAATGACGTGTGCATCC 58.924 47.619 0.00 0.00 0.00 3.51
6344 6823 1.134877 ACATGCACAGTCCGAGATCTG 60.135 52.381 0.00 0.00 37.65 2.90
6396 6879 5.702065 TGCAATACCCCTCTACAAATACA 57.298 39.130 0.00 0.00 0.00 2.29
6442 6925 5.751243 TCCTGAAAGTTGTTCTTAACTGC 57.249 39.130 0.00 0.00 40.58 4.40
6452 6935 6.966534 ATCTGAACATTTCCTGAAAGTTGT 57.033 33.333 10.22 3.68 33.32 3.32
6453 6936 9.918630 ATAAATCTGAACATTTCCTGAAAGTTG 57.081 29.630 10.22 3.19 33.32 3.16
6566 7055 3.253188 CGCGGATTTAATTGGACATCCAT 59.747 43.478 0.34 0.00 46.97 3.41
6572 7061 1.668751 TCAGCGCGGATTTAATTGGAC 59.331 47.619 8.83 0.00 0.00 4.02
6578 7067 0.806241 GGGTTTCAGCGCGGATTTAA 59.194 50.000 11.95 0.00 0.00 1.52
6815 7304 6.309737 GCTTACTGAAGAAAGGCAATGAAATG 59.690 38.462 0.00 0.00 34.25 2.32
6959 7448 5.720371 TGAAATTTGGTGGTTACATCAGG 57.280 39.130 0.00 0.00 39.27 3.86
6960 7449 6.642131 CACTTGAAATTTGGTGGTTACATCAG 59.358 38.462 0.00 0.00 39.27 2.90
7017 7506 1.409661 GGGAAATACGCCAACTCCCAT 60.410 52.381 0.44 0.00 44.53 4.00
7295 7813 3.507622 CACCTCCTCTGGTTTTGGATTTC 59.492 47.826 0.00 0.00 38.45 2.17
7416 7934 0.525761 CCAAAACCATGGCCAGTACG 59.474 55.000 13.05 0.00 32.78 3.67
7521 8039 6.731292 AAGGAAGGCACAAAGACTAAAATT 57.269 33.333 0.00 0.00 30.53 1.82
7526 8044 5.067954 GGTTTAAGGAAGGCACAAAGACTA 58.932 41.667 0.00 0.00 30.53 2.59
7564 8082 1.133823 TCCACCAGCATGTCACTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
7599 8117 9.013229 ACGATTACAATATTGCCATCATACATT 57.987 29.630 15.48 0.00 0.00 2.71
7601 8119 7.977789 ACGATTACAATATTGCCATCATACA 57.022 32.000 15.48 0.00 0.00 2.29
7627 8145 7.182817 AGACAGTAGGCAGTATACATGAAAA 57.817 36.000 5.50 0.00 0.00 2.29
7634 8189 9.141400 GCATAATTTAGACAGTAGGCAGTATAC 57.859 37.037 0.00 0.00 0.00 1.47
7635 8190 8.311836 GGCATAATTTAGACAGTAGGCAGTATA 58.688 37.037 0.00 0.00 0.00 1.47
7636 8191 7.162082 GGCATAATTTAGACAGTAGGCAGTAT 58.838 38.462 0.00 0.00 0.00 2.12
7637 8192 6.522054 GGCATAATTTAGACAGTAGGCAGTA 58.478 40.000 0.00 0.00 0.00 2.74
7638 8193 5.368989 GGCATAATTTAGACAGTAGGCAGT 58.631 41.667 0.00 0.00 0.00 4.40
7639 8194 4.449068 CGGCATAATTTAGACAGTAGGCAG 59.551 45.833 0.00 0.00 0.00 4.85
7640 8195 4.141801 ACGGCATAATTTAGACAGTAGGCA 60.142 41.667 0.00 0.00 0.00 4.75
7641 8196 4.377897 ACGGCATAATTTAGACAGTAGGC 58.622 43.478 0.00 0.00 0.00 3.93
7642 8197 6.046593 TCAACGGCATAATTTAGACAGTAGG 58.953 40.000 0.00 0.00 0.00 3.18
7643 8198 7.715265 ATCAACGGCATAATTTAGACAGTAG 57.285 36.000 0.00 0.00 0.00 2.57
7645 8200 9.944376 ATATATCAACGGCATAATTTAGACAGT 57.056 29.630 0.00 0.00 0.00 3.55
7647 8202 9.083080 CGATATATCAACGGCATAATTTAGACA 57.917 33.333 13.11 0.00 0.00 3.41
7648 8203 9.084164 ACGATATATCAACGGCATAATTTAGAC 57.916 33.333 13.11 0.00 0.00 2.59
7649 8204 9.647797 AACGATATATCAACGGCATAATTTAGA 57.352 29.630 13.11 0.00 0.00 2.10
7712 8267 6.127675 ACCTGCTTGCAACAAAATTTCAAAAT 60.128 30.769 0.00 0.00 0.00 1.82
7933 8504 7.368480 GCTTATGTAGCTCTAGAGTACTACC 57.632 44.000 23.75 11.81 46.77 3.18
8110 9007 1.178276 GCGAGAGGGAGAGACAAAGA 58.822 55.000 0.00 0.00 0.00 2.52
8127 9024 0.798776 AAATGAACTTCTCGCTGGCG 59.201 50.000 8.80 8.80 41.35 5.69
8129 9026 2.426522 TGGAAATGAACTTCTCGCTGG 58.573 47.619 0.00 0.00 0.00 4.85
8221 9127 6.146837 CAGACATGTGAGTTTAGTTTCTCCTG 59.853 42.308 1.15 0.00 0.00 3.86
8377 9283 4.496175 CGCATCAGCAATTGCAGTATAACA 60.496 41.667 30.89 7.61 45.16 2.41
8391 9298 0.310543 GAACCAAACACGCATCAGCA 59.689 50.000 0.00 0.00 42.27 4.41
8399 9306 2.270275 TGCAAACAGAACCAAACACG 57.730 45.000 0.00 0.00 0.00 4.49
8409 9316 3.367600 GGCATTGATGACATGCAAACAGA 60.368 43.478 7.17 0.00 42.65 3.41
8410 9317 2.927477 GGCATTGATGACATGCAAACAG 59.073 45.455 7.17 0.00 42.65 3.16
8416 9323 1.337071 CCTCTGGCATTGATGACATGC 59.663 52.381 0.00 0.00 46.38 4.06
8584 9508 6.010294 AGGACATAATACACGAGATAACGG 57.990 41.667 0.00 0.00 37.61 4.44
8654 9578 3.267233 AGCCACTTGGATGCCCCA 61.267 61.111 0.00 0.00 44.93 4.96
8675 9599 0.764890 TTGCAGGCTACAGGTTGTCT 59.235 50.000 0.00 0.00 0.00 3.41
8710 9636 1.135859 GCTGGTGTTGAAGAGAATGCG 60.136 52.381 0.00 0.00 0.00 4.73
8730 9656 3.289836 TGCAGATTGGATAACACCATGG 58.710 45.455 11.19 11.19 39.82 3.66
8987 9930 6.798427 TTTACAGAGGATGTAGCTTCATCT 57.202 37.500 26.42 13.14 45.05 2.90
9069 10026 6.169094 TCTGAATTTGAGGCAACAAAAACAA 58.831 32.000 12.28 0.00 41.88 2.83
9071 10028 6.660887 TTCTGAATTTGAGGCAACAAAAAC 57.339 33.333 12.28 10.13 41.88 2.43
9074 10034 7.168972 CGTTTATTCTGAATTTGAGGCAACAAA 59.831 33.333 8.38 11.05 42.58 2.83
9082 10042 4.157656 TGCCCCGTTTATTCTGAATTTGAG 59.842 41.667 8.38 0.00 0.00 3.02
9103 10063 0.820871 AGGAATGAGGAGACGAGTGC 59.179 55.000 0.00 0.00 0.00 4.40
9107 10067 2.493675 CACTTGAGGAATGAGGAGACGA 59.506 50.000 0.00 0.00 0.00 4.20
9173 10133 6.389830 AGAACAGAATATGCACACACAAAA 57.610 33.333 0.00 0.00 0.00 2.44
9177 10137 5.362556 ACAAGAACAGAATATGCACACAC 57.637 39.130 0.00 0.00 0.00 3.82
9179 10139 5.082059 CGAACAAGAACAGAATATGCACAC 58.918 41.667 0.00 0.00 0.00 3.82
9181 10141 5.120830 AGACGAACAAGAACAGAATATGCAC 59.879 40.000 0.00 0.00 0.00 4.57
9214 10180 6.808829 TCACTTTCATTTTGCAACTCAAGAT 58.191 32.000 0.00 0.00 35.84 2.40
9276 10243 0.692476 ACATGACTAGGGCTTGTGCA 59.308 50.000 0.00 0.00 41.91 4.57
9277 10244 1.089920 CACATGACTAGGGCTTGTGC 58.910 55.000 15.75 0.00 35.55 4.57
9278 10245 2.079158 CACACATGACTAGGGCTTGTG 58.921 52.381 21.63 21.63 43.20 3.33
9292 10259 1.002888 CTCAGCTCCACTTCCACACAT 59.997 52.381 0.00 0.00 0.00 3.21
9482 10455 2.094752 CCTTACATTTTGCTTCCACCGG 60.095 50.000 0.00 0.00 0.00 5.28
9483 10456 2.671070 GCCTTACATTTTGCTTCCACCG 60.671 50.000 0.00 0.00 0.00 4.94
9485 10458 3.942130 AGCCTTACATTTTGCTTCCAC 57.058 42.857 0.00 0.00 0.00 4.02
9486 10459 4.917385 TCTAGCCTTACATTTTGCTTCCA 58.083 39.130 0.00 0.00 35.34 3.53
9487 10460 5.221126 CCATCTAGCCTTACATTTTGCTTCC 60.221 44.000 0.00 0.00 35.34 3.46
9488 10461 5.590259 TCCATCTAGCCTTACATTTTGCTTC 59.410 40.000 0.00 0.00 35.34 3.86
9490 10463 5.116084 TCCATCTAGCCTTACATTTTGCT 57.884 39.130 0.00 0.00 37.84 3.91
9494 10467 5.191722 TCAACCTCCATCTAGCCTTACATTT 59.808 40.000 0.00 0.00 0.00 2.32
9496 10469 4.298626 TCAACCTCCATCTAGCCTTACAT 58.701 43.478 0.00 0.00 0.00 2.29
9497 10470 3.719871 TCAACCTCCATCTAGCCTTACA 58.280 45.455 0.00 0.00 0.00 2.41
9498 10471 4.406003 TCTTCAACCTCCATCTAGCCTTAC 59.594 45.833 0.00 0.00 0.00 2.34
9499 10472 4.620723 TCTTCAACCTCCATCTAGCCTTA 58.379 43.478 0.00 0.00 0.00 2.69
9500 10473 3.454858 TCTTCAACCTCCATCTAGCCTT 58.545 45.455 0.00 0.00 0.00 4.35
9501 10474 3.121929 TCTTCAACCTCCATCTAGCCT 57.878 47.619 0.00 0.00 0.00 4.58
9502 10475 5.305644 TCTTATCTTCAACCTCCATCTAGCC 59.694 44.000 0.00 0.00 0.00 3.93
9503 10476 6.412362 TCTTATCTTCAACCTCCATCTAGC 57.588 41.667 0.00 0.00 0.00 3.42
9504 10477 8.869109 AGAATCTTATCTTCAACCTCCATCTAG 58.131 37.037 0.00 0.00 0.00 2.43
9505 10478 8.646004 CAGAATCTTATCTTCAACCTCCATCTA 58.354 37.037 0.00 0.00 0.00 1.98
9506 10479 7.507829 CAGAATCTTATCTTCAACCTCCATCT 58.492 38.462 0.00 0.00 0.00 2.90
9509 10482 5.431765 GCAGAATCTTATCTTCAACCTCCA 58.568 41.667 0.00 0.00 0.00 3.86
9510 10483 4.509600 CGCAGAATCTTATCTTCAACCTCC 59.490 45.833 0.00 0.00 0.00 4.30
9511 10484 4.025313 GCGCAGAATCTTATCTTCAACCTC 60.025 45.833 0.30 0.00 0.00 3.85
9512 10485 3.873952 GCGCAGAATCTTATCTTCAACCT 59.126 43.478 0.30 0.00 0.00 3.50
9517 10490 4.093408 TGTTGTGCGCAGAATCTTATCTTC 59.907 41.667 23.66 7.48 0.00 2.87
9519 10492 3.372206 GTGTTGTGCGCAGAATCTTATCT 59.628 43.478 23.66 0.00 0.00 1.98
9520 10493 3.125146 TGTGTTGTGCGCAGAATCTTATC 59.875 43.478 23.66 9.67 33.13 1.75
9522 10495 2.488952 TGTGTTGTGCGCAGAATCTTA 58.511 42.857 23.66 7.72 33.13 2.10
9532 10589 2.185867 TGTCACAAATGTGTTGTGCG 57.814 45.000 12.87 0.00 46.78 5.34
9536 10593 3.907788 CGTGCTATGTCACAAATGTGTTG 59.092 43.478 12.87 0.00 45.76 3.33
9548 10605 3.323136 CGCCGCTCGTGCTATGTC 61.323 66.667 7.97 0.00 36.97 3.06
9583 10647 4.785453 GAGCCGGACAGCAAGGGG 62.785 72.222 5.05 0.00 34.23 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.