Multiple sequence alignment - TraesCS6B01G410100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G410100 chr6B 100.000 3432 0 0 1400 4831 684386392 684389823 0.000000e+00 6338.0
1 TraesCS6B01G410100 chr6B 100.000 1080 0 0 1 1080 684384993 684386072 0.000000e+00 1995.0
2 TraesCS6B01G410100 chr6B 86.842 76 5 5 608 679 684385642 684385716 4.010000e-11 80.5
3 TraesCS6B01G410100 chr6A 94.524 1187 57 4 2363 3542 596164224 596165409 0.000000e+00 1825.0
4 TraesCS6B01G410100 chr6A 89.825 855 60 16 1447 2294 596163378 596164212 0.000000e+00 1072.0
5 TraesCS6B01G410100 chr6A 84.072 1105 101 30 3583 4653 596165413 596166476 0.000000e+00 996.0
6 TraesCS6B01G410100 chr6A 86.638 696 37 21 1 658 596162254 596162931 0.000000e+00 719.0
7 TraesCS6B01G410100 chr6A 83.420 386 29 15 700 1080 596162924 596163279 4.660000e-85 326.0
8 TraesCS6B01G410100 chr6D 95.477 1017 39 3 2363 3372 450642889 450643905 0.000000e+00 1616.0
9 TraesCS6B01G410100 chr6D 87.676 1282 102 24 3583 4829 450644130 450645390 0.000000e+00 1441.0
10 TraesCS6B01G410100 chr6D 89.062 640 52 9 1665 2294 450642246 450642877 0.000000e+00 778.0
11 TraesCS6B01G410100 chr6D 85.605 653 40 23 37 658 450640967 450641596 1.900000e-178 636.0
12 TraesCS6B01G410100 chr6D 88.057 494 44 9 1452 1941 76080302 76079820 5.420000e-159 571.0
13 TraesCS6B01G410100 chr6D 83.636 440 36 21 655 1080 450641551 450641968 9.810000e-102 381.0
14 TraesCS6B01G410100 chr6D 89.103 156 15 2 3388 3542 450643972 450644126 4.930000e-45 193.0
15 TraesCS6B01G410100 chr6D 96.226 106 4 0 1446 1551 450642063 450642168 1.790000e-39 174.0
16 TraesCS6B01G410100 chr6D 97.778 45 1 0 1036 1080 76080446 76080402 1.440000e-10 78.7
17 TraesCS6B01G410100 chr6D 95.000 40 1 1 4525 4563 39090421 39090460 1.450000e-05 62.1
18 TraesCS6B01G410100 chr3D 88.187 491 43 9 1449 1935 382820149 382820628 5.420000e-159 571.0
19 TraesCS6B01G410100 chr3D 88.187 491 43 9 1449 1935 554658834 554659313 5.420000e-159 571.0
20 TraesCS6B01G410100 chr3D 84.722 216 22 8 1842 2050 599649120 599649331 6.340000e-49 206.0
21 TraesCS6B01G410100 chr3D 88.060 67 6 2 1015 1080 382819987 382820052 1.440000e-10 78.7
22 TraesCS6B01G410100 chr3D 88.060 67 6 2 1015 1080 554658672 554658737 1.440000e-10 78.7
23 TraesCS6B01G410100 chr3D 97.222 36 1 0 4525 4560 472438649 472438614 1.450000e-05 62.1
24 TraesCS6B01G410100 chr1D 87.854 494 45 9 1452 1941 207148602 207148120 2.520000e-157 566.0
25 TraesCS6B01G410100 chr1D 97.778 45 1 0 1036 1080 207148746 207148702 1.440000e-10 78.7
26 TraesCS6B01G410100 chr7B 85.849 318 35 5 1817 2126 745863130 745862815 3.600000e-86 329.0
27 TraesCS6B01G410100 chr7B 85.535 318 36 5 1817 2126 745889035 745888720 1.680000e-84 324.0
28 TraesCS6B01G410100 chr7B 84.783 322 39 6 1813 2126 745923943 745923624 1.010000e-81 315.0
29 TraesCS6B01G410100 chr7B 84.591 318 39 5 1817 2126 745807129 745806814 1.690000e-79 307.0
30 TraesCS6B01G410100 chr7B 83.962 318 37 6 1817 2126 745841138 745840827 4.730000e-75 292.0
31 TraesCS6B01G410100 chr7B 94.149 188 11 0 303 490 33805613 33805426 2.200000e-73 287.0
32 TraesCS6B01G410100 chr7D 94.149 188 11 0 303 490 84178441 84178254 2.200000e-73 287.0
33 TraesCS6B01G410100 chr7A 93.085 188 13 0 303 490 85588906 85588719 4.760000e-70 276.0
34 TraesCS6B01G410100 chr7A 95.000 40 1 1 4525 4563 706703208 706703247 1.450000e-05 62.1
35 TraesCS6B01G410100 chr5B 85.514 214 24 4 1842 2050 508086576 508086365 2.930000e-52 217.0
36 TraesCS6B01G410100 chr5B 95.000 40 1 1 4525 4563 213247751 213247790 1.450000e-05 62.1
37 TraesCS6B01G410100 chr3B 95.000 40 1 1 4525 4563 666931245 666931284 1.450000e-05 62.1
38 TraesCS6B01G410100 chr3A 95.000 40 1 1 4525 4563 621628432 621628471 1.450000e-05 62.1
39 TraesCS6B01G410100 chr2D 95.000 40 1 1 4525 4563 116829652 116829613 1.450000e-05 62.1
40 TraesCS6B01G410100 chr1B 95.000 40 1 1 4525 4563 349754217 349754178 1.450000e-05 62.1
41 TraesCS6B01G410100 chr1B 91.304 46 0 3 4525 4567 157929035 157928991 5.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G410100 chr6B 684384993 684389823 4830 False 2804.500000 6338 95.614000 1 4831 3 chr6B.!!$F1 4830
1 TraesCS6B01G410100 chr6A 596162254 596166476 4222 False 987.600000 1825 87.695800 1 4653 5 chr6A.!!$F1 4652
2 TraesCS6B01G410100 chr6D 450640967 450645390 4423 False 745.571429 1616 89.540714 37 4829 7 chr6D.!!$F2 4792
3 TraesCS6B01G410100 chr6D 76079820 76080446 626 True 324.850000 571 92.917500 1036 1941 2 chr6D.!!$R1 905
4 TraesCS6B01G410100 chr3D 382819987 382820628 641 False 324.850000 571 88.123500 1015 1935 2 chr3D.!!$F2 920
5 TraesCS6B01G410100 chr3D 554658672 554659313 641 False 324.850000 571 88.123500 1015 1935 2 chr3D.!!$F3 920
6 TraesCS6B01G410100 chr1D 207148120 207148746 626 True 322.350000 566 92.816000 1036 1941 2 chr1D.!!$R1 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 613 0.397254 TCTAGCGAGGAAAGAGGGGG 60.397 60.0 0.0 0.0 0.00 5.40 F
1674 1757 0.034756 TGGGTCCTGTGTGTCGAATG 59.965 55.0 0.0 0.0 0.00 2.67 F
2105 2190 0.034756 TGTGGTCAACATGGTCTCGG 59.965 55.0 0.0 0.0 32.36 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1856 0.173708 GAGCGAGGAACGAGGTGAAT 59.826 55.000 0.00 0.00 45.77 2.57 R
3459 3611 1.688735 ACAGACAGTTAGCTCACAGCA 59.311 47.619 0.03 0.00 45.56 4.41 R
3885 4037 0.666274 TACAGCCAACTCTTCACGCG 60.666 55.000 3.53 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.009370 AGACCTAGAAAAACAGACTGGC 57.991 45.455 7.51 0.00 0.00 4.85
29 30 4.523083 AGAAAAACAGACTGGCACACTAA 58.477 39.130 7.51 0.00 0.00 2.24
257 282 3.132111 TCTTAGCATGCATACTGGAACGA 59.868 43.478 21.98 0.00 0.00 3.85
259 284 2.710377 AGCATGCATACTGGAACGAAA 58.290 42.857 21.98 0.00 0.00 3.46
260 285 3.081061 AGCATGCATACTGGAACGAAAA 58.919 40.909 21.98 0.00 0.00 2.29
261 286 3.119849 AGCATGCATACTGGAACGAAAAC 60.120 43.478 21.98 0.00 0.00 2.43
262 287 3.365868 GCATGCATACTGGAACGAAAACA 60.366 43.478 14.21 0.00 0.00 2.83
304 346 2.950309 GCGAGACCACCAAGATCTACTA 59.050 50.000 0.00 0.00 0.00 1.82
305 347 3.243134 GCGAGACCACCAAGATCTACTAC 60.243 52.174 0.00 0.00 0.00 2.73
306 348 4.200874 CGAGACCACCAAGATCTACTACT 58.799 47.826 0.00 0.00 0.00 2.57
535 578 1.085501 ACCGACAACCACGACAACAC 61.086 55.000 0.00 0.00 0.00 3.32
539 582 2.132762 GACAACCACGACAACACTAGG 58.867 52.381 0.00 0.00 0.00 3.02
541 584 1.125633 AACCACGACAACACTAGGGT 58.874 50.000 0.00 0.00 0.00 4.34
561 604 4.490899 GTAGATAGGGATCTAGCGAGGA 57.509 50.000 0.00 0.00 43.84 3.71
562 605 4.846040 GTAGATAGGGATCTAGCGAGGAA 58.154 47.826 0.00 0.00 43.84 3.36
564 607 4.340617 AGATAGGGATCTAGCGAGGAAAG 58.659 47.826 0.00 0.00 40.85 2.62
565 608 2.757894 AGGGATCTAGCGAGGAAAGA 57.242 50.000 0.00 0.00 0.00 2.52
566 609 2.593026 AGGGATCTAGCGAGGAAAGAG 58.407 52.381 0.00 0.00 0.00 2.85
570 613 0.397254 TCTAGCGAGGAAAGAGGGGG 60.397 60.000 0.00 0.00 0.00 5.40
571 614 0.397254 CTAGCGAGGAAAGAGGGGGA 60.397 60.000 0.00 0.00 0.00 4.81
643 686 4.493747 GGCGACGAGAACGGGGAG 62.494 72.222 0.00 0.00 44.46 4.30
645 688 3.744719 CGACGAGAACGGGGAGCA 61.745 66.667 0.00 0.00 44.46 4.26
646 689 2.126031 GACGAGAACGGGGAGCAC 60.126 66.667 0.00 0.00 44.46 4.40
647 690 2.600769 ACGAGAACGGGGAGCACT 60.601 61.111 0.00 0.00 44.46 4.40
648 691 2.182030 CGAGAACGGGGAGCACTC 59.818 66.667 0.00 0.00 35.72 3.51
649 692 2.182030 GAGAACGGGGAGCACTCG 59.818 66.667 0.00 0.00 0.00 4.18
650 693 2.282958 AGAACGGGGAGCACTCGA 60.283 61.111 7.73 0.00 0.00 4.04
651 694 2.182030 GAACGGGGAGCACTCGAG 59.818 66.667 11.84 11.84 0.00 4.04
652 695 3.991536 GAACGGGGAGCACTCGAGC 62.992 68.421 13.61 0.00 0.00 5.03
778 824 2.506438 CGAGGGCTCCGTTCGTTC 60.506 66.667 4.08 0.00 0.00 3.95
784 830 1.405121 GGGCTCCGTTCGTTCTTATGT 60.405 52.381 0.00 0.00 0.00 2.29
855 911 1.556451 GTTAGGGGCCCGTAAAAGAGA 59.444 52.381 33.05 12.38 0.00 3.10
857 913 0.546598 AGGGGCCCGTAAAAGAGATG 59.453 55.000 17.40 0.00 0.00 2.90
858 914 0.465642 GGGGCCCGTAAAAGAGATGG 60.466 60.000 17.79 0.00 0.00 3.51
889 948 2.018086 CCTCCTCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
890 949 1.541672 CTCCTCCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
891 950 2.015726 TCCTCCCTCCTCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
892 951 2.018086 CCTCCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
893 952 1.541672 CTCCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
894 953 2.015726 TCCCTCCTCCTCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
895 954 2.612251 CCTCCTCCTCCTCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
896 955 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
897 956 3.036959 TCCTCCTCCTCCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
898 957 3.368501 CCTCCTCCTCCTCCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
899 958 2.041405 CTCCTCCTCCTCCCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
986 1047 1.529796 GGCGGAGGAGAGAGAGAGA 59.470 63.158 0.00 0.00 0.00 3.10
988 1049 0.468226 GCGGAGGAGAGAGAGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
989 1050 1.541233 GCGGAGGAGAGAGAGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
990 1051 1.070758 CGGAGGAGAGAGAGAGAGAGG 59.929 61.905 0.00 0.00 0.00 3.69
991 1052 1.421646 GGAGGAGAGAGAGAGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
992 1053 1.421646 GAGGAGAGAGAGAGAGAGGGG 59.578 61.905 0.00 0.00 0.00 4.79
993 1054 1.010793 AGGAGAGAGAGAGAGAGGGGA 59.989 57.143 0.00 0.00 0.00 4.81
1048 1109 3.612004 GCCGGAGATATTCTACAACGAGG 60.612 52.174 5.05 0.00 0.00 4.63
1443 1504 3.432326 CCCGGGTTATCTCCTTCTTCTTG 60.432 52.174 14.18 0.00 0.00 3.02
1444 1505 3.197983 CCGGGTTATCTCCTTCTTCTTGT 59.802 47.826 0.00 0.00 0.00 3.16
1445 1506 4.323562 CCGGGTTATCTCCTTCTTCTTGTT 60.324 45.833 0.00 0.00 0.00 2.83
1446 1507 4.870991 CGGGTTATCTCCTTCTTCTTGTTC 59.129 45.833 0.00 0.00 0.00 3.18
1447 1508 5.337652 CGGGTTATCTCCTTCTTCTTGTTCT 60.338 44.000 0.00 0.00 0.00 3.01
1448 1509 6.477253 GGGTTATCTCCTTCTTCTTGTTCTT 58.523 40.000 0.00 0.00 0.00 2.52
1449 1510 6.596106 GGGTTATCTCCTTCTTCTTGTTCTTC 59.404 42.308 0.00 0.00 0.00 2.87
1450 1511 7.390823 GGTTATCTCCTTCTTCTTGTTCTTCT 58.609 38.462 0.00 0.00 0.00 2.85
1451 1512 7.880713 GGTTATCTCCTTCTTCTTGTTCTTCTT 59.119 37.037 0.00 0.00 0.00 2.52
1452 1513 8.931775 GTTATCTCCTTCTTCTTGTTCTTCTTC 58.068 37.037 0.00 0.00 0.00 2.87
1453 1514 6.739331 TCTCCTTCTTCTTGTTCTTCTTCT 57.261 37.500 0.00 0.00 0.00 2.85
1454 1515 7.130681 TCTCCTTCTTCTTGTTCTTCTTCTT 57.869 36.000 0.00 0.00 0.00 2.52
1460 1521 8.655651 TTCTTCTTGTTCTTCTTCTTCTTCTC 57.344 34.615 0.00 0.00 0.00 2.87
1556 1617 1.456705 ATCGGTCAGCCTCCTCTCC 60.457 63.158 0.00 0.00 0.00 3.71
1571 1632 4.314440 TCCACGCTCACCCACAGC 62.314 66.667 0.00 0.00 0.00 4.40
1581 1642 1.915489 TCACCCACAGCACCATAGAAT 59.085 47.619 0.00 0.00 0.00 2.40
1618 1700 2.886523 TGCTTTGACAGAGAAACCATGG 59.113 45.455 11.19 11.19 0.00 3.66
1619 1701 2.887152 GCTTTGACAGAGAAACCATGGT 59.113 45.455 13.00 13.00 0.00 3.55
1620 1702 3.057946 GCTTTGACAGAGAAACCATGGTC 60.058 47.826 20.07 6.67 0.00 4.02
1621 1703 2.859165 TGACAGAGAAACCATGGTCC 57.141 50.000 20.07 13.38 0.00 4.46
1622 1704 2.338809 TGACAGAGAAACCATGGTCCT 58.661 47.619 20.07 18.16 0.00 3.85
1623 1705 2.038952 TGACAGAGAAACCATGGTCCTG 59.961 50.000 20.07 22.39 0.00 3.86
1631 1713 1.296392 CCATGGTCCTGCGTCTTGA 59.704 57.895 2.57 0.00 0.00 3.02
1658 1740 1.202290 GCTGGCGTTTACAATCATGGG 60.202 52.381 0.00 0.00 0.00 4.00
1659 1741 2.091541 CTGGCGTTTACAATCATGGGT 58.908 47.619 0.00 0.00 0.00 4.51
1661 1743 1.404035 GGCGTTTACAATCATGGGTCC 59.596 52.381 0.00 0.00 0.00 4.46
1666 1749 4.079253 GTTTACAATCATGGGTCCTGTGT 58.921 43.478 0.00 0.00 0.00 3.72
1667 1750 2.205022 ACAATCATGGGTCCTGTGTG 57.795 50.000 0.00 0.00 0.00 3.82
1668 1751 1.425066 ACAATCATGGGTCCTGTGTGT 59.575 47.619 0.00 0.00 0.00 3.72
1669 1752 2.086869 CAATCATGGGTCCTGTGTGTC 58.913 52.381 0.00 0.00 0.00 3.67
1674 1757 0.034756 TGGGTCCTGTGTGTCGAATG 59.965 55.000 0.00 0.00 0.00 2.67
1771 1854 0.393537 GTCCATGCTTGGTGAGGAGG 60.394 60.000 17.54 0.00 44.06 4.30
1772 1855 0.547471 TCCATGCTTGGTGAGGAGGA 60.547 55.000 17.54 0.00 44.06 3.71
1773 1856 0.329261 CCATGCTTGGTGAGGAGGAA 59.671 55.000 10.48 0.00 38.30 3.36
1774 1857 1.064166 CCATGCTTGGTGAGGAGGAAT 60.064 52.381 10.48 0.00 38.30 3.01
1807 1891 1.429423 GCTCTTATGGGCGTGTTGC 59.571 57.895 0.00 0.00 45.38 4.17
1817 1901 1.276844 GCGTGTTGCTGTGTCACTC 59.723 57.895 4.27 0.00 41.73 3.51
1827 1911 1.869767 CTGTGTCACTCAGGTTTCTGC 59.130 52.381 4.27 0.00 40.69 4.26
1848 1932 4.676546 GCTTGAGAGCTTCAGTTTTGTTT 58.323 39.130 0.00 0.00 45.65 2.83
1852 1936 4.704540 TGAGAGCTTCAGTTTTGTTTTCCA 59.295 37.500 0.00 0.00 0.00 3.53
1921 2005 0.811616 GCAGACATGGGCGAGGTAAG 60.812 60.000 0.00 0.00 0.00 2.34
1926 2010 1.069765 ATGGGCGAGGTAAGATGCG 59.930 57.895 0.00 0.00 0.00 4.73
1944 2028 3.057548 TGCTGCGGCACTGGATTG 61.058 61.111 18.37 0.00 44.28 2.67
1952 2036 1.817099 GCACTGGATTGGCGGAGAG 60.817 63.158 0.00 0.00 0.00 3.20
2021 2106 8.507249 GTCTTATGCAATTCTTCTTGTTACAGT 58.493 33.333 0.00 0.00 0.00 3.55
2090 2175 7.030075 TGATAATAATGTGCATGACTTGTGG 57.970 36.000 0.00 0.00 0.00 4.17
2105 2190 0.034756 TGTGGTCAACATGGTCTCGG 59.965 55.000 0.00 0.00 32.36 4.63
2106 2191 0.034896 GTGGTCAACATGGTCTCGGT 59.965 55.000 0.00 0.00 0.00 4.69
2175 2260 4.588899 TGTCTGGTGGGAAAATATGAGTG 58.411 43.478 0.00 0.00 0.00 3.51
2239 2331 7.822334 TCTCTATAATAATTGTATGGTTGCCGG 59.178 37.037 0.00 0.00 0.00 6.13
2268 2362 1.003116 CTATTGCGCATGCTGAACCTC 60.003 52.381 12.75 0.00 43.34 3.85
2270 2364 1.855213 TTGCGCATGCTGAACCTCAC 61.855 55.000 12.75 0.00 43.34 3.51
2324 2418 4.844349 ATACAACTGTATGGTCTGCCTT 57.156 40.909 1.53 0.00 39.57 4.35
2325 2419 2.783135 ACAACTGTATGGTCTGCCTTG 58.217 47.619 0.00 0.00 35.27 3.61
2326 2420 2.086869 CAACTGTATGGTCTGCCTTGG 58.913 52.381 0.00 0.00 35.27 3.61
2327 2421 1.362224 ACTGTATGGTCTGCCTTGGT 58.638 50.000 0.00 0.00 35.27 3.67
2328 2422 2.546899 ACTGTATGGTCTGCCTTGGTA 58.453 47.619 0.00 0.00 35.27 3.25
2329 2423 2.910319 ACTGTATGGTCTGCCTTGGTAA 59.090 45.455 0.00 0.00 35.27 2.85
2330 2424 3.523564 ACTGTATGGTCTGCCTTGGTAAT 59.476 43.478 0.00 0.00 35.27 1.89
2331 2425 3.879295 CTGTATGGTCTGCCTTGGTAATG 59.121 47.826 0.00 0.00 35.27 1.90
2332 2426 3.521531 TGTATGGTCTGCCTTGGTAATGA 59.478 43.478 0.00 0.00 35.27 2.57
2333 2427 3.959495 ATGGTCTGCCTTGGTAATGAT 57.041 42.857 0.00 0.00 35.27 2.45
2334 2428 5.368230 TGTATGGTCTGCCTTGGTAATGATA 59.632 40.000 0.00 0.00 35.27 2.15
2335 2429 4.853468 TGGTCTGCCTTGGTAATGATAA 57.147 40.909 0.00 0.00 35.27 1.75
2336 2430 5.387113 TGGTCTGCCTTGGTAATGATAAT 57.613 39.130 0.00 0.00 35.27 1.28
2337 2431 6.508030 TGGTCTGCCTTGGTAATGATAATA 57.492 37.500 0.00 0.00 35.27 0.98
2338 2432 7.090319 TGGTCTGCCTTGGTAATGATAATAT 57.910 36.000 0.00 0.00 35.27 1.28
2339 2433 6.942005 TGGTCTGCCTTGGTAATGATAATATG 59.058 38.462 0.00 0.00 35.27 1.78
2340 2434 6.127897 GGTCTGCCTTGGTAATGATAATATGC 60.128 42.308 0.00 0.00 0.00 3.14
2341 2435 6.656693 GTCTGCCTTGGTAATGATAATATGCT 59.343 38.462 0.00 0.00 0.00 3.79
2342 2436 6.656270 TCTGCCTTGGTAATGATAATATGCTG 59.344 38.462 0.00 0.00 0.00 4.41
2343 2437 6.306199 TGCCTTGGTAATGATAATATGCTGT 58.694 36.000 0.00 0.00 0.00 4.40
2344 2438 7.457561 TGCCTTGGTAATGATAATATGCTGTA 58.542 34.615 0.00 0.00 0.00 2.74
2345 2439 8.108999 TGCCTTGGTAATGATAATATGCTGTAT 58.891 33.333 0.00 0.00 0.00 2.29
2346 2440 8.400947 GCCTTGGTAATGATAATATGCTGTATG 58.599 37.037 0.00 0.00 0.00 2.39
2347 2441 8.896744 CCTTGGTAATGATAATATGCTGTATGG 58.103 37.037 0.00 0.00 0.00 2.74
2348 2442 9.453572 CTTGGTAATGATAATATGCTGTATGGT 57.546 33.333 0.00 0.00 0.00 3.55
2349 2443 9.448438 TTGGTAATGATAATATGCTGTATGGTC 57.552 33.333 0.00 0.00 0.00 4.02
2350 2444 8.825774 TGGTAATGATAATATGCTGTATGGTCT 58.174 33.333 0.00 0.00 0.00 3.85
2351 2445 9.102757 GGTAATGATAATATGCTGTATGGTCTG 57.897 37.037 0.00 0.00 0.00 3.51
2352 2446 7.621428 AATGATAATATGCTGTATGGTCTGC 57.379 36.000 0.00 0.00 0.00 4.26
2353 2447 5.491070 TGATAATATGCTGTATGGTCTGCC 58.509 41.667 0.00 0.00 0.00 4.85
2368 2462 5.324409 TGGTCTGCCATTTCAGTAATCTTT 58.676 37.500 0.00 0.00 40.46 2.52
2440 2535 7.921786 TGCTGTTACTTGAGCTAATATGTTT 57.078 32.000 0.00 0.00 36.11 2.83
2463 2558 2.299326 ATAATGCATCTTCCAGGGCC 57.701 50.000 0.00 0.00 0.00 5.80
2604 2699 3.665745 ATGCCCTTTGTTGACAATGTC 57.334 42.857 6.41 6.41 35.55 3.06
2652 2747 7.453393 ACAAGTCTTCTCATGAACCAAGATTA 58.547 34.615 12.32 0.00 0.00 1.75
2700 2795 3.851458 AACGTATCCCTTGGGTTATCC 57.149 47.619 5.51 0.00 0.00 2.59
2873 2968 1.168714 GATTTGCTGGTGGAGTGGTC 58.831 55.000 0.00 0.00 0.00 4.02
3109 3204 4.405116 TGATGACGATGATGGTGATGAA 57.595 40.909 0.00 0.00 0.00 2.57
3137 3232 3.369147 CGATGACCAAACAGTAAGCTCAG 59.631 47.826 0.00 0.00 0.00 3.35
3189 3284 7.930513 ACATTTTGAGCTTTACTGCTTTTAC 57.069 32.000 0.00 0.00 44.17 2.01
3209 3304 7.584122 TTTACTCTCTGTGTCTTGTCTACTT 57.416 36.000 0.00 0.00 0.00 2.24
3219 3314 5.346281 GTGTCTTGTCTACTTCTTCATTCCG 59.654 44.000 0.00 0.00 0.00 4.30
3234 3329 2.042686 TTCCGCCTTGATCAATGGAG 57.957 50.000 21.24 18.39 0.00 3.86
3243 3338 5.709164 GCCTTGATCAATGGAGCTATATGTT 59.291 40.000 21.24 0.00 0.00 2.71
3245 3340 7.555554 GCCTTGATCAATGGAGCTATATGTTAT 59.444 37.037 21.24 0.00 0.00 1.89
3286 3381 7.011295 CACAAACCAGTTGCATAAGAAATGTTT 59.989 33.333 0.00 0.00 41.31 2.83
3287 3382 7.011295 ACAAACCAGTTGCATAAGAAATGTTTG 59.989 33.333 0.00 0.00 41.31 2.93
3292 3394 9.853555 CCAGTTGCATAAGAAATGTTTGTAATA 57.146 29.630 0.00 0.00 0.00 0.98
3340 3442 8.696043 TCTCTTATTATGGGATGGAAATGTTG 57.304 34.615 0.00 0.00 0.00 3.33
3372 3474 5.330233 TGTGGTGATCTTTCTACCTGTCTA 58.670 41.667 0.00 0.00 35.51 2.59
3375 3477 5.163405 TGGTGATCTTTCTACCTGTCTATGC 60.163 44.000 0.00 0.00 35.51 3.14
3376 3478 5.293560 GTGATCTTTCTACCTGTCTATGCC 58.706 45.833 0.00 0.00 0.00 4.40
3389 3535 3.077359 GTCTATGCCATATTCCCTGTGC 58.923 50.000 0.00 0.00 0.00 4.57
3390 3536 2.710471 TCTATGCCATATTCCCTGTGCA 59.290 45.455 0.00 0.00 0.00 4.57
3418 3570 7.500559 AGCATCTTCAGTTCTACCCAATAATTC 59.499 37.037 0.00 0.00 0.00 2.17
3420 3572 7.510675 TCTTCAGTTCTACCCAATAATTCCT 57.489 36.000 0.00 0.00 0.00 3.36
3421 3573 7.338710 TCTTCAGTTCTACCCAATAATTCCTG 58.661 38.462 0.00 0.00 0.00 3.86
3430 3582 8.561769 TCTACCCAATAATTCCTGGATGTTTAA 58.438 33.333 0.00 0.00 34.35 1.52
3433 3585 8.485392 ACCCAATAATTCCTGGATGTTTAATTG 58.515 33.333 0.00 4.50 34.35 2.32
3434 3586 7.442062 CCCAATAATTCCTGGATGTTTAATTGC 59.558 37.037 0.00 0.00 34.35 3.56
3438 3590 7.486407 AATTCCTGGATGTTTAATTGCTCTT 57.514 32.000 0.00 0.00 0.00 2.85
3457 3609 6.072508 TGCTCTTAAAACTGTTGCTATCTTGG 60.073 38.462 0.00 0.00 0.00 3.61
3459 3611 7.148171 GCTCTTAAAACTGTTGCTATCTTGGAT 60.148 37.037 0.00 0.00 0.00 3.41
3462 3614 3.641434 ACTGTTGCTATCTTGGATGCT 57.359 42.857 0.00 0.00 0.00 3.79
3511 3663 7.755591 TCAAGAATCAACTTGCATCATACTTC 58.244 34.615 0.00 0.00 44.52 3.01
3533 3685 8.087750 ACTTCTCTTATTCTGTTCTCTCACTTG 58.912 37.037 0.00 0.00 0.00 3.16
3534 3686 7.531857 TCTCTTATTCTGTTCTCTCACTTGT 57.468 36.000 0.00 0.00 0.00 3.16
3535 3687 8.637196 TCTCTTATTCTGTTCTCTCACTTGTA 57.363 34.615 0.00 0.00 0.00 2.41
3536 3688 8.735315 TCTCTTATTCTGTTCTCTCACTTGTAG 58.265 37.037 0.00 0.00 0.00 2.74
3537 3689 8.410673 TCTTATTCTGTTCTCTCACTTGTAGT 57.589 34.615 0.00 0.00 0.00 2.73
3540 3692 6.465439 TTCTGTTCTCTCACTTGTAGTTCA 57.535 37.500 0.00 0.00 0.00 3.18
3541 3693 6.656632 TCTGTTCTCTCACTTGTAGTTCAT 57.343 37.500 0.00 0.00 0.00 2.57
3543 3695 6.925718 TCTGTTCTCTCACTTGTAGTTCATTG 59.074 38.462 0.00 0.00 0.00 2.82
3544 3696 5.466728 TGTTCTCTCACTTGTAGTTCATTGC 59.533 40.000 0.00 0.00 0.00 3.56
3546 3698 5.858381 TCTCTCACTTGTAGTTCATTGCTT 58.142 37.500 0.00 0.00 0.00 3.91
3547 3699 6.291377 TCTCTCACTTGTAGTTCATTGCTTT 58.709 36.000 0.00 0.00 0.00 3.51
3548 3700 6.425114 TCTCTCACTTGTAGTTCATTGCTTTC 59.575 38.462 0.00 0.00 0.00 2.62
3549 3701 6.291377 TCTCACTTGTAGTTCATTGCTTTCT 58.709 36.000 0.00 0.00 0.00 2.52
3550 3702 6.767902 TCTCACTTGTAGTTCATTGCTTTCTT 59.232 34.615 0.00 0.00 0.00 2.52
3551 3703 7.283127 TCTCACTTGTAGTTCATTGCTTTCTTT 59.717 33.333 0.00 0.00 0.00 2.52
3552 3704 7.195646 TCACTTGTAGTTCATTGCTTTCTTTG 58.804 34.615 0.00 0.00 0.00 2.77
3553 3705 7.066887 TCACTTGTAGTTCATTGCTTTCTTTGA 59.933 33.333 0.00 0.00 0.00 2.69
3554 3706 7.701924 CACTTGTAGTTCATTGCTTTCTTTGAA 59.298 33.333 0.00 0.00 0.00 2.69
3555 3707 8.250332 ACTTGTAGTTCATTGCTTTCTTTGAAA 58.750 29.630 0.00 0.00 30.51 2.69
3556 3708 8.994429 TTGTAGTTCATTGCTTTCTTTGAAAA 57.006 26.923 0.00 0.00 30.51 2.29
3557 3709 8.633075 TGTAGTTCATTGCTTTCTTTGAAAAG 57.367 30.769 0.00 0.00 38.91 2.27
3558 3710 8.465999 TGTAGTTCATTGCTTTCTTTGAAAAGA 58.534 29.630 1.31 1.31 42.91 2.52
3559 3711 7.761651 AGTTCATTGCTTTCTTTGAAAAGAC 57.238 32.000 4.99 0.00 44.18 3.01
3560 3712 7.550712 AGTTCATTGCTTTCTTTGAAAAGACT 58.449 30.769 4.99 0.00 44.18 3.24
3561 3713 8.037166 AGTTCATTGCTTTCTTTGAAAAGACTT 58.963 29.630 4.99 0.00 44.18 3.01
3562 3714 9.301153 GTTCATTGCTTTCTTTGAAAAGACTTA 57.699 29.630 4.99 0.00 44.18 2.24
3568 3720 8.784043 TGCTTTCTTTGAAAAGACTTATAGTCC 58.216 33.333 4.99 0.00 46.18 3.85
3569 3721 8.784043 GCTTTCTTTGAAAAGACTTATAGTCCA 58.216 33.333 4.99 0.00 46.18 4.02
3573 3725 8.730680 TCTTTGAAAAGACTTATAGTCCATTGC 58.269 33.333 1.31 0.00 46.18 3.56
3574 3726 8.635765 TTTGAAAAGACTTATAGTCCATTGCT 57.364 30.769 3.33 0.00 46.18 3.91
3575 3727 7.615582 TGAAAAGACTTATAGTCCATTGCTG 57.384 36.000 3.33 0.00 46.18 4.41
3576 3728 7.394016 TGAAAAGACTTATAGTCCATTGCTGA 58.606 34.615 3.33 0.00 46.18 4.26
3577 3729 8.049117 TGAAAAGACTTATAGTCCATTGCTGAT 58.951 33.333 3.33 0.00 46.18 2.90
3578 3730 8.443953 AAAAGACTTATAGTCCATTGCTGATC 57.556 34.615 3.33 0.00 46.18 2.92
3579 3731 6.737720 AGACTTATAGTCCATTGCTGATCA 57.262 37.500 0.00 0.00 46.18 2.92
3580 3732 7.313740 AGACTTATAGTCCATTGCTGATCAT 57.686 36.000 0.00 0.00 46.18 2.45
3581 3733 8.427902 AGACTTATAGTCCATTGCTGATCATA 57.572 34.615 0.00 0.00 46.18 2.15
3592 3744 6.882678 CCATTGCTGATCATATGATTGTCCTA 59.117 38.462 19.11 6.47 34.37 2.94
3594 3746 6.676990 TGCTGATCATATGATTGTCCTACT 57.323 37.500 19.11 0.00 34.37 2.57
3645 3797 9.657419 CTGGCAGTGATACATGATAATAATGTA 57.343 33.333 6.28 0.28 42.92 2.29
3704 3856 1.416401 AGGTCGAACAAGAGGCAGAAA 59.584 47.619 1.87 0.00 0.00 2.52
3767 3919 3.693578 GGAAAAAGGAGCAGATGAGGAAG 59.306 47.826 0.00 0.00 0.00 3.46
3803 3955 1.339134 CGCGGACACGAAATACACG 59.661 57.895 0.00 0.00 44.60 4.49
3837 3989 0.037605 AACCCGCTTCTAAGTCGGTG 60.038 55.000 17.93 13.64 41.14 4.94
3840 3992 1.607251 CCCGCTTCTAAGTCGGTGTTT 60.607 52.381 17.93 0.00 41.14 2.83
3885 4037 3.809832 TCAGAAGCAGCAAGAGTGTTTAC 59.190 43.478 0.00 0.00 0.00 2.01
3887 4039 0.868406 AGCAGCAAGAGTGTTTACGC 59.132 50.000 0.00 0.00 0.00 4.42
3888 4040 0.451135 GCAGCAAGAGTGTTTACGCG 60.451 55.000 3.53 3.53 0.00 6.01
3914 4066 1.084370 GTTGGCTGTATCGCGCTTCT 61.084 55.000 5.56 0.00 0.00 2.85
3921 4073 2.526077 TGTATCGCGCTTCTGTTGTAG 58.474 47.619 5.56 0.00 0.00 2.74
3940 4107 5.292765 TGTAGTCTTAAGATATGCAGCAGC 58.707 41.667 8.75 0.00 42.57 5.25
3955 4122 1.829222 AGCAGCTTTGGCAAATGCTAT 59.171 42.857 29.78 19.84 42.82 2.97
4010 4178 4.889995 TGACATGGTTGGTTGTTTCATGTA 59.110 37.500 7.16 0.00 45.47 2.29
4059 4227 6.016610 ACAATTTTGTAACTGGCAGTAATCGT 60.017 34.615 22.37 9.12 40.16 3.73
4077 4247 7.872993 AGTAATCGTGATGATATACCCTTTGTG 59.127 37.037 0.00 0.00 35.84 3.33
4078 4248 5.862678 TCGTGATGATATACCCTTTGTGA 57.137 39.130 0.00 0.00 0.00 3.58
4184 4355 9.100895 CAAACGCAACATAAAAATTTATGGTTG 57.899 29.630 22.93 21.97 45.99 3.77
4204 4380 2.670905 TGTGTGTATTGTATGCACGAGC 59.329 45.455 0.00 0.00 46.98 5.03
4217 4393 3.687572 GCACGAGCAGATTGAATGAAT 57.312 42.857 0.00 0.00 41.58 2.57
4218 4394 3.360533 GCACGAGCAGATTGAATGAATG 58.639 45.455 0.00 0.00 41.58 2.67
4219 4395 3.064408 GCACGAGCAGATTGAATGAATGA 59.936 43.478 0.00 0.00 41.58 2.57
4220 4396 4.437794 GCACGAGCAGATTGAATGAATGAA 60.438 41.667 0.00 0.00 41.58 2.57
4221 4397 5.732528 GCACGAGCAGATTGAATGAATGAAT 60.733 40.000 0.00 0.00 41.58 2.57
4222 4398 6.263344 CACGAGCAGATTGAATGAATGAATT 58.737 36.000 0.00 0.00 0.00 2.17
4223 4399 7.412063 CACGAGCAGATTGAATGAATGAATTA 58.588 34.615 0.00 0.00 0.00 1.40
4224 4400 7.375280 CACGAGCAGATTGAATGAATGAATTAC 59.625 37.037 0.00 0.00 0.00 1.89
4234 4410 8.741101 TGAATGAATGAATTACCTGTTTTTCG 57.259 30.769 0.00 0.00 0.00 3.46
4236 4412 9.834628 GAATGAATGAATTACCTGTTTTTCGTA 57.165 29.630 0.00 0.00 0.00 3.43
4266 4442 8.846943 AAGAAATAATGCATGGTATATGTCGA 57.153 30.769 0.00 0.00 0.00 4.20
4278 4454 5.094134 GGTATATGTCGAAATCGGAGCTAC 58.906 45.833 2.63 0.00 40.29 3.58
4304 4480 0.716108 CCGTTGCGCTTGACTAAGAG 59.284 55.000 9.73 0.00 35.92 2.85
4351 4527 1.743772 GCGCATCCTCTACAACATGGT 60.744 52.381 0.30 0.00 0.00 3.55
4353 4529 2.352651 CGCATCCTCTACAACATGGTTG 59.647 50.000 7.51 7.51 0.00 3.77
4361 4538 2.671619 AACATGGTTGGGTCGGCG 60.672 61.111 0.00 0.00 0.00 6.46
4362 4539 4.715523 ACATGGTTGGGTCGGCGG 62.716 66.667 7.21 0.00 0.00 6.13
4364 4541 3.961414 ATGGTTGGGTCGGCGGTT 61.961 61.111 7.21 0.00 0.00 4.44
4366 4543 4.941309 GGTTGGGTCGGCGGTTGT 62.941 66.667 7.21 0.00 0.00 3.32
4374 4551 4.728102 CGGCGGTTGTCTGCGGTA 62.728 66.667 0.00 0.00 46.03 4.02
4375 4552 2.813908 GGCGGTTGTCTGCGGTAG 60.814 66.667 0.00 0.00 46.03 3.18
4406 4583 2.505405 CTTGCTCATGGAGATGGGATG 58.495 52.381 0.00 0.00 30.60 3.51
4438 4615 1.893786 CTCGAGGGAGAAGTGGTGG 59.106 63.158 3.91 0.00 43.27 4.61
4439 4616 0.900647 CTCGAGGGAGAAGTGGTGGT 60.901 60.000 3.91 0.00 43.27 4.16
4440 4617 1.185618 TCGAGGGAGAAGTGGTGGTG 61.186 60.000 0.00 0.00 0.00 4.17
4463 4640 2.643272 GTCAGCGTGACACCTCGA 59.357 61.111 11.62 0.00 46.22 4.04
4468 4645 0.960861 AGCGTGACACCTCGATGAGA 60.961 55.000 0.00 0.00 0.00 3.27
4469 4646 0.524392 GCGTGACACCTCGATGAGAG 60.524 60.000 0.00 0.00 46.44 3.20
4480 4657 0.673437 CGATGAGAGGCCTCTTCTCC 59.327 60.000 35.48 22.76 40.61 3.71
4481 4658 1.786937 GATGAGAGGCCTCTTCTCCA 58.213 55.000 35.48 27.41 40.61 3.86
4502 4695 4.458642 CCATGGTATTGTGTGTGTCATTCA 59.541 41.667 2.57 0.00 0.00 2.57
4515 4708 0.537143 TCATTCAGCGGTTTGTGGCT 60.537 50.000 0.00 0.00 40.90 4.75
4556 4749 6.315393 TCGTTAATTAACTGGGCAATTCTCTC 59.685 38.462 22.57 0.00 34.12 3.20
4562 4755 4.657814 ACTGGGCAATTCTCTCCTTTTA 57.342 40.909 0.00 0.00 0.00 1.52
4565 4758 4.934356 TGGGCAATTCTCTCCTTTTACAT 58.066 39.130 0.00 0.00 0.00 2.29
4567 4760 5.196695 GGGCAATTCTCTCCTTTTACATCT 58.803 41.667 0.00 0.00 0.00 2.90
4573 4766 7.602517 ATTCTCTCCTTTTACATCTGTTTCG 57.397 36.000 0.00 0.00 0.00 3.46
4611 4804 1.135831 TGTACCACGCATGCAAATTCG 60.136 47.619 19.57 2.13 0.00 3.34
4617 4810 1.191096 CGCATGCAAATTCGCCTAAC 58.809 50.000 19.57 0.00 0.00 2.34
4626 4819 4.258543 CAAATTCGCCTAACCTAACCTCA 58.741 43.478 0.00 0.00 0.00 3.86
4631 4824 2.354821 CGCCTAACCTAACCTCATTTGC 59.645 50.000 0.00 0.00 0.00 3.68
4635 4828 3.418684 AACCTAACCTCATTTGCGAGT 57.581 42.857 0.00 0.00 0.00 4.18
4636 4829 2.973945 ACCTAACCTCATTTGCGAGTC 58.026 47.619 0.00 0.00 0.00 3.36
4646 4839 3.873361 TCATTTGCGAGTCATTCAGATCC 59.127 43.478 0.00 0.00 0.00 3.36
4663 4856 4.155462 CAGATCCAGACAAGTTCAACATGG 59.845 45.833 0.00 0.00 0.00 3.66
4674 4867 1.028130 TCAACATGGCGAAACTGCAA 58.972 45.000 0.00 0.00 36.28 4.08
4708 4901 5.582950 AATGGGATAAGGTTAGCATGCTA 57.417 39.130 23.52 23.52 0.00 3.49
4744 4937 3.620488 TCTCCCATGCATTCCACTAAAC 58.380 45.455 0.00 0.00 0.00 2.01
4752 4945 1.131126 CATTCCACTAAACTGGCAGCG 59.869 52.381 15.89 3.23 0.00 5.18
4775 4969 5.855925 CGCATTCAGTTAACTTTGCATACAA 59.144 36.000 23.96 3.37 0.00 2.41
4781 4975 5.845953 CAGTTAACTTTGCATACAACGACAG 59.154 40.000 5.07 0.00 34.87 3.51
4789 4983 3.628032 TGCATACAACGACAGAAAACCAA 59.372 39.130 0.00 0.00 0.00 3.67
4814 5008 2.663826 AAGCGAGGTTTGTTTTTGCA 57.336 40.000 0.00 0.00 0.00 4.08
4817 5011 4.314740 AGCGAGGTTTGTTTTTGCAATA 57.685 36.364 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.339438 CCAGCATTAGTGTGCCAGTCT 60.339 52.381 0.00 0.00 46.19 3.24
17 18 0.692476 TCCAGCATTAGTGTGCCAGT 59.308 50.000 0.00 0.00 46.19 4.00
22 23 3.261580 TGAACGATCCAGCATTAGTGTG 58.738 45.455 0.00 0.00 0.00 3.82
97 106 6.920210 GGCAATCTGCTTCTGTTATTTTATCC 59.080 38.462 0.00 0.00 44.28 2.59
164 176 5.316167 TCTCACTGCATTGTCCAGTTAATT 58.684 37.500 3.77 0.00 41.34 1.40
294 336 5.131475 ACTCCTCCGAGAAGTAGTAGATCTT 59.869 44.000 0.00 0.00 38.52 2.40
304 346 0.905337 CCCCAACTCCTCCGAGAAGT 60.905 60.000 0.00 0.00 38.52 3.01
305 347 1.901085 CCCCAACTCCTCCGAGAAG 59.099 63.158 0.00 0.00 38.52 2.85
306 348 2.291043 GCCCCAACTCCTCCGAGAA 61.291 63.158 0.00 0.00 38.52 2.87
365 407 0.391661 AGCGCATCCAGTACAACAGG 60.392 55.000 11.47 0.00 0.00 4.00
367 409 1.155889 CAAGCGCATCCAGTACAACA 58.844 50.000 11.47 0.00 0.00 3.33
535 578 4.409574 TCGCTAGATCCCTATCTACCCTAG 59.590 50.000 0.00 0.00 42.61 3.02
539 582 3.200385 TCCTCGCTAGATCCCTATCTACC 59.800 52.174 0.00 0.00 42.61 3.18
541 584 5.251005 TCTTTCCTCGCTAGATCCCTATCTA 59.749 44.000 0.00 0.00 42.61 1.98
558 601 1.307430 GCTCCTCCCCCTCTTTCCT 60.307 63.158 0.00 0.00 0.00 3.36
561 604 0.045469 ATCTGCTCCTCCCCCTCTTT 59.955 55.000 0.00 0.00 0.00 2.52
562 605 0.399806 GATCTGCTCCTCCCCCTCTT 60.400 60.000 0.00 0.00 0.00 2.85
564 607 2.206536 CGATCTGCTCCTCCCCCTC 61.207 68.421 0.00 0.00 0.00 4.30
565 608 2.123077 CGATCTGCTCCTCCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
566 609 0.759436 TAACGATCTGCTCCTCCCCC 60.759 60.000 0.00 0.00 0.00 5.40
570 613 1.112113 TGGGTAACGATCTGCTCCTC 58.888 55.000 0.00 0.00 37.60 3.71
571 614 1.414181 CATGGGTAACGATCTGCTCCT 59.586 52.381 0.00 0.00 29.61 3.69
621 664 3.533691 CGTTCTCGTCGCCGAAGC 61.534 66.667 0.00 0.00 43.69 3.86
622 665 2.874780 CCGTTCTCGTCGCCGAAG 60.875 66.667 0.00 0.00 43.69 3.79
623 666 4.409218 CCCGTTCTCGTCGCCGAA 62.409 66.667 0.00 0.00 43.69 4.30
626 669 4.493747 CTCCCCGTTCTCGTCGCC 62.494 72.222 0.00 0.00 35.01 5.54
628 671 3.744719 TGCTCCCCGTTCTCGTCG 61.745 66.667 0.00 0.00 35.01 5.12
629 672 2.126031 GTGCTCCCCGTTCTCGTC 60.126 66.667 0.00 0.00 35.01 4.20
630 673 2.600769 AGTGCTCCCCGTTCTCGT 60.601 61.111 0.00 0.00 35.01 4.18
631 674 2.182030 GAGTGCTCCCCGTTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
632 675 2.182030 CGAGTGCTCCCCGTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
633 676 2.282958 TCGAGTGCTCCCCGTTCT 60.283 61.111 0.00 0.00 0.00 3.01
634 677 2.182030 CTCGAGTGCTCCCCGTTC 59.818 66.667 3.62 0.00 0.00 3.95
635 678 4.070552 GCTCGAGTGCTCCCCGTT 62.071 66.667 15.13 0.00 0.00 4.44
674 717 4.856607 GAGCGCTCCCCGTTCTCG 62.857 72.222 27.22 0.00 42.89 4.04
720 766 3.722147 CCGTCTAGGGTTGATTCATCTG 58.278 50.000 0.00 0.00 35.97 2.90
772 818 0.322322 ACGGCCCACATAAGAACGAA 59.678 50.000 0.00 0.00 0.00 3.85
773 819 0.390603 CACGGCCCACATAAGAACGA 60.391 55.000 0.00 0.00 0.00 3.85
774 820 1.366111 CCACGGCCCACATAAGAACG 61.366 60.000 0.00 0.00 0.00 3.95
775 821 1.029947 CCCACGGCCCACATAAGAAC 61.030 60.000 0.00 0.00 0.00 3.01
778 824 2.828549 GCCCACGGCCCACATAAG 60.829 66.667 0.00 0.00 44.06 1.73
820 866 0.744414 CTAACAGGCCACATCCACGG 60.744 60.000 5.01 0.00 0.00 4.94
821 867 0.744414 CCTAACAGGCCACATCCACG 60.744 60.000 5.01 0.00 0.00 4.94
823 869 1.570857 CCCCTAACAGGCCACATCCA 61.571 60.000 5.01 0.00 32.73 3.41
834 890 1.279846 CTCTTTTACGGGCCCCTAACA 59.720 52.381 18.66 7.73 0.00 2.41
979 1040 1.528309 CGCCTCCCCTCTCTCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
986 1047 2.841988 GCATCTCGCCTCCCCTCT 60.842 66.667 0.00 0.00 32.94 3.69
1405 1466 2.743928 GGTCAGCCTCACCGCTTG 60.744 66.667 0.00 0.00 36.82 4.01
1406 1467 4.021925 GGGTCAGCCTCACCGCTT 62.022 66.667 0.00 0.00 36.82 4.68
1443 1504 3.654414 TGCGGAGAAGAAGAAGAAGAAC 58.346 45.455 0.00 0.00 0.00 3.01
1444 1505 3.306364 CCTGCGGAGAAGAAGAAGAAGAA 60.306 47.826 5.10 0.00 0.00 2.52
1445 1506 2.232452 CCTGCGGAGAAGAAGAAGAAGA 59.768 50.000 5.10 0.00 0.00 2.87
1446 1507 2.615869 CCTGCGGAGAAGAAGAAGAAG 58.384 52.381 5.10 0.00 0.00 2.85
1447 1508 1.338200 GCCTGCGGAGAAGAAGAAGAA 60.338 52.381 5.10 0.00 0.00 2.52
1448 1509 0.247736 GCCTGCGGAGAAGAAGAAGA 59.752 55.000 5.10 0.00 0.00 2.87
1449 1510 1.080995 CGCCTGCGGAGAAGAAGAAG 61.081 60.000 5.10 0.00 35.56 2.85
1450 1511 1.079819 CGCCTGCGGAGAAGAAGAA 60.080 57.895 5.10 0.00 35.56 2.52
1451 1512 1.938657 CTCGCCTGCGGAGAAGAAGA 61.939 60.000 5.10 0.00 40.25 2.87
1452 1513 1.518133 CTCGCCTGCGGAGAAGAAG 60.518 63.158 5.10 0.00 40.25 2.85
1453 1514 2.573869 CTCGCCTGCGGAGAAGAA 59.426 61.111 5.10 0.00 40.25 2.52
1454 1515 3.452786 CCTCGCCTGCGGAGAAGA 61.453 66.667 5.10 3.17 40.25 2.87
1460 1521 4.292178 GGAGATCCTCGCCTGCGG 62.292 72.222 12.06 2.50 40.25 5.69
1556 1617 3.349006 GTGCTGTGGGTGAGCGTG 61.349 66.667 0.00 0.00 39.47 5.34
1571 1632 7.865875 CAGAGAATCGAGTAATTCTATGGTG 57.134 40.000 11.52 0.58 45.07 4.17
1581 1642 5.405571 GTCAAAGCAACAGAGAATCGAGTAA 59.594 40.000 0.00 0.00 42.67 2.24
1618 1700 2.476854 GCAATTCATCAAGACGCAGGAC 60.477 50.000 0.00 0.00 0.00 3.85
1619 1701 1.739466 GCAATTCATCAAGACGCAGGA 59.261 47.619 0.00 0.00 0.00 3.86
1620 1702 1.741706 AGCAATTCATCAAGACGCAGG 59.258 47.619 0.00 0.00 0.00 4.85
1621 1703 2.477357 CCAGCAATTCATCAAGACGCAG 60.477 50.000 0.00 0.00 0.00 5.18
1622 1704 1.469703 CCAGCAATTCATCAAGACGCA 59.530 47.619 0.00 0.00 0.00 5.24
1623 1705 1.796617 GCCAGCAATTCATCAAGACGC 60.797 52.381 0.00 0.00 0.00 5.19
1631 1713 3.932545 TTGTAAACGCCAGCAATTCAT 57.067 38.095 0.00 0.00 0.00 2.57
1658 1740 0.602638 TGCCATTCGACACACAGGAC 60.603 55.000 0.00 0.00 0.00 3.85
1659 1741 0.320683 CTGCCATTCGACACACAGGA 60.321 55.000 0.00 0.00 0.00 3.86
1661 1743 1.300971 CCCTGCCATTCGACACACAG 61.301 60.000 0.00 0.00 0.00 3.66
1666 1749 2.359850 GCACCCTGCCATTCGACA 60.360 61.111 0.00 0.00 37.42 4.35
1667 1750 3.499737 CGCACCCTGCCATTCGAC 61.500 66.667 0.00 0.00 41.12 4.20
1668 1751 4.776322 CCGCACCCTGCCATTCGA 62.776 66.667 0.00 0.00 41.12 3.71
1771 1854 1.000145 GCGAGGAACGAGGTGAATTC 59.000 55.000 0.00 0.00 45.77 2.17
1772 1855 0.608640 AGCGAGGAACGAGGTGAATT 59.391 50.000 0.00 0.00 45.77 2.17
1773 1856 0.173708 GAGCGAGGAACGAGGTGAAT 59.826 55.000 0.00 0.00 45.77 2.57
1774 1857 0.894184 AGAGCGAGGAACGAGGTGAA 60.894 55.000 0.00 0.00 45.77 3.18
1801 1885 0.940126 CCTGAGTGACACAGCAACAC 59.060 55.000 8.59 0.00 34.47 3.32
1807 1891 1.869767 GCAGAAACCTGAGTGACACAG 59.130 52.381 8.59 2.89 33.56 3.66
1827 1911 5.745769 GGAAAACAAAACTGAAGCTCTCAAG 59.254 40.000 0.00 0.00 32.17 3.02
1848 1932 0.955428 GCAACATCTGCGAGGTGGAA 60.955 55.000 2.62 0.00 42.37 3.53
1889 1973 2.283173 TCTGCGAGCAGGAGGTCA 60.283 61.111 22.93 1.72 43.75 4.02
1944 2028 0.875059 CTGGAACAAAACTCTCCGCC 59.125 55.000 0.00 0.00 38.70 6.13
1947 2031 3.416156 AGCATCTGGAACAAAACTCTCC 58.584 45.455 0.00 0.00 38.70 3.71
1952 2036 5.634859 CCAAACATAGCATCTGGAACAAAAC 59.365 40.000 0.00 0.00 38.70 2.43
2090 2175 1.270094 TGACACCGAGACCATGTTGAC 60.270 52.381 0.00 0.00 0.00 3.18
2175 2260 5.712152 ATGTTCAGGTTCTTTGGATTCAC 57.288 39.130 0.00 0.00 0.00 3.18
2239 2331 1.331756 CATGCGCAATAGAAGACCACC 59.668 52.381 17.11 0.00 0.00 4.61
2303 2397 4.517285 CAAGGCAGACCATACAGTTGTAT 58.483 43.478 0.00 0.00 41.58 2.29
2304 2398 3.307410 CCAAGGCAGACCATACAGTTGTA 60.307 47.826 0.00 0.00 39.06 2.41
2305 2399 2.553028 CCAAGGCAGACCATACAGTTGT 60.553 50.000 0.00 0.00 39.06 3.32
2306 2400 2.086869 CCAAGGCAGACCATACAGTTG 58.913 52.381 0.00 0.00 39.06 3.16
2307 2401 1.705186 ACCAAGGCAGACCATACAGTT 59.295 47.619 0.00 0.00 39.06 3.16
2308 2402 1.362224 ACCAAGGCAGACCATACAGT 58.638 50.000 0.00 0.00 39.06 3.55
2309 2403 3.627395 TTACCAAGGCAGACCATACAG 57.373 47.619 0.00 0.00 39.06 2.74
2310 2404 3.521531 TCATTACCAAGGCAGACCATACA 59.478 43.478 0.00 0.00 39.06 2.29
2311 2405 4.150897 TCATTACCAAGGCAGACCATAC 57.849 45.455 0.00 0.00 39.06 2.39
2312 2406 6.508030 TTATCATTACCAAGGCAGACCATA 57.492 37.500 0.00 0.00 39.06 2.74
2313 2407 3.959495 ATCATTACCAAGGCAGACCAT 57.041 42.857 0.00 0.00 39.06 3.55
2314 2408 4.853468 TTATCATTACCAAGGCAGACCA 57.147 40.909 0.00 0.00 39.06 4.02
2315 2409 6.127897 GCATATTATCATTACCAAGGCAGACC 60.128 42.308 0.00 0.00 0.00 3.85
2316 2410 6.656693 AGCATATTATCATTACCAAGGCAGAC 59.343 38.462 0.00 0.00 0.00 3.51
2317 2411 6.656270 CAGCATATTATCATTACCAAGGCAGA 59.344 38.462 0.00 0.00 0.00 4.26
2318 2412 6.432162 ACAGCATATTATCATTACCAAGGCAG 59.568 38.462 0.00 0.00 0.00 4.85
2319 2413 6.306199 ACAGCATATTATCATTACCAAGGCA 58.694 36.000 0.00 0.00 0.00 4.75
2320 2414 6.824305 ACAGCATATTATCATTACCAAGGC 57.176 37.500 0.00 0.00 0.00 4.35
2321 2415 8.896744 CCATACAGCATATTATCATTACCAAGG 58.103 37.037 0.00 0.00 0.00 3.61
2322 2416 9.453572 ACCATACAGCATATTATCATTACCAAG 57.546 33.333 0.00 0.00 0.00 3.61
2323 2417 9.448438 GACCATACAGCATATTATCATTACCAA 57.552 33.333 0.00 0.00 0.00 3.67
2324 2418 8.825774 AGACCATACAGCATATTATCATTACCA 58.174 33.333 0.00 0.00 0.00 3.25
2325 2419 9.102757 CAGACCATACAGCATATTATCATTACC 57.897 37.037 0.00 0.00 0.00 2.85
2326 2420 8.607459 GCAGACCATACAGCATATTATCATTAC 58.393 37.037 0.00 0.00 0.00 1.89
2327 2421 7.770433 GGCAGACCATACAGCATATTATCATTA 59.230 37.037 0.00 0.00 35.26 1.90
2328 2422 6.600822 GGCAGACCATACAGCATATTATCATT 59.399 38.462 0.00 0.00 35.26 2.57
2329 2423 6.118170 GGCAGACCATACAGCATATTATCAT 58.882 40.000 0.00 0.00 35.26 2.45
2330 2424 5.012975 TGGCAGACCATACAGCATATTATCA 59.987 40.000 0.00 0.00 42.67 2.15
2331 2425 5.491070 TGGCAGACCATACAGCATATTATC 58.509 41.667 0.00 0.00 42.67 1.75
2332 2426 5.503634 TGGCAGACCATACAGCATATTAT 57.496 39.130 0.00 0.00 42.67 1.28
2333 2427 4.972751 TGGCAGACCATACAGCATATTA 57.027 40.909 0.00 0.00 42.67 0.98
2334 2428 3.862877 TGGCAGACCATACAGCATATT 57.137 42.857 0.00 0.00 42.67 1.28
2346 2440 5.644644 CAAAGATTACTGAAATGGCAGACC 58.355 41.667 0.00 0.00 39.20 3.85
2347 2441 5.098211 GCAAAGATTACTGAAATGGCAGAC 58.902 41.667 0.00 0.00 39.20 3.51
2348 2442 5.012239 AGCAAAGATTACTGAAATGGCAGA 58.988 37.500 0.00 0.00 39.20 4.26
2349 2443 5.320549 AGCAAAGATTACTGAAATGGCAG 57.679 39.130 0.00 0.00 41.63 4.85
2350 2444 5.243507 TGAAGCAAAGATTACTGAAATGGCA 59.756 36.000 0.00 0.00 0.00 4.92
2351 2445 5.713025 TGAAGCAAAGATTACTGAAATGGC 58.287 37.500 0.00 0.00 0.00 4.40
2352 2446 8.461222 TGTATGAAGCAAAGATTACTGAAATGG 58.539 33.333 0.00 0.00 0.00 3.16
2353 2447 9.844790 TTGTATGAAGCAAAGATTACTGAAATG 57.155 29.630 0.00 0.00 0.00 2.32
2354 2448 9.846248 GTTGTATGAAGCAAAGATTACTGAAAT 57.154 29.630 0.00 0.00 0.00 2.17
2355 2449 9.066892 AGTTGTATGAAGCAAAGATTACTGAAA 57.933 29.630 0.00 0.00 0.00 2.69
2356 2450 8.506437 CAGTTGTATGAAGCAAAGATTACTGAA 58.494 33.333 0.00 0.00 0.00 3.02
2357 2451 7.361201 GCAGTTGTATGAAGCAAAGATTACTGA 60.361 37.037 0.00 0.00 0.00 3.41
2358 2452 6.744537 GCAGTTGTATGAAGCAAAGATTACTG 59.255 38.462 0.00 0.00 0.00 2.74
2359 2453 6.430925 TGCAGTTGTATGAAGCAAAGATTACT 59.569 34.615 0.00 0.00 31.42 2.24
2360 2454 6.611381 TGCAGTTGTATGAAGCAAAGATTAC 58.389 36.000 0.00 0.00 31.42 1.89
2361 2455 6.816134 TGCAGTTGTATGAAGCAAAGATTA 57.184 33.333 0.00 0.00 31.42 1.75
2368 2462 2.672874 GTCGATGCAGTTGTATGAAGCA 59.327 45.455 0.00 0.00 39.79 3.91
2440 2535 5.253798 AGGCCCTGGAAGATGCATTATTATA 59.746 40.000 0.00 0.00 34.07 0.98
2448 2543 1.348008 CCTAGGCCCTGGAAGATGCA 61.348 60.000 0.00 0.00 34.07 3.96
2625 2720 4.687901 TGGTTCATGAGAAGACTTGTCA 57.312 40.909 16.57 16.57 37.36 3.58
2652 2747 7.713764 AAATAGTTTCACGTACTTTAACCGT 57.286 32.000 0.00 0.00 34.71 4.83
2700 2795 4.497473 TCAAGGTTAAGAATTGGTTGCG 57.503 40.909 0.00 0.00 0.00 4.85
2873 2968 4.384056 CTTACCTATGAGGCCAGTCAATG 58.616 47.826 5.01 0.00 39.63 2.82
3109 3204 2.297701 ACTGTTTGGTCATCGTTGCTT 58.702 42.857 0.00 0.00 0.00 3.91
3189 3284 5.957842 AGAAGTAGACAAGACACAGAGAG 57.042 43.478 0.00 0.00 0.00 3.20
3209 3304 3.348647 TTGATCAAGGCGGAATGAAGA 57.651 42.857 3.38 0.00 0.00 2.87
3219 3314 5.251764 ACATATAGCTCCATTGATCAAGGC 58.748 41.667 14.55 14.10 0.00 4.35
3234 3329 7.969536 ACACATCAACTGGATAACATATAGC 57.030 36.000 0.00 0.00 33.95 2.97
3243 3338 5.703592 GGTTTGTGTACACATCAACTGGATA 59.296 40.000 29.20 12.63 41.52 2.59
3245 3340 3.880490 GGTTTGTGTACACATCAACTGGA 59.120 43.478 29.20 13.82 41.52 3.86
3286 3381 6.952773 GGCCTATTTGGTCATGTTATTACA 57.047 37.500 0.00 0.00 40.97 2.41
3340 3442 8.027189 GGTAGAAAGATCACCACAAAAATAACC 58.973 37.037 0.00 0.00 32.32 2.85
3372 3474 2.688902 ATGCACAGGGAATATGGCAT 57.311 45.000 4.88 4.88 37.17 4.40
3375 3477 3.144657 TGCTATGCACAGGGAATATGG 57.855 47.619 0.00 0.00 31.71 2.74
3376 3478 4.586884 AGATGCTATGCACAGGGAATATG 58.413 43.478 0.00 0.00 43.04 1.78
3389 3535 5.282055 TGGGTAGAACTGAAGATGCTATG 57.718 43.478 0.00 0.00 0.00 2.23
3390 3536 5.957771 TTGGGTAGAACTGAAGATGCTAT 57.042 39.130 0.00 0.00 0.00 2.97
3418 3570 8.306761 AGTTTTAAGAGCAATTAAACATCCAGG 58.693 33.333 5.81 0.00 35.05 4.45
3420 3572 8.637986 ACAGTTTTAAGAGCAATTAAACATCCA 58.362 29.630 5.81 0.00 35.05 3.41
3421 3573 9.476202 AACAGTTTTAAGAGCAATTAAACATCC 57.524 29.630 5.81 0.00 35.05 3.51
3430 3582 7.693969 AGATAGCAACAGTTTTAAGAGCAAT 57.306 32.000 0.00 0.00 0.00 3.56
3433 3585 6.149474 TCCAAGATAGCAACAGTTTTAAGAGC 59.851 38.462 0.00 0.00 0.00 4.09
3434 3586 7.672983 TCCAAGATAGCAACAGTTTTAAGAG 57.327 36.000 0.00 0.00 0.00 2.85
3438 3590 5.945784 AGCATCCAAGATAGCAACAGTTTTA 59.054 36.000 0.00 0.00 0.00 1.52
3457 3609 2.928757 CAGACAGTTAGCTCACAGCATC 59.071 50.000 0.03 0.00 45.56 3.91
3459 3611 1.688735 ACAGACAGTTAGCTCACAGCA 59.311 47.619 0.03 0.00 45.56 4.41
3462 3614 1.688735 AGCACAGACAGTTAGCTCACA 59.311 47.619 0.03 0.00 0.00 3.58
3511 3663 8.519526 ACTACAAGTGAGAGAACAGAATAAGAG 58.480 37.037 0.00 0.00 0.00 2.85
3533 3685 8.746751 GTCTTTTCAAAGAAAGCAATGAACTAC 58.253 33.333 3.51 0.00 45.77 2.73
3534 3686 8.686334 AGTCTTTTCAAAGAAAGCAATGAACTA 58.314 29.630 3.51 0.00 45.77 2.24
3535 3687 7.550712 AGTCTTTTCAAAGAAAGCAATGAACT 58.449 30.769 3.51 0.00 45.77 3.01
3536 3688 7.761651 AGTCTTTTCAAAGAAAGCAATGAAC 57.238 32.000 3.51 0.00 45.77 3.18
3543 3695 8.784043 TGGACTATAAGTCTTTTCAAAGAAAGC 58.216 33.333 3.51 0.00 45.77 3.51
3547 3699 8.730680 GCAATGGACTATAAGTCTTTTCAAAGA 58.269 33.333 6.99 0.00 44.46 2.52
3548 3700 8.734386 AGCAATGGACTATAAGTCTTTTCAAAG 58.266 33.333 6.99 0.00 44.46 2.77
3549 3701 8.514594 CAGCAATGGACTATAAGTCTTTTCAAA 58.485 33.333 6.99 0.00 44.46 2.69
3550 3702 7.882791 TCAGCAATGGACTATAAGTCTTTTCAA 59.117 33.333 6.99 0.00 44.46 2.69
3551 3703 7.394016 TCAGCAATGGACTATAAGTCTTTTCA 58.606 34.615 6.99 0.00 44.46 2.69
3552 3704 7.849804 TCAGCAATGGACTATAAGTCTTTTC 57.150 36.000 6.99 0.00 44.46 2.29
3553 3705 8.049117 TGATCAGCAATGGACTATAAGTCTTTT 58.951 33.333 6.99 0.00 44.46 2.27
3554 3706 7.568349 TGATCAGCAATGGACTATAAGTCTTT 58.432 34.615 6.99 0.00 44.46 2.52
3555 3707 7.129457 TGATCAGCAATGGACTATAAGTCTT 57.871 36.000 6.99 0.00 44.46 3.01
3556 3708 6.737720 TGATCAGCAATGGACTATAAGTCT 57.262 37.500 6.99 0.00 44.46 3.24
3557 3709 9.096160 CATATGATCAGCAATGGACTATAAGTC 57.904 37.037 0.09 0.00 44.32 3.01
3558 3710 8.819845 TCATATGATCAGCAATGGACTATAAGT 58.180 33.333 0.00 0.00 0.00 2.24
3559 3711 9.833917 ATCATATGATCAGCAATGGACTATAAG 57.166 33.333 12.62 0.00 0.00 1.73
3561 3713 9.609346 CAATCATATGATCAGCAATGGACTATA 57.391 33.333 18.44 0.00 32.75 1.31
3562 3714 8.107729 ACAATCATATGATCAGCAATGGACTAT 58.892 33.333 18.44 0.00 32.75 2.12
3563 3715 7.455891 ACAATCATATGATCAGCAATGGACTA 58.544 34.615 18.44 0.00 32.75 2.59
3564 3716 6.304624 ACAATCATATGATCAGCAATGGACT 58.695 36.000 18.44 0.00 32.75 3.85
3565 3717 6.349115 GGACAATCATATGATCAGCAATGGAC 60.349 42.308 18.44 10.00 32.75 4.02
3566 3718 5.708697 GGACAATCATATGATCAGCAATGGA 59.291 40.000 18.44 0.00 32.75 3.41
3567 3719 5.710567 AGGACAATCATATGATCAGCAATGG 59.289 40.000 18.44 0.00 32.75 3.16
3568 3720 6.819397 AGGACAATCATATGATCAGCAATG 57.181 37.500 18.44 13.67 32.75 2.82
3569 3721 7.687388 AGTAGGACAATCATATGATCAGCAAT 58.313 34.615 18.44 6.59 32.75 3.56
3570 3722 7.071069 AGTAGGACAATCATATGATCAGCAA 57.929 36.000 18.44 1.25 32.75 3.91
3571 3723 6.676990 AGTAGGACAATCATATGATCAGCA 57.323 37.500 18.44 0.39 32.75 4.41
3572 3724 8.256605 ACATAGTAGGACAATCATATGATCAGC 58.743 37.037 18.44 10.16 32.75 4.26
3573 3725 9.583765 CACATAGTAGGACAATCATATGATCAG 57.416 37.037 18.44 15.65 32.75 2.90
3574 3726 9.312904 TCACATAGTAGGACAATCATATGATCA 57.687 33.333 18.44 0.00 32.75 2.92
3577 3729 9.312904 TCATCACATAGTAGGACAATCATATGA 57.687 33.333 8.10 8.10 0.00 2.15
3578 3730 9.933723 TTCATCACATAGTAGGACAATCATATG 57.066 33.333 0.00 0.00 0.00 1.78
3580 3732 8.090831 GCTTCATCACATAGTAGGACAATCATA 58.909 37.037 0.00 0.00 0.00 2.15
3581 3733 6.933521 GCTTCATCACATAGTAGGACAATCAT 59.066 38.462 0.00 0.00 0.00 2.45
3592 3744 3.614092 CACCAAGGCTTCATCACATAGT 58.386 45.455 0.00 0.00 0.00 2.12
3594 3746 2.025981 AGCACCAAGGCTTCATCACATA 60.026 45.455 0.00 0.00 42.71 2.29
3655 3807 2.168936 CCATATGTGCCAACCTGCATTT 59.831 45.455 1.24 0.00 44.30 2.32
3704 3856 2.213499 CTGCCGTTCTTCTTGTTCACT 58.787 47.619 0.00 0.00 0.00 3.41
3788 3940 1.363885 GCCCCGTGTATTTCGTGTCC 61.364 60.000 0.00 0.00 0.00 4.02
3803 3955 3.744719 GTTTTCCGCTTCCGCCCC 61.745 66.667 0.00 0.00 0.00 5.80
3837 3989 6.013842 AGCTAAACTAAATGACTGCCAAAC 57.986 37.500 0.00 0.00 0.00 2.93
3840 3992 5.070001 ACAAGCTAAACTAAATGACTGCCA 58.930 37.500 0.00 0.00 0.00 4.92
3885 4037 0.666274 TACAGCCAACTCTTCACGCG 60.666 55.000 3.53 3.53 0.00 6.01
3887 4039 1.920574 CGATACAGCCAACTCTTCACG 59.079 52.381 0.00 0.00 0.00 4.35
3888 4040 1.661112 GCGATACAGCCAACTCTTCAC 59.339 52.381 0.00 0.00 0.00 3.18
3914 4066 6.639563 TGCTGCATATCTTAAGACTACAACA 58.360 36.000 7.48 3.34 0.00 3.33
3921 4073 5.505324 CCAAAGCTGCTGCATATCTTAAGAC 60.505 44.000 18.42 0.00 42.74 3.01
3940 4107 5.953183 TGACACTAATAGCATTTGCCAAAG 58.047 37.500 0.00 0.00 43.38 2.77
3993 4161 4.250116 TGCATACATGAAACAACCAACC 57.750 40.909 0.00 0.00 0.00 3.77
4010 4178 4.202182 GCATACTTCCACAAATCCATGCAT 60.202 41.667 0.00 0.00 37.92 3.96
4025 4193 6.089417 GCCAGTTACAAAATTGTGCATACTTC 59.911 38.462 8.99 0.14 42.31 3.01
4045 4213 3.827008 ATCATCACGATTACTGCCAGT 57.173 42.857 1.54 1.54 0.00 4.00
4077 4247 7.786178 TCTACACCACATGCTTACAAATATC 57.214 36.000 0.00 0.00 0.00 1.63
4078 4248 7.255242 GCATCTACACCACATGCTTACAAATAT 60.255 37.037 0.00 0.00 39.92 1.28
4178 4349 4.142708 CGTGCATACAATACACACAACCAT 60.143 41.667 0.00 0.00 33.89 3.55
4181 4352 4.637968 CTCGTGCATACAATACACACAAC 58.362 43.478 0.00 0.00 33.89 3.32
4184 4355 2.670905 TGCTCGTGCATACAATACACAC 59.329 45.455 8.30 0.00 45.31 3.82
4204 4380 9.865321 AAACAGGTAATTCATTCATTCAATCTG 57.135 29.630 0.00 0.00 0.00 2.90
4208 4384 9.190858 CGAAAAACAGGTAATTCATTCATTCAA 57.809 29.630 0.00 0.00 0.00 2.69
4209 4385 8.356657 ACGAAAAACAGGTAATTCATTCATTCA 58.643 29.630 0.00 0.00 0.00 2.57
4210 4386 8.742554 ACGAAAAACAGGTAATTCATTCATTC 57.257 30.769 0.00 0.00 0.00 2.67
4211 4387 9.840427 CTACGAAAAACAGGTAATTCATTCATT 57.160 29.630 0.00 0.00 0.00 2.57
4212 4388 9.226606 TCTACGAAAAACAGGTAATTCATTCAT 57.773 29.630 0.00 0.00 0.00 2.57
4213 4389 8.610248 TCTACGAAAAACAGGTAATTCATTCA 57.390 30.769 0.00 0.00 0.00 2.57
4242 4418 8.846943 TTCGACATATACCATGCATTATTTCT 57.153 30.769 0.00 0.00 0.00 2.52
4248 4424 5.122239 CCGATTTCGACATATACCATGCATT 59.878 40.000 0.00 0.00 43.02 3.56
4261 4437 1.089112 TCGTAGCTCCGATTTCGACA 58.911 50.000 0.00 0.00 43.02 4.35
4265 4441 1.140816 GGCATCGTAGCTCCGATTTC 58.859 55.000 11.92 6.79 44.72 2.17
4266 4442 0.249911 GGGCATCGTAGCTCCGATTT 60.250 55.000 11.92 0.00 44.72 2.17
4285 4461 0.716108 CTCTTAGTCAAGCGCAACGG 59.284 55.000 11.47 0.00 0.00 4.44
4304 4480 2.163010 CACATGAAGGTCCATGACAAGC 59.837 50.000 10.42 0.00 44.98 4.01
4309 4485 4.074259 CAAAGTCACATGAAGGTCCATGA 58.926 43.478 10.42 0.00 44.98 3.07
4351 4527 3.552384 AGACAACCGCCGACCCAA 61.552 61.111 0.00 0.00 0.00 4.12
4361 4538 1.278238 CGAATCTACCGCAGACAACC 58.722 55.000 0.00 0.00 35.62 3.77
4362 4539 1.135199 TCCGAATCTACCGCAGACAAC 60.135 52.381 0.00 0.00 35.62 3.32
4364 4541 0.738975 CTCCGAATCTACCGCAGACA 59.261 55.000 0.00 0.00 35.62 3.41
4366 4543 1.022735 GACTCCGAATCTACCGCAGA 58.977 55.000 0.00 0.00 37.79 4.26
4374 4551 1.561643 TGAGCAAGGACTCCGAATCT 58.438 50.000 0.00 0.00 35.72 2.40
4375 4552 2.208431 CATGAGCAAGGACTCCGAATC 58.792 52.381 0.00 0.00 35.72 2.52
4406 4583 0.935898 CTCGAGCAAGCATCATCACC 59.064 55.000 0.00 0.00 0.00 4.02
4451 4628 3.613265 CTCTCATCGAGGTGTCACG 57.387 57.895 0.00 0.00 36.06 4.35
4463 4640 2.048601 CATGGAGAAGAGGCCTCTCAT 58.951 52.381 35.18 28.10 42.34 2.90
4468 4645 2.441001 CAATACCATGGAGAAGAGGCCT 59.559 50.000 21.47 3.86 0.00 5.19
4469 4646 2.173569 ACAATACCATGGAGAAGAGGCC 59.826 50.000 21.47 0.00 0.00 5.19
4480 4657 5.625921 TGAATGACACACACAATACCATG 57.374 39.130 0.00 0.00 0.00 3.66
4481 4658 4.156556 GCTGAATGACACACACAATACCAT 59.843 41.667 0.00 0.00 0.00 3.55
4502 4695 1.598130 GAGACAGCCACAAACCGCT 60.598 57.895 0.00 0.00 35.10 5.52
4515 4708 2.589798 ACGAAAAACCGACAGAGACA 57.410 45.000 0.00 0.00 0.00 3.41
4556 4749 7.421530 TCTTTCTCGAAACAGATGTAAAAGG 57.578 36.000 0.00 0.00 0.00 3.11
4573 4766 5.159925 GGTACACTAGGTCGTTTCTTTCTC 58.840 45.833 0.00 0.00 0.00 2.87
4611 4804 2.354821 CGCAAATGAGGTTAGGTTAGGC 59.645 50.000 0.00 0.00 0.00 3.93
4617 4810 2.972625 TGACTCGCAAATGAGGTTAGG 58.027 47.619 0.00 0.00 40.39 2.69
4626 4819 3.875727 CTGGATCTGAATGACTCGCAAAT 59.124 43.478 0.00 0.00 0.00 2.32
4631 4824 3.790152 TGTCTGGATCTGAATGACTCG 57.210 47.619 0.00 0.00 0.00 4.18
4635 4828 5.488262 TGAACTTGTCTGGATCTGAATGA 57.512 39.130 0.00 0.00 0.00 2.57
4636 4829 5.471116 TGTTGAACTTGTCTGGATCTGAATG 59.529 40.000 0.00 0.00 0.00 2.67
4646 4839 1.872952 TCGCCATGTTGAACTTGTCTG 59.127 47.619 9.86 0.83 0.00 3.51
4674 4867 5.891551 ACCTTATCCCATTTACTCGCAAAAT 59.108 36.000 0.00 0.00 0.00 1.82
4685 4878 4.808042 AGCATGCTAACCTTATCCCATTT 58.192 39.130 21.21 0.00 0.00 2.32
4686 4879 4.459852 AGCATGCTAACCTTATCCCATT 57.540 40.909 21.21 0.00 0.00 3.16
4721 4914 2.653234 AGTGGAATGCATGGGAGATC 57.347 50.000 0.00 0.00 0.00 2.75
4725 4918 3.355378 CAGTTTAGTGGAATGCATGGGA 58.645 45.455 0.00 0.00 0.00 4.37
4727 4920 2.159198 GCCAGTTTAGTGGAATGCATGG 60.159 50.000 0.00 0.00 40.44 3.66
4732 4925 1.131126 CGCTGCCAGTTTAGTGGAATG 59.869 52.381 7.79 0.00 40.44 2.67
4744 4937 0.804364 TTAACTGAATGCGCTGCCAG 59.196 50.000 9.73 14.75 0.00 4.85
4752 4945 6.183359 CGTTGTATGCAAAGTTAACTGAATGC 60.183 38.462 23.88 23.88 36.22 3.56
4775 4969 5.457473 CGCTTAATTTTTGGTTTTCTGTCGT 59.543 36.000 0.00 0.00 0.00 4.34
4781 4975 6.838198 AACCTCGCTTAATTTTTGGTTTTC 57.162 33.333 0.00 0.00 33.16 2.29
4789 4983 6.092807 TGCAAAAACAAACCTCGCTTAATTTT 59.907 30.769 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.