Multiple sequence alignment - TraesCS6B01G408700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G408700 chr6B 100.000 2577 0 0 1 2577 682671002 682668426 0.000000e+00 4759.0
1 TraesCS6B01G408700 chr6B 90.764 1819 131 19 1 1813 682681823 682680036 0.000000e+00 2394.0
2 TraesCS6B01G408700 chr6B 92.879 1657 104 9 1 1649 682718121 682716471 0.000000e+00 2394.0
3 TraesCS6B01G408700 chr6D 93.425 1825 106 10 1 1814 450198330 450196509 0.000000e+00 2693.0
4 TraesCS6B01G408700 chr6D 91.378 1821 119 21 1 1814 450200908 450199119 0.000000e+00 2459.0
5 TraesCS6B01G408700 chr6D 88.816 152 13 3 1832 1981 450196054 450195905 1.570000e-42 183.0
6 TraesCS6B01G408700 chr6A 92.708 1824 111 10 1 1814 595672646 595670835 0.000000e+00 2612.0
7 TraesCS6B01G408700 chr6A 93.416 1610 96 7 1 1606 595693695 595692092 0.000000e+00 2377.0
8 TraesCS6B01G408700 chr6A 89.404 151 12 3 1832 1980 595670264 595670116 1.220000e-43 187.0
9 TraesCS6B01G408700 chr6A 85.030 167 24 1 1832 1998 595691425 595691260 4.410000e-38 169.0
10 TraesCS6B01G408700 chr6A 85.437 103 12 3 2018 2118 595670040 595669939 1.260000e-18 104.0
11 TraesCS6B01G408700 chr5D 84.564 149 11 6 40 186 254834376 254834238 1.240000e-28 137.0
12 TraesCS6B01G408700 chr5A 88.596 114 11 2 75 186 338234082 338233969 1.240000e-28 137.0
13 TraesCS6B01G408700 chr3A 83.660 153 17 4 36 186 121652230 121652376 1.240000e-28 137.0
14 TraesCS6B01G408700 chr7A 90.909 55 2 3 8 59 675486382 675486436 1.280000e-08 71.3
15 TraesCS6B01G408700 chr7D 96.875 32 1 0 20 51 622166410 622166379 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G408700 chr6B 682668426 682671002 2576 True 4759.000000 4759 100.000000 1 2577 1 chr6B.!!$R1 2576
1 TraesCS6B01G408700 chr6B 682680036 682681823 1787 True 2394.000000 2394 90.764000 1 1813 1 chr6B.!!$R2 1812
2 TraesCS6B01G408700 chr6B 682716471 682718121 1650 True 2394.000000 2394 92.879000 1 1649 1 chr6B.!!$R3 1648
3 TraesCS6B01G408700 chr6D 450195905 450200908 5003 True 1778.333333 2693 91.206333 1 1981 3 chr6D.!!$R1 1980
4 TraesCS6B01G408700 chr6A 595691260 595693695 2435 True 1273.000000 2377 89.223000 1 1998 2 chr6A.!!$R2 1997
5 TraesCS6B01G408700 chr6A 595669939 595672646 2707 True 967.666667 2612 89.183000 1 2118 3 chr6A.!!$R1 2117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 625 1.027357 ATTTCAGATGCATCGCCCAC 58.973 50.0 20.67 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 5648 0.040425 GCCGAATTCGCACAACAAGT 60.04 50.0 22.36 0.0 38.18 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 9.406828 CAAATCACTTCATGCATTAGAATATGG 57.593 33.333 11.55 0.00 0.00 2.74
124 125 2.967201 TGGGTGTAAGGTATATGTCGGG 59.033 50.000 0.00 0.00 0.00 5.14
192 195 4.929211 TGCACGGCAATTAGCTATATGTAG 59.071 41.667 0.00 0.00 44.79 2.74
225 229 7.215085 ACAAGTTAGAGACATCGGTTTTAGTT 58.785 34.615 0.00 0.00 0.00 2.24
314 320 4.401925 AGTCTTGTCTTCCTTTGGATTGG 58.598 43.478 0.00 0.00 0.00 3.16
317 323 3.874383 TGTCTTCCTTTGGATTGGACA 57.126 42.857 10.87 10.87 35.49 4.02
334 340 5.021033 TGGACAAAAACATGAAACTGCAT 57.979 34.783 0.00 0.00 0.00 3.96
618 625 1.027357 ATTTCAGATGCATCGCCCAC 58.973 50.000 20.67 0.00 0.00 4.61
643 650 9.046296 ACCAAGATAAAGATAATCATGAACGTC 57.954 33.333 0.00 0.00 0.00 4.34
658 665 1.220529 ACGTCGACACTGTTACGAGA 58.779 50.000 17.16 0.00 38.64 4.04
839 846 8.455598 TTTGCTTGTAAGTTAACAAAACAGAC 57.544 30.769 8.61 5.65 38.81 3.51
856 863 4.258543 ACAGACGAAGAGTGAAACCAAAA 58.741 39.130 0.00 0.00 37.80 2.44
1050 1057 2.543777 TGGATAGCTACGGGAATTGC 57.456 50.000 0.00 0.00 0.00 3.56
1120 1127 2.037641 CCGGGCTATCATTCAGATGACA 59.962 50.000 0.00 0.00 44.64 3.58
1135 1142 5.528690 TCAGATGACAAAGTCCAAAGAACAG 59.471 40.000 0.00 0.00 0.00 3.16
1151 1158 5.483685 AGAACAGTGGTGAGCTAACAATA 57.516 39.130 2.93 0.00 0.00 1.90
1152 1159 5.865085 AGAACAGTGGTGAGCTAACAATAA 58.135 37.500 2.93 0.00 0.00 1.40
1274 1281 4.159693 ACACTCAAGGCGTTGATGTATCTA 59.840 41.667 21.14 0.00 41.96 1.98
1321 1328 1.407618 GGGGCTGTTTTTGACGAGTTT 59.592 47.619 0.00 0.00 0.00 2.66
1323 1330 2.372350 GGCTGTTTTTGACGAGTTTCG 58.628 47.619 0.00 0.00 46.93 3.46
1390 1397 6.146760 AGGACATATAACAGGAGAAGATGGT 58.853 40.000 0.00 0.00 0.00 3.55
1426 1433 5.697826 GCTAATGGCTCAAATTCATCTAGC 58.302 41.667 0.00 0.00 38.06 3.42
1440 1447 5.363562 TCATCTAGCCATGATCAAGTTGT 57.636 39.130 0.00 0.00 0.00 3.32
1496 1503 6.992123 AGCGATCACATTCAGGAACAATTATA 59.008 34.615 0.00 0.00 0.00 0.98
1535 1542 4.393990 CCAACATAAGTAAGGTTCCGGTTC 59.606 45.833 0.00 0.00 0.00 3.62
1569 1576 5.893500 AGACTATCCAGATTCCGAGGATTA 58.106 41.667 7.85 0.00 42.03 1.75
1584 1591 4.932200 CGAGGATTATGATTAAGTGGAGGC 59.068 45.833 0.00 0.00 0.00 4.70
1596 1603 3.356529 AGTGGAGGCACCTTAAATCAG 57.643 47.619 1.84 0.00 39.86 2.90
1643 1687 4.649674 ACTCTCACTAGACTTTGTGGTGAA 59.350 41.667 0.00 0.00 36.65 3.18
1649 1693 6.998074 TCACTAGACTTTGTGGTGAATTGAAT 59.002 34.615 0.00 0.00 34.58 2.57
1679 1723 1.190178 AGGGTCGGGCCGGTTATATC 61.190 60.000 27.98 6.13 38.44 1.63
1684 1728 1.002502 GGGCCGGTTATATCAGGGC 60.003 63.158 15.38 15.38 44.53 5.19
1686 1730 1.375523 GCCGGTTATATCAGGGCCG 60.376 63.158 1.90 0.00 41.82 6.13
1691 4317 1.226746 GTTATATCAGGGCCGTGTGC 58.773 55.000 24.03 6.62 40.16 4.57
1709 4335 1.133199 TGCCAAACTCTGAAATGGGGT 60.133 47.619 5.51 0.00 33.45 4.95
1737 4363 8.907222 AATCAAAGTGCCATAATTTTCTTTGT 57.093 26.923 12.78 2.03 41.02 2.83
1827 4664 1.901538 CTCCGAGTGAGAACGACATG 58.098 55.000 0.00 0.00 44.42 3.21
1864 5114 1.449601 GATCGTGGTCGTGCCCAAT 60.450 57.895 0.00 0.00 35.92 3.16
1887 5137 1.068588 GAGTACATAGGTGATGCGGCA 59.931 52.381 4.58 4.58 39.39 5.69
1922 5172 1.337447 TGAGGTTTACTGTAGTGCGGC 60.337 52.381 0.00 0.00 0.00 6.53
1926 5176 1.725164 GTTTACTGTAGTGCGGCTCAC 59.275 52.381 0.00 0.00 45.98 3.51
1935 5185 2.697431 GTGCGGCTCACATTGTTTTA 57.303 45.000 2.10 0.00 44.98 1.52
2013 5301 7.993821 TTTTTGAAATAGCGACATTCAAACA 57.006 28.000 16.62 10.91 46.72 2.83
2016 5304 7.795431 TTGAAATAGCGACATTCAAACATTC 57.205 32.000 7.02 0.00 39.40 2.67
2029 5317 7.654520 ACATTCAAACATTCCTTTCTGAACATG 59.345 33.333 0.00 0.00 0.00 3.21
2038 5326 9.695526 CATTCCTTTCTGAACATGTATTGAAAA 57.304 29.630 15.79 7.10 0.00 2.29
2327 5617 2.814280 AACTACGTGAACTGGACAGG 57.186 50.000 0.00 0.00 0.00 4.00
2328 5618 1.991121 ACTACGTGAACTGGACAGGA 58.009 50.000 0.00 0.00 0.00 3.86
2329 5619 2.313317 ACTACGTGAACTGGACAGGAA 58.687 47.619 0.00 0.00 0.00 3.36
2330 5620 2.035576 ACTACGTGAACTGGACAGGAAC 59.964 50.000 0.00 0.00 0.00 3.62
2331 5621 0.106149 ACGTGAACTGGACAGGAACC 59.894 55.000 4.14 0.00 0.00 3.62
2332 5622 0.393077 CGTGAACTGGACAGGAACCT 59.607 55.000 4.14 0.00 0.00 3.50
2333 5623 1.202651 CGTGAACTGGACAGGAACCTT 60.203 52.381 4.14 0.00 0.00 3.50
2334 5624 2.495084 GTGAACTGGACAGGAACCTTC 58.505 52.381 4.14 0.00 0.00 3.46
2335 5625 2.104963 GTGAACTGGACAGGAACCTTCT 59.895 50.000 4.14 0.00 0.00 2.85
2336 5626 3.323979 GTGAACTGGACAGGAACCTTCTA 59.676 47.826 4.14 0.00 0.00 2.10
2337 5627 4.020128 GTGAACTGGACAGGAACCTTCTAT 60.020 45.833 4.14 0.00 0.00 1.98
2338 5628 5.187186 GTGAACTGGACAGGAACCTTCTATA 59.813 44.000 4.14 0.00 0.00 1.31
2339 5629 5.783360 TGAACTGGACAGGAACCTTCTATAA 59.217 40.000 4.14 0.00 0.00 0.98
2340 5630 5.941555 ACTGGACAGGAACCTTCTATAAG 57.058 43.478 4.14 0.00 0.00 1.73
2355 5645 8.451908 CCTTCTATAAGGTTCCTAAAACATGG 57.548 38.462 0.00 0.00 46.34 3.66
2356 5646 8.272173 CCTTCTATAAGGTTCCTAAAACATGGA 58.728 37.037 0.00 0.00 46.34 3.41
2357 5647 9.681062 CTTCTATAAGGTTCCTAAAACATGGAA 57.319 33.333 0.00 0.00 39.73 3.53
2369 5659 2.490328 ACATGGAAACTTGTTGTGCG 57.510 45.000 0.00 0.00 45.53 5.34
2370 5660 2.020720 ACATGGAAACTTGTTGTGCGA 58.979 42.857 0.00 0.00 45.53 5.10
2371 5661 2.425312 ACATGGAAACTTGTTGTGCGAA 59.575 40.909 0.00 0.00 45.53 4.70
2372 5662 3.068024 ACATGGAAACTTGTTGTGCGAAT 59.932 39.130 0.00 0.00 45.53 3.34
2373 5663 3.791973 TGGAAACTTGTTGTGCGAATT 57.208 38.095 0.00 0.00 0.00 2.17
2374 5664 3.701241 TGGAAACTTGTTGTGCGAATTC 58.299 40.909 0.00 0.00 0.00 2.17
2375 5665 2.719046 GGAAACTTGTTGTGCGAATTCG 59.281 45.455 23.34 23.34 43.27 3.34
2376 5666 2.399396 AACTTGTTGTGCGAATTCGG 57.601 45.000 27.78 11.80 40.23 4.30
2377 5667 0.040425 ACTTGTTGTGCGAATTCGGC 60.040 50.000 27.78 19.80 40.23 5.54
2378 5668 0.729140 CTTGTTGTGCGAATTCGGCC 60.729 55.000 27.78 13.57 40.23 6.13
2379 5669 2.202298 GTTGTGCGAATTCGGCCG 60.202 61.111 27.78 22.12 40.23 6.13
2380 5670 3.427425 TTGTGCGAATTCGGCCGG 61.427 61.111 27.83 10.00 40.23 6.13
2386 5676 3.595758 GAATTCGGCCGGCCCATG 61.596 66.667 39.24 25.64 0.00 3.66
2387 5677 4.122149 AATTCGGCCGGCCCATGA 62.122 61.111 39.24 27.60 0.00 3.07
2388 5678 3.653664 AATTCGGCCGGCCCATGAA 62.654 57.895 39.24 33.48 0.00 2.57
2389 5679 2.927201 AATTCGGCCGGCCCATGAAT 62.927 55.000 39.24 34.07 0.00 2.57
2390 5680 4.873810 TCGGCCGGCCCATGAATG 62.874 66.667 39.24 23.29 0.00 2.67
2392 5682 3.530260 GGCCGGCCCATGAATGTG 61.530 66.667 36.64 0.00 0.00 3.21
2393 5683 2.755469 GCCGGCCCATGAATGTGT 60.755 61.111 18.11 0.00 0.00 3.72
2394 5684 2.350458 GCCGGCCCATGAATGTGTT 61.350 57.895 18.11 0.00 0.00 3.32
2395 5685 1.512230 CCGGCCCATGAATGTGTTG 59.488 57.895 0.00 0.00 0.00 3.33
2396 5686 1.153784 CGGCCCATGAATGTGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
2397 5687 1.875420 CGGCCCATGAATGTGTTGCA 61.875 55.000 0.00 0.00 0.00 4.08
2398 5688 0.538118 GGCCCATGAATGTGTTGCAT 59.462 50.000 0.00 0.00 40.03 3.96
2399 5689 1.647346 GCCCATGAATGTGTTGCATG 58.353 50.000 0.00 0.00 37.96 4.06
2400 5690 1.205179 GCCCATGAATGTGTTGCATGA 59.795 47.619 0.00 0.00 41.35 3.07
2401 5691 2.737359 GCCCATGAATGTGTTGCATGAG 60.737 50.000 0.00 0.00 41.35 2.90
2402 5692 2.494471 CCCATGAATGTGTTGCATGAGT 59.506 45.455 0.00 0.00 41.35 3.41
2403 5693 3.507786 CCATGAATGTGTTGCATGAGTG 58.492 45.455 0.00 0.00 41.35 3.51
2404 5694 3.191791 CCATGAATGTGTTGCATGAGTGA 59.808 43.478 0.00 0.00 41.35 3.41
2405 5695 4.321378 CCATGAATGTGTTGCATGAGTGAA 60.321 41.667 0.00 0.00 41.35 3.18
2406 5696 4.915158 TGAATGTGTTGCATGAGTGAAA 57.085 36.364 0.00 0.00 37.96 2.69
2407 5697 5.456548 TGAATGTGTTGCATGAGTGAAAT 57.543 34.783 0.00 0.00 37.96 2.17
2408 5698 6.572167 TGAATGTGTTGCATGAGTGAAATA 57.428 33.333 0.00 0.00 37.96 1.40
2409 5699 6.979465 TGAATGTGTTGCATGAGTGAAATAA 58.021 32.000 0.00 0.00 37.96 1.40
2410 5700 6.862608 TGAATGTGTTGCATGAGTGAAATAAC 59.137 34.615 0.00 0.00 37.96 1.89
2411 5701 4.782156 TGTGTTGCATGAGTGAAATAACG 58.218 39.130 0.00 0.00 0.00 3.18
2412 5702 4.158384 GTGTTGCATGAGTGAAATAACGG 58.842 43.478 0.00 0.00 0.00 4.44
2413 5703 3.171277 GTTGCATGAGTGAAATAACGGC 58.829 45.455 0.00 0.00 0.00 5.68
2414 5704 2.431454 TGCATGAGTGAAATAACGGCA 58.569 42.857 0.00 0.00 0.00 5.69
2415 5705 2.816672 TGCATGAGTGAAATAACGGCAA 59.183 40.909 0.00 0.00 0.00 4.52
2416 5706 3.443329 TGCATGAGTGAAATAACGGCAAT 59.557 39.130 0.00 0.00 0.00 3.56
2417 5707 4.037690 GCATGAGTGAAATAACGGCAATC 58.962 43.478 0.00 0.00 0.00 2.67
2418 5708 4.201950 GCATGAGTGAAATAACGGCAATCT 60.202 41.667 0.00 0.00 0.00 2.40
2419 5709 4.944962 TGAGTGAAATAACGGCAATCTG 57.055 40.909 0.00 0.00 0.00 2.90
2420 5710 3.126858 TGAGTGAAATAACGGCAATCTGC 59.873 43.478 0.00 0.00 44.08 4.26
2432 5722 1.583404 GCAATCTGCCGCAAATAAACG 59.417 47.619 0.00 0.00 37.42 3.60
2433 5723 2.730715 GCAATCTGCCGCAAATAAACGA 60.731 45.455 0.00 0.00 37.42 3.85
2434 5724 3.694734 CAATCTGCCGCAAATAAACGAT 58.305 40.909 0.00 0.00 0.00 3.73
2435 5725 2.823196 TCTGCCGCAAATAAACGATG 57.177 45.000 0.00 0.00 0.00 3.84
2436 5726 2.351455 TCTGCCGCAAATAAACGATGA 58.649 42.857 0.00 0.00 0.00 2.92
2437 5727 2.744741 TCTGCCGCAAATAAACGATGAA 59.255 40.909 0.00 0.00 0.00 2.57
2438 5728 3.376859 TCTGCCGCAAATAAACGATGAAT 59.623 39.130 0.00 0.00 0.00 2.57
2439 5729 4.572795 TCTGCCGCAAATAAACGATGAATA 59.427 37.500 0.00 0.00 0.00 1.75
2440 5730 4.843147 TGCCGCAAATAAACGATGAATAG 58.157 39.130 0.00 0.00 0.00 1.73
2441 5731 4.219033 GCCGCAAATAAACGATGAATAGG 58.781 43.478 0.00 0.00 0.00 2.57
2442 5732 4.024387 GCCGCAAATAAACGATGAATAGGA 60.024 41.667 0.00 0.00 0.00 2.94
2443 5733 5.504994 GCCGCAAATAAACGATGAATAGGAA 60.505 40.000 0.00 0.00 0.00 3.36
2444 5734 6.668323 CCGCAAATAAACGATGAATAGGAAT 58.332 36.000 0.00 0.00 0.00 3.01
2445 5735 7.138736 CCGCAAATAAACGATGAATAGGAATT 58.861 34.615 0.00 0.00 0.00 2.17
2446 5736 7.113404 CCGCAAATAAACGATGAATAGGAATTG 59.887 37.037 0.00 0.00 0.00 2.32
2447 5737 7.855409 CGCAAATAAACGATGAATAGGAATTGA 59.145 33.333 0.00 0.00 0.00 2.57
2448 5738 8.958043 GCAAATAAACGATGAATAGGAATTGAC 58.042 33.333 0.00 0.00 0.00 3.18
2452 5742 5.679734 ACGATGAATAGGAATTGACATGC 57.320 39.130 0.00 0.00 0.00 4.06
2453 5743 4.212004 ACGATGAATAGGAATTGACATGCG 59.788 41.667 0.00 0.00 0.00 4.73
2454 5744 4.377738 CGATGAATAGGAATTGACATGCGG 60.378 45.833 0.00 0.00 0.00 5.69
2455 5745 4.149511 TGAATAGGAATTGACATGCGGA 57.850 40.909 0.00 0.00 0.00 5.54
2456 5746 4.522114 TGAATAGGAATTGACATGCGGAA 58.478 39.130 0.00 0.00 0.00 4.30
2457 5747 4.335315 TGAATAGGAATTGACATGCGGAAC 59.665 41.667 0.00 0.00 0.00 3.62
2458 5748 1.463674 AGGAATTGACATGCGGAACC 58.536 50.000 0.00 0.00 0.00 3.62
2459 5749 0.098728 GGAATTGACATGCGGAACCG 59.901 55.000 9.00 9.00 43.09 4.44
2469 5759 3.763319 CGGAACCGCGTAGACTTG 58.237 61.111 4.92 0.00 0.00 3.16
2470 5760 2.442188 CGGAACCGCGTAGACTTGC 61.442 63.158 4.92 0.00 0.00 4.01
2471 5761 2.098831 GGAACCGCGTAGACTTGCC 61.099 63.158 4.92 0.00 0.00 4.52
2472 5762 2.047560 AACCGCGTAGACTTGCCC 60.048 61.111 4.92 0.00 0.00 5.36
2473 5763 2.775032 GAACCGCGTAGACTTGCCCA 62.775 60.000 4.92 0.00 0.00 5.36
2474 5764 2.509336 CCGCGTAGACTTGCCCAG 60.509 66.667 4.92 0.00 0.00 4.45
2475 5765 2.509336 CGCGTAGACTTGCCCAGG 60.509 66.667 0.00 0.00 0.00 4.45
2476 5766 2.820037 GCGTAGACTTGCCCAGGC 60.820 66.667 0.38 0.38 42.35 4.85
2477 5767 2.509336 CGTAGACTTGCCCAGGCG 60.509 66.667 3.83 0.00 45.51 5.52
2478 5768 2.125106 GTAGACTTGCCCAGGCGG 60.125 66.667 3.83 2.09 45.51 6.13
2506 5796 2.768253 CTCTGTAGCATGTGGGTTGA 57.232 50.000 0.00 0.00 0.00 3.18
2507 5797 3.057969 CTCTGTAGCATGTGGGTTGAA 57.942 47.619 0.00 0.00 0.00 2.69
2508 5798 3.614092 CTCTGTAGCATGTGGGTTGAAT 58.386 45.455 0.00 0.00 0.00 2.57
2509 5799 4.012374 CTCTGTAGCATGTGGGTTGAATT 58.988 43.478 0.00 0.00 0.00 2.17
2510 5800 3.758023 TCTGTAGCATGTGGGTTGAATTG 59.242 43.478 0.00 0.00 0.00 2.32
2511 5801 3.758023 CTGTAGCATGTGGGTTGAATTGA 59.242 43.478 0.00 0.00 0.00 2.57
2512 5802 3.505680 TGTAGCATGTGGGTTGAATTGAC 59.494 43.478 0.00 0.00 0.00 3.18
2513 5803 2.596346 AGCATGTGGGTTGAATTGACA 58.404 42.857 0.00 0.00 0.00 3.58
2514 5804 3.167485 AGCATGTGGGTTGAATTGACAT 58.833 40.909 0.00 0.00 0.00 3.06
2515 5805 3.056393 AGCATGTGGGTTGAATTGACATG 60.056 43.478 0.00 0.00 44.40 3.21
2516 5806 3.255725 CATGTGGGTTGAATTGACATGC 58.744 45.455 0.00 0.00 37.99 4.06
2517 5807 1.617850 TGTGGGTTGAATTGACATGCC 59.382 47.619 0.00 0.00 0.00 4.40
2518 5808 1.066929 GTGGGTTGAATTGACATGCCC 60.067 52.381 0.00 0.00 36.55 5.36
2519 5809 1.265236 GGGTTGAATTGACATGCCCA 58.735 50.000 0.00 0.00 36.27 5.36
2520 5810 1.205417 GGGTTGAATTGACATGCCCAG 59.795 52.381 0.00 0.00 36.27 4.45
2521 5811 2.170166 GGTTGAATTGACATGCCCAGA 58.830 47.619 0.00 0.00 0.00 3.86
2522 5812 2.562298 GGTTGAATTGACATGCCCAGAA 59.438 45.455 0.00 0.00 0.00 3.02
2523 5813 3.006752 GGTTGAATTGACATGCCCAGAAA 59.993 43.478 0.00 0.00 0.00 2.52
2524 5814 4.322953 GGTTGAATTGACATGCCCAGAAAT 60.323 41.667 0.00 0.00 0.00 2.17
2525 5815 5.240121 GTTGAATTGACATGCCCAGAAATT 58.760 37.500 0.00 0.00 0.00 1.82
2526 5816 5.075858 TGAATTGACATGCCCAGAAATTC 57.924 39.130 0.00 1.14 35.55 2.17
2527 5817 4.527427 TGAATTGACATGCCCAGAAATTCA 59.473 37.500 8.87 8.87 40.08 2.57
2528 5818 4.730949 ATTGACATGCCCAGAAATTCAG 57.269 40.909 0.00 0.00 0.00 3.02
2529 5819 2.449464 TGACATGCCCAGAAATTCAGG 58.551 47.619 0.00 0.00 0.00 3.86
2530 5820 1.753073 GACATGCCCAGAAATTCAGGG 59.247 52.381 17.99 17.99 45.21 4.45
2533 5823 4.362479 CCCAGAAATTCAGGGCCC 57.638 61.111 16.46 16.46 36.36 5.80
2534 5824 1.381735 CCCAGAAATTCAGGGCCCC 60.382 63.158 21.43 0.00 36.36 5.80
2535 5825 1.699752 CCAGAAATTCAGGGCCCCT 59.300 57.895 21.43 0.00 0.00 4.79
2536 5826 0.926293 CCAGAAATTCAGGGCCCCTA 59.074 55.000 21.43 3.10 29.64 3.53
2537 5827 1.287739 CCAGAAATTCAGGGCCCCTAA 59.712 52.381 21.43 14.20 29.64 2.69
2538 5828 2.292192 CCAGAAATTCAGGGCCCCTAAA 60.292 50.000 21.43 11.21 29.64 1.85
2539 5829 3.440127 CAGAAATTCAGGGCCCCTAAAA 58.560 45.455 21.43 8.30 29.64 1.52
2540 5830 3.837731 CAGAAATTCAGGGCCCCTAAAAA 59.162 43.478 21.43 6.24 29.64 1.94
2541 5831 4.471025 CAGAAATTCAGGGCCCCTAAAAAT 59.529 41.667 21.43 8.53 29.64 1.82
2542 5832 5.045651 CAGAAATTCAGGGCCCCTAAAAATT 60.046 40.000 21.43 14.19 29.64 1.82
2543 5833 4.842531 AATTCAGGGCCCCTAAAAATTG 57.157 40.909 21.43 7.75 29.64 2.32
2544 5834 3.551635 TTCAGGGCCCCTAAAAATTGA 57.448 42.857 21.43 10.47 29.64 2.57
2545 5835 3.551635 TCAGGGCCCCTAAAAATTGAA 57.448 42.857 21.43 0.00 29.64 2.69
2546 5836 3.440127 TCAGGGCCCCTAAAAATTGAAG 58.560 45.455 21.43 0.00 29.64 3.02
2547 5837 2.501316 CAGGGCCCCTAAAAATTGAAGG 59.499 50.000 21.43 0.00 29.64 3.46
2548 5838 1.209504 GGGCCCCTAAAAATTGAAGGC 59.790 52.381 12.23 0.00 38.21 4.35
2549 5839 2.691409 GCCCCTAAAAATTGAAGGCC 57.309 50.000 0.00 0.00 32.68 5.19
2550 5840 2.187958 GCCCCTAAAAATTGAAGGCCT 58.812 47.619 0.00 0.00 32.68 5.19
2551 5841 2.168521 GCCCCTAAAAATTGAAGGCCTC 59.831 50.000 5.23 0.00 32.68 4.70
2552 5842 3.440127 CCCCTAAAAATTGAAGGCCTCA 58.560 45.455 5.23 2.73 0.00 3.86
2553 5843 4.033009 CCCCTAAAAATTGAAGGCCTCAT 58.967 43.478 5.23 0.00 32.78 2.90
2554 5844 4.141869 CCCCTAAAAATTGAAGGCCTCATG 60.142 45.833 5.23 0.00 32.78 3.07
2555 5845 4.436332 CCTAAAAATTGAAGGCCTCATGC 58.564 43.478 5.23 0.00 40.16 4.06
2570 5860 2.280119 TGCCATCGCATAGGTCGC 60.280 61.111 0.00 0.00 41.12 5.19
2571 5861 2.280119 GCCATCGCATAGGTCGCA 60.280 61.111 0.00 0.00 34.03 5.10
2572 5862 2.598632 GCCATCGCATAGGTCGCAC 61.599 63.158 0.00 0.00 34.03 5.34
2573 5863 2.302952 CCATCGCATAGGTCGCACG 61.303 63.158 0.00 0.00 0.00 5.34
2574 5864 2.658593 ATCGCATAGGTCGCACGC 60.659 61.111 0.00 0.00 0.00 5.34
2575 5865 4.865761 TCGCATAGGTCGCACGCC 62.866 66.667 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.617523 TTCTAATGCATGAAGTGATTTGATCTA 57.382 29.630 0.00 0.00 0.00 1.98
102 103 3.243975 CCCGACATATACCTTACACCCAC 60.244 52.174 0.00 0.00 0.00 4.61
124 125 6.097356 TCTAGTGATTCAACACCAATCGTAC 58.903 40.000 0.00 0.00 41.12 3.67
192 195 7.279758 ACCGATGTCTCTAACTTGTACTACTAC 59.720 40.741 0.00 0.00 0.00 2.73
586 593 6.623486 TGCATCTGAAATGAATTAACAGGTG 58.377 36.000 14.00 14.00 37.90 4.00
618 625 8.217115 CGACGTTCATGATTATCTTTATCTTGG 58.783 37.037 0.00 0.00 31.58 3.61
643 650 4.765281 TTGTTTTCTCGTAACAGTGTCG 57.235 40.909 0.00 0.00 36.89 4.35
658 665 3.184986 GCAGATGCGCAGAAATTTGTTTT 59.815 39.130 18.32 0.00 0.00 2.43
818 825 8.385111 TCTTCGTCTGTTTTGTTAACTTACAAG 58.615 33.333 7.22 0.06 39.06 3.16
856 863 9.884465 TTTCGTTTTGTTGTTCAATTCAATTTT 57.116 22.222 0.00 0.00 35.84 1.82
991 998 1.988293 TCCCTTTCCATGCGTTTTCA 58.012 45.000 0.00 0.00 0.00 2.69
1050 1057 2.348666 CACGGATTTAGAACTTGAGGCG 59.651 50.000 0.00 0.00 0.00 5.52
1120 1127 3.947834 CTCACCACTGTTCTTTGGACTTT 59.052 43.478 0.00 0.00 36.28 2.66
1274 1281 0.607489 AAGGCTCTTCGCATTGCTGT 60.607 50.000 7.12 0.00 41.74 4.40
1321 1328 3.112263 AGAAGGACCATTGGAATACCGA 58.888 45.455 10.37 0.00 39.42 4.69
1323 1330 5.130477 TCACTAGAAGGACCATTGGAATACC 59.870 44.000 10.37 7.21 0.00 2.73
1440 1447 6.016024 AGCTCTTGAATTGTATGTTTGAGCAA 60.016 34.615 12.56 0.00 44.49 3.91
1496 1503 2.104111 TGTTGGAGACTTGGTCGTGATT 59.896 45.455 0.00 0.00 37.67 2.57
1535 1542 2.366916 CTGGATAGTCTACAAGGCCCTG 59.633 54.545 0.00 0.00 0.00 4.45
1569 1576 5.450818 TTAAGGTGCCTCCACTTAATCAT 57.549 39.130 0.00 0.00 41.75 2.45
1636 1680 9.950680 CCTACATGTTAATATTCAATTCACCAC 57.049 33.333 2.30 0.00 0.00 4.16
1643 1687 6.940298 CCCGACCCTACATGTTAATATTCAAT 59.060 38.462 2.30 0.00 0.00 2.57
1649 1693 2.369532 GGCCCGACCCTACATGTTAATA 59.630 50.000 2.30 0.00 0.00 0.98
1684 1728 1.021202 TTTCAGAGTTTGGCACACGG 58.979 50.000 0.00 0.00 39.29 4.94
1686 1730 2.288395 CCCATTTCAGAGTTTGGCACAC 60.288 50.000 0.00 0.00 39.29 3.82
1691 4317 3.160679 AGACCCCATTTCAGAGTTTGG 57.839 47.619 0.00 0.00 0.00 3.28
1864 5114 1.686587 CGCATCACCTATGTACTCCCA 59.313 52.381 0.00 0.00 37.93 4.37
1877 5127 3.081133 CTACGTGTGCCGCATCAC 58.919 61.111 0.00 13.09 41.42 3.06
1878 5128 2.813474 GCTACGTGTGCCGCATCA 60.813 61.111 0.00 0.00 41.42 3.07
1880 5130 3.925362 TTCGCTACGTGTGCCGCAT 62.925 57.895 0.00 0.00 41.42 4.73
1887 5137 0.458543 CCTCATGCTTCGCTACGTGT 60.459 55.000 0.00 0.00 0.00 4.49
1891 5141 3.307242 CAGTAAACCTCATGCTTCGCTAC 59.693 47.826 0.00 0.00 0.00 3.58
1922 5172 8.920665 TGTTCACTGTTTTTAAAACAATGTGAG 58.079 29.630 27.90 17.95 36.97 3.51
1998 5274 5.705441 AGAAAGGAATGTTTGAATGTCGCTA 59.295 36.000 0.00 0.00 0.00 4.26
2000 5276 4.618489 CAGAAAGGAATGTTTGAATGTCGC 59.382 41.667 0.00 0.00 0.00 5.19
2004 5280 7.654520 ACATGTTCAGAAAGGAATGTTTGAATG 59.345 33.333 0.00 0.00 0.00 2.67
2005 5281 7.729116 ACATGTTCAGAAAGGAATGTTTGAAT 58.271 30.769 0.00 0.00 0.00 2.57
2009 5297 8.859090 TCAATACATGTTCAGAAAGGAATGTTT 58.141 29.630 2.30 0.00 0.00 2.83
2012 5300 9.695526 TTTTCAATACATGTTCAGAAAGGAATG 57.304 29.630 2.30 0.00 0.00 2.67
2305 5595 3.875134 CCTGTCCAGTTCACGTAGTTTTT 59.125 43.478 0.00 0.00 41.61 1.94
2306 5596 3.133362 TCCTGTCCAGTTCACGTAGTTTT 59.867 43.478 0.00 0.00 41.61 2.43
2307 5597 2.696707 TCCTGTCCAGTTCACGTAGTTT 59.303 45.455 0.00 0.00 41.61 2.66
2308 5598 2.313317 TCCTGTCCAGTTCACGTAGTT 58.687 47.619 0.00 0.00 41.61 2.24
2310 5600 2.609737 GGTTCCTGTCCAGTTCACGTAG 60.610 54.545 0.00 0.00 0.00 3.51
2311 5601 1.342174 GGTTCCTGTCCAGTTCACGTA 59.658 52.381 0.00 0.00 0.00 3.57
2312 5602 0.106149 GGTTCCTGTCCAGTTCACGT 59.894 55.000 0.00 0.00 0.00 4.49
2313 5603 0.393077 AGGTTCCTGTCCAGTTCACG 59.607 55.000 0.00 0.00 0.00 4.35
2314 5604 2.104963 AGAAGGTTCCTGTCCAGTTCAC 59.895 50.000 0.00 0.00 0.00 3.18
2315 5605 2.408565 AGAAGGTTCCTGTCCAGTTCA 58.591 47.619 0.00 0.00 0.00 3.18
2316 5606 4.828072 ATAGAAGGTTCCTGTCCAGTTC 57.172 45.455 0.00 0.00 0.00 3.01
2317 5607 5.189934 CCTTATAGAAGGTTCCTGTCCAGTT 59.810 44.000 8.05 0.00 46.46 3.16
2318 5608 4.717280 CCTTATAGAAGGTTCCTGTCCAGT 59.283 45.833 8.05 0.00 46.46 4.00
2319 5609 5.283457 CCTTATAGAAGGTTCCTGTCCAG 57.717 47.826 8.05 0.00 46.46 3.86
2331 5621 9.681062 TTCCATGTTTTAGGAACCTTATAGAAG 57.319 33.333 0.00 0.00 38.91 2.85
2333 5623 9.457436 GTTTCCATGTTTTAGGAACCTTATAGA 57.543 33.333 0.00 0.00 43.23 1.98
2334 5624 9.462606 AGTTTCCATGTTTTAGGAACCTTATAG 57.537 33.333 0.00 0.00 43.23 1.31
2335 5625 9.816787 AAGTTTCCATGTTTTAGGAACCTTATA 57.183 29.630 2.70 0.00 42.54 0.98
2336 5626 8.585018 CAAGTTTCCATGTTTTAGGAACCTTAT 58.415 33.333 4.10 0.00 42.49 1.73
2337 5627 7.562088 ACAAGTTTCCATGTTTTAGGAACCTTA 59.438 33.333 4.10 0.00 42.49 2.69
2338 5628 6.382859 ACAAGTTTCCATGTTTTAGGAACCTT 59.617 34.615 0.00 0.00 44.37 3.50
2339 5629 5.897250 ACAAGTTTCCATGTTTTAGGAACCT 59.103 36.000 0.00 0.00 43.23 3.50
2340 5630 6.156748 ACAAGTTTCCATGTTTTAGGAACC 57.843 37.500 0.00 0.00 43.23 3.62
2341 5631 7.010091 CACAACAAGTTTCCATGTTTTAGGAAC 59.990 37.037 0.00 0.00 43.23 3.62
2342 5632 7.038659 CACAACAAGTTTCCATGTTTTAGGAA 58.961 34.615 0.00 0.00 41.92 3.36
2343 5633 6.568869 CACAACAAGTTTCCATGTTTTAGGA 58.431 36.000 0.00 0.00 37.66 2.94
2344 5634 5.234116 GCACAACAAGTTTCCATGTTTTAGG 59.766 40.000 0.00 0.00 37.66 2.69
2345 5635 5.051774 CGCACAACAAGTTTCCATGTTTTAG 60.052 40.000 0.00 0.00 37.66 1.85
2346 5636 4.800993 CGCACAACAAGTTTCCATGTTTTA 59.199 37.500 0.00 0.00 37.66 1.52
2347 5637 3.616379 CGCACAACAAGTTTCCATGTTTT 59.384 39.130 0.00 0.00 37.66 2.43
2348 5638 3.119316 TCGCACAACAAGTTTCCATGTTT 60.119 39.130 0.00 0.00 37.66 2.83
2349 5639 2.425312 TCGCACAACAAGTTTCCATGTT 59.575 40.909 0.00 0.00 40.24 2.71
2350 5640 2.020720 TCGCACAACAAGTTTCCATGT 58.979 42.857 0.00 0.00 0.00 3.21
2351 5641 2.772568 TCGCACAACAAGTTTCCATG 57.227 45.000 0.00 0.00 0.00 3.66
2352 5642 4.298332 GAATTCGCACAACAAGTTTCCAT 58.702 39.130 0.00 0.00 0.00 3.41
2353 5643 3.701241 GAATTCGCACAACAAGTTTCCA 58.299 40.909 0.00 0.00 0.00 3.53
2354 5644 2.719046 CGAATTCGCACAACAAGTTTCC 59.281 45.455 15.93 0.00 0.00 3.13
2355 5645 2.719046 CCGAATTCGCACAACAAGTTTC 59.281 45.455 22.36 0.00 38.18 2.78
2356 5646 2.726633 CCGAATTCGCACAACAAGTTT 58.273 42.857 22.36 0.00 38.18 2.66
2357 5647 1.599419 GCCGAATTCGCACAACAAGTT 60.599 47.619 22.36 0.00 38.18 2.66
2358 5648 0.040425 GCCGAATTCGCACAACAAGT 60.040 50.000 22.36 0.00 38.18 3.16
2359 5649 0.729140 GGCCGAATTCGCACAACAAG 60.729 55.000 22.36 7.19 38.18 3.16
2360 5650 1.284408 GGCCGAATTCGCACAACAA 59.716 52.632 22.36 0.00 38.18 2.83
2361 5651 2.950673 GGCCGAATTCGCACAACA 59.049 55.556 22.36 0.00 38.18 3.33
2362 5652 2.202298 CGGCCGAATTCGCACAAC 60.202 61.111 24.07 8.19 38.18 3.32
2363 5653 3.427425 CCGGCCGAATTCGCACAA 61.427 61.111 30.73 0.00 38.18 3.33
2369 5659 3.595758 CATGGGCCGGCCGAATTC 61.596 66.667 38.22 24.60 36.85 2.17
2370 5660 2.927201 ATTCATGGGCCGGCCGAATT 62.927 55.000 38.22 19.16 36.85 2.17
2371 5661 3.435525 ATTCATGGGCCGGCCGAAT 62.436 57.895 38.22 33.68 36.85 3.34
2372 5662 4.122149 ATTCATGGGCCGGCCGAA 62.122 61.111 38.22 33.08 36.85 4.30
2373 5663 4.873810 CATTCATGGGCCGGCCGA 62.874 66.667 38.22 35.96 36.85 5.54
2375 5665 3.530260 CACATTCATGGGCCGGCC 61.530 66.667 38.57 38.57 0.00 6.13
2376 5666 2.350458 AACACATTCATGGGCCGGC 61.350 57.895 21.18 21.18 33.50 6.13
2377 5667 1.512230 CAACACATTCATGGGCCGG 59.488 57.895 0.00 0.00 33.50 6.13
2378 5668 1.153784 GCAACACATTCATGGGCCG 60.154 57.895 0.00 0.00 33.50 6.13
2379 5669 0.538118 ATGCAACACATTCATGGGCC 59.462 50.000 0.00 0.00 34.40 5.80
2380 5670 1.205179 TCATGCAACACATTCATGGGC 59.795 47.619 0.00 0.00 36.64 5.36
2381 5671 2.494471 ACTCATGCAACACATTCATGGG 59.506 45.455 0.00 0.00 42.70 4.00
2382 5672 3.191791 TCACTCATGCAACACATTCATGG 59.808 43.478 0.00 0.00 36.64 3.66
2383 5673 4.428615 TCACTCATGCAACACATTCATG 57.571 40.909 0.00 0.00 36.64 3.07
2384 5674 5.456548 TTTCACTCATGCAACACATTCAT 57.543 34.783 0.00 0.00 36.64 2.57
2385 5675 4.915158 TTTCACTCATGCAACACATTCA 57.085 36.364 0.00 0.00 36.64 2.57
2386 5676 6.032775 CGTTATTTCACTCATGCAACACATTC 59.967 38.462 0.00 0.00 36.64 2.67
2387 5677 5.858049 CGTTATTTCACTCATGCAACACATT 59.142 36.000 0.00 0.00 36.64 2.71
2388 5678 5.393124 CGTTATTTCACTCATGCAACACAT 58.607 37.500 0.00 0.00 40.66 3.21
2389 5679 4.320129 CCGTTATTTCACTCATGCAACACA 60.320 41.667 0.00 0.00 0.00 3.72
2390 5680 4.158384 CCGTTATTTCACTCATGCAACAC 58.842 43.478 0.00 0.00 0.00 3.32
2391 5681 3.365868 GCCGTTATTTCACTCATGCAACA 60.366 43.478 0.00 0.00 0.00 3.33
2392 5682 3.171277 GCCGTTATTTCACTCATGCAAC 58.829 45.455 0.00 0.00 0.00 4.17
2393 5683 2.816672 TGCCGTTATTTCACTCATGCAA 59.183 40.909 0.00 0.00 0.00 4.08
2394 5684 2.431454 TGCCGTTATTTCACTCATGCA 58.569 42.857 0.00 0.00 0.00 3.96
2395 5685 3.485947 TTGCCGTTATTTCACTCATGC 57.514 42.857 0.00 0.00 0.00 4.06
2396 5686 5.268544 CAGATTGCCGTTATTTCACTCATG 58.731 41.667 0.00 0.00 0.00 3.07
2397 5687 4.201950 GCAGATTGCCGTTATTTCACTCAT 60.202 41.667 0.00 0.00 37.42 2.90
2398 5688 3.126858 GCAGATTGCCGTTATTTCACTCA 59.873 43.478 0.00 0.00 37.42 3.41
2399 5689 3.685058 GCAGATTGCCGTTATTTCACTC 58.315 45.455 0.00 0.00 37.42 3.51
2400 5690 3.764885 GCAGATTGCCGTTATTTCACT 57.235 42.857 0.00 0.00 37.42 3.41
2412 5702 1.583404 CGTTTATTTGCGGCAGATTGC 59.417 47.619 11.49 2.20 44.08 3.56
2413 5703 3.129852 TCGTTTATTTGCGGCAGATTG 57.870 42.857 11.49 0.71 0.00 2.67
2414 5704 3.376859 TCATCGTTTATTTGCGGCAGATT 59.623 39.130 11.49 0.00 0.00 2.40
2415 5705 2.942376 TCATCGTTTATTTGCGGCAGAT 59.058 40.909 11.01 11.01 0.00 2.90
2416 5706 2.351455 TCATCGTTTATTTGCGGCAGA 58.649 42.857 1.67 0.00 0.00 4.26
2417 5707 2.823196 TCATCGTTTATTTGCGGCAG 57.177 45.000 1.67 0.00 0.00 4.85
2418 5708 3.773860 ATTCATCGTTTATTTGCGGCA 57.226 38.095 0.00 0.00 0.00 5.69
2419 5709 4.024387 TCCTATTCATCGTTTATTTGCGGC 60.024 41.667 0.00 0.00 0.00 6.53
2420 5710 5.666969 TCCTATTCATCGTTTATTTGCGG 57.333 39.130 0.00 0.00 0.00 5.69
2421 5711 7.855409 TCAATTCCTATTCATCGTTTATTTGCG 59.145 33.333 0.00 0.00 0.00 4.85
2422 5712 8.958043 GTCAATTCCTATTCATCGTTTATTTGC 58.042 33.333 0.00 0.00 0.00 3.68
2426 5716 8.292448 GCATGTCAATTCCTATTCATCGTTTAT 58.708 33.333 0.00 0.00 0.00 1.40
2427 5717 7.518211 CGCATGTCAATTCCTATTCATCGTTTA 60.518 37.037 0.00 0.00 0.00 2.01
2428 5718 6.498304 GCATGTCAATTCCTATTCATCGTTT 58.502 36.000 0.00 0.00 0.00 3.60
2429 5719 5.277490 CGCATGTCAATTCCTATTCATCGTT 60.277 40.000 0.00 0.00 0.00 3.85
2430 5720 4.212004 CGCATGTCAATTCCTATTCATCGT 59.788 41.667 0.00 0.00 0.00 3.73
2431 5721 4.377738 CCGCATGTCAATTCCTATTCATCG 60.378 45.833 0.00 0.00 0.00 3.84
2432 5722 4.756642 TCCGCATGTCAATTCCTATTCATC 59.243 41.667 0.00 0.00 0.00 2.92
2433 5723 4.717877 TCCGCATGTCAATTCCTATTCAT 58.282 39.130 0.00 0.00 0.00 2.57
2434 5724 4.149511 TCCGCATGTCAATTCCTATTCA 57.850 40.909 0.00 0.00 0.00 2.57
2435 5725 4.261197 GGTTCCGCATGTCAATTCCTATTC 60.261 45.833 0.00 0.00 0.00 1.75
2436 5726 3.632145 GGTTCCGCATGTCAATTCCTATT 59.368 43.478 0.00 0.00 0.00 1.73
2437 5727 3.214328 GGTTCCGCATGTCAATTCCTAT 58.786 45.455 0.00 0.00 0.00 2.57
2438 5728 2.639065 GGTTCCGCATGTCAATTCCTA 58.361 47.619 0.00 0.00 0.00 2.94
2439 5729 1.463674 GGTTCCGCATGTCAATTCCT 58.536 50.000 0.00 0.00 0.00 3.36
2440 5730 0.098728 CGGTTCCGCATGTCAATTCC 59.901 55.000 0.00 0.00 0.00 3.01
2441 5731 3.604130 CGGTTCCGCATGTCAATTC 57.396 52.632 0.00 0.00 0.00 2.17
2452 5742 2.442188 GCAAGTCTACGCGGTTCCG 61.442 63.158 12.47 6.90 0.00 4.30
2453 5743 2.098831 GGCAAGTCTACGCGGTTCC 61.099 63.158 12.47 0.00 0.00 3.62
2454 5744 2.098831 GGGCAAGTCTACGCGGTTC 61.099 63.158 12.47 0.00 0.00 3.62
2455 5745 2.047560 GGGCAAGTCTACGCGGTT 60.048 61.111 12.47 0.00 0.00 4.44
2456 5746 3.296709 CTGGGCAAGTCTACGCGGT 62.297 63.158 12.47 0.00 0.00 5.68
2457 5747 2.509336 CTGGGCAAGTCTACGCGG 60.509 66.667 12.47 0.00 0.00 6.46
2458 5748 2.509336 CCTGGGCAAGTCTACGCG 60.509 66.667 3.53 3.53 0.00 6.01
2459 5749 2.820037 GCCTGGGCAAGTCTACGC 60.820 66.667 6.75 0.00 41.49 4.42
2460 5750 2.509336 CGCCTGGGCAAGTCTACG 60.509 66.667 12.34 0.00 42.06 3.51
2461 5751 2.125106 CCGCCTGGGCAAGTCTAC 60.125 66.667 12.34 0.00 42.06 2.59
2487 5777 2.768253 TCAACCCACATGCTACAGAG 57.232 50.000 0.00 0.00 0.00 3.35
2488 5778 3.719268 ATTCAACCCACATGCTACAGA 57.281 42.857 0.00 0.00 0.00 3.41
2489 5779 3.758023 TCAATTCAACCCACATGCTACAG 59.242 43.478 0.00 0.00 0.00 2.74
2490 5780 3.505680 GTCAATTCAACCCACATGCTACA 59.494 43.478 0.00 0.00 0.00 2.74
2491 5781 3.505680 TGTCAATTCAACCCACATGCTAC 59.494 43.478 0.00 0.00 0.00 3.58
2492 5782 3.760738 TGTCAATTCAACCCACATGCTA 58.239 40.909 0.00 0.00 0.00 3.49
2493 5783 2.596346 TGTCAATTCAACCCACATGCT 58.404 42.857 0.00 0.00 0.00 3.79
2494 5784 3.255725 CATGTCAATTCAACCCACATGC 58.744 45.455 0.00 0.00 38.33 4.06
2495 5785 3.255725 GCATGTCAATTCAACCCACATG 58.744 45.455 6.07 6.07 44.77 3.21
2496 5786 2.234414 GGCATGTCAATTCAACCCACAT 59.766 45.455 0.00 0.00 0.00 3.21
2497 5787 1.617850 GGCATGTCAATTCAACCCACA 59.382 47.619 0.00 0.00 0.00 4.17
2498 5788 1.066929 GGGCATGTCAATTCAACCCAC 60.067 52.381 0.00 0.00 37.57 4.61
2499 5789 1.265236 GGGCATGTCAATTCAACCCA 58.735 50.000 0.00 0.00 37.57 4.51
2500 5790 1.205417 CTGGGCATGTCAATTCAACCC 59.795 52.381 0.00 0.00 37.90 4.11
2501 5791 2.170166 TCTGGGCATGTCAATTCAACC 58.830 47.619 0.00 0.00 0.00 3.77
2502 5792 3.940209 TTCTGGGCATGTCAATTCAAC 57.060 42.857 0.00 0.00 0.00 3.18
2503 5793 5.011840 TGAATTTCTGGGCATGTCAATTCAA 59.988 36.000 16.72 5.50 37.57 2.69
2504 5794 4.527427 TGAATTTCTGGGCATGTCAATTCA 59.473 37.500 15.63 15.63 37.97 2.57
2505 5795 5.075858 TGAATTTCTGGGCATGTCAATTC 57.924 39.130 11.81 11.81 33.22 2.17
2506 5796 4.081309 CCTGAATTTCTGGGCATGTCAATT 60.081 41.667 13.12 0.00 32.51 2.32
2507 5797 3.449737 CCTGAATTTCTGGGCATGTCAAT 59.550 43.478 13.12 0.00 32.51 2.57
2508 5798 2.827322 CCTGAATTTCTGGGCATGTCAA 59.173 45.455 13.12 0.00 32.51 3.18
2509 5799 2.449464 CCTGAATTTCTGGGCATGTCA 58.551 47.619 13.12 0.00 32.51 3.58
2510 5800 1.753073 CCCTGAATTTCTGGGCATGTC 59.247 52.381 23.63 0.00 46.48 3.06
2511 5801 1.856629 CCCTGAATTTCTGGGCATGT 58.143 50.000 23.63 0.00 46.48 3.21
2517 5807 0.926293 TAGGGGCCCTGAATTTCTGG 59.074 55.000 35.70 13.81 34.61 3.86
2518 5808 2.826674 TTAGGGGCCCTGAATTTCTG 57.173 50.000 35.70 0.00 34.61 3.02
2519 5809 3.845109 TTTTAGGGGCCCTGAATTTCT 57.155 42.857 35.70 10.97 34.61 2.52
2520 5810 5.045942 TCAATTTTTAGGGGCCCTGAATTTC 60.046 40.000 35.70 2.05 34.61 2.17
2521 5811 4.849235 TCAATTTTTAGGGGCCCTGAATTT 59.151 37.500 35.70 23.87 34.61 1.82
2522 5812 4.434195 TCAATTTTTAGGGGCCCTGAATT 58.566 39.130 35.70 29.28 34.61 2.17
2523 5813 4.073425 TCAATTTTTAGGGGCCCTGAAT 57.927 40.909 35.70 25.86 34.61 2.57
2524 5814 3.551635 TCAATTTTTAGGGGCCCTGAA 57.448 42.857 35.70 30.12 34.61 3.02
2525 5815 3.440127 CTTCAATTTTTAGGGGCCCTGA 58.560 45.455 35.70 25.67 34.61 3.86
2526 5816 2.501316 CCTTCAATTTTTAGGGGCCCTG 59.499 50.000 35.70 17.42 34.61 4.45
2527 5817 2.832838 CCTTCAATTTTTAGGGGCCCT 58.167 47.619 31.38 31.38 37.71 5.19
2528 5818 1.209504 GCCTTCAATTTTTAGGGGCCC 59.790 52.381 17.12 17.12 32.86 5.80
2529 5819 2.691409 GCCTTCAATTTTTAGGGGCC 57.309 50.000 0.00 0.00 32.86 5.80
2530 5820 2.168521 GAGGCCTTCAATTTTTAGGGGC 59.831 50.000 6.77 0.00 39.27 5.80
2531 5821 3.440127 TGAGGCCTTCAATTTTTAGGGG 58.560 45.455 6.77 0.00 31.34 4.79
2532 5822 4.681512 GCATGAGGCCTTCAATTTTTAGGG 60.682 45.833 6.77 0.00 39.77 3.53
2533 5823 4.436332 GCATGAGGCCTTCAATTTTTAGG 58.564 43.478 6.77 0.00 39.77 2.69
2554 5844 2.280119 TGCGACCTATGCGATGGC 60.280 61.111 0.00 0.00 40.52 4.40
2555 5845 2.302952 CGTGCGACCTATGCGATGG 61.303 63.158 0.00 0.00 34.24 3.51
2556 5846 2.932083 GCGTGCGACCTATGCGATG 61.932 63.158 0.00 0.00 34.24 3.84
2557 5847 2.658593 GCGTGCGACCTATGCGAT 60.659 61.111 0.00 0.00 34.24 4.58
2558 5848 4.865761 GGCGTGCGACCTATGCGA 62.866 66.667 0.00 0.00 34.24 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.